22-19902731-ACT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19902731
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 19902729
    reference: chr 22
allele count: 5
allele frequency: 4.555725635979299e-5
allele num: 109752
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000491939
  gene symbol: TXNRD2
  hgvsc: ENST00000491939.1:n.581+4_581+5delAG
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000496729
  gene symbol: TXNRD2
  hgvsc: ENST00000496729.1:n.600_601delAG
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439570
  ensembl transcript: ENST00000542719
  gene symbol: TXNRD2
  hgvsc: ENST00000542719.1:c.501+4_501+5delAG
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000494454
  gene symbol: TXNRD2
  hgvsc: ENST00000494454.1:n.665+4_665+5delAG
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439314
  ensembl transcript: ENST00000535882
  gene symbol: TXNRD2
  hgvsc: ENST00000535882.1:c.588+4_588+5delAG
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383369
  ensembl transcript: ENST00000400525
  gene symbol: TXNRD2
  hgvsc: ENST00000400525.1:c.522+4_522+5delAG
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000334451
  ensembl transcript: ENST00000334363
  gene symbol: TXNRD2
  hgvsc: ENST00000334363.9:c.591+4_591+5delAG
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000474308
  gene symbol: TXNRD2
  hgvsc: ENST00000474308.1:n.538+4_538+5delAG
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383363
  ensembl transcript: ENST00000400519
  gene symbol: TXNRD2
  hgvsc: ENST00000400519.1:c.588+4_588+5delAG
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000484672
  gene symbol: TXNRD2
  hgvsc: ENST00000484672.1:n.221+4_221+5delAG
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000471835
  gene symbol: TXNRD2
  hgvsc: ENST00000471835.1:n.136+4_136+5delAG
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383365
  ensembl transcript: ENST00000400521
  gene symbol: TXNRD2
  hgvsc: ENST00000400521.1:c.591+4_591+5delAG
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383362
  ensembl transcript: ENST00000400518
  gene symbol: TXNRD2
  hgvsc: ