17-17931620-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17931620
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17931620
    reference: chr 17
allele count: 7
allele frequency: 5.771482281549396e-5
allele num: 121286
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463861
  ensembl transcript: ENST00000585101
  gene symbol: ATPAF2
  hgvsc: ENST00000585101.1:c.178+309G>A
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000417190
  ensembl transcript: ENST00000474627
  gene symbol: ATPAF2
  hgvsc: ENST00000474627.3:c.250G>A
  hgvsp: ENSP00000417190.2:p.Glu84Lys
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000462899
  ensembl transcript: ENST00000584205
  gene symbol: ATPAF2
  hgvsc: ENST00000584205.1:c.178+309G>A
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000497871
  gene symbol: ATPAF2
  hgvsc: ENST00000497871.1:n.438G>A
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000577586
  gene symbol: ATPAF2
  hgvsc: ENST00000577586.1:n.401G>A
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000397198
  ensembl transcript: ENST00000444058
  gene symbol: ATPAF2
  hgvsc: ENST00000444058.1:c.250G>A
  hgvsp: ENSP00000397198.1:p.Glu84Lys
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463920
  ensembl transcript: ENST00000462733
  gene symbol: ATPAF2
  hgvsc: ENST00000462733.1:c.178+309G>A
  variant of: http://identifiers.org/hgnc/18802
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12696
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28496
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2303
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8974
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37444
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7454
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 560
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Glu84Lys
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

17-17931621-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17931621
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17931621
    reference: chr 17
allele count: 3
allele frequency: 2.473777953690877e-5
allele num: 121272
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000417190
  ensembl transcript: ENST00000474627
  gene symbol: ATPAF2
  hgvsc: ENST00000474627.3:c.249C>T
  hgvsp: ENST00000474627.3:c.249C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000462899
  ensembl transcript: ENST00000584205
  gene symbol: ATPAF2
  hgvsc: ENST00000584205.1:c.178+308C>T
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463920
  ensembl transcript: ENST00000462733
  gene symbol: ATPAF2
  hgvsc: ENST00000462733.1:c.178+308C>T
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000397198
  ensembl transcript: ENST00000444058
  gene symbol: ATPAF2
  hgvsc: ENST00000444058.1:c.249C>T
  hgvsp: ENST00000444058.1:c.249C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000577586
  gene symbol: ATPAF2
  hgvsc: ENST00000577586.1:n.400C>T
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000497871
  gene symbol: ATPAF2
  hgvsc: ENST00000497871.1:n.437C>T
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463861
  ensembl transcript: ENST00000585101
  gene symbol: ATPAF2
  hgvsc: ENST00000585101.1:c.178+308C>T
  variant of: http://identifiers.org/hgnc/18802
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2297
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28500
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12692
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8973
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7453
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8012
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 738
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1446
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ser83Ser
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: MQ

17-17931624-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17931624
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17931624
    reference: chr 17
allele count: 1
allele frequency: 8.246334504312833e-6
allele num: 121266
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463861
  ensembl transcript: ENST00000585101
  gene symbol: ATPAF2
  hgvsc: ENST00000585101.1:c.178+305C>T
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463920
  ensembl transcript: ENST00000462733
  gene symbol: ATPAF2
  hgvsc: ENST00000462733.1:c.178+305C>T
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000462899
  ensembl transcript: ENST00000584205
  gene symbol: ATPAF2
  hgvsc: ENST00000584205.1:c.178+305C>T
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000397198
  ensembl transcript: ENST00000444058
  gene symbol: ATPAF2
  hgvsc: ENST00000444058.1:c.246C>T
  hgvsp: ENST00000444058.1:c.246C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000417190
  ensembl transcript: ENST00000474627
  gene symbol: ATPAF2
  hgvsc: ENST00000474627.3:c.246C>T
  hgvsp: ENST00000474627.3:c.246C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000577586
  gene symbol: ATPAF2
  hgvsc: ENST00000577586.1:n.397C>T
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000497871
  gene symbol: ATPAF2
  hgvsc: ENST00000497871.1:n.434C>T
  variant of: http://identifiers.org/hgnc/18802
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2298
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8961
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28484
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12709
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7458
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8007
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2242
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro82Pro
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

17-17931629-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17931629
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17931629
    reference: chr 17
allele count: 61
allele frequency: 5.032421997459039e-4
allele num: 121214
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463920
  ensembl transcript: ENST00000462733
  gene symbol: ATPAF2
  hgvsc: ENST00000462733.1:c.178+300G>A
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000397198
  ensembl transcript: ENST00000444058
  gene symbol: ATPAF2
  hgvsc: ENST00000444058.1:c.241G>A
  hgvsp: ENSP00000397198.1:p.Val81Ile
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000577586
  gene symbol: ATPAF2
  hgvsc: ENST00000577586.1:n.392G>A
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000497871
  gene symbol: ATPAF2
  hgvsc: ENST00000497871.1:n.429G>A
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000417190
  ensembl transcript: ENST00000474627
  gene symbol: ATPAF2
  hgvsc: ENST00000474627.3:c.241G>A
  hgvsp: ENSP00000417190.2:p.Val81Ile
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463861
  ensembl transcript: ENST00000585101
  gene symbol: ATPAF2
  hgvsc: ENST00000585101.1:c.178+300G>A
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000462899
  ensembl transcript: ENST00000584205
  gene symbol: ATPAF2
  hgvsc: ENST00000584205.1:c.178+300G>A
  variant of: http://identifiers.org/hgnc/18802
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8948
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12691
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2280
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 28449
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 9.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 731
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8011
  bin: 9.75e1
  variant carriers: 61
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1433
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Val81Ile
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: East Asian
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

17-17931630-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17931630
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17931630
    reference: chr 17
allele count: 5
allele frequency: 4.125072188763303e-5
allele num: 121210
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000497871
  gene symbol: ATPAF2
  hgvsc: ENST00000497871.1:n.428C>T
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000577586
  gene symbol: ATPAF2
  hgvsc: ENST00000577586.1:n.391C>T
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000417190
  ensembl transcript: ENST00000474627
  gene symbol: ATPAF2
  hgvsc: ENST00000474627.3:c.240C>T
  hgvsp: ENST00000474627.3:c.240C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463861
  ensembl transcript: ENST00000585101
  gene symbol: ATPAF2
  hgvsc: ENST00000585101.1:c.178+299C>T
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000397198
  ensembl transcript: ENST00000444058
  gene symbol: ATPAF2
  hgvsc: ENST00000444058.1:c.240C>T
  hgvsp: ENST00000444058.1:c.240C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463920
  ensembl transcript: ENST00000462733
  gene symbol: ATPAF2
  hgvsc: ENST00000462733.1:c.178+299C>T
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000462899
  ensembl transcript: ENST00000584205
  gene symbol: ATPAF2
  hgvsc: ENST00000584205.1:c.178+299C>T
  variant of: http://identifiers.org/hgnc/18802
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12713
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2273
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8961
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28445
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7986
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Thr80Thr
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: East Asian
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD

17-17931636-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17931636
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17931636
    reference: chr 17
allele count: 1
allele frequency: 8.260639703938672e-6
allele num: 121056
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000462899
  ensembl transcript: ENST00000584205
  gene symbol: ATPAF2
  hgvsc: ENST00000584205.1:c.178+293C>T
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000577586
  gene symbol: ATPAF2
  hgvsc: ENST00000577586.1:n.385C>T
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000397198
  ensembl transcript: ENST00000444058
  gene symbol: ATPAF2
  hgvsc: ENST00000444058.1:c.234C>T
  hgvsp: ENST00000444058.1:c.234C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463920
  ensembl transcript: ENST00000462733
  gene symbol: ATPAF2
  hgvsc: ENST00000462733.1:c.178+293C>T
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463861
  ensembl transcript: ENST00000585101
  gene symbol: ATPAF2
  hgvsc: ENST00000585101.1:c.178+293C>T
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000417190
  ensembl transcript: ENST00000474627
  gene symbol: ATPAF2
  hgvsc: ENST00000474627.3:c.234C>T
  hgvsp: ENST00000474627.3:c.234C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000497871
  gene symbol: ATPAF2
  hgvsc: ENST00000497871.1:n.422C>T
  variant of: http://identifiers.org/hgnc/18802
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28389
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2249
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8878
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12728
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1423
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7401
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 724
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Leu78Leu
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: DP

17-17931644-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17931644
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17931644
    reference: chr 17
allele count: 1
allele frequency: 8.277323444690924e-6
allele num: 120812
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463920
  ensembl transcript: ENST00000462733
  gene symbol: ATPAF2
  hgvsc: ENST00000462733.1:c.178+285G>A
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463861
  ensembl transcript: ENST00000585101
  gene symbol: ATPAF2
  hgvsc: ENST00000585101.1:c.178+285G>A
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000462899
  ensembl transcript: ENST00000584205
  gene symbol: ATPAF2
  hgvsc: ENST00000584205.1:c.178+285G>A
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000397198
  ensembl transcript: ENST00000444058
  gene symbol: ATPAF2
  hgvsc: ENST00000444058.1:c.226G>A
  hgvsp: ENSP00000397198.1:p.Ala76Thr
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000497871
  gene symbol: ATPAF2
  hgvsc: ENST00000497871.1:n.414G>A
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000417190
  ensembl transcript: ENST00000474627
  gene symbol: ATPAF2
  hgvsc: ENST00000474627.3:c.226G>A
  hgvsp: ENSP00000417190.2:p.Ala76Thr
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000577586
  gene symbol: ATPAF2
  hgvsc: ENST00000577586.1:n.377G>A
  variant of: http://identifiers.org/hgnc/18802
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8748
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2228
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12739
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28169
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 717
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1396
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 525
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ala76Thr
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: QD

17-17931645-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17931645
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17931645
    reference: chr 17
allele count: 1
allele frequency: 8.284043275842073e-6
allele num: 120714
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463861
  ensembl transcript: ENST00000585101
  gene symbol: ATPAF2
  hgvsc: ENST00000585101.1:c.178+284A>G
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000497871
  gene symbol: ATPAF2
  hgvsc: ENST00000497871.1:n.413A>G
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000397198
  ensembl transcript: ENST00000444058
  gene symbol: ATPAF2
  hgvsc: ENST00000444058.1:c.225A>G
  hgvsp: ENST00000444058.1:c.225A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000417190
  ensembl transcript: ENST00000474627
  gene symbol: ATPAF2
  hgvsc: ENST00000474627.3:c.225A>G
  hgvsp: ENST00000474627.3:c.225A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463920
  ensembl transcript: ENST00000462733
  gene symbol: ATPAF2
  hgvsc: ENST00000462733.1:c.178+284A>G
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000577586
  gene symbol: ATPAF2
  hgvsc: ENST00000577586.1:n.376A>G
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000462899
  ensembl transcript: ENST00000584205
  gene symbol: ATPAF2
  hgvsc: ENST00000584205.1:c.178+284A>G
  variant of: http://identifiers.org/hgnc/18802
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2227
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8690
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12750
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28095
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7284
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7969
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2403
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gln75Gln
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

17-17931661-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17931661
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17931661
    reference: chr 17
allele count: 1
allele frequency: 8.345573507811457e-6
allele num: 119824
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000577586
  gene symbol: ATPAF2
  hgvsc: ENST00000577586.1:n.360A>G
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000462899
  ensembl transcript: ENST00000584205
  gene symbol: ATPAF2
  hgvsc: ENST00000584205.1:c.178+268A>G
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000397198
  ensembl transcript: ENST00000444058
  gene symbol: ATPAF2
  hgvsc: ENST00000444058.1:c.209A>G
  hgvsp: ENSP00000397198.1:p.Lys70Arg
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000497871
  gene symbol: ATPAF2
  hgvsc: ENST00000497871.1:n.397A>G
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000417190
  ensembl transcript: ENST00000474627
  gene symbol: ATPAF2
  hgvsc: ENST00000474627.3:c.209A>G
  hgvsp: ENSP00000417190.2:p.Lys70Arg
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463861
  ensembl transcript: ENST00000585101
  gene symbol: ATPAF2
  hgvsc: ENST00000585101.1:c.178+268A>G
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463920
  ensembl transcript: ENST00000462733
  gene symbol: ATPAF2
  hgvsc: ENST00000462733.1:c.178+268A>G
  variant of: http://identifiers.org/hgnc/18802
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12965
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27340
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2128
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8216
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6921
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1382
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2241
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2047
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 693
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Lys70Arg
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Other
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS

17-17931667-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17931667
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17931667
    reference: chr 17
allele count: 1
allele frequency: 8.391796180054379e-6
allele num: 119164
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463920
  ensembl transcript: ENST00000462733
  gene symbol: ATPAF2
  hgvsc: ENST00000462733.1:c.178+262A>G
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463861
  ensembl transcript: ENST00000585101
  gene symbol: ATPAF2
  hgvsc: ENST00000585101.1:c.178+262A>G
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000577586
  gene symbol: ATPAF2
  hgvsc: ENST00000577586.1:n.354A>G
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000497871
  gene symbol: ATPAF2
  hgvsc: ENST00000497871.1:n.391A>G
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000417190
  ensembl transcript: ENST00000474627
  gene symbol: ATPAF2
  hgvsc: ENST00000474627.3:c.203A>G
  hgvsp: ENSP00000417190.2:p.His68Arg
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000462899
  ensembl transcript: ENST00000584205
  gene symbol: ATPAF2
  hgvsc: ENST00000584205.1:c.178+262A>G
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000397198
  ensembl transcript: ENST00000444058
  gene symbol: ATPAF2
  hgvsc: ENST00000444058.1:c.203A>G
  hgvsp: ENSP00000397198.1:p.His68Arg
  variant of: http://identifiers.org/hgnc/18802
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26711
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12980
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2095
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7977
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1289
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6732
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 684
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 2.75e1
  variant carriers: 0
hgvs: p.His68Arg
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
reference allele: T
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP

17-17931675-GT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17931675
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17931674
    reference: chr 17
allele count: 1
allele frequency: 8.456230550669733e-6
allele num: 118256
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000462899
  ensembl transcript: ENST00000584205
  gene symbol: ATPAF2
  hgvsc: ENST00000584205.1:c.178+253delA
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000397198
  ensembl transcript: ENST00000444058
  gene symbol: ATPAF2
  hgvsc: ENST00000444058.1:c.194delA
  hgvsp: ENSP00000397198.1:p.Asn65ThrfsTer7
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000497871
  gene symbol: ATPAF2
  hgvsc: ENST00000497871.1:n.382delA
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000577586
  gene symbol: ATPAF2
  hgvsc: ENST00000577586.1:n.345delA
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463920
  ensembl transcript: ENST00000462733
  gene symbol: ATPAF2
  hgvsc: ENST00000462733.1:c.178+253delA
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000417190
  ensembl transcript: ENST00000474627
  gene symbol: ATPAF2
  hgvsc: ENST00000474627.3:c.194delA
  hgvsp: ENSP00000417190.2:p.Asn65ThrfsTer7
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463861
  ensembl transcript: ENST00000585101
  gene symbol: ATPAF2
  hgvsc: ENST00000585101.1:c.178+253delA
  variant of: http://identifiers.org/hgnc/18802
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2153
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25851
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12994
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2048
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7597
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 496
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7936
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2859
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2055
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34937
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1215
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Asn65ThrfsTer7
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: GT
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ

17-17931684-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17931684
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17931684
    reference: chr 17
allele count: 1
allele frequency: 8.568686591719221e-6
allele num: 116704
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000397198
  ensembl transcript: ENST00000444058
  gene symbol: ATPAF2
  hgvsc: ENST00000444058.1:c.186T>C
  hgvsp: ENST00000444058.1:c.186T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000417190
  ensembl transcript: ENST00000474627
  gene symbol: ATPAF2
  hgvsc: ENST00000474627.3:c.186T>C
  hgvsp: ENST00000474627.3:c.186T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000497871
  gene symbol: ATPAF2
  hgvsc: ENST00000497871.1:n.374T>C
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463861
  ensembl transcript: ENST00000585101
  gene symbol: ATPAF2
  hgvsc: ENST00000585101.1:c.178+245T>C
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000462899
  ensembl transcript: ENST00000584205
  gene symbol: ATPAF2
  hgvsc: ENST00000584205.1:c.178+245T>C
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000577586
  gene symbol: ATPAF2
  hgvsc: ENST00000577586.1:n.337T>C
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463920
  ensembl transcript: ENST00000462733
  gene symbol: ATPAF2
  hgvsc: ENST00000462733.1:c.178+245T>C
  variant of: http://identifiers.org/hgnc/18802
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12068
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2292
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3994
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24318
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7168
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1986
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6081
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 977
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7925
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4635
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Phe62Phe
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD

17-17931695-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17931695
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17931695
    reference: chr 17
allele count: 1
allele frequency: 8.773622979873309e-6
allele num: 113978
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000462899
  ensembl transcript: ENST00000584205
  gene symbol: ATPAF2
  hgvsc: ENST00000584205.1:c.178+234C>G
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463861
  ensembl transcript: ENST00000585101
  gene symbol: ATPAF2
  hgvsc: ENST00000585101.1:c.178+234C>G
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000417190
  ensembl transcript: ENST00000474627
  gene symbol: ATPAF2
  hgvsc: ENST00000474627.3:c.179-4C>G
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000577586
  gene symbol: ATPAF2
  hgvsc: ENST00000577586.1:n.330-4C>G
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000497871
  gene symbol: ATPAF2
  hgvsc: ENST00000497871.1:n.367-4C>G
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000397198
  ensembl transcript: ENST00000444058
  gene symbol: ATPAF2
  hgvsc: ENST00000444058.1:c.179-4C>G
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463920
  ensembl transcript: ENST00000462733
  gene symbol: ATPAF2
  hgvsc: ENST00000462733.1:c.178+234C>G
  variant of: http://identifiers.org/hgnc/18802
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5978
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2123
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8421
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20002
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3489
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1882
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10776
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1168
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1084
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1999
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5081
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 574
  bin: 5.25e1
  variant carriers: 0
hgvs: c.179-4C>G
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum

http://identifiers.org/exac.variant/17-17931710-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17931710
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17931710
    reference: chr 17
allele count: 1
allele frequency: 8.955758552749419e-6
allele num: 111660
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000417190
  ensembl transcript: ENST00000474627
  gene symbol: ATPAF2
  hgvsc: ENST00000474627.3:c.179-19T>G
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463861
  ensembl transcript: ENST00000585101
  gene symbol: ATPAF2
  hgvsc: ENST00000585101.1:c.178+219T>G
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000577586
  gene symbol: ATPAF2
  hgvsc: ENST00000577586.1:n.330-19T>G
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463920
  ensembl transcript: ENST00000462733
  gene symbol: ATPAF2
  hgvsc: ENST00000462733.1:c.178+219T>G
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000462899
  ensembl transcript: ENST00000584205
  gene symbol: ATPAF2
  hgvsc: ENST00000584205.1:c.178+219T>G
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000397198
  ensembl transcript: ENST00000444058
  gene symbol: ATPAF2
  hgvsc: ENST00000444058.1:c.179-19T>G
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000497871
  gene symbol: ATPAF2
  hgvsc: ENST00000497871.1:n.367-19T>G
  variant of: http://identifiers.org/hgnc/18802
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1799
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8685
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13932
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13746
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4395
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4606
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5262
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 701
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 656
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10961
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4755
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7906
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 721
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
reference allele: A
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum

17-17931718-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17931718
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17931717
    reference: chr 17
allele count: 1
allele frequency: 9.076386871914029e-6
allele num: 110176
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000497871
  gene symbol: ATPAF2
  hgvsc: ENST00000497871.1:n.367-28delC
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000577586
  gene symbol: ATPAF2
  hgvsc: ENST00000577586.1:n.330-28delC
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463861
  ensembl transcript: ENST00000585101
  gene symbol: ATPAF2
  hgvsc: ENST00000585101.1:c.178+210delC
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000397198
  ensembl transcript: ENST00000444058
  gene symbol: ATPAF2
  hgvsc: ENST00000444058.1:c.179-28delC
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463920
  ensembl transcript: ENST00000462733
  gene symbol: ATPAF2
  hgvsc: ENST00000462733.1:c.178+210delC
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000417190
  ensembl transcript: ENST00000474627
  gene symbol: ATPAF2
  hgvsc: ENST00000474627.3:c.179-28delC
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000462899
  ensembl transcript: ENST00000584205
  gene symbol: ATPAF2
  hgvsc: ENST00000584205.1:c.178+210delC
  variant of: http://identifiers.org/hgnc/18802
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15603
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4817
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1778
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7212
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4105
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10785
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7923
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 990
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4174
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13928
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 713
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 675
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1180
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 414
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1208
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7906
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1013
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: AG
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: QD

17-17931720-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17931720
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17931720
    reference: chr 17
allele count: 1
allele frequency: 9.105477855477855e-6
allele num: 109824
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463861
  ensembl transcript: ENST00000585101
  gene symbol: ATPAF2
  hgvsc: ENST00000585101.1:c.178+209C>T
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000577586
  gene symbol: ATPAF2
  hgvsc: ENST00000577586.1:n.330-29C>T
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000497871
  gene symbol: ATPAF2
  hgvsc: ENST00000497871.1:n.367-29C>T
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000462899
  ensembl transcript: ENST00000584205
  gene symbol: ATPAF2
  hgvsc: ENST00000584205.1:c.178+209C>T
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000417190
  ensembl transcript: ENST00000474627
  gene symbol: ATPAF2
  hgvsc: ENST00000474627.3:c.179-29C>T
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463920
  ensembl transcript: ENST00000462733
  gene symbol: ATPAF2
  hgvsc: ENST00000462733.1:c.178+209C>T
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000397198
  ensembl transcript: ENST00000444058
  gene symbol: ATPAF2
  hgvsc: ENST00000444058.1:c.179-29C>T
  variant of: http://identifiers.org/hgnc/18802
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15865
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10058
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4920
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6874
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1773
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8690
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3974
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3580
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1142
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12833
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 667
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7902
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1432
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 810
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11345
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4402
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/17-17931882-C-CA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17931882
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17931883
    reference: chr 17
allele count: 1
allele frequency: 8.718851901581599e-6
allele num: 114694
alternate allele: CA
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463920
  ensembl transcript: ENST00000462733
  gene symbol: ATPAF2
  hgvsc: ENST00000462733.1:c.178+46dupT
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000397198
  ensembl transcript: ENST00000444058
  gene symbol: ATPAF2
  hgvsc: ENST00000444058.1:c.178+46dupT
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000417190
  ensembl transcript: ENST00000474627
  gene symbol: ATPAF2
  hgvsc: ENST00000474627.3:c.178+46dupT
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000497871
  gene symbol: ATPAF2
  hgvsc: ENST00000497871.1:n.366+46dupT
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000577586
  gene symbol: ATPAF2
  hgvsc: ENST00000577586.1:n.329+46dupT
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000462899
  ensembl transcript: ENST00000584205
  gene symbol: ATPAF2
  hgvsc: ENST00000584205.1:c.178+46dupT
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463861
  ensembl transcript: ENST00000585101
  gene symbol: ATPAF2
  hgvsc: ENST00000585101.1:c.178+46dupT
  variant of: http://identifiers.org/hgnc/18802
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 5731
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6553
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5976
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2356
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3508
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4579
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2022
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1421
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3312
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1417
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1990
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6446
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4704
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2610
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3137
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2049
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4130
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1554
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3742
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1455
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1144
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1069
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1435
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1066
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23696
  bin: 9.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: African
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/17-17931884-C-CA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17931884
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17931885
    reference: chr 17
allele count: 13737
allele frequency: 2.035593622191927e-1
allele num: 67484
alternate allele: CA
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000462899
  ensembl transcript: ENST00000584205
  gene symbol: ATPAF2
  hgvsc: ENST00000584205.1:c.178+44dupT
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463861
  ensembl transcript: ENST00000585101
  gene symbol: ATPAF2
  hgvsc: ENST00000585101.1:c.178+44dupT
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000417190
  ensembl transcript: ENST00000474627
  gene symbol: ATPAF2
  hgvsc: ENST00000474627.3:c.178+44dupT
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000577586
  gene symbol: ATPAF2
  hgvsc: ENST00000577586.1:n.329+44dupT
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000397198
  ensembl transcript: ENST00000444058
  gene symbol: ATPAF2
  hgvsc: ENST00000444058.1:c.178+44dupT
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463920
  ensembl transcript: ENST00000462733
  gene symbol: ATPAF2
  hgvsc: ENST00000462733.1:c.178+44dupT
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000497871
  gene symbol: ATPAF2
  hgvsc: ENST00000497871.1:n.366+44dupT
  variant of: http://identifiers.org/hgnc/18802
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6352
  bin: 1.25e1
  variant carriers: 2417
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3968
  bin: 3.75e1
  variant carriers: 961
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 6.25e1
  variant carriers: 81
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 2520
  bin: 7.5e0
  variant carriers: 774
genotype depth: GenotypeDepth
  all individuals: 9483
  bin: 1.75e1
  variant carriers: 3675
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 10025
  bin: 2.25e1
  variant carriers: 3766
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 5.75e1
  variant carriers: 154
genotype depth: GenotypeDepth
  all individuals: 8236
  bin: 2.75e1
  variant carriers: 2703
genotype depth: GenotypeDepth
  all individuals: 1964
  bin: 4.75e1
  variant carriers: 412
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 6.75e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 5817
  bin: 3.25e1
  variant carriers: 1572
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 2.5e0
  variant carriers: 59
genotype depth: GenotypeDepth
  all individuals: 1341
  bin: 5.25e1
  variant carriers: 254
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2877
  bin: 4.25e1
  variant carriers: 626
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1159
  bin: 8.25e1
  variant carriers: 473
genotype quality: GenotypeQuality
  all individuals: 2650
  bin: 7.5e0
  variant carriers: 1099
genotype quality: GenotypeQuality
  all individuals: 1674
  bin: 5.75e1
  variant carriers: 691
genotype quality: GenotypeQuality
  all individuals: 1955
  bin: 4.75e1
  variant carriers: 813
genotype quality: GenotypeQuality
  all individuals: 2248
  bin: 2.75e1
  variant carriers: 927
genotype quality: GenotypeQuality
  all individuals: 12704
  bin: 2.5e0
  variant carriers: 1096
genotype quality: GenotypeQuality
  all individuals: 2265
  bin: 3.25e1
  variant carriers: 988
genotype quality: GenotypeQuality
  all individuals: 1810
  bin: 5.25e1
  variant carriers: 733
genotype quality: GenotypeQuality
  all individuals: 1465
  bin: 6.75e1
  variant carriers: 586
genotype quality: GenotypeQuality
  all individuals: 2194
  bin: 3.75e1
  variant carriers: 951
num of homozygotes: 963
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/17-17931884-C-CAA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17931884
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17931886
    reference: chr 17
allele count: 11723
allele frequency: 1.737152510224646e-1
allele num: 67484
alternate allele: CAA
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000577586
  gene symbol: ATPAF2
  hgvsc: ENST00000577586.1:n.329+43_329+44dupTT
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000417190
  ensembl transcript: ENST00000474627
  gene symbol: ATPAF2
  hgvsc: ENST00000474627.3:c.178+43_178+44dupTT
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000397198
  ensembl transcript: ENST00000444058
  gene symbol: ATPAF2
  hgvsc: ENST00000444058.1:c.178+43_178+44dupTT
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000462899
  ensembl transcript: ENST00000584205
  gene symbol: ATPAF2
  hgvsc: ENST00000584205.1:c.178+43_178+44dupTT
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463861
  ensembl transcript: ENST00000585101
  gene symbol: ATPAF2
  hgvsc: ENST00000585101.1:c.178+43_178+44dupTT
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463920
  ensembl transcript: ENST00000462733
  gene symbol: ATPAF2
  hgvsc: ENST00000462733.1:c.178+43_178+44dupTT
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000497871
  gene symbol: ATPAF2
  hgvsc: ENST00000497871.1:n.366+43_366+44dupTT
  variant of: http://identifiers.org/hgnc/18802
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 8236
  bin: 2.75e1
  variant carriers: 2134
genotype depth: GenotypeDepth
  all individuals: 5817
  bin: 3.25e1
  variant carriers: 1381
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 2.5e0
  variant carriers: 67
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 5.75e1
  variant carriers: 111
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 6.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 2877
  bin: 4.25e1
  variant carriers: 489
genotype depth: GenotypeDepth
  all individuals: 9483
  bin: 1.75e1
  variant carriers: 2981
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 6.25e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2520
  bin: 7.5e0
  variant carriers: 729
genotype depth: GenotypeDepth
  all individuals: 3968
  bin: 3.75e1
  variant carriers: 755
genotype depth: GenotypeDepth
  all individuals: 10025
  bin: 2.25e1
  variant carriers: 2922
genotype depth: GenotypeDepth
  all individuals: 1341
  bin: 5.25e1
  variant carriers: 146
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1964
  bin: 4.75e1
  variant carriers: 265
genotype depth: GenotypeDepth
  all individuals: 6352
  bin: 1.25e1
  variant carriers: 2023
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 959
  bin: 9.25e1
  variant carriers: 311
genotype quality: GenotypeQuality
  all individuals: 1265
  bin: 7.75e1
  variant carriers: 397
genotype quality: GenotypeQuality
  all individuals: 2406
  bin: 2.25e1
  variant carriers: 671
genotype quality: GenotypeQuality
  all individuals: 1955
  bin: 4.75e1
  variant carriers: 557
genotype quality: GenotypeQuality
  all individuals: 1377
  bin: 7.25e1
  variant carriers: 391
genotype quality: GenotypeQuality
  all individuals: 2341
  bin: 1.75e1
  variant carriers: 674
genotype quality: GenotypeQuality
  all individuals: 12704
  bin: 2.5e0
  variant carriers: 781
genotype quality: GenotypeQuality
  all individuals: 2538
  bin: 1.25e1
  variant carriers: 699
genotype quality: GenotypeQuality
  all individuals: 2265
  bin: 3.25e1
  variant carriers: 640
genotype quality: GenotypeQuality
  all individuals: 9686
  bin: 9.75e1
  variant carriers: 3865
num of homozygotes: 1024
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD

http://identifiers.org/exac.variant/17-17931884-C-CAAA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17931884
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17931887
    reference: chr 17
allele count: 4313
allele frequency: 6.391144567601209e-2
allele num: 67484
alternate allele: CAAA
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000462899
  ensembl transcript: ENST00000584205
  gene symbol: ATPAF2
  hgvsc: ENST00000584205.1:c.178+42_178+44dupTTT
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000497871
  gene symbol: ATPAF2
  hgvsc: ENST00000497871.1:n.366+42_366+44dupTTT
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000577586
  gene symbol: ATPAF2
  hgvsc: ENST00000577586.1:n.329+42_329+44dupTTT
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463920
  ensembl transcript: ENST00000462733
  gene symbol: ATPAF2
  hgvsc: ENST00000462733.1:c.178+42_178+44dupTTT
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463861
  ensembl transcript: ENST00000585101
  gene symbol: ATPAF2
  hgvsc: ENST00000585101.1:c.178+42_178+44dupTTT
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000417190
  ensembl transcript: ENST00000474627
  gene symbol: ATPAF2
  hgvsc: ENST00000474627.3:c.178+42_178+44dupTTT
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000397198
  ensembl transcript: ENST00000444058
  gene symbol: ATPAF2
  hgvsc: ENST00000444058.1:c.178+42_178+44dupTTT
  variant of: http://identifiers.org/hgnc/18802
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 5.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 10025
  bin: 2.25e1
  variant carriers: 1087
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2520
  bin: 7.5e0
  variant carriers: 350
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 2.5e0
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9483
  bin: 1.75e1
  variant carriers: 1245
genotype depth: GenotypeDepth
  all individuals: 8236
  bin: 2.75e1
  variant carriers: 725
genotype depth: GenotypeDepth
  all individuals: 6352
  bin: 1.25e1
  variant carriers: 1004
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3968
  bin: 3.75e1
  variant carriers: 222
genotype depth: GenotypeDepth
  all individuals: 5817
  bin: 3.25e1
  variant carriers: 453
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1341
  bin: 5.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 6.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 2877
  bin: 4.25e1
  variant carriers: 138
genotype depth: GenotypeDepth
  all individuals: 1964
  bin: 4.75e1
  variant carriers: 75
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1265
  bin: 7.75e1
  variant carriers: 140
genotype quality: GenotypeQuality
  all individuals: 959
  bin: 9.25e1
  variant carriers: 97
genotype quality: GenotypeQuality
  all individuals: 12704
  bin: 2.5e0
  variant carriers: 285
genotype quality: GenotypeQuality
  all individuals: 1051
  bin: 8.75e1
  variant carriers: 121
genotype quality: GenotypeQuality
  all individuals: 2538
  bin: 1.25e1
  variant carriers: 272
genotype quality: GenotypeQuality
  all individuals: 2248
  bin: 2.75e1
  variant carriers: 277
genotype quality: GenotypeQuality
  all individuals: 1955
  bin: 4.75e1
  variant carriers: 210
genotype quality: GenotypeQuality
  all individuals: 1674
  bin: 5.75e1
  variant carriers: 167
genotype quality: GenotypeQuality
  all individuals: 2406
  bin: 2.25e1
  variant carriers: 273
genotype quality: GenotypeQuality
  all individuals: 1810
  bin: 5.25e1
  variant carriers: 198
num of homozygotes: 304
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP

http://identifiers.org/exac.variant/17-17931884-CA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17931884
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17931883
    reference: chr 17
allele count: 7523
allele frequency: 1.114782763321676e-1
allele num: 67484
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000397198
  ensembl transcript: ENST00000444058
  gene symbol: ATPAF2
  hgvsc: ENST00000444058.1:c.178+44delT
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000462899
  ensembl transcript: ENST00000584205
  gene symbol: ATPAF2
  hgvsc: ENST00000584205.1:c.178+44delT
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000417190
  ensembl transcript: ENST00000474627
  gene symbol: ATPAF2
  hgvsc: ENST00000474627.3:c.178+44delT
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463920
  ensembl transcript: ENST00000462733
  gene symbol: ATPAF2
  hgvsc: ENST00000462733.1:c.178+44delT
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000497871
  gene symbol: ATPAF2
  hgvsc: ENST00000497871.1:n.366+44delT
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000577586
  gene symbol: ATPAF2
  hgvsc: ENST00000577586.1:n.329+44delT
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463861
  ensembl transcript: ENST00000585101
  gene symbol: ATPAF2
  hgvsc: ENST00000585101.1:c.178+44delT
  variant of: http://identifiers.org/hgnc/18802
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8236
  bin: 2.75e1
  variant carriers: 2061
genotype depth: GenotypeDepth
  all individuals: 10025
  bin: 2.25e1
  variant carriers: 2367
genotype depth: GenotypeDepth
  all individuals: 6352
  bin: 1.25e1
  variant carriers: 590
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 6.25e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 5.75e1
  variant carriers: 91
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1964
  bin: 4.75e1
  variant carriers: 218
genotype depth: GenotypeDepth
  all individuals: 3968
  bin: 3.75e1
  variant carriers: 766
genotype depth: GenotypeDepth
  all individuals: 2877
  bin: 4.25e1
  variant carriers: 400
genotype depth: GenotypeDepth
  all individuals: 9483
  bin: 1.75e1
  variant carriers: 1765
genotype depth: GenotypeDepth
  all individuals: 2520
  bin: 7.5e0
  variant carriers: 89
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 6.75e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 5817
  bin: 3.25e1
  variant carriers: 1399
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 1341
  bin: 5.25e1
  variant carriers: 133
genotype quality: GenotypeQuality
  all individuals: 2265
  bin: 3.25e1
  variant carriers: 568
genotype quality: GenotypeQuality
  all individuals: 12704
  bin: 2.5e0
  variant carriers: 603
genotype quality: GenotypeQuality
  all individuals: 1590
  bin: 6.25e1
  variant carriers: 440
genotype quality: GenotypeQuality
  all individuals: 2194
  bin: 3.75e1
  variant carriers: 608
genotype quality: GenotypeQuality
  all individuals: 2248
  bin: 2.75e1
  variant carriers: 628
genotype quality: GenotypeQuality
  all individuals: 1377
  bin: 7.25e1
  variant carriers: 309
genotype quality: GenotypeQuality
  all individuals: 1159
  bin: 8.25e1
  variant carriers: 230
genotype quality: GenotypeQuality
  all individuals: 2538
  bin: 1.25e1
  variant carriers: 660
genotype quality: GenotypeQuality
  all individuals: 2341
  bin: 1.75e1
  variant carriers: 555
genotype quality: GenotypeQuality
  all individuals: 9686
  bin: 9.75e1
  variant carriers: 1017
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: Other
reference allele: CA
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP

http://identifiers.org/exac.variant/17-17931884-C-CAAAA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17931884
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17931888
    reference: chr 17
allele count: 1432
allele frequency: 2.121984470392982e-2
allele num: 67484
alternate allele: CAAAA
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000577586
  gene symbol: ATPAF2
  hgvsc: ENST00000577586.1:n.329+41_329+44dupTTTT
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000462899
  ensembl transcript: ENST00000584205
  gene symbol: ATPAF2
  hgvsc: ENST00000584205.1:c.178+41_178+44dupTTTT
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000417190
  ensembl transcript: ENST00000474627
  gene symbol: ATPAF2
  hgvsc: ENST00000474627.3:c.178+41_178+44dupTTTT
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463920
  ensembl transcript: ENST00000462733
  gene symbol: ATPAF2
  hgvsc: ENST00000462733.1:c.178+41_178+44dupTTTT
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463861
  ensembl transcript: ENST00000585101
  gene symbol: ATPAF2
  hgvsc: ENST00000585101.1:c.178+41_178+44dupTTTT
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000497871
  gene symbol: ATPAF2
  hgvsc: ENST00000497871.1:n.366+41_366+44dupTTTT
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000397198
  ensembl transcript: ENST00000444058
  gene symbol: ATPAF2
  hgvsc: ENST00000444058.1:c.178+41_178+44dupTTTT
  variant of: http://identifiers.org/hgnc/18802
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3968
  bin: 3.75e1
  variant carriers: 97
genotype depth: GenotypeDepth
  all individuals: 10025
  bin: 2.25e1
  variant carriers: 359
genotype depth: GenotypeDepth
  all individuals: 1964
  bin: 4.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 2877
  bin: 4.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 5.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 6.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 8236
  bin: 2.75e1
  variant carriers: 270
genotype depth: GenotypeDepth
  all individuals: 5817
  bin: 3.25e1
  variant carriers: 178
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 2.5e0
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 2520
  bin: 7.5e0
  variant carriers: 202
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6352
  bin: 1.25e1
  variant carriers: 354
genotype depth: GenotypeDepth
  all individuals: 9483
  bin: 1.75e1
  variant carriers: 378
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1341
  bin: 5.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1051
  bin: 8.75e1
  variant carriers: 48
genotype quality: GenotypeQuality
  all individuals: 1955
  bin: 4.75e1
  variant carriers: 65
genotype quality: GenotypeQuality
  all individuals: 2406
  bin: 2.25e1
  variant carriers: 100
genotype quality: GenotypeQuality
  all individuals: 1674
  bin: 5.75e1
  variant carriers: 69
genotype quality: GenotypeQuality
  all individuals: 1159
  bin: 8.25e1
  variant carriers: 57
genotype quality: GenotypeQuality
  all individuals: 2265
  bin: 3.25e1
  variant carriers: 99
genotype quality: GenotypeQuality
  all individuals: 1810
  bin: 5.25e1
  variant carriers: 82
genotype quality: GenotypeQuality
  all individuals: 1465
  bin: 6.75e1
  variant carriers: 54
genotype quality: GenotypeQuality
  all individuals: 1265
  bin: 7.75e1
  variant carriers: 55
genotype quality: GenotypeQuality
  all individuals: 2157
  bin: 4.25e1
  variant carriers: 75
num of homozygotes: 82
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: African
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD

http://identifiers.org/exac.variant/17-17931884-C-CAAAAA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17931884
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17931889
    reference: chr 17
allele count: 358
allele frequency: 5.304961175982455e-3
allele num: 67484
alternate allele: CAAAAA
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000577586
  gene symbol: ATPAF2
  hgvsc: ENST00000577586.1:n.329+40_329+44dupTTTTT
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463920
  ensembl transcript: ENST00000462733
  gene symbol: ATPAF2
  hgvsc: ENST00000462733.1:c.178+40_178+44dupTTTTT
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000462899
  ensembl transcript: ENST00000584205
  gene symbol: ATPAF2
  hgvsc: ENST00000584205.1:c.178+40_178+44dupTTTTT
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000397198
  ensembl transcript: ENST00000444058
  gene symbol: ATPAF2
  hgvsc: ENST00000444058.1:c.178+40_178+44dupTTTTT
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463861
  ensembl transcript: ENST00000585101
  gene symbol: ATPAF2
  hgvsc: ENST00000585101.1:c.178+40_178+44dupTTTTT
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000497871
  gene symbol: ATPAF2
  hgvsc: ENST00000497871.1:n.366+40_366+44dupTTTTT
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000417190
  ensembl transcript: ENST00000474627
  gene symbol: ATPAF2
  hgvsc: ENST00000474627.3:c.178+40_178+44dupTTTTT
  variant of: http://identifiers.org/hgnc/18802
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3968
  bin: 3.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 8236
  bin: 2.75e1
  variant carriers: 70
genotype depth: GenotypeDepth
  all individuals: 1341
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9483
  bin: 1.75e1
  variant carriers: 88
genotype depth: GenotypeDepth
  all individuals: 5817
  bin: 3.25e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 2.5e0
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6352
  bin: 1.25e1
  variant carriers: 90
genotype depth: GenotypeDepth
  all individuals: 2520
  bin: 7.5e0
  variant carriers: 59
genotype depth: GenotypeDepth
  all individuals: 10025
  bin: 2.25e1
  variant carriers: 93
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1964
  bin: 4.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2877
  bin: 4.25e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 12704
  bin: 2.5e0
  variant carriers: 32
genotype quality: GenotypeQuality
  all individuals: 959
  bin: 9.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 1590
  bin: 6.25e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 1465
  bin: 6.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 1810
  bin: 5.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 2341
  bin: 1.75e1
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 1674
  bin: 5.75e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 2265
  bin: 3.25e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 2538
  bin: 1.25e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 9686
  bin: 9.75e1
  variant carriers: 137
num of homozygotes: 6
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQ
site quality: InbreedingCoeff

17-17931901-AGAGGCAGTC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17931901
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17931892
    reference: chr 17
allele count: 2778
allele frequency: 2.347751128238933e-2
allele num: 118326
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000417190
  ensembl transcript: ENST00000474627
  gene symbol: ATPAF2
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000497871
  gene symbol: ATPAF2
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463920
  ensembl transcript: ENST00000462733
  gene symbol: ATPAF2
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000397198
  ensembl transcript: ENST00000444058
  gene symbol: ATPAF2
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000577586
  gene symbol: ATPAF2
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463861
  ensembl transcript: ENST00000585101
  gene symbol: ATPAF2
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000462899
  ensembl transcript: ENST00000584205
  gene symbol: ATPAF2
  variant of: http://identifiers.org/hgnc/18802
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 6333
  bin: 4.75e1
  variant carriers: 94
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4892
  bin: 3.75e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 4105
  bin: 6.25e1
  variant carriers: 210
genotype depth: GenotypeDepth
  all individuals: 1868
  bin: 7.75e1
  variant carriers: 221
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5826
  bin: 5.25e1
  variant carriers: 100
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5216
  bin: 5.75e1
  variant carriers: 160
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 9.25e1
  variant carriers: 131
genotype depth: GenotypeDepth
  all individuals: 1502
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1545
  bin: 8.25e1
  variant carriers: 198
genotype depth: GenotypeDepth
  all individuals: 4136
  bin: 3.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 5844
  bin: 9.75e1
  variant carriers: 1020
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2694
  bin: 2.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 5831
  bin: 4.25e1
  variant carriers: 84
genotype depth: GenotypeDepth
  all individuals: 2482
  bin: 7.25e1
  variant carriers: 243
genotype depth: GenotypeDepth
  all individuals: 3315
  bin: 6.75e1
  variant carriers: 226
genotype depth: GenotypeDepth
  all individuals: 1385
  bin: 8.75e1
  variant carriers: 192
genotype quality: GenotypeQuality
  all individuals: 556
  bin: 2.5e0
  variant carriers: 37
genotype quality: GenotypeQuality
  all individuals: 26980
  bin: 6.25e1
  variant carriers: 41
genotype quality: GenotypeQuality
  all individuals: 1099
  bin: 8.75e1
  variant carriers: 35
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 4.25e1
  variant carriers: 44
genotype quality: GenotypeQuality
  all individuals: 2508
  bin: 7.25e1
  variant carriers: 37
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 5.25e1
  variant carriers: 40
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 1.75e1
  variant carriers: 54
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 3.75e1
  variant carriers: 47
genotype quality: GenotypeQuality
  all individuals: 2179
  bin: 8.25e1
  variant carriers: 31
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 1.25e1
  variant carriers: 47
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 5.75e1
  variant carriers: 33
genotype quality: GenotypeQuality
  all individuals: 8620
  bin: 6.75e1
  variant carriers: 43
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: AGAGGCAGTC
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum

17-17931902-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17931902
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17931902
    reference: chr 17
allele count: 435
allele frequency: 6.38691489986492e-3
allele num: 68108
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000397198
  ensembl transcript: ENST00000444058
  gene symbol: ATPAF2
  hgvsc: ENST00000444058.1:c.178+27C>T
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463861
  ensembl transcript: ENST00000585101
  gene symbol: ATPAF2
  hgvsc: ENST00000585101.1:c.178+27C>T
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000462899
  ensembl transcript: ENST00000584205
  gene symbol: ATPAF2
  hgvsc: ENST00000584205.1:c.178+27C>T
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463920
  ensembl transcript: ENST00000462733
  gene symbol: ATPAF2
  hgvsc: ENST00000462733.1:c.178+27C>T
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000497871
  gene symbol: ATPAF2
  hgvsc: ENST00000497871.1:n.366+27C>T
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000577586
  gene symbol: ATPAF2
  hgvsc: ENST00000577586.1:n.329+27C>T
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000417190
  ensembl transcript: ENST00000474627
  gene symbol: ATPAF2
  hgvsc: ENST00000474627.3:c.178+27C>T
  variant of: http://identifiers.org/hgnc/18802
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1782
  bin: 7.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 5473
  bin: 3.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 3551
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1401
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1339
  bin: 7.75e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 8.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 1142
  bin: 8.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 4504
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 6273
  bin: 4.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 4421
  bin: 5.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 3154
  bin: 6.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 2249
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6326
  bin: 4.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 5528
  bin: 5.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 9.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 3153
  bin: 9.75e1
  variant carriers: 125
genotype depth: GenotypeDepth
  all individuals: 2299
  bin: 6.75e1
  variant carriers: 27
genotype quality: GenotypeQuality
  all individuals: 1158
  bin: 3.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 721
  bin: 9.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1243
  bin: 8.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 1146
  bin: 7.5e0
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 3013
  bin: 9.75e1
  variant carriers: 318
genotype quality: GenotypeQuality
  all individuals: 1214
  bin: 2.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 2207
  bin: 2.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 18307
  bin: 2.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1004
  bin: 1.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1332
  bin: 7.25e1
  variant carriers: 12
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: QD
site quality: MQ

17-17931903-AGGC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17931903
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17931900
    reference: chr 17
allele count: 3
allele frequency: 2.76004195263768e-5
allele num: 108694
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463920
  ensembl transcript: ENST00000462733
  gene symbol: ATPAF2
  hgvsc: ENST00000462733.1:c.178+23_178+25delGCC
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000497871
  gene symbol: ATPAF2
  hgvsc: ENST00000497871.1:n.366+23_366+25delGCC
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463861
  ensembl transcript: ENST00000585101
  gene symbol: ATPAF2
  hgvsc: ENST00000585101.1:c.178+23_178+25delGCC
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000417190
  ensembl transcript: ENST00000474627
  gene symbol: ATPAF2
  hgvsc: ENST00000474627.3:c.178+23_178+25delGCC
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000462899
  ensembl transcript: ENST00000584205
  gene symbol: ATPAF2
  hgvsc: ENST00000584205.1:c.178+23_178+25delGCC
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000577586
  gene symbol: ATPAF2
  hgvsc: ENST00000577586.1:n.329+23_329+25delGCC
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000397198
  ensembl transcript: ENST00000444058
  gene symbol: ATPAF2
  hgvsc: ENST00000444058.1:c.178+23_178+25delGCC
  variant of: http://identifiers.org/hgnc/18802
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6495
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2851
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6586
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2128
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4894
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4386
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1208
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1654
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5712
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2501
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1105
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2921
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5383
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3789
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3085
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1286
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3463
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2398
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: European (Finnish)
population: Latino
reference allele: AGGC
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ClippingRankSum

17-17931903-AGGCAGTC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17931903
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17931896
    reference: chr 17
allele count: 402
allele frequency: 3.698456216534491e-3
allele num: 108694
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000462899
  ensembl transcript: ENST00000584205
  gene symbol: ATPAF2
  hgvsc: ENST00000584205.1:c.178+19_178+25delGACTGCC
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000497871
  gene symbol: ATPAF2
  hgvsc: ENST00000497871.1:n.366+19_366+25delGACTGCC
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463861
  ensembl transcript: ENST00000585101
  gene symbol: ATPAF2
  hgvsc: ENST00000585101.1:c.178+19_178+25delGACTGCC
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000577586
  gene symbol: ATPAF2
  hgvsc: ENST00000577586.1:n.329+19_329+25delGACTGCC
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000397198
  ensembl transcript: ENST00000444058
  gene symbol: ATPAF2
  hgvsc: ENST00000444058.1:c.178+19_178+25delGACTGCC
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463920
  ensembl transcript: ENST00000462733
  gene symbol: ATPAF2
  hgvsc: ENST00000462733.1:c.178+19_178+25delGACTGCC
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000417190
  ensembl transcript: ENST00000474627
  gene symbol: ATPAF2
  hgvsc: ENST00000474627.3:c.178+19_178+25delGACTGCC
  variant of: http://identifiers.org/hgnc/18802
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 7.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 6586
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2921
  bin: 6.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 4894
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1208
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3789
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2501
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2128
  bin: 6.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1105
  bin: 8.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 5383
  bin: 5.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 4386
  bin: 5.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 6495
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 9.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1654
  bin: 7.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 8.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 5712
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2851
  bin: 9.75e1
  variant carriers: 225
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 1.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 3085
  bin: 8.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 856
  bin: 2.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1286
  bin: 2.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 2398
  bin: 9.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 5.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 6234
  bin: 6.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 1.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 16846
  bin: 9.75e1
  variant carriers: 298
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 4.25e1
  variant carriers: 6
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: AGGCAGTC
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

17-17931904-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17931904
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17931904
    reference: chr 17
allele count: 17
allele frequency: 1.619232674210386e-4
allele num: 104988
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000497871
  gene symbol: ATPAF2
  hgvsc: ENST00000497871.1:n.366+25C>T
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000462899
  ensembl transcript: ENST00000584205
  gene symbol: ATPAF2
  hgvsc: ENST00000584205.1:c.178+25C>T
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463920
  ensembl transcript: ENST00000462733
  gene symbol: ATPAF2
  hgvsc: ENST00000462733.1:c.178+25C>T
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000577586
  gene symbol: ATPAF2
  hgvsc: ENST00000577586.1:n.329+25C>T
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463861
  ensembl transcript: ENST00000585101
  gene symbol: ATPAF2
  hgvsc: ENST00000585101.1:c.178+25C>T
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000397198
  ensembl transcript: ENST00000444058
  gene symbol: ATPAF2
  hgvsc: ENST00000444058.1:c.178+25C>T
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000417190
  ensembl transcript: ENST00000474627
  gene symbol: ATPAF2
  hgvsc: ENST00000474627.3:c.178+25C>T
  variant of: http://identifiers.org/hgnc/18802
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4399
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5399
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2115
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6529
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2691
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4924
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2471
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1632
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2886
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3824
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5674
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6526
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1626
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1770
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2664
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 607
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2776
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 658
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6123
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

17-17931904-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17931904
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17931904
    reference: chr 17
allele count: 2
allele frequency: 1.904979616718101e-5
allele num: 104988
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000577586
  gene symbol: ATPAF2
  hgvsc: ENST00000577586.1:n.329+25C>A
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463861
  ensembl transcript: ENST00000585101
  gene symbol: ATPAF2
  hgvsc: ENST00000585101.1:c.178+25C>A
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000462899
  ensembl transcript: ENST00000584205
  gene symbol: ATPAF2
  hgvsc: ENST00000584205.1:c.178+25C>A
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463920
  ensembl transcript: ENST00000462733
  gene symbol: ATPAF2
  hgvsc: ENST00000462733.1:c.178+25C>A
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000417190
  ensembl transcript: ENST00000474627
  gene symbol: ATPAF2
  hgvsc: ENST00000474627.3:c.178+25C>A
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000397198
  ensembl transcript: ENST00000444058
  gene symbol: ATPAF2
  hgvsc: ENST00000444058.1:c.178+25C>A
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000497871
  gene symbol: ATPAF2
  hgvsc: ENST00000497871.1:n.366+25C>A
  variant of: http://identifiers.org/hgnc/18802
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 6529
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6526
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2471
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3824
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4924
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2886
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5674
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5399
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4399
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2691
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1632
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2115
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 600
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1770
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2169
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 586
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 649
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 618
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6123
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 658
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1626
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP

17-17931907-AGTC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17931907
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17931904
    reference: chr 17
allele count: 3
allele frequency: 2.757403628743175e-5
allele num: 108798
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463861
  ensembl transcript: ENST00000585101
  gene symbol: ATPAF2
  hgvsc: ENST00000585101.1:c.178+19_178+21delGAC
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000417190
  ensembl transcript: ENST00000474627
  gene symbol: ATPAF2
  hgvsc: ENST00000474627.3:c.178+19_178+21delGAC
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000397198
  ensembl transcript: ENST00000444058
  gene symbol: ATPAF2
  hgvsc: ENST00000444058.1:c.178+19_178+21delGAC
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000497871
  gene symbol: ATPAF2
  hgvsc: ENST00000497871.1:n.366+19_366+21delGAC
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000577586
  gene symbol: ATPAF2
  hgvsc: ENST00000577586.1:n.329+19_329+21delGAC
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000462899
  ensembl transcript: ENST00000584205
  gene symbol: ATPAF2
  hgvsc: ENST00000584205.1:c.178+19_178+21delGAC
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463920
  ensembl transcript: ENST00000462733
  gene symbol: ATPAF2
  hgvsc: ENST00000462733.1:c.178+19_178+21delGAC
  variant of: http://identifiers.org/hgnc/18802
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2859
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5304
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4042
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6548
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5717
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5013
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3218
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1260
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2090
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2499
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4379
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6423
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3126
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 477
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15617
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3163
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 779
  bin: 2.25e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: AGTC
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD

17-17931908-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17931908
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17931908
    reference: chr 17
allele count: 1
allele frequency: 9.174985320023488e-6
allele num: 108992
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000577586
  gene symbol: ATPAF2
  hgvsc: ENST00000577586.1:n.329+21C>G
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000417190
  ensembl transcript: ENST00000474627
  gene symbol: ATPAF2
  hgvsc: ENST00000474627.3:c.178+21C>G
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463920
  ensembl transcript: ENST00000462733
  gene symbol: ATPAF2
  hgvsc: ENST00000462733.1:c.178+21C>G
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463861
  ensembl transcript: ENST00000585101
  gene symbol: ATPAF2
  hgvsc: ENST00000585101.1:c.178+21C>G
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000462899
  ensembl transcript: ENST00000584205
  gene symbol: ATPAF2
  hgvsc: ENST00000584205.1:c.178+21C>G
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000397198
  ensembl transcript: ENST00000444058
  gene symbol: ATPAF2
  hgvsc: ENST00000444058.1:c.178+21C>G
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000497871
  gene symbol: ATPAF2
  hgvsc: ENST00000497871.1:n.366+21C>G
  variant of: http://identifiers.org/hgnc/18802
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 2098
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3265
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4382
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4077
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5707
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5026
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2533
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2858
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5309
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6417
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6550
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 738
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15600
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: African
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ

17-17931908-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17931908
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17931908
    reference: chr 17
allele count: 1
allele frequency: 9.174985320023488e-6
allele num: 108992
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000497871
  gene symbol: ATPAF2
  hgvsc: ENST00000497871.1:n.366+21C>A
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000577586
  gene symbol: ATPAF2
  hgvsc: ENST00000577586.1:n.329+21C>A
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000397198
  ensembl transcript: ENST00000444058
  gene symbol: ATPAF2
  hgvsc: ENST00000444058.1:c.178+21C>A
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463920
  ensembl transcript: ENST00000462733
  gene symbol: ATPAF2
  hgvsc: ENST00000462733.1:c.178+21C>A
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463861
  ensembl transcript: ENST00000585101
  gene symbol: ATPAF2
  hgvsc: ENST00000585101.1:c.178+21C>A
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000417190
  ensembl transcript: ENST00000474627
  gene symbol: ATPAF2
  hgvsc: ENST00000474627.3:c.178+21C>A
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000462899
  ensembl transcript: ENST00000584205
  gene symbol: ATPAF2
  hgvsc: ENST00000584205.1:c.178+21C>A
  variant of: http://identifiers.org/hgnc/18802
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 4077
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6417
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2858
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5026
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5707
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6550
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2533
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3265
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5309
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4382
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2098
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3146
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3665
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2056
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3121
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: ClippingRankSum

17-17931927-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17931927
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17931927
    reference: chr 17
allele count: 1
allele frequency: 8.259957378619926e-6
allele num: 121066
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000577586
  gene symbol: ATPAF2
  hgvsc: ENST00000577586.1:n.329+2T>C
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463920
  ensembl transcript: ENST00000462733
  gene symbol: ATPAF2
  hgvsc: ENST00000462733.1:c.178+2T>C
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463861
  ensembl transcript: ENST00000585101
  gene symbol: ATPAF2
  hgvsc: ENST00000585101.1:c.178+2T>C
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000397198
  ensembl transcript: ENST00000444058
  gene symbol: ATPAF2
  hgvsc: ENST00000444058.1:c.178+2T>C
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000417190
  ensembl transcript: ENST00000474627
  gene symbol: ATPAF2
  hgvsc: ENST00000474627.3:c.178+2T>C
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000497871
  gene symbol: ATPAF2
  hgvsc: ENST00000497871.1:n.366+2T>C
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000462899
  ensembl transcript: ENST00000584205
  gene symbol: ATPAF2
  hgvsc: ENST00000584205.1:c.178+2T>C
  variant of: http://identifiers.org/hgnc/18802
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6967
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6730
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3922
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3322
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5802
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3476
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4490
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2488
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5975
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1395
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4832
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5250
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1961
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2687
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3154
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7059
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 2.25e1
  variant carriers: 0
hgvs: c.178+2T>C
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: African
reference allele: A
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

17-17931939-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17931939
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17931939
    reference: chr 17
allele count: 7
allele frequency: 5.775577557755776e-5
allele num: 121200
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000577586
  gene symbol: ATPAF2
  hgvsc: ENST00000577586.1:n.319A>G
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463861
  ensembl transcript: ENST00000585101
  gene symbol: ATPAF2
  hgvsc: ENST00000585101.1:c.168A>G
  hgvsp: ENST00000585101.1:c.168A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000417190
  ensembl transcript: ENST00000474627
  gene symbol: ATPAF2
  hgvsc: ENST00000474627.3:c.168A>G
  hgvsp: ENST00000474627.3:c.168A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000497871
  gene symbol: ATPAF2
  hgvsc: ENST00000497871.1:n.356A>G
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000462899
  ensembl transcript: ENST00000584205
  gene symbol: ATPAF2
  hgvsc: ENST00000584205.1:c.168A>G
  hgvsp: ENST00000584205.1:c.168A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463920
  ensembl transcript: ENST00000462733
  gene symbol: ATPAF2
  hgvsc: ENST00000462733.1:c.168A>G
  hgvsp: ENST00000462733.1:c.168A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000397198
  ensembl transcript: ENST00000444058
  gene symbol: ATPAF2
  hgvsc: ENST00000444058.1:c.168A>G
  hgvsp: ENST00000444058.1:c.168A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18802
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6965
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5809
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3442
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 5978
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5269
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6734
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2507
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3330
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3960
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4836
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1969
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4550
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2160
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3161
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3319
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17101
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7068
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Thr56Thr
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
reference allele: T
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

17-17931946-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17931946
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17931946
    reference: chr 17
allele count: 1
allele frequency: 8.249191579225235e-6
allele num: 121224
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000497871
  gene symbol: ATPAF2
  hgvsc: ENST00000497871.1:n.349G>C
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463861
  ensembl transcript: ENST00000585101
  gene symbol: ATPAF2
  hgvsc: ENST00000585101.1:c.161G>C
  hgvsp: ENSP00000463861.1:p.Ser54Thr
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000417190
  ensembl transcript: ENST00000474627
  gene symbol: ATPAF2
  hgvsc: ENST00000474627.3:c.161G>C
  hgvsp: ENSP00000417190.2:p.Ser54Thr
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463920
  ensembl transcript: ENST00000462733
  gene symbol: ATPAF2
  hgvsc: ENST00000462733.1:c.161G>C
  hgvsp: ENSP00000463920.1:p.Ser54Thr
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000577586
  gene symbol: ATPAF2
  hgvsc: ENST00000577586.1:n.312G>C
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000397198
  ensembl transcript: ENST00000444058
  gene symbol: ATPAF2
  hgvsc: ENST00000444058.1:c.161G>C
  hgvsp: ENSP00000397198.1:p.Ser54Thr
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000462899
  ensembl transcript: ENST00000584205
  gene symbol: ATPAF2
  hgvsc: ENST00000584205.1:c.161G>C
  hgvsp: ENSP00000462899.1:p.Ser54Thr
  variant of: http://identifiers.org/hgnc/18802
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6967
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2507
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6738
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5813
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4838
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4548
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5984
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3944
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3436
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3330
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5284
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1969
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2160
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3802
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2688
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ser54Thr
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum

17-17931948-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17931948
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17931948
    reference: chr 17
allele count: 1
allele frequency: 8.248375070111188e-6
allele num: 121236
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000397198
  ensembl transcript: ENST00000444058
  gene symbol: ATPAF2
  hgvsc: ENST00000444058.1:c.159C>G
  hgvsp: ENST00000444058.1:c.159C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463920
  ensembl transcript: ENST00000462733
  gene symbol: ATPAF2
  hgvsc: ENST00000462733.1:c.159C>G
  hgvsp: ENST00000462733.1:c.159C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000462899
  ensembl transcript: ENST00000584205
  gene symbol: ATPAF2
  hgvsc: ENST00000584205.1:c.159C>G
  hgvsp: ENST00000584205.1:c.159C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000417190
  ensembl transcript: ENST00000474627
  gene symbol: ATPAF2
  hgvsc: ENST00000474627.3:c.159C>G
  hgvsp: ENST00000474627.3:c.159C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463861
  ensembl transcript: ENST00000585101
  gene symbol: ATPAF2
  hgvsc: ENST00000585101.1:c.159C>G
  hgvsp: ENST00000585101.1:c.159C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000577586
  gene symbol: ATPAF2
  hgvsc: ENST00000577586.1:n.310C>G
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000497871
  gene symbol: ATPAF2
  hgvsc: ENST00000497871.1:n.347C>G
  variant of: http://identifiers.org/hgnc/18802
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3436
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5812
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3951
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1969
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4838
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5287
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6735
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4563
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6966
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5978
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3330
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2507
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17115
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3318
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3803
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Val53Val
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/17-17931951-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17931951
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17931951
    reference: chr 17
allele count: 2
allele frequency: 1.649593375233005e-5
allele num: 121242
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000462899
  ensembl transcript: ENST00000584205
  gene symbol: ATPAF2
  hgvsc: ENST00000584205.1:c.156T>G
  hgvsp: ENSP00000462899.1:p.Asn52Lys
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000417190
  ensembl transcript: ENST00000474627
  gene symbol: ATPAF2
  hgvsc: ENST00000474627.3:c.156T>G
  hgvsp: ENSP00000417190.2:p.Asn52Lys
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000497871
  gene symbol: ATPAF2
  hgvsc: ENST00000497871.1:n.344T>G
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000577586
  gene symbol: ATPAF2
  hgvsc: ENST00000577586.1:n.307T>G
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463920
  ensembl transcript: ENST00000462733
  gene symbol: ATPAF2
  hgvsc: ENST00000462733.1:c.156T>G
  hgvsp: ENSP00000463920.1:p.Asn52Lys
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463861
  ensembl transcript: ENST00000585101
  gene symbol: ATPAF2
  hgvsc: ENST00000585101.1:c.156T>G
  hgvsp: ENSP00000463861.1:p.Asn52Lys
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000397198
  ensembl transcript: ENST00000444058
  gene symbol: ATPAF2
  hgvsc: ENST00000444058.1:c.156T>G
  hgvsp: ENSP00000397198.1:p.Asn52Lys
  variant of: http://identifiers.org/hgnc/18802
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1190
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3437
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6966
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5278
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4580
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1969
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5980
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3946
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6734
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3331
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4838
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2507
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5812
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3804
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17123
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21165
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2160
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Asn52Lys
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Other
population: Latino
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff

17-17931951-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17931951
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17931951
    reference: chr 17
allele count: 1
allele frequency: 8.247966876165026e-6
allele num: 121242
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000397198
  ensembl transcript: ENST00000444058
  gene symbol: ATPAF2
  hgvsc: ENST00000444058.1:c.156T>C
  hgvsp: ENST00000444058.1:c.156T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463920
  ensembl transcript: ENST00000462733
  gene symbol: ATPAF2
  hgvsc: ENST00000462733.1:c.156T>C
  hgvsp: ENST00000462733.1:c.156T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000497871
  gene symbol: ATPAF2
  hgvsc: ENST00000497871.1:n.344T>C
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000417190
  ensembl transcript: ENST00000474627
  gene symbol: ATPAF2
  hgvsc: ENST00000474627.3:c.156T>C
  hgvsp: ENST00000474627.3:c.156T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000462899
  ensembl transcript: ENST00000584205
  gene symbol: ATPAF2
  hgvsc: ENST00000584205.1:c.156T>C
  hgvsp: ENST00000584205.1:c.156T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000577586
  gene symbol: ATPAF2
  hgvsc: ENST00000577586.1:n.307T>C
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463861
  ensembl transcript: ENST00000585101
  gene symbol: ATPAF2
  hgvsc: ENST00000585101.1:c.156T>C
  hgvsp: ENST00000585101.1:c.156T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18802
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5812
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3946
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5980
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6734
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6966
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1969
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4838
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2507
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3437
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1190
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3331
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4580
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5278
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3318
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3804
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21165
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3152
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7073
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Asn52Asn
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS

http://identifiers.org/exac.variant/17-17931966-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17931966
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17931966
    reference: chr 17
allele count: 6
allele frequency: 4.948698492296526e-5
allele num: 121244
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000497871
  gene symbol: ATPAF2
  hgvsc: ENST00000497871.1:n.329G>T
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000462899
  ensembl transcript: ENST00000584205
  gene symbol: ATPAF2
  hgvsc: ENST00000584205.1:c.141G>T
  hgvsp: ENSP00000462899.1:p.Lys47Asn
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000397198
  ensembl transcript: ENST00000444058
  gene symbol: ATPAF2
  hgvsc: ENST00000444058.1:c.141G>T
  hgvsp: ENSP00000397198.1:p.Lys47Asn
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463920
  ensembl transcript: ENST00000462733
  gene symbol: ATPAF2
  hgvsc: ENST00000462733.1:c.141G>T
  hgvsp: ENSP00000463920.1:p.Lys47Asn
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463861
  ensembl transcript: ENST00000585101
  gene symbol: ATPAF2
  hgvsc: ENST00000585101.1:c.141G>T
  hgvsp: ENSP00000463861.1:p.Lys47Asn
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000417190
  ensembl transcript: ENST00000474627
  gene symbol: ATPAF2
  hgvsc: ENST00000474627.3:c.141G>T
  hgvsp: ENSP00000417190.2:p.Lys47Asn
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000577586
  gene symbol: ATPAF2
  hgvsc: ENST00000577586.1:n.292G>T
  variant of: http://identifiers.org/hgnc/18802
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5286
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3330
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1969
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4839
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3440
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5984
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2507
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5812
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3800
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4625
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6737
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6966
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16986
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2159
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3147
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2688
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Lys47Asn
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

17-17931969-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17931969
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17931969
    reference: chr 17
allele count: 2
allele frequency: 1.649647800194658e-5
allele num: 121238
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000417190
  ensembl transcript: ENST00000474627
  gene symbol: ATPAF2
  hgvsc: ENST00000474627.3:c.138G>A
  hgvsp: ENST00000474627.3:c.138G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463861
  ensembl transcript: ENST00000585101
  gene symbol: ATPAF2
  hgvsc: ENST00000585101.1:c.138G>A
  hgvsp: ENST00000585101.1:c.138G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000497871
  gene symbol: ATPAF2
  hgvsc: ENST00000497871.1:n.326G>A
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000397198
  ensembl transcript: ENST00000444058
  gene symbol: ATPAF2
  hgvsc: ENST00000444058.1:c.138G>A
  hgvsp: ENST00000444058.1:c.138G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000462899
  ensembl transcript: ENST00000584205
  gene symbol: ATPAF2
  hgvsc: ENST00000584205.1:c.138G>A
  hgvsp: ENST00000584205.1:c.138G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463920
  ensembl transcript: ENST00000462733
  gene symbol: ATPAF2
  hgvsc: ENST00000462733.1:c.138G>A
  hgvsp: ENST00000462733.1:c.138G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000577586
  gene symbol: ATPAF2
  hgvsc: ENST00000577586.1:n.289G>A
  variant of: http://identifiers.org/hgnc/18802
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4838
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5981
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6735
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5287
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4647
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3738
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6966
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3330
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2507
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5811
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3439
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1970
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16884
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21166
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3150
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg46Arg
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Other
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

17-17931977-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17931977
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17931977
    reference: chr 17
allele count: 1
allele frequency: 8.248919391559706e-6
allele num: 121228
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000497871
  gene symbol: ATPAF2
  hgvsc: ENST00000497871.1:n.322-4A>T
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463920
  ensembl transcript: ENST00000462733
  gene symbol: ATPAF2
  hgvsc: ENST00000462733.1:c.134-4A>T
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000417190
  ensembl transcript: ENST00000474627
  gene symbol: ATPAF2
  hgvsc: ENST00000474627.3:c.134-4A>T
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463861
  ensembl transcript: ENST00000585101
  gene symbol: ATPAF2
  hgvsc: ENST00000585101.1:c.134-4A>T
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000462899
  ensembl transcript: ENST00000584205
  gene symbol: ATPAF2
  hgvsc: ENST00000584205.1:c.134-4A>T
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000577586
  gene symbol: ATPAF2
  hgvsc: ENST00000577586.1:n.285-4A>T
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000397198
  ensembl transcript: ENST00000444058
  gene symbol: ATPAF2
  hgvsc: ENST00000444058.1:c.134-4A>T
  variant of: http://identifiers.org/hgnc/18802
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5978
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4649
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5272
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1971
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6734
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3690
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5812
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4838
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3437
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2507
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3330
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6966
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7035
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3317
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: c.134-4A>T
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

17-17931979-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17931979
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17931979
    reference: chr 17
allele count: 1
allele frequency: 8.248783304462591e-6
allele num: 121230
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000417190
  ensembl transcript: ENST00000474627
  gene symbol: ATPAF2
  hgvsc: ENST00000474627.3:c.134-6T>C
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463920
  ensembl transcript: ENST00000462733
  gene symbol: ATPAF2
  hgvsc: ENST00000462733.1:c.134-6T>C
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000577586
  gene symbol: ATPAF2
  hgvsc: ENST00000577586.1:n.285-6T>C
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000497871
  gene symbol: ATPAF2
  hgvsc: ENST00000497871.1:n.322-6T>C
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000462899
  ensembl transcript: ENST00000584205
  gene symbol: ATPAF2
  hgvsc: ENST00000584205.1:c.134-6T>C
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000397198
  ensembl transcript: ENST00000444058
  gene symbol: ATPAF2
  hgvsc: ENST00000444058.1:c.134-6T>C
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463861
  ensembl transcript: ENST00000585101
  gene symbol: ATPAF2
  hgvsc: ENST00000585101.1:c.134-6T>C
  variant of: http://identifiers.org/hgnc/18802
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6966
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4838
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6734
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5274
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2507
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4649
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3690
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5977
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5813
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3438
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3330
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1970
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21168
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3150
  bin: 7.25e1
  variant carriers: 0
hgvs: c.134-6T>C
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

17-17931988-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17931988
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17931988
    reference: chr 17
allele count: 1
allele frequency: 8.249463784853985e-6
allele num: 121220
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000462899
  ensembl transcript: ENST00000584205
  gene symbol: ATPAF2
  hgvsc: ENST00000584205.1:c.134-15A>T
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000417190
  ensembl transcript: ENST00000474627
  gene symbol: ATPAF2
  hgvsc: ENST00000474627.3:c.134-15A>T
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000397198
  ensembl transcript: ENST00000444058
  gene symbol: ATPAF2
  hgvsc: ENST00000444058.1:c.134-15A>T
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463920
  ensembl transcript: ENST00000462733
  gene symbol: ATPAF2
  hgvsc: ENST00000462733.1:c.134-15A>T
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463861
  ensembl transcript: ENST00000585101
  gene symbol: ATPAF2
  hgvsc: ENST00000585101.1:c.134-15A>T
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000577586
  gene symbol: ATPAF2
  hgvsc: ENST00000577586.1:n.285-15A>T
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000497871
  gene symbol: ATPAF2
  hgvsc: ENST00000497871.1:n.322-15A>T
  variant of: http://identifiers.org/hgnc/18802
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4671
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6966
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5272
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3542
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3330
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3437
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4837
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5976
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6734
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5813
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1971
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2507
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16764
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21168
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2159
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3795
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: DP

17-17931995-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17931995
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17931995
    reference: chr 17
allele count: 3
allele frequency: 2.475329218786098e-5
allele num: 121196
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463920
  ensembl transcript: ENST00000462733
  gene symbol: ATPAF2
  hgvsc: ENST00000462733.1:c.134-22C>T
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000497871
  gene symbol: ATPAF2
  hgvsc: ENST00000497871.1:n.322-22C>T
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463861
  ensembl transcript: ENST00000585101
  gene symbol: ATPAF2
  hgvsc: ENST00000585101.1:c.134-22C>T
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000462899
  ensembl transcript: ENST00000584205
  gene symbol: ATPAF2
  hgvsc: ENST00000584205.1:c.134-22C>T
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000577586
  gene symbol: ATPAF2
  hgvsc: ENST00000577586.1:n.285-22C>T
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000417190
  ensembl transcript: ENST00000474627
  gene symbol: ATPAF2
  hgvsc: ENST00000474627.3:c.134-22C>T
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000397198
  ensembl transcript: ENST00000444058
  gene symbol: ATPAF2
  hgvsc: ENST00000444058.1:c.134-22C>T
  variant of: http://identifiers.org/hgnc/18802
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2507
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4837
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3439
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1971
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6966
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3330
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4609
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5271
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5813
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1190
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6733
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5978
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3401
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3147
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3792
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16530
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff

17-17932000-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17932000
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17932000
    reference: chr 17
allele count: 1
allele frequency: 8.251778258214646e-6
allele num: 121186
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000397198
  ensembl transcript: ENST00000444058
  gene symbol: ATPAF2
  hgvsc: ENST00000444058.1:c.134-27T>A
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000462899
  ensembl transcript: ENST00000584205
  gene symbol: ATPAF2
  hgvsc: ENST00000584205.1:c.134-27T>A
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000417190
  ensembl transcript: ENST00000474627
  gene symbol: ATPAF2
  hgvsc: ENST00000474627.3:c.134-27T>A
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463861
  ensembl transcript: ENST00000585101
  gene symbol: ATPAF2
  hgvsc: ENST00000585101.1:c.134-27T>A
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463920
  ensembl transcript: ENST00000462733
  gene symbol: ATPAF2
  hgvsc: ENST00000462733.1:c.134-27T>A
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000577586
  gene symbol: ATPAF2
  hgvsc: ENST00000577586.1:n.285-27T>A
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000497871
  gene symbol: ATPAF2
  hgvsc: ENST00000497871.1:n.322-27T>A
  variant of: http://identifiers.org/hgnc/18802
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5814
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4567
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3332
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6966
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1971
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5267
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3284
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4837
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5976
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6733
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3437
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2507
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2689
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6988
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3313
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16283
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ

http://identifiers.org/exac.variant/17-17932005-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17932005
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17932005
    reference: chr 17
allele count: 7
allele frequency: 5.776626120252851e-5
allele num: 121178
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463861
  ensembl transcript: ENST00000585101
  gene symbol: ATPAF2
  hgvsc: ENST00000585101.1:c.134-32T>G
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000497871
  gene symbol: ATPAF2
  hgvsc: ENST00000497871.1:n.322-32T>G
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000462899
  ensembl transcript: ENST00000584205
  gene symbol: ATPAF2
  hgvsc: ENST00000584205.1:c.134-32T>G
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000577586
  gene symbol: ATPAF2
  hgvsc: ENST00000577586.1:n.285-32T>G
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463920
  ensembl transcript: ENST00000462733
  gene symbol: ATPAF2
  hgvsc: ENST00000462733.1:c.134-32T>G
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000397198
  ensembl transcript: ENST00000444058
  gene symbol: ATPAF2
  hgvsc: ENST00000444058.1:c.134-32T>G
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000417190
  ensembl transcript: ENST00000474627
  gene symbol: ATPAF2
  hgvsc: ENST00000474627.3:c.134-32T>G
  variant of: http://identifiers.org/hgnc/18802
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3159
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1971
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5245
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5812
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3437
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6733
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4501
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2507
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4839
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5975
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6967
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3334
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2689
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16064
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: African
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ClippingRankSum

17-17932008-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17932008
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17932008
    reference: chr 17
allele count: 16285
allele frequency: 1.344157023292669e-1
allele num: 121154
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000497871
  gene symbol: ATPAF2
  hgvsc: ENST00000497871.1:n.322-35T>C
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000397198
  ensembl transcript: ENST00000444058
  gene symbol: ATPAF2
  hgvsc: ENST00000444058.1:c.134-35T>C
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000462899
  ensembl transcript: ENST00000584205
  gene symbol: ATPAF2
  hgvsc: ENST00000584205.1:c.134-35T>C
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463920
  ensembl transcript: ENST00000462733
  gene symbol: ATPAF2
  hgvsc: ENST00000462733.1:c.134-35T>C
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000417190
  ensembl transcript: ENST00000474627
  gene symbol: ATPAF2
  hgvsc: ENST00000474627.3:c.134-35T>C
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463861
  ensembl transcript: ENST00000585101
  gene symbol: ATPAF2
  hgvsc: ENST00000585101.1:c.134-35T>C
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000577586
  gene symbol: ATPAF2
  hgvsc: ENST00000577586.1:n.285-35T>C
  variant of: http://identifiers.org/hgnc/18802
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4516
  bin: 3.25e1
  variant carriers: 393
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 1.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6482
  bin: 4.75e1
  variant carriers: 994
genotype depth: GenotypeDepth
  all individuals: 4916
  bin: 5.75e1
  variant carriers: 1194
genotype depth: GenotypeDepth
  all individuals: 2657
  bin: 2.25e1
  variant carriers: 208
genotype depth: GenotypeDepth
  all individuals: 1618
  bin: 8.25e1
  variant carriers: 701
genotype depth: GenotypeDepth
  all individuals: 6098
  bin: 4.25e1
  variant carriers: 758
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 1.75e1
  variant carriers: 72
genotype depth: GenotypeDepth
  all individuals: 5248
  bin: 3.75e1
  variant carriers: 541
genotype depth: GenotypeDepth
  all individuals: 3005
  bin: 6.75e1
  variant carriers: 1185
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3765
  bin: 6.25e1
  variant carriers: 1247
genotype depth: GenotypeDepth
  all individuals: 3904
  bin: 2.75e1
  variant carriers: 290
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 9.25e1
  variant carriers: 493
genotype depth: GenotypeDepth
  all individuals: 5694
  bin: 5.25e1
  variant carriers: 1127
genotype depth: GenotypeDepth
  all individuals: 4711
  bin: 9.75e1
  variant carriers: 2850
genotype depth: GenotypeDepth
  all individuals: 1331
  bin: 8.75e1
  variant carriers: 569
genotype depth: GenotypeDepth
  all individuals: 2401
  bin: 7.25e1
  variant carriers: 1013
genotype depth: GenotypeDepth
  all individuals: 1956
  bin: 7.75e1
  variant carriers: 841
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 4.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 3.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2630
  bin: 8.25e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 2.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 4.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 5.25e1
  variant carriers: 8
num of homozygotes: 1783
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: East Asian
reference allele: A
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

17-17932009-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17932009
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17932009
    reference: chr 17
allele count: 21
allele frequency: 1.733188075666039e-4
allele num: 121164
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000497871
  gene symbol: ATPAF2
  hgvsc: ENST00000497871.1:n.322-36A>G
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000397198
  ensembl transcript: ENST00000444058
  gene symbol: ATPAF2
  hgvsc: ENST00000444058.1:c.134-36A>G
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000577586
  gene symbol: ATPAF2
  hgvsc: ENST00000577586.1:n.285-36A>G
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463920
  ensembl transcript: ENST00000462733
  gene symbol: ATPAF2
  hgvsc: ENST00000462733.1:c.134-36A>G
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000462899
  ensembl transcript: ENST00000584205
  gene symbol: ATPAF2
  hgvsc: ENST00000584205.1:c.134-36A>G
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463861
  ensembl transcript: ENST00000585101
  gene symbol: ATPAF2
  hgvsc: ENST00000585101.1:c.134-36A>G
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000417190
  ensembl transcript: ENST00000474627
  gene symbol: ATPAF2
  hgvsc: ENST00000474627.3:c.134-36A>G
  variant of: http://identifiers.org/hgnc/18802
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2642
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3558
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6767
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7076
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6000
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1647
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2664
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2843
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4328
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5114
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4971
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6076
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1965
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3748
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6336
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3331
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 1
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff

17-17932012-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17932012
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17932012
    reference: chr 17
allele count: 2
allele frequency: 1.650764303872693e-5
allele num: 121156
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463920
  ensembl transcript: ENST00000462733
  gene symbol: ATPAF2
  hgvsc: ENST00000462733.1:c.134-39G>A
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000417190
  ensembl transcript: ENST00000474627
  gene symbol: ATPAF2
  hgvsc: ENST00000474627.3:c.134-39G>A
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000397198
  ensembl transcript: ENST00000444058
  gene symbol: ATPAF2
  hgvsc: ENST00000444058.1:c.134-39G>A
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000497871
  gene symbol: ATPAF2
  hgvsc: ENST00000497871.1:n.322-39G>A
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000462899
  ensembl transcript: ENST00000584205
  gene symbol: ATPAF2
  hgvsc: ENST00000584205.1:c.134-39G>A
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463861
  ensembl transcript: ENST00000585101
  gene symbol: ATPAF2
  hgvsc: ENST00000585101.1:c.134-39G>A
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000577586
  gene symbol: ATPAF2
  hgvsc: ENST00000577586.1:n.285-39G>A
  variant of: http://identifiers.org/hgnc/18802
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2606
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6000
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5058
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2836
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6768
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2663
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4975
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3558
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4186
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7078
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1965
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6075
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2065
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2805
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff

17-17932013-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17932013
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17932013
    reference: chr 17
allele count: 5
allele frequency: 4.127592127856294e-5
allele num: 121136
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000577586
  gene symbol: ATPAF2
  hgvsc: ENST00000577586.1:n.285-40C>T
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000462899
  ensembl transcript: ENST00000584205
  gene symbol: ATPAF2
  hgvsc: ENST00000584205.1:c.134-40C>T
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463861
  ensembl transcript: ENST00000585101
  gene symbol: ATPAF2
  hgvsc: ENST00000585101.1:c.134-40C>T
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000417190
  ensembl transcript: ENST00000474627
  gene symbol: ATPAF2
  hgvsc: ENST00000474627.3:c.134-40C>T
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463920
  ensembl transcript: ENST00000462733
  gene symbol: ATPAF2
  hgvsc: ENST00000462733.1:c.134-40C>T
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000497871
  gene symbol: ATPAF2
  hgvsc: ENST00000497871.1:n.322-40C>T
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000397198
  ensembl transcript: ENST00000444058
  gene symbol: ATPAF2
  hgvsc: ENST00000444058.1:c.134-40C>T
  variant of: http://identifiers.org/hgnc/18802
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6076
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5033
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3559
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7080
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4162
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2606
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2663
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6763
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5999
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1966
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4974
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2837
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 474
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3330
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 451
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3740
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2064
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: MQRankSum

17-17932019-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17932019
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17932019
    reference: chr 17
allele count: 4
allele frequency: 3.3028916816673e-5
allele num: 121106
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000497871
  gene symbol: ATPAF2
  hgvsc: ENST00000497871.1:n.322-46T>C
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000397198
  ensembl transcript: ENST00000444058
  gene symbol: ATPAF2
  hgvsc: ENST00000444058.1:c.134-46T>C
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000577586
  gene symbol: ATPAF2
  hgvsc: ENST00000577586.1:n.285-46T>C
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000417190
  ensembl transcript: ENST00000474627
  gene symbol: ATPAF2
  hgvsc: ENST00000474627.3:c.134-46T>C
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463920
  ensembl transcript: ENST00000462733
  gene symbol: ATPAF2
  hgvsc: ENST00000462733.1:c.134-46T>C
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463861
  ensembl transcript: ENST00000585101
  gene symbol: ATPAF2
  hgvsc: ENST00000585101.1:c.134-46T>C
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000462899
  ensembl transcript: ENST00000584205
  gene symbol: ATPAF2
  hgvsc: ENST00000584205.1:c.134-46T>C
  variant of: http://identifiers.org/hgnc/18802
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7078
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6760
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3866
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1966
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2995
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4972
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4875
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2664
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5979
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6076
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2837
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3558
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1647
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23310
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 675
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2062
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3322
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 402
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6193
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff

17-17942148-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17942148
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17942148
    reference: chr 17
allele count: 1
allele frequency: 8.328752519447637e-6
allele num: 120066
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000497871
  gene symbol: ATPAF2
  hgvsc: ENST00000497871.1:n.321+47G>A
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463920
  ensembl transcript: ENST00000462733
  gene symbol: ATPAF2
  hgvsc: ENST00000462733.1:c.133+47G>A
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463861
  ensembl transcript: ENST00000585101
  gene symbol: ATPAF2
  hgvsc: ENST00000585101.1:c.133+47G>A
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000462899
  ensembl transcript: ENST00000584205
  gene symbol: ATPAF2
  hgvsc: ENST00000584205.1:c.133+47G>A
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000417190
  ensembl transcript: ENST00000474627
  gene symbol: ATPAF2
  hgvsc: ENST00000474627.3:c.133+47G>A
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000577586
  gene symbol: ATPAF2
  hgvsc: ENST00000577586.1:n.284+47G>A
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000397198
  ensembl transcript: ENST00000444058
  gene symbol: ATPAF2
  hgvsc: ENST00000444058.1:c.133+47G>A
  variant of: http://identifiers.org/hgnc/18802
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4663
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12267
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14392
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2699
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21195
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1679
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1022
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 821
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10191
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38510
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2140
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

17-17942149-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17942149
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17942149
    reference: chr 17
allele count: 2
allele frequency: 1.665861500274867e-5
allele num: 120058
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463861
  ensembl transcript: ENST00000585101
  gene symbol: ATPAF2
  hgvsc: ENST00000585101.1:c.133+46A>C
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000497871
  gene symbol: ATPAF2
  hgvsc: ENST00000497871.1:n.321+46A>C
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000462899
  ensembl transcript: ENST00000584205
  gene symbol: ATPAF2
  hgvsc: ENST00000584205.1:c.133+46A>C
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000577586
  gene symbol: ATPAF2
  hgvsc: ENST00000577586.1:n.284+46A>C
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463920
  ensembl transcript: ENST00000462733
  gene symbol: ATPAF2
  hgvsc: ENST00000462733.1:c.133+46A>C
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000397198
  ensembl transcript: ENST00000444058
  gene symbol: ATPAF2
  hgvsc: ENST00000444058.1:c.133+46A>C
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000417190
  ensembl transcript: ENST00000474627
  gene symbol: ATPAF2
  hgvsc: ENST00000474627.3:c.133+46A>C
  variant of: http://identifiers.org/hgnc/18802
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12267
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1679
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2716
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14394
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21198
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4662
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2140
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3701
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38564
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: T
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ

17-17942154-C-CG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17942154
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17942155
    reference: chr 17
allele count: 2
allele frequency: 1.666139055965611e-5
allele num: 120038
alternate allele: CG
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000497871
  gene symbol: ATPAF2
  hgvsc: ENST00000497871.1:n.321+40_321+41insC
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000577586
  gene symbol: ATPAF2
  hgvsc: ENST00000577586.1:n.284+40_284+41insC
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463861
  ensembl transcript: ENST00000585101
  gene symbol: ATPAF2
  hgvsc: ENST00000585101.1:c.133+40_133+41insC
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000417190
  ensembl transcript: ENST00000474627
  gene symbol: ATPAF2
  hgvsc: ENST00000474627.3:c.133+40_133+41insC
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463920
  ensembl transcript: ENST00000462733
  gene symbol: ATPAF2
  hgvsc: ENST00000462733.1:c.133+40_133+41insC
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000462899
  ensembl transcript: ENST00000584205
  gene symbol: ATPAF2
  hgvsc: ENST00000584205.1:c.133+40_133+41insC
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000397198
  ensembl transcript: ENST00000444058
  gene symbol: ATPAF2
  hgvsc: ENST00000444058.1:c.133+40_133+41insC
  variant of: http://identifiers.org/hgnc/18802
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21218
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12268
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4667
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14398
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1679
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2782
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3702
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1028
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1861
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2131
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/17-17942155-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17942155
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17942155
    reference: chr 17
allele count: 2
allele frequency: 1.666139055965611e-5
allele num: 120038
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000462899
  ensembl transcript: ENST00000584205
  gene symbol: ATPAF2
  hgvsc: ENST00000584205.1:c.133+40G>T
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000577586
  gene symbol: ATPAF2
  hgvsc: ENST00000577586.1:n.284+40G>T
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000497871
  gene symbol: ATPAF2
  hgvsc: ENST00000497871.1:n.321+40G>T
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463861
  ensembl transcript: ENST00000585101
  gene symbol: ATPAF2
  hgvsc: ENST00000585101.1:c.133+40G>T
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000397198
  ensembl transcript: ENST00000444058
  gene symbol: ATPAF2
  hgvsc: ENST00000444058.1:c.133+40G>T
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463920
  ensembl transcript: ENST00000462733
  gene symbol: ATPAF2
  hgvsc: ENST00000462733.1:c.133+40G>T
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000417190
  ensembl transcript: ENST00000474627
  gene symbol: ATPAF2
  hgvsc: ENST00000474627.3:c.133+40G>T
  variant of: http://identifiers.org/hgnc/18802
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14401
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2789
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1682
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21223
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12263
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4667
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38702
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10184
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1031
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/17-17942156-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17942156
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17942156
    reference: chr 17
allele count: 1
allele frequency: 8.330695279828055e-6
allele num: 120038
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463861
  ensembl transcript: ENST00000585101
  gene symbol: ATPAF2
  hgvsc: ENST00000585101.1:c.133+39T>G
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000417190
  ensembl transcript: ENST00000474627
  gene symbol: ATPAF2
  hgvsc: ENST00000474627.3:c.133+39T>G
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000397198
  ensembl transcript: ENST00000444058
  gene symbol: ATPAF2
  hgvsc: ENST00000444058.1:c.133+39T>G
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000462899
  ensembl transcript: ENST00000584205
  gene symbol: ATPAF2
  hgvsc: ENST00000584205.1:c.133+39T>G
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463920
  ensembl transcript: ENST00000462733
  gene symbol: ATPAF2
  hgvsc: ENST00000462733.1:c.133+39T>G
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000497871
  gene symbol: ATPAF2
  hgvsc: ENST00000497871.1:n.321+39T>G
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000577586
  gene symbol: ATPAF2
  hgvsc: ENST00000577586.1:n.284+39T>G
  variant of: http://identifiers.org/hgnc/18802
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1681
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21228
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4668
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12261
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14403
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2814
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 501
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 595
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3708
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1868
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

17-17942157-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17942157
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17942157
    reference: chr 17
allele count: 1
allele frequency: 8.330278897737497e-6
allele num: 120044
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000417190
  ensembl transcript: ENST00000474627
  gene symbol: ATPAF2
  hgvsc: ENST00000474627.3:c.133+38C>T
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463861
  ensembl transcript: ENST00000585101
  gene symbol: ATPAF2
  hgvsc: ENST00000585101.1:c.133+38C>T
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463920
  ensembl transcript: ENST00000462733
  gene symbol: ATPAF2
  hgvsc: ENST00000462733.1:c.133+38C>T
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000497871
  gene symbol: ATPAF2
  hgvsc: ENST00000497871.1:n.321+38C>T
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000577586
  gene symbol: ATPAF2
  hgvsc: ENST00000577586.1:n.284+38C>T
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000397198
  ensembl transcript: ENST00000444058
  gene symbol: ATPAF2
  hgvsc: ENST00000444058.1:c.133+38C>T
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000462899
  ensembl transcript: ENST00000584205
  gene symbol: ATPAF2
  hgvsc: ENST00000584205.1:c.133+38C>T
  variant of: http://identifiers.org/hgnc/18802
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21229
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14409
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4668
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12263
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2835
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1681
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 595
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10188
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 898
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3707
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum

17-17942160-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17942160
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17942160
    reference: chr 17
allele count: 53
allele frequency: 4.415783509964674e-4
allele num: 120024
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000462899
  ensembl transcript: ENST00000584205
  gene symbol: ATPAF2
  hgvsc: ENST00000584205.1:c.133+35G>C
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000397198
  ensembl transcript: ENST00000444058
  gene symbol: ATPAF2
  hgvsc: ENST00000444058.1:c.133+35G>C
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463920
  ensembl transcript: ENST00000462733
  gene symbol: ATPAF2
  hgvsc: ENST00000462733.1:c.133+35G>C
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000417190
  ensembl transcript: ENST00000474627
  gene symbol: ATPAF2
  hgvsc: ENST00000474627.3:c.133+35G>C
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000497871
  gene symbol: ATPAF2
  hgvsc: ENST00000497871.1:n.321+35G>C
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463861
  ensembl transcript: ENST00000585101
  gene symbol: ATPAF2
  hgvsc: ENST00000585101.1:c.133+35G>C
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000577586
  gene symbol: ATPAF2
  hgvsc: ENST00000577586.1:n.284+35G>C
  variant of: http://identifiers.org/hgnc/18802
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2873
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12262
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 21230
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4673
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14424
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1680
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3711
  bin: 9.75e1
  variant carriers: 53
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38819
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 900
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: C
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD

17-17942161-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17942161
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17942161
    reference: chr 17
allele count: 1
allele frequency: 8.332777814812346e-6
allele num: 120008
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463861
  ensembl transcript: ENST00000585101
  gene symbol: ATPAF2
  hgvsc: ENST00000585101.1:c.133+34C>G
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463920
  ensembl transcript: ENST00000462733
  gene symbol: ATPAF2
  hgvsc: ENST00000462733.1:c.133+34C>G
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000462899
  ensembl transcript: ENST00000584205
  gene symbol: ATPAF2
  hgvsc: ENST00000584205.1:c.133+34C>G
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000397198
  ensembl transcript: ENST00000444058
  gene symbol: ATPAF2
  hgvsc: ENST00000444058.1:c.133+34C>G
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000417190
  ensembl transcript: ENST00000474627
  gene symbol: ATPAF2
  hgvsc: ENST00000474627.3:c.133+34C>G
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000577586
  gene symbol: ATPAF2
  hgvsc: ENST00000577586.1:n.284+34C>G
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000497871
  gene symbol: ATPAF2
  hgvsc: ENST00000497871.1:n.321+34C>G
  variant of: http://identifiers.org/hgnc/18802
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1683
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12274
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2892
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4676
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21255
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14447
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3662
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2132
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 595
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

17-17942168-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17942168
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17942168
    reference: chr 17
allele count: 5
allele frequency: 4.165902917798404e-5
allele num: 120022
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000397198
  ensembl transcript: ENST00000444058
  gene symbol: ATPAF2
  hgvsc: ENST00000444058.1:c.133+27T>C
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000417190
  ensembl transcript: ENST00000474627
  gene symbol: ATPAF2
  hgvsc: ENST00000474627.3:c.133+27T>C
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000497871
  gene symbol: ATPAF2
  hgvsc: ENST00000497871.1:n.321+27T>C
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000577586
  gene symbol: ATPAF2
  hgvsc: ENST00000577586.1:n.284+27T>C
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463920
  ensembl transcript: ENST00000462733
  gene symbol: ATPAF2
  hgvsc: ENST00000462733.1:c.133+27T>C
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463861
  ensembl transcript: ENST00000585101
  gene symbol: ATPAF2
  hgvsc: ENST00000585101.1:c.133+27T>C
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000462899
  ensembl transcript: ENST00000584205
  gene symbol: ATPAF2
  hgvsc: ENST00000584205.1:c.133+27T>C
  variant of: http://identifiers.org/hgnc/18802
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12273
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4678
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3027
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14458
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1680
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21258
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39092
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1868
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2136
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQ

17-17942171-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17942171
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17942171
    reference: chr 17
allele count: 1
allele frequency: 8.331250520703158e-6
allele num: 120030
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000397198
  ensembl transcript: ENST00000444058
  gene symbol: ATPAF2
  hgvsc: ENST00000444058.1:c.133+24G>A
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000417190
  ensembl transcript: ENST00000474627
  gene symbol: ATPAF2
  hgvsc: ENST00000474627.3:c.133+24G>A
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463920
  ensembl transcript: ENST00000462733
  gene symbol: ATPAF2
  hgvsc: ENST00000462733.1:c.133+24G>A
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000462899
  ensembl transcript: ENST00000584205
  gene symbol: ATPAF2
  hgvsc: ENST00000584205.1:c.133+24G>A
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000497871
  gene symbol: ATPAF2
  hgvsc: ENST00000497871.1:n.321+24G>A
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000577586
  gene symbol: ATPAF2
  hgvsc: ENST00000577586.1:n.284+24G>A
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463861
  ensembl transcript: ENST00000585101
  gene symbol: ATPAF2
  hgvsc: ENST00000585101.1:c.133+24G>A
  variant of: http://identifiers.org/hgnc/18802
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4678
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14464
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12273
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21260
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3065
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1680
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2135
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1035
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39150
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1866
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

17-17942180-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17942180
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17942180
    reference: chr 17
allele count: 1
allele frequency: 8.335000333400014e-6
allele num: 119976
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000462899
  ensembl transcript: ENST00000584205
  gene symbol: ATPAF2
  hgvsc: ENST00000584205.1:c.133+15T>C
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000417190
  ensembl transcript: ENST00000474627
  gene symbol: ATPAF2
  hgvsc: ENST00000474627.3:c.133+15T>C
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463861
  ensembl transcript: ENST00000585101
  gene symbol: ATPAF2
  hgvsc: ENST00000585101.1:c.133+15T>C
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463920
  ensembl transcript: ENST00000462733
  gene symbol: ATPAF2
  hgvsc: ENST00000462733.1:c.133+15T>C
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000397198
  ensembl transcript: ENST00000444058
  gene symbol: ATPAF2
  hgvsc: ENST00000444058.1:c.133+15T>C
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000497871
  gene symbol: ATPAF2
  hgvsc: ENST00000497871.1:n.321+15T>C
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000577586
  gene symbol: ATPAF2
  hgvsc: ENST00000577586.1:n.284+15T>C
  variant of: http://identifiers.org/hgnc/18802
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4678
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1679
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3067
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12272
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21257
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14486
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 503
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 598
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1039
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10196
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD

17-17942183-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17942183
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17942183
    reference: chr 17
allele count: 1
allele frequency: 8.337224037884346e-6
allele num: 119944
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000497871
  gene symbol: ATPAF2
  hgvsc: ENST00000497871.1:n.321+12A>G
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463861
  ensembl transcript: ENST00000585101
  gene symbol: ATPAF2
  hgvsc: ENST00000585101.1:c.133+12A>G
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000577586
  gene symbol: ATPAF2
  hgvsc: ENST00000577586.1:n.284+12A>G
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000397198
  ensembl transcript: ENST00000444058
  gene symbol: ATPAF2
  hgvsc: ENST00000444058.1:c.133+12A>G
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463920
  ensembl transcript: ENST00000462733
  gene symbol: ATPAF2
  hgvsc: ENST00000462733.1:c.133+12A>G
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000462899
  ensembl transcript: ENST00000584205
  gene symbol: ATPAF2
  hgvsc: ENST00000584205.1:c.133+12A>G
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000417190
  ensembl transcript: ENST00000474627
  gene symbol: ATPAF2
  hgvsc: ENST00000474627.3:c.133+12A>G
  variant of: http://identifiers.org/hgnc/18802
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4678
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1679
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3046
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14488
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12272
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21252
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1052
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1029
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 503
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39127
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

http://identifiers.org/exac.variant/17-17942185-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17942185
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17942185
    reference: chr 17
allele count: 1
allele frequency: 8.3365290027844e-6
allele num: 119954
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463920
  ensembl transcript: ENST00000462733
  gene symbol: ATPAF2
  hgvsc: ENST00000462733.1:c.133+10T>G
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000462899
  ensembl transcript: ENST00000584205
  gene symbol: ATPAF2
  hgvsc: ENST00000584205.1:c.133+10T>G
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000497871
  gene symbol: ATPAF2
  hgvsc: ENST00000497871.1:n.321+10T>G
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000577586
  gene symbol: ATPAF2
  hgvsc: ENST00000577586.1:n.284+10T>G
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000397198
  ensembl transcript: ENST00000444058
  gene symbol: ATPAF2
  hgvsc: ENST00000444058.1:c.133+10T>G
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000417190
  ensembl transcript: ENST00000474627
  gene symbol: ATPAF2
  hgvsc: ENST00000474627.3:c.133+10T>G
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463861
  ensembl transcript: ENST00000585101
  gene symbol: ATPAF2
  hgvsc: ENST00000585101.1:c.133+10T>G
  variant of: http://identifiers.org/hgnc/18802
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12272
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1679
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4677
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14497
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21253
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3020
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39127
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 503
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: VQSLOD

17-17942193-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17942193
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17942193
    reference: chr 17
allele count: 1
allele frequency: 8.343763037129745e-6
allele num: 119850
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463861
  ensembl transcript: ENST00000585101
  gene symbol: ATPAF2
  hgvsc: ENST00000585101.1:c.133+2T>A
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000462899
  ensembl transcript: ENST00000584205
  gene symbol: ATPAF2
  hgvsc: ENST00000584205.1:c.133+2T>A
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000417190
  ensembl transcript: ENST00000474627
  gene symbol: ATPAF2
  hgvsc: ENST00000474627.3:c.133+2T>A
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463920
  ensembl transcript: ENST00000462733
  gene symbol: ATPAF2
  hgvsc: ENST00000462733.1:c.133+2T>A
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000497871
  gene symbol: ATPAF2
  hgvsc: ENST00000497871.1:n.321+2T>A
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000577586
  gene symbol: ATPAF2
  hgvsc: ENST00000577586.1:n.284+2T>A
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000397198
  ensembl transcript: ENST00000444058
  gene symbol: ATPAF2
  hgvsc: ENST00000444058.1:c.133+2T>A
  variant of: http://identifiers.org/hgnc/18802
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21237
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4677
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12264
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1679
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14464
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2921
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1026
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10167
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1156
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38960
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
hgvs: c.133+2T>A
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: A
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/17-17942194-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17942194
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17942194
    reference: chr 17
allele count: 2
allele frequency: 1.668696914579405e-5
allele num: 119854
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000397198
  ensembl transcript: ENST00000444058
  gene symbol: ATPAF2
  hgvsc: ENST00000444058.1:c.133+1G>T
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000497871
  gene symbol: ATPAF2
  hgvsc: ENST00000497871.1:n.321+1G>T
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000577586
  gene symbol: ATPAF2
  hgvsc: ENST00000577586.1:n.284+1G>T
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000462899
  ensembl transcript: ENST00000584205
  gene symbol: ATPAF2
  hgvsc: ENST00000584205.1:c.133+1G>T
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463920
  ensembl transcript: ENST00000462733
  gene symbol: ATPAF2
  hgvsc: ENST00000462733.1:c.133+1G>T
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463861
  ensembl transcript: ENST00000585101
  gene symbol: ATPAF2
  hgvsc: ENST00000585101.1:c.133+1G>T
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000417190
  ensembl transcript: ENST00000474627
  gene symbol: ATPAF2
  hgvsc: ENST00000474627.3:c.133+1G>T
  variant of: http://identifiers.org/hgnc/18802
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14453
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21235
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12264
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2932
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1678
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4676
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10167
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1026
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 3.25e1
  variant carriers: 0
hgvs: c.133+1G>T
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff

17-17942196-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17942196
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17942196
    reference: chr 17
allele count: 1
allele frequency: 8.346688034188035e-6
allele num: 119808
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000577586
  gene symbol: ATPAF2
  hgvsc: ENST00000577586.1:n.283A>T
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000497871
  gene symbol: ATPAF2
  hgvsc: ENST00000497871.1:n.320A>T
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000462899
  ensembl transcript: ENST00000584205
  gene symbol: ATPAF2
  hgvsc: ENST00000584205.1:c.132A>T
  hgvsp: ENST00000584205.1:c.132A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000417190
  ensembl transcript: ENST00000474627
  gene symbol: ATPAF2
  hgvsc: ENST00000474627.3:c.132A>T
  hgvsp: ENST00000474627.3:c.132A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463920
  ensembl transcript: ENST00000462733
  gene symbol: ATPAF2
  hgvsc: ENST00000462733.1:c.132A>T
  hgvsp: ENST00000462733.1:c.132A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000397198
  ensembl transcript: ENST00000444058
  gene symbol: ATPAF2
  hgvsc: ENST00000444058.1:c.132A>T
  hgvsp: ENST00000444058.1:c.132A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463861
  ensembl transcript: ENST00000585101
  gene symbol: ATPAF2
  hgvsc: ENST00000585101.1:c.132A>T
  hgvsp: ENST00000585101.1:c.132A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18802
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4675
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14415
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12265
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2939
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21224
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1200
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 4.75e1
  variant carriers: 0
hgvs: c.132A>T
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: QD

17-17942199-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17942199
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17942199
    reference: chr 17
allele count: 1
allele frequency: 8.350591221858508e-6
allele num: 119752
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463861
  ensembl transcript: ENST00000585101
  gene symbol: ATPAF2
  hgvsc: ENST00000585101.1:c.129G>C
  hgvsp: ENST00000585101.1:c.129G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000497871
  gene symbol: ATPAF2
  hgvsc: ENST00000497871.1:n.317G>C
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463920
  ensembl transcript: ENST00000462733
  gene symbol: ATPAF2
  hgvsc: ENST00000462733.1:c.129G>C
  hgvsp: ENST00000462733.1:c.129G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000397198
  ensembl transcript: ENST00000444058
  gene symbol: ATPAF2
  hgvsc: ENST00000444058.1:c.129G>C
  hgvsp: ENST00000444058.1:c.129G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000462899
  ensembl transcript: ENST00000584205
  gene symbol: ATPAF2
  hgvsc: ENST00000584205.1:c.129G>C
  hgvsp: ENST00000584205.1:c.129G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000417190
  ensembl transcript: ENST00000474627
  gene symbol: ATPAF2
  hgvsc: ENST00000474627.3:c.129G>C
  hgvsp: ENST00000474627.3:c.129G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000577586
  gene symbol: ATPAF2
  hgvsc: ENST00000577586.1:n.280G>C
  variant of: http://identifiers.org/hgnc/18802
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14378
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21220
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2931
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1676
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4675
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12263
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 596
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10152
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1847
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38847
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3646
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Pro43Pro
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP

17-17942201-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17942201
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17942201
    reference: chr 17
allele count: 3
allele frequency: 2.505721397190251e-5
allele num: 119726
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463861
  ensembl transcript: ENST00000585101
  gene symbol: ATPAF2
  hgvsc: ENST00000585101.1:c.127C>T
  hgvsp: ENSP00000463861.1:p.Pro43Ser
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000577586
  gene symbol: ATPAF2
  hgvsc: ENST00000577586.1:n.278C>T
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000397198
  ensembl transcript: ENST00000444058
  gene symbol: ATPAF2
  hgvsc: ENST00000444058.1:c.127C>T
  hgvsp: ENSP00000397198.1:p.Pro43Ser
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463920
  ensembl transcript: ENST00000462733
  gene symbol: ATPAF2
  hgvsc: ENST00000462733.1:c.127C>T
  hgvsp: ENSP00000463920.1:p.Pro43Ser
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000417190
  ensembl transcript: ENST00000474627
  gene symbol: ATPAF2
  hgvsc: ENST00000474627.3:c.127C>T
  hgvsp: ENSP00000417190.2:p.Pro43Ser
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000497871
  gene symbol: ATPAF2
  hgvsc: ENST00000497871.1:n.315C>T
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000462899
  ensembl transcript: ENST00000584205
  gene symbol: ATPAF2
  hgvsc: ENST00000584205.1:c.127C>T
  hgvsp: ENSP00000462899.1:p.Pro43Ser
  variant of: http://identifiers.org/hgnc/18802
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14375
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21209
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4676
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12259
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2905
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1675
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1271
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10147
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2114
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro43Ser
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD

17-17942213-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17942213
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17942213
    reference: chr 17
allele count: 1
allele frequency: 8.36946150884652e-6
allele num: 119482
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000577586
  gene symbol: ATPAF2
  hgvsc: ENST00000577586.1:n.266G>A
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463920
  ensembl transcript: ENST00000462733
  gene symbol: ATPAF2
  hgvsc: ENST00000462733.1:c.115G>A
  hgvsp: ENSP00000463920.1:p.Ala39Thr
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000462899
  ensembl transcript: ENST00000584205
  gene symbol: ATPAF2
  hgvsc: ENST00000584205.1:c.115G>A
  hgvsp: ENSP00000462899.1:p.Ala39Thr
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000397198
  ensembl transcript: ENST00000444058
  gene symbol: ATPAF2
  hgvsc: ENST00000444058.1:c.115G>A
  hgvsp: ENSP00000397198.1:p.Ala39Thr
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000497871
  gene symbol: ATPAF2
  hgvsc: ENST00000497871.1:n.303G>A
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463861
  ensembl transcript: ENST00000585101
  gene symbol: ATPAF2
  hgvsc: ENST00000585101.1:c.115G>A
  hgvsp: ENSP00000463861.1:p.Ala39Thr
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000417190
  ensembl transcript: ENST00000474627
  gene symbol: ATPAF2
  hgvsc: ENST00000474627.3:c.115G>A
  hgvsp: ENSP00000417190.2:p.Ala39Thr
  variant of: http://identifiers.org/hgnc/18802
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21097
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2820
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1675
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4664
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12229
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14231
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1641
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2085
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1827
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ala39Thr
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

17-17942216-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17942216
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17942216
    reference: chr 17
allele count: 3
allele frequency: 2.512731171267757e-5
allele num: 119392
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000462899
  ensembl transcript: ENST00000584205
  gene symbol: ATPAF2
  hgvsc: ENST00000584205.1:c.112C>T
  hgvsp: ENSP00000462899.1:p.Arg38Trp
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000497871
  gene symbol: ATPAF2
  hgvsc: ENST00000497871.1:n.300C>T
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463861
  ensembl transcript: ENST00000585101
  gene symbol: ATPAF2
  hgvsc: ENST00000585101.1:c.112C>T
  hgvsp: ENSP00000463861.1:p.Arg38Trp
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000577586
  gene symbol: ATPAF2
  hgvsc: ENST00000577586.1:n.263C>T
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000417190
  ensembl transcript: ENST00000474627
  gene symbol: ATPAF2
  hgvsc: ENST00000474627.3:c.112C>T
  hgvsp: ENSP00000417190.2:p.Arg38Trp
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463920
  ensembl transcript: ENST00000462733
  gene symbol: ATPAF2
  hgvsc: ENST00000462733.1:c.112C>T
  hgvsp: ENSP00000463920.1:p.Arg38Trp
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000397198
  ensembl transcript: ENST00000444058
  gene symbol: ATPAF2
  hgvsc: ENST00000444058.1:c.112C>T
  hgvsp: ENSP00000397198.1:p.Arg38Trp
  variant of: http://identifiers.org/hgnc/18802
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4653
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12210
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1671
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21050
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2841
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14157
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38620
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2067
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Arg38Trp
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum

17-17942217-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17942217
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17942217
    reference: chr 17
allele count: 21
allele frequency: 1.760297741789469e-4
allele num: 119298
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463920
  ensembl transcript: ENST00000462733
  gene symbol: ATPAF2
  hgvsc: ENST00000462733.1:c.111C>T
  hgvsp: ENST00000462733.1:c.111C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000463861
  ensembl transcript: ENST00000585101
  gene symbol: ATPAF2
  hgvsc: ENST00000585101.1:c.111C>T
  hgvsp: ENST00000585101.1:c.111C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000497871
  gene symbol: ATPAF2
  hgvsc: ENST00000497871.1:n.299C>T
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000397198
  ensembl transcript: ENST00000444058
  gene symbol: ATPAF2
  hgvsc: ENST00000444058.1:c.111C>T
  hgvsp: ENST00000444058.1:c.111C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000462899
  ensembl transcript: ENST00000584205
  gene symbol: ATPAF2
  hgvsc: ENST00000584205.1:c.111C>T
  hgvsp: ENST00000584205.1:c.111C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171953
  ensembl transcript: ENST00000577586
  gene symbol: ATPAF2
  hgvsc: ENST00000577586.1:n.262C>T
  variant of: http://identifiers.org/hgnc/18802
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000171953
  ensembl protein: ENSP00000417190
  ensembl transcript: ENST00000474627
  gene symbol: ATPAF2
  hgvsc: ENST00000474627.3:c.111C>T
  hgvsp: ENST00000474627.3:c.111C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18802
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20997
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14051
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12196
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4650
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2756
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
hgvs: p.Ala37Ala
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 14
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2480
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1449
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 741
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2250
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8020
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 45
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.498500299940011e-5
allele num: 66680
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.730702665282105e-4
allele num: 11556
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.982e1

MQRankSum
type: SiteQuality
SIO_000300: 4.02e-1

DP
type: SiteQuality
SIO_000300: 1.969318e6

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.334e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.84e-1

FS
type: SiteQuality
SIO_000300: 2.496e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.27e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.94e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.15606936416185e-4
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.999580058791769e-5
allele num: 66676
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.7e-2

BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -5.679999999999999e-1

FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 1.968826e6

MQRankSum
type: SiteQuality
SIO_000300: 1.54e0

QD
type: SiteQuality
SIO_000300: 1.178e1

MQ
type: SiteQuality
SIO_000300: 5.925e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 8.661008141347653e-5
allele num: 11546
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66672
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10394
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South Asian
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.371e0

QD
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FS
type: SiteQuality
SIO_000300: 3.784e0

MQRankSum
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VQSLOD
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MQ
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SIO_000300: 5.829e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.175e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.06e0

DP
type: SiteQuality
SIO_000300: 1.968088e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 59
allele frequency: 3.577926015767131e-3
allele num: 16490
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500555205426008e-5
allele num: 66642
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.622786759045419e-5
allele num: 10392
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.974e1

VQSLOD
type: SiteQuality
SIO_000300: 4.19e0

DP
type: SiteQuality
SIO_000300: 1.969443e6

FS
type: SiteQuality
SIO_000300: 1.122e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.72e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.78e0

MQRankSum
type: SiteQuality
SIO_000300: 3.25e-1

QD
type: SiteQuality
SIO_000300: 1.3e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.65e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500510173458976e-5
allele num: 66644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
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allele count: 4
allele frequency: 2.426301103967002e-4
allele num: 16486
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.966e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.91e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.31e-1

QD
type: SiteQuality
SIO_000300: 1.236e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.85e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 4.355e0

DP
type: SiteQuality
SIO_000300: 1.966846e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.5e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.2e0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
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South Asian
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allele count: 1
allele frequency: 6.069434328720563e-5
allele num: 16476
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66556
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BaseQRankSum
type: SiteQuality
SIO_000300: -3.113e0

MQRankSum
type: SiteQuality
SIO_000300: 1.46e0

QD
type: SiteQuality
SIO_000300: 1.414e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.86e-1

FS
type: SiteQuality
SIO_000300: 4.669e0

VQSLOD
type: SiteQuality
SIO_000300: 3.16e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.946e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.11e-1

DP
type: SiteQuality
SIO_000300: 1.963168e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16454
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11488
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505661286437003e-5
allele num: 66416
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
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DP
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FS
type: SiteQuality
SIO_000300: 2.136e0

BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.275e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16448
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11478
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Other
type: Population
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allele frequency: 0.0e0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.506886471173262e-5
allele num: 66362
num of homozygotes: 0

East Asian
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MQRankSum
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DP
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FS
type: SiteQuality
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VQSLOD
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 4.4e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11346
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65876
num of homozygotes: 0

South Asian
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allele frequency: 6.104260774020266e-5
allele num: 16382
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East Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
allele num: 10290
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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MQRankSum
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SIO_000300: 1.21e0

VQSLOD
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QD
type: SiteQuality
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DP
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MQ
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SIO_000300: 5.949e1

BaseQRankSum
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8406
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6548
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.52597204419215e-5
allele num: 65532
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Latino
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allele frequency: 0.0e0
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African
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FS
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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SIO_000300: -5.03e-1

InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6420
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 671
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 494
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 331
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16252
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.023641941887746e-5
allele num: 11082
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10188
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8300
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6520
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65030
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -5.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.26e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.020999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.208e1

FS
type: SiteQuality
SIO_000300: 1.5611e1

DP
type: SiteQuality
SIO_000300: 1.890859e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.67e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.6e0

MQ
type: SiteQuality
SIO_000300: 5.882e1

GenotypeQuality
all individuals: 930
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 481
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1149
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 484
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32776
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1925
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 665
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1699
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6468
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10802
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.920634920634921e-5
allele num: 10080
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8158
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16134
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64190
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.072e0

MQRankSum
type: SiteQuality
SIO_000300: -1.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.52e-1

DP
type: SiteQuality
SIO_000300: 1.84557e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.76e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.7e-2

QD
type: SiteQuality
SIO_000300: 1.099e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.41e0

GenotypeQuality
all individuals: 2364
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7912
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7980
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26750
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1711
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 652
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 429
bin: 4.75e1
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GenotypeQuality
all individuals: 1486
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 300
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 434
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.01276078590237e-4
allele num: 9874
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15926
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10336
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6336
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7918
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62738
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.12e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.08e-1

DP
type: SiteQuality
SIO_000300: 1.740108e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.481e0

FS
type: SiteQuality
SIO_000300: 4.041e0

MQRankSum
type: SiteQuality
SIO_000300: -6.72e-1

MQ
type: SiteQuality
SIO_000300: 5.989e1

QD
type: SiteQuality
SIO_000300: 1.327e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.39e0

GenotypeQuality
all individuals: 408
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3612
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4133
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2784
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1299
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 643
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 460
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1539
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18336
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1023
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61384
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.031991744066047e-4
allele num: 9690
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7738
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6242
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15796
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9968
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.93e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e0

VQSLOD
type: SiteQuality
SIO_000300: 1.13e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.1e0

FS
type: SiteQuality
SIO_000300: 2.35e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.91e-1

DP
type: SiteQuality
SIO_000300: 1.603639e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.45e-1

GenotypeQuality
all individuals: 6133
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 638
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11344
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1453
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 394
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 456
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4048
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3663
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9720
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6190
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.314405888538381e-4
allele num: 7608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60610
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.87e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.67e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.1e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.063e1

VQSLOD
type: SiteQuality
SIO_000300: 4.55e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.7e-3

MQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

DP
type: SiteQuality
SIO_000300: 1.543088e6

QD
type: SiteQuality
SIO_000300: 6.72e0

GenotypeQuality
all individuals: 79
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 463
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6427
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1320
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 454
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4282
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 637
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 985
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1181
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 340
bin: 1.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6180
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9686
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9546
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.39877143588431e-5
allele num: 15628
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60384
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.53e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -4.28e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.8e-1

FS
type: SiteQuality
SIO_000300: 5.298e0

VQSLOD
type: SiteQuality
SIO_000300: 2.85e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.133e0

QD
type: SiteQuality
SIO_000300: 1.267e1

DP
type: SiteQuality
SIO_000300: 1.528629e6

GenotypeQuality
all individuals: 3424
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1580
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 843
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 467
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 924
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 526
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 605
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4517
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3892
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2479
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7980
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11118
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6428
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.126633618747183e-4
allele num: 8876
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15828
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.172e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.42e-1

FS
type: SiteQuality
SIO_000300: 1.1271e1

MQRankSum
type: SiteQuality
SIO_000300: 1.51e-1

MQ
type: SiteQuality
SIO_000300: 6.058e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.21e0

QD
type: SiteQuality
SIO_000300: 1.79e0

DP
type: SiteQuality
SIO_000300: 3.038088e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.11e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.7e-3

GenotypeQuality
all individuals: 2341
bin: 1.75e1
variant carriers: 979

GenotypeQuality
all individuals: 2406
bin: 2.25e1
variant carriers: 1030

GenotypeQuality
all individuals: 2538
bin: 1.25e1
variant carriers: 1085

GenotypeQuality
all individuals: 1265
bin: 7.75e1
variant carriers: 490

GenotypeQuality
all individuals: 1590
bin: 6.25e1
variant carriers: 641

GenotypeQuality
all individuals: 2157
bin: 4.25e1
variant carriers: 954

GenotypeQuality
all individuals: 9686
bin: 9.75e1
variant carriers: 2729

GenotypeQuality
all individuals: 1377
bin: 7.25e1
variant carriers: 562

GenotypeQuality
all individuals: 959
bin: 9.25e1
variant carriers: 349

GenotypeQuality
all individuals: 1051
bin: 8.75e1
variant carriers: 381

European (Finnish)
type: Population
allele count: 867
allele frequency: 2.092181467181467e-1
allele num: 4144
num of homozygotes: 40

Other
type: Population
allele count: 94
allele frequency: 1.821705426356589e-1
allele num: 516
num of homozygotes: 6

Latino
type: Population
allele count: 1314
allele frequency: 1.971197119711971e-1
allele num: 6666
num of homozygotes: 141

South Asian
type: Population
allele count: 2166
allele frequency: 2.153509644064426e-1
allele num: 10058
num of homozygotes: 211

European (Non-Finnish)
type: Population
allele count: 7496
allele frequency: 2.04284079141004e-1
allele num: 36694
num of homozygotes: 310

African
type: Population
allele count: 890
allele frequency: 1.947483588621444e-1
allele num: 4570
num of homozygotes: 69

East Asian
type: Population
allele count: 910
allele frequency: 1.881720430107527e-1
allele num: 4836
num of homozygotes: 186

DP
type: SiteQuality
SIO_000300: 1.682093e6

VQSLOD
type: SiteQuality
SIO_000300: 4.1e0

MQRankSum
type: SiteQuality
SIO_000300: 5.23e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.37e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.13e-1

FS
type: SiteQuality
SIO_000300: 8.712999999999999e0

MQ
type: SiteQuality
SIO_000300: 6.035e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.25e-1

QD
type: SiteQuality
SIO_000300: 7.88e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.72e-1

GenotypeQuality
all individuals: 1051
bin: 8.75e1
variant carriers: 319

GenotypeQuality
all individuals: 1159
bin: 8.25e1
variant carriers: 331

GenotypeQuality
all individuals: 1810
bin: 5.25e1
variant carriers: 507

GenotypeQuality
all individuals: 2194
bin: 3.75e1
variant carriers: 620

GenotypeQuality
all individuals: 1674
bin: 5.75e1
variant carriers: 490

GenotypeQuality
all individuals: 2157
bin: 4.25e1
variant carriers: 600

GenotypeQuality
all individuals: 2248
bin: 2.75e1
variant carriers: 664

GenotypeQuality
all individuals: 2650
bin: 7.5e0
variant carriers: 731

GenotypeQuality
all individuals: 1465
bin: 6.75e1
variant carriers: 406

GenotypeQuality
all individuals: 1590
bin: 6.25e1
variant carriers: 444

East Asian
type: Population
allele count: 1437
allele frequency: 2.971464019851117e-1
allele num: 4836
num of homozygotes: 213

Other
type: Population
allele count: 106
allele frequency: 2.054263565891473e-1
allele num: 516
num of homozygotes: 11

African
type: Population
allele count: 912
allele frequency: 1.99562363238512e-1
allele num: 4570
num of homozygotes: 100

European (Non-Finnish)
type: Population
allele count: 4828
allele frequency: 1.315746443560255e-1
allele num: 36694
num of homozygotes: 275

South Asian
type: Population
allele count: 2235
allele frequency: 2.222111751839332e-1
allele num: 10058
num of homozygotes: 181

Latino
type: Population
allele count: 1565
allele frequency: 2.347734773477348e-1
allele num: 6666
num of homozygotes: 215

European (Finnish)
type: Population
allele count: 640
allele frequency: 1.544401544401544e-1
allele num: 4144
num of homozygotes: 29

VQSLOD
type: SiteQuality
SIO_000300: 4.1e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.37e-1

FS
type: SiteQuality
SIO_000300: 8.712999999999999e0

MQ
type: SiteQuality
SIO_000300: 6.035e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.25e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.23e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.13e-1

DP
type: SiteQuality
SIO_000300: 1.682093e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.72e-1

QD
type: SiteQuality
SIO_000300: 7.88e0

GenotypeQuality
all individuals: 2341
bin: 1.75e1
variant carriers: 262

GenotypeQuality
all individuals: 2157
bin: 4.25e1
variant carriers: 210

GenotypeQuality
all individuals: 2265
bin: 3.25e1
variant carriers: 282

GenotypeQuality
all individuals: 2194
bin: 3.75e1
variant carriers: 254

GenotypeQuality
all individuals: 9686
bin: 9.75e1
variant carriers: 1414

GenotypeQuality
all individuals: 2650
bin: 7.5e0
variant carriers: 280

GenotypeQuality
all individuals: 1465
bin: 6.75e1
variant carriers: 200

GenotypeQuality
all individuals: 1159
bin: 8.25e1
variant carriers: 123

GenotypeQuality
all individuals: 1377
bin: 7.25e1
variant carriers: 163

GenotypeQuality
all individuals: 1590
bin: 6.25e1
variant carriers: 158

European (Finnish)
type: Population
allele count: 242
allele frequency: 5.83976833976834e-2
allele num: 4144
num of homozygotes: 17

South Asian
type: Population
allele count: 702
allele frequency: 6.979518791012129e-2
allele num: 10058
num of homozygotes: 34

Latino
type: Population
allele count: 632
allele frequency: 9.480948094809481e-2
allele num: 6666
num of homozygotes: 71

Other
type: Population
allele count: 23
allele frequency: 4.457364341085272e-2
allele num: 516
num of homozygotes: 2

East Asian
type: Population
allele count: 555
allele frequency: 1.147642679900744e-1
allele num: 4836
num of homozygotes: 66

African
type: Population
allele count: 338
allele frequency: 7.396061269146609e-2
allele num: 4570
num of homozygotes: 25

European (Non-Finnish)
type: Population
allele count: 1821
allele frequency: 4.962664195781327e-2
allele num: 36694
num of homozygotes: 89

MQ
type: SiteQuality
SIO_000300: 6.035e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.37e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.72e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.25e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.1e0

FS
type: SiteQuality
SIO_000300: 8.712999999999999e0

QD
type: SiteQuality
SIO_000300: 7.88e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.13e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.23e-1

DP
type: SiteQuality
SIO_000300: 1.682093e6

GenotypeQuality
all individuals: 1265
bin: 7.75e1
variant carriers: 268

GenotypeQuality
all individuals: 2650
bin: 7.5e0
variant carriers: 599

GenotypeQuality
all individuals: 2406
bin: 2.25e1
variant carriers: 629

GenotypeQuality
all individuals: 1051
bin: 8.75e1
variant carriers: 216

GenotypeQuality
all individuals: 959
bin: 9.25e1
variant carriers: 189

GenotypeQuality
all individuals: 1465
bin: 6.75e1
variant carriers: 372

GenotypeQuality
all individuals: 2157
bin: 4.25e1
variant carriers: 600

GenotypeQuality
all individuals: 1810
bin: 5.25e1
variant carriers: 532

GenotypeQuality
all individuals: 1955
bin: 4.75e1
variant carriers: 552

GenotypeQuality
all individuals: 1674
bin: 5.75e1
variant carriers: 434

South Asian
type: Population
allele count: 439
allele frequency: 4.364684827997614e-2
allele num: 10058
num of homozygotes: 0

East Asian
type: Population
allele count: 72
allele frequency: 1.488833746898263e-2
allele num: 4836
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5523
allele frequency: 1.505150705837467e-1
allele num: 36694
num of homozygotes: 0

African
type: Population
allele count: 378
allele frequency: 8.271334792122538e-2
allele num: 4570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 562
allele frequency: 1.356177606177606e-1
allele num: 4144
num of homozygotes: 0

Latino
type: Population
allele count: 492
allele frequency: 7.38073807380738e-2
allele num: 6666
num of homozygotes: 0

Other
type: Population
allele count: 57
allele frequency: 1.104651162790698e-1
allele num: 516
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.1e0

MQRankSum
type: SiteQuality
SIO_000300: 5.23e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.13e-1

FS
type: SiteQuality
SIO_000300: 8.712999999999999e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.37e-1

MQ
type: SiteQuality
SIO_000300: 6.035e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.72e-1

QD
type: SiteQuality
SIO_000300: 7.88e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.25e-1

DP
type: SiteQuality
SIO_000300: 1.682093e6

GenotypeQuality
all individuals: 1590
bin: 6.25e1
variant carriers: 47

GenotypeQuality
all individuals: 2650
bin: 7.5e0
variant carriers: 115

GenotypeQuality
all individuals: 2341
bin: 1.75e1
variant carriers: 117

GenotypeQuality
all individuals: 2248
bin: 2.75e1
variant carriers: 93

GenotypeQuality
all individuals: 1377
bin: 7.25e1
variant carriers: 65

GenotypeQuality
all individuals: 9686
bin: 9.75e1
variant carriers: 503

GenotypeQuality
all individuals: 12704
bin: 2.5e0
variant carriers: 106

GenotypeQuality
all individuals: 2194
bin: 3.75e1
variant carriers: 91

GenotypeQuality
all individuals: 2538
bin: 1.25e1
variant carriers: 117

GenotypeQuality
all individuals: 959
bin: 9.25e1
variant carriers: 39

European (Finnish)
type: Population
allele count: 69
allele frequency: 1.665057915057915e-2
allele num: 4144
num of homozygotes: 2

European (Non-Finnish)
type: Population
allele count: 557
allele frequency: 1.517959339401537e-2
allele num: 36694
num of homozygotes: 25

South Asian
type: Population
allele count: 258
allele frequency: 2.565122290713859e-2
allele num: 10058
num of homozygotes: 11

East Asian
type: Population
allele count: 198
allele frequency: 4.094292803970223e-2
allele num: 4836
num of homozygotes: 15

Other
type: Population
allele count: 8
allele frequency: 1.550387596899225e-2
allele num: 516
num of homozygotes: 1

African
type: Population
allele count: 139
allele frequency: 3.041575492341357e-2
allele num: 4570
num of homozygotes: 12

Latino
type: Population
allele count: 203
allele frequency: 3.045304530453045e-2
allele num: 6666
num of homozygotes: 16

ClippingRankSum
type: SiteQuality
SIO_000300: 3.13e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.23e-1

FS
type: SiteQuality
SIO_000300: 8.712999999999999e0

DP
type: SiteQuality
SIO_000300: 1.682093e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.25e-1

QD
type: SiteQuality
SIO_000300: 7.88e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.72e-1

MQ
type: SiteQuality
SIO_000300: 6.035e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.37e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.1e0

GenotypeQuality
all individuals: 2157
bin: 4.25e1
variant carriers: 18

GenotypeQuality
all individuals: 1051
bin: 8.75e1
variant carriers: 20

GenotypeQuality
all individuals: 1265
bin: 7.75e1
variant carriers: 12

GenotypeQuality
all individuals: 2650
bin: 7.5e0
variant carriers: 25

GenotypeQuality
all individuals: 2248
bin: 2.75e1
variant carriers: 22

GenotypeQuality
all individuals: 2194
bin: 3.75e1
variant carriers: 12

GenotypeQuality
all individuals: 1159
bin: 8.25e1
variant carriers: 18

GenotypeQuality
all individuals: 2406
bin: 2.25e1
variant carriers: 25

GenotypeQuality
all individuals: 1377
bin: 7.25e1
variant carriers: 14

GenotypeQuality
all individuals: 1955
bin: 4.75e1
variant carriers: 18

European (Finnish)
type: Population
allele count: 8
allele frequency: 1.930501930501931e-3
allele num: 4144
num of homozygotes: 0

East Asian
type: Population
allele count: 59
allele frequency: 1.220016542597188e-2
allele num: 4836
num of homozygotes: 3

Latino
type: Population
allele count: 44
allele frequency: 6.600660066006601e-3
allele num: 6666
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 5.813953488372093e-3
allele num: 516
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 124
allele frequency: 3.379299067967515e-3
allele num: 36694
num of homozygotes: 1

South Asian
type: Population
allele count: 78
allele frequency: 7.755020878902366e-3
allele num: 10058
num of homozygotes: 1

African
type: Population
allele count: 42
allele frequency: 9.190371991247264e-3
allele num: 4570
num of homozygotes: 1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.25e-1

QD
type: SiteQuality
SIO_000300: 7.88e0

MQRankSum
type: SiteQuality
SIO_000300: 5.23e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.72e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.13e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.1e0

DP
type: SiteQuality
SIO_000300: 1.682093e6

FS
type: SiteQuality
SIO_000300: 8.712999999999999e0

MQ
type: SiteQuality
SIO_000300: 6.035e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.37e-1

GenotypeQuality
all individuals: 572
bin: 2.75e1
variant carriers: 43

GenotypeQuality
all individuals: 2809
bin: 2.25e1
variant carriers: 42

GenotypeQuality
all individuals: 329
bin: 7.5e0
variant carriers: 52

GenotypeQuality
all individuals: 2923
bin: 7.75e1
variant carriers: 37

GenotypeQuality
all individuals: 222
bin: 4.75e1
variant carriers: 42

GenotypeQuality
all individuals: 1465
bin: 9.25e1
variant carriers: 36

GenotypeQuality
all individuals: 554
bin: 3.25e1
variant carriers: 47

GenotypeQuality
all individuals: 8586
bin: 9.75e1
variant carriers: 2180

Other
type: Population
allele count: 22
allele frequency: 2.477477477477477e-2
allele num: 888
num of homozygotes: 0

African
type: Population
allele count: 224
allele frequency: 2.320762536261915e-2
allele num: 9652
num of homozygotes: 0

East Asian
type: Population
allele count: 418
allele frequency: 5.015598752099832e-2
allele num: 8334
num of homozygotes: 0

South Asian
type: Population
allele count: 772
allele frequency: 4.848028133634765e-2
allele num: 15924
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 931
allele frequency: 1.41804002802571e-2
allele num: 65654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 115
allele frequency: 1.755725190839695e-2
allele num: 6550
num of homozygotes: 0

Latino
type: Population
allele count: 296
allele frequency: 2.613917343694808e-2
allele num: 11324
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.55e-2

VQSLOD
type: SiteQuality
SIO_000300: -7.35e0

FS
type: SiteQuality
SIO_000300: 5.7618e1

MQ
type: SiteQuality
SIO_000300: 5.909e1

DP
type: SiteQuality
SIO_000300: 3.435214e6

MQRankSum
type: SiteQuality
SIO_000300: 7.05e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.04e0

QD
type: SiteQuality
SIO_000300: 9.6e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.664e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.1e-1

GenotypeQuality
all individuals: 1078
bin: 1.75e1
variant carriers: 8

GenotypeQuality
all individuals: 1645
bin: 7.75e1
variant carriers: 6

GenotypeQuality
all individuals: 1172
bin: 5.25e1
variant carriers: 9

GenotypeQuality
all individuals: 4070
bin: 6.75e1
variant carriers: 7

GenotypeQuality
all individuals: 1164
bin: 4.75e1
variant carriers: 7

GenotypeQuality
all individuals: 617
bin: 8.75e1
variant carriers: 5

GenotypeQuality
all individuals: 1269
bin: 3.25e1
variant carriers: 11

GenotypeQuality
all individuals: 11126
bin: 6.25e1
variant carriers: 10

GenotypeQuality
all individuals: 1213
bin: 5.75e1
variant carriers: 5

GenotypeQuality
all individuals: 1199
bin: 4.25e1
variant carriers: 8

Other
type: Population
allele count: 3
allele frequency: 6.437768240343348e-3
allele num: 466
num of homozygotes: 0

East Asian
type: Population
allele count: 107
allele frequency: 4.093343534812548e-2
allele num: 2614
num of homozygotes: 0

Latino
type: Population
allele count: 23
allele frequency: 4.243542435424354e-3
allele num: 5420
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 108
allele frequency: 2.402135231316726e-3
allele num: 44960
num of homozygotes: 0

South Asian
type: Population
allele count: 162
allele frequency: 2.751358695652174e-2
allele num: 5888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 9
allele frequency: 2.292409577177789e-3
allele num: 3926
num of homozygotes: 0

African
type: Population
allele count: 23
allele frequency: 4.757964418700869e-3
allele num: 4834
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.965e0

MQRankSum
type: SiteQuality
SIO_000300: -2.28e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.16e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.273e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.24e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.585e1

FS
type: SiteQuality
SIO_000300: 5.5574e1

DP
type: SiteQuality
SIO_000300: 2.826945e6

QD
type: SiteQuality
SIO_000300: 3.51e0

MQ
type: SiteQuality
SIO_000300: 5.875e1

GenotypeQuality
all individuals: 354
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 856
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 460
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16846
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 6234
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1943
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 428
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2803
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13637
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6674
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62762
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8964
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.250562640660165e-4
allele num: 13330
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5942
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10212
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.9e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.772e0

DP
type: SiteQuality
SIO_000300: 2.783923e6

MQRankSum
type: SiteQuality
SIO_000300: -1.982e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

FS
type: SiteQuality
SIO_000300: 3.1095e1

VQSLOD
type: SiteQuality
SIO_000300: -4.943e0

QD
type: SiteQuality
SIO_000300: 1.26e0

MQ
type: SiteQuality
SIO_000300: 5.841e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.72e0

GenotypeQuality
all individuals: 139
bin: 7.5e0
variant carriers: 11

GenotypeQuality
all individuals: 428
bin: 3.75e1
variant carriers: 5

GenotypeQuality
all individuals: 354
bin: 5.75e1
variant carriers: 4

GenotypeQuality
all individuals: 490
bin: 3.25e1
variant carriers: 11

GenotypeQuality
all individuals: 13637
bin: 6.25e1
variant carriers: 11

GenotypeQuality
all individuals: 460
bin: 2.75e1
variant carriers: 5

GenotypeQuality
all individuals: 2803
bin: 7.25e1
variant carriers: 9

GenotypeQuality
all individuals: 1943
bin: 8.75e1
variant carriers: 8

GenotypeQuality
all individuals: 3463
bin: 7.75e1
variant carriers: 5

GenotypeQuality
all individuals: 435
bin: 4.75e1
variant carriers: 3

East Asian
type: Population
allele count: 106
allele frequency: 1.588252921786035e-2
allele num: 6674
num of homozygotes: 0

Latino
type: Population
allele count: 20
allele frequency: 1.958480219349785e-3
allele num: 10212
num of homozygotes: 0

African
type: Population
allele count: 22
allele frequency: 2.454261490406069e-3
allele num: 8964
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 3.703703703703704e-3
allele num: 810
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 96
allele frequency: 1.529587967241324e-3
allele num: 62762
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 7
allele frequency: 1.178054527095254e-3
allele num: 5942
num of homozygotes: 0

South Asian
type: Population
allele count: 148
allele frequency: 1.110277569392348e-2
allele num: 13330
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.943e0

MQ
type: SiteQuality
SIO_000300: 5.841e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

FS
type: SiteQuality
SIO_000300: 3.1095e1

QD
type: SiteQuality
SIO_000300: 1.26e0

MQRankSum
type: SiteQuality
SIO_000300: -1.982e0

DP
type: SiteQuality
SIO_000300: 2.783923e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.9e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.72e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.772e0

GenotypeQuality
all individuals: 600
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 586
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 13950
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3164
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 668
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 618
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1285
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2169
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 649
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14509
bin: 9.75e1
variant carriers: 13

Latino
type: Population
allele count: 2
allele frequency: 2.049600327936052e-4
allele num: 9758
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.332222592469177e-4
allele num: 6002
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.665556295802798e-4
allele num: 6004
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 3.219056816352809e-4
allele num: 12426
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.17426021606388e-4
allele num: 8516
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.137878344549563e-4
allele num: 61518
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 764
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.297e1

FS
type: SiteQuality
SIO_000300: 2.1869e1

VQSLOD
type: SiteQuality
SIO_000300: -4.362e0

MQRankSum
type: SiteQuality
SIO_000300: -7.43e-1

MQ
type: SiteQuality
SIO_000300: 5.92e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.486e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.435e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.5e-1

DP
type: SiteQuality
SIO_000300: 2.720626e6

GenotypeQuality
all individuals: 292
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2664
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1285
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2776
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 607
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 668
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3164
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14509
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 13950
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9758
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 764
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6002
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61518
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.34852043212776e-4
allele num: 8516
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6004
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12426
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.92e1

MQRankSum
type: SiteQuality
SIO_000300: -7.43e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.362e0

FS
type: SiteQuality
SIO_000300: 2.1869e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 9.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.486e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.435e0

QD
type: SiteQuality
SIO_000300: 1.297e1

DP
type: SiteQuality
SIO_000300: 2.720626e6

GenotypeQuality
all individuals: 34
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15661
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9080
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 6486
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6182
num of homozygotes: 0

South Asian
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allele count: 3
allele frequency: 2.306273062730627e-4
allele num: 13008
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 63016
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.73e0

MQ
type: SiteQuality
SIO_000300: 5.851e1

InbreedingCoeff
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MQRankSum
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SIO_000300: -2.844e0

DP
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.012e0

FS
type: SiteQuality
SIO_000300: 3.9644e1

ClippingRankSum
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SIO_000300: 1.15e0

QD
type: SiteQuality
SIO_000300: 2.95e0

VQSLOD
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SIO_000300: -5.5e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 63086
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 10242
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 806
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6180
num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.098901098901099e-4
allele num: 9100
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
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DP
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
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FS
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MQRankSum
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SIO_000300: 1.5e-2

InbreedingCoeff
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SIO_000300: 1.5e-3

BaseQRankSum
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SIO_000300: -1.643e0

MQ
type: SiteQuality
SIO_000300: 5.725e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 806
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 9100
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 13048
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6180
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10242
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.585137748470342e-5
allele num: 63086
num of homozygotes: 0

ReadPosRankSum
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VQSLOD
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SIO_000300: -1.986e1

InbreedingCoeff
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MQRankSum
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FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.643e0

MQ
type: SiteQuality
SIO_000300: 5.725e1

QD
type: SiteQuality
SIO_000300: 7.2e0

DP
type: SiteQuality
SIO_000300: 2.728777e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.08e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66648
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156604210039325e-4
allele num: 8646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.802e1

FS
type: SiteQuality
SIO_000300: 5.808e0

InbreedingCoeff
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SIO_000300: -2.0e-4

MQRankSum
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SIO_000300: 1.3e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.55e-1

QD
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SIO_000300: 8.65e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.3e0

VQSLOD
type: SiteQuality
SIO_000300: -1.617e0

DP
type: SiteQuality
SIO_000300: 3.11972e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.919999999999999e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10262
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66684
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
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allele count: 7
allele frequency: 6.048038707447727e-4
allele num: 11574
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.84e-1

MQ
type: SiteQuality
SIO_000300: 5.914e1

VQSLOD
type: SiteQuality
SIO_000300: 4.2e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.39e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.1e-2

QD
type: SiteQuality
SIO_000300: 1.293e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 3.119521e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.37e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66694
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.733307377846993e-5
allele num: 10274
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.885e1

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 3.119719e6

QD
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.1808e1

BaseQRankSum
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ClippingRankSum
type: SiteQuality
SIO_000300: 3.49e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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East Asian
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European (Finnish)
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Other
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ReadPosRankSum
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DP
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MQRankSum
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MQ
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QD
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InbreedingCoeff
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FS
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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South Asian
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European (Finnish)
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allele frequency: 0.0e0
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African
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Other
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Latino
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BaseQRankSum
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MQ
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FS
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DP
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ReadPosRankSum
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MQRankSum
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VQSLOD
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QD
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ClippingRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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Latino
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Other
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European (Non-Finnish)
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African
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South Asian
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MQRankSum
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ClippingRankSum
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QD
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DP
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MQ
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Finnish)
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Latino
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East Asian
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African
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Other
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European (Non-Finnish)
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ReadPosRankSum
type: SiteQuality
SIO_000300: 7.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 3.120336e6

FS
type: SiteQuality
SIO_000300: 2.507e0

MQ
type: SiteQuality
SIO_000300: 5.845e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.95e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.46e0

VQSLOD
type: SiteQuality
SIO_000300: -8.243e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.139999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.142e1

GenotypeQuality
all individuals: 3317
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3805
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7042
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2687
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2159
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66708
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.312138728323699e-4
allele num: 8650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10276
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.08e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.093e1

FS
type: SiteQuality
SIO_000300: 4.94e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.129e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.005e0

MQ
type: SiteQuality
SIO_000300: 5.831e1

DP
type: SiteQuality
SIO_000300: 3.119785e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.57e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.7e-2

GenotypeQuality
all individuals: 86
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16861
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3149
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2688
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3796
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21167
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2159
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10272
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499115521842113e-5
allele num: 66706
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.217e0

FS
type: SiteQuality
SIO_000300: 4.486e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 7.95e-1

MQ
type: SiteQuality
SIO_000300: 5.951e1

DP
type: SiteQuality
SIO_000300: 3.119138e6

QD
type: SiteQuality
SIO_000300: 1.297e1

MQRankSum
type: SiteQuality
SIO_000300: 5.4e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.63e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.13e0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2688
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2159
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3796
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3316
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7032
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16897
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10272
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.49907057624273e-5
allele num: 66708
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.119169e6

MQ
type: SiteQuality
SIO_000300: 5.713e1

MQRankSum
type: SiteQuality
SIO_000300: 1.04e0

VQSLOD
type: SiteQuality
SIO_000300: -7.544999999999999e-1

FS
type: SiteQuality
SIO_000300: 7.41e-1

QD
type: SiteQuality
SIO_000300: 1.516e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.71e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.179999999999999e-1

GenotypeQuality
all individuals: 80
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7020
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3149
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2688
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3316
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10268
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499205421126803e-5
allele num: 66702
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.93e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.35e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 5.78e-1

FS
type: SiteQuality
SIO_000300: 1.98e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 7.67e-1

QD
type: SiteQuality
SIO_000300: 1.337e1

DP
type: SiteQuality
SIO_000300: 3.118236e6

GenotypeQuality
all individuals: 117
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2687
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21168
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 7003
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3317
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2160
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10256
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.470615455807496e-4
allele num: 8644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66700
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.738e1

QD
type: SiteQuality
SIO_000300: 1.133e1

VQSLOD
type: SiteQuality
SIO_000300: -5.678e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.590000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.216e0

MQRankSum
type: SiteQuality
SIO_000300: 1.4e0

DP
type: SiteQuality
SIO_000300: 3.116478e6

ClippingRankSum
type: SiteQuality
SIO_000300: 8.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2158
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3144
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3789
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21168
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10248
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499250374812594e-5
allele num: 66700
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.25e0

FS
type: SiteQuality
SIO_000300: 3.296e0

VQSLOD
type: SiteQuality
SIO_000300: -2.695e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.98e-1

QD
type: SiteQuality
SIO_000300: 1.139e1

MQRankSum
type: SiteQuality
SIO_000300: 5.28e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.139e0

DP
type: SiteQuality
SIO_000300: 3.115031e6

MQ
type: SiteQuality
SIO_000300: 5.829e1

GenotypeQuality
all individuals: 3313
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21172
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 2157
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6957
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3787
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3140
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 8.99685110211426e-5
allele num: 66690
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.754194303550527e-5
allele num: 10252
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.73e-1

MQ
type: SiteQuality
SIO_000300: 5.869e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.34e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.31e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.6e-2

FS
type: SiteQuality
SIO_000300: 1.525e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 1.447e1

DP
type: SiteQuality
SIO_000300: 3.113354e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.95e-1

GenotypeQuality
all individuals: 63
bin: 5.75e1
variant carriers: 7

GenotypeQuality
all individuals: 20
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2117
bin: 9.25e1
variant carriers: 16

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13330
bin: 6.25e1
variant carriers: 10

GenotypeQuality
all individuals: 1654
bin: 8.75e1
variant carriers: 14

GenotypeQuality
all individuals: 3045
bin: 7.75e1
variant carriers: 15

GenotypeQuality
all individuals: 28324
bin: 9.75e1
variant carriers: 14385

GenotypeQuality
all individuals: 2440
bin: 7.25e1
variant carriers: 6

GenotypeQuality
all individuals: 5656
bin: 6.75e1
variant carriers: 10

European (Non-Finnish)
type: Population
allele count: 7467
allele frequency: 1.119893214949907e-1
allele num: 66676
num of homozygotes: 418

African
type: Population
allele count: 205
allele frequency: 2.0e-2
allele num: 10250
num of homozygotes: 5

European (Finnish)
type: Population
allele count: 874
allele frequency: 1.32183908045977e-1
allele num: 6612
num of homozygotes: 54

Latino
type: Population
allele count: 644
allele frequency: 5.567081604426003e-2
allele num: 11568
num of homozygotes: 21

South Asian
type: Population
allele count: 6177
allele frequency: 3.741368867353119e-1
allele num: 16510
num of homozygotes: 1241

Other
type: Population
allele count: 123
allele frequency: 1.360619469026549e-1
allele num: 904
num of homozygotes: 10

East Asian
type: Population
allele count: 795
allele frequency: 9.207783182765809e-2
allele num: 8634
num of homozygotes: 34

MQ
type: SiteQuality
SIO_000300: 5.798e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.1e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.0e0

QD
type: SiteQuality
SIO_000300: 1.716e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.59e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.95e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.37e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.57e-1

DP
type: SiteQuality
SIO_000300: 3.307553e6

GenotypeQuality
all individuals: 205
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 404
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14354
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2913
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2066
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2815
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23311
bin: 9.75e1
variant carriers: 20

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 21
allele frequency: 1.271956390066626e-3
allele num: 16510
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10250
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66684
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.775e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.69e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.84e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.83e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.0e-1

QD
type: SiteQuality
SIO_000300: 1.542e1

VQSLOD
type: SiteQuality
SIO_000300: -1.146e0

FS
type: SiteQuality
SIO_000300: 2.001e0

DP
type: SiteQuality
SIO_000300: 3.080696e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.11e-2

GenotypeQuality
all individuals: 192
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14067
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2912
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3329
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3743
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23311
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 80
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6296
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 457
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.158480074142725e-4
allele num: 8632
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.763718023823472e-5
allele num: 10242
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66690
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.19e0

FS
type: SiteQuality
SIO_000300: 2.975e0

MQRankSum
type: SiteQuality
SIO_000300: 8.32e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.65e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.31e0

QD
type: SiteQuality
SIO_000300: 1.649e1

MQ
type: SiteQuality
SIO_000300: 5.888e1

VQSLOD
type: SiteQuality
SIO_000300: -7.008e-1

DP
type: SiteQuality
SIO_000300: 3.078036e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

GenotypeQuality
all individuals: 76
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 13999
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variant carriers: 0

GenotypeQuality
all individuals: 6285
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499700059988002e-5
allele num: 66680
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 3.910068426197458e-4
allele num: 10230
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.55e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.953e0

FS
type: SiteQuality
SIO_000300: 5.141e0

QD
type: SiteQuality
SIO_000300: 1.267e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.46e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.919e-1

DP
type: SiteQuality
SIO_000300: 3.077444e6

MQ
type: SiteQuality
SIO_000300: 5.781e1

MQRankSum
type: SiteQuality
SIO_000300: 2.27e-1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 27
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variant carriers: 0

GenotypeQuality
all individuals: 270
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variant carriers: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.63821892393321e-4
allele num: 8624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66672
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10216
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.47e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.36e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.568e1

VQSLOD
type: SiteQuality
SIO_000300: -9.19e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.05e-1

DP
type: SiteQuality
SIO_000300: 3.073024e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.33e-1

MQ
type: SiteQuality
SIO_000300: 5.675e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3699
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16440
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.158748551564311e-4
allele num: 8630
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9958
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65956
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.004e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.64e-1

DP
type: SiteQuality
SIO_000300: 1.990531e6

VQSLOD
type: SiteQuality
SIO_000300: 4.71e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.25e-1

MQ
type: SiteQuality
SIO_000300: 5.971e1

MQRankSum
type: SiteQuality
SIO_000300: 1.05e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.24e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1028
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.317497103128621e-4
allele num: 8630
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65940
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9966
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16440
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.990513e6

FS
type: SiteQuality
SIO_000300: 4.641e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.414e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.462e0

MQRankSum
type: SiteQuality
SIO_000300: 4.65e-1

QD
type: SiteQuality
SIO_000300: 7.91e0

VQSLOD
type: SiteQuality
SIO_000300: -2.582e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.46e0

MQ
type: SiteQuality
SIO_000300: 5.869e1

GenotypeQuality
all individuals: 38660
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 40
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GenotypeQuality
all individuals: 864
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 500
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GenotypeQuality
all individuals: 10186
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variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65920
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9964
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.216397031991242e-4
allele num: 16442
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.674e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.8e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.78e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.68e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.58e0

MQ
type: SiteQuality
SIO_000300: 5.999e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.500000000000001e-2

QD
type: SiteQuality
SIO_000300: 1.286e1

DP
type: SiteQuality
SIO_000300: 1.990996e6

GenotypeQuality
all individuals: 185
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65916
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9968
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.216397031991242e-4
allele num: 16442
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.11e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.991117e6

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.998e1

FS
type: SiteQuality
SIO_000300: 6.93e0

QD
type: SiteQuality
SIO_000300: 1.268e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.382e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.76e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16446
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9966
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.517128379403465e-5
allele num: 65914
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.25e0

MQ
type: SiteQuality
SIO_000300: 5.969e1

FS
type: SiteQuality
SIO_000300: 4.789e0

BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -1.3e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.991209e6

ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.885e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 38792
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9964
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65918
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.0790273556231e-5
allele num: 16450
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.941e1

MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.268e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 594
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9958
num of homozygotes: 0

Latino
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allele count: 53
allele frequency: 4.580812445980986e-3
allele num: 11570
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65910
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16448
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.992223e6

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.21e-1

MQ
type: SiteQuality
SIO_000300: 5.915e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.31e-1

InbreedingCoeff
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 4.261e0

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 3.71e-1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 502
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38912
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9948
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.080505898090721e-5
allele num: 16446
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.445e0

QD
type: SiteQuality
SIO_000300: 1.22e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

VQSLOD
type: SiteQuality
SIO_000300: -4.029e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.12e0

FS
type: SiteQuality
SIO_000300: 4.561e0

MQ
type: SiteQuality
SIO_000300: 5.915e1

MQRankSum
type: SiteQuality
SIO_000300: -8.46e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.65e0

DP
type: SiteQuality
SIO_000300: 1.989718e6

GenotypeQuality
all individuals: 152
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1035
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10198
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3663
bin: 9.75e1
variant carriers: 5

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 956
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 503
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.035085589413621e-5
allele num: 65896
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.008032128514056e-4
allele num: 9960
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159285879897983e-4
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16458
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.77e0

MQRankSum
type: SiteQuality
SIO_000300: 5.71e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.19e-1

DP
type: SiteQuality
SIO_000300: 1.990803e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.14e0

VQSLOD
type: SiteQuality
SIO_000300: 1.55e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.57e0

QD
type: SiteQuality
SIO_000300: 1.048e1

MQ
type: SiteQuality
SIO_000300: 5.942e1

GenotypeQuality
all individuals: 10199
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3658
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 1
allele frequency: 1.159285879897983e-4
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9960
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16462
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65900
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.149999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.97e-1

DP
type: SiteQuality
SIO_000300: 1.990858e6

FS
type: SiteQuality
SIO_000300: 2.419e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.857e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.07e0

VQSLOD
type: SiteQuality
SIO_000300: -1.1e-1

QD
type: SiteQuality
SIO_000300: 9.08e0

GenotypeQuality
all individuals: 36
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2130
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variant carriers: 0

GenotypeQuality
all individuals: 39167
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.518602885345482e-5
allele num: 65850
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9960
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16466
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.877e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 3.903e0

MQRankSum
type: SiteQuality
SIO_000300: 6.37e-1

MQ
type: SiteQuality
SIO_000300: 5.887e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.569e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.38e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.912e0

DP
type: SiteQuality
SIO_000300: 1.990851e6

QD
type: SiteQuality
SIO_000300: 1.064e1

GenotypeQuality
all individuals: 10198
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2131
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variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3655
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 598
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variant carriers: 0

GenotypeQuality
all individuals: 1859
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.519064256418047e-5
allele num: 65830
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16466
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9962
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.51e-1

QD
type: SiteQuality
SIO_000300: 1.167e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.931e1

MQRankSum
type: SiteQuality
SIO_000300: -3.62e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.49e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.4e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.33e-1

DP
type: SiteQuality
SIO_000300: 1.990493e6

GenotypeQuality
all individuals: 598
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2130
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 10194
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variant carriers: 0

GenotypeQuality
all individuals: 1029
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variant carriers: 0

GenotypeQuality
all individuals: 1071
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3653
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.518879674352198e-5
allele num: 65838
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9960
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.46e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.41e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.17e0

MQ
type: SiteQuality
SIO_000300: 5.904e1

QD
type: SiteQuality
SIO_000300: 1.462e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.899999999999999e-1

FS
type: SiteQuality
SIO_000300: 4.9e0

DP
type: SiteQuality
SIO_000300: 1.990271e6

VQSLOD
type: SiteQuality
SIO_000300: -2.561e-1

GenotypeQuality
all individuals: 47
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1849
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variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 502
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variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2125
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variant carriers: 0

GenotypeQuality
all individuals: 64
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variant carriers: 0

GenotypeQuality
all individuals: 597
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variant carriers: 0

GenotypeQuality
all individuals: 3650
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9940
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.520403819254394e-5
allele num: 65772
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.988342e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.66e0

MQ
type: SiteQuality
SIO_000300: 5.925e1

QD
type: SiteQuality
SIO_000300: 1.155e1

VQSLOD
type: SiteQuality
SIO_000300: 8.9e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.47e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.524e0

GenotypeQuality
all individuals: 2125
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 597
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 2.012477359629704e-4
allele num: 9938
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65776
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.64e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.62e0

MQ
type: SiteQuality
SIO_000300: 5.911e1

DP
type: SiteQuality
SIO_000300: 1.988057e6

QD
type: SiteQuality
SIO_000300: 1.174e1

MQRankSum
type: SiteQuality
SIO_000300: 3.15e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.14e-1

FS
type: SiteQuality
SIO_000300: 6.365e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.043e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

GenotypeQuality
all individuals: 10155
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2120
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GenotypeQuality
all individuals: 1024
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 34
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GenotypeQuality
all individuals: 3648
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.521097624045511e-5
allele num: 65742
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9934
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.15e0

DP
type: SiteQuality
SIO_000300: 1.98706e6

MQRankSum
type: SiteQuality
SIO_000300: -5.92e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.52e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 7.24e-1

FS
type: SiteQuality
SIO_000300: 1.155e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.63e-1

QD
type: SiteQuality
SIO_000300: 1.17e1

GenotypeQuality
all individuals: 68
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 7
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GenotypeQuality
all individuals: 75
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GenotypeQuality
all individuals: 72
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variant carriers: 0

GenotypeQuality
all individuals: 1023
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variant carriers: 0

GenotypeQuality
all individuals: 502
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variant carriers: 0

GenotypeQuality
all individuals: 2116
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9920
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65716
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.163061177017911e-4
allele num: 8598
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.82e0

MQ
type: SiteQuality
SIO_000300: 5.97e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.25e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.2e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e0

QD
type: SiteQuality
SIO_000300: 1.066e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.76e0

DP
type: SiteQuality
SIO_000300: 1.986091e6

GenotypeQuality
all individuals: 45
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1846
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 38865
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 595
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 501
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1022
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3643
bin: 9.75e1
variant carriers: 3

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9920
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65682
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16476
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.596952908587258e-4
allele num: 11552
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.092e0

MQRankSum
type: SiteQuality
SIO_000300: 3.51e-1

DP
type: SiteQuality
SIO_000300: 1.985297e6

MQ
type: SiteQuality
SIO_000300: 5.913e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 5.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.15e-1

FS
type: SiteQuality
SIO_000300: 9.65e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.44e-1

QD
type: SiteQuality
SIO_000300: 1.047e1

GenotypeQuality
all individuals: 1002
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10075
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38617
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3625
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 581
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.010713563776026e-4
allele num: 9894
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16474
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.851e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.9e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.01e-1

FS
type: SiteQuality
SIO_000300: 2.684e0

MQ
type: SiteQuality
SIO_000300: 5.881e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

DP
type: SiteQuality
SIO_000300: 1.977874e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.458e0

MQRankSum
type: SiteQuality
SIO_000300: 1.43e0

QD
type: SiteQuality
SIO_000300: 7.5e0

GenotypeQuality
all individuals: 3611
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 43
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 998
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1802
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1796
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 483
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10035
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 575
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9886
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.584071878247051e-5
allele num: 65444
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.12e-1

DP
type: SiteQuality
SIO_000300: 1.974758e6

MQ
type: SiteQuality
SIO_000300: 5.971e1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.0e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.03e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.5e-2

QD
type: SiteQuality
SIO_000300: 1.364e1

FS
type: SiteQuality
SIO_000300: 4.758e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.13e-1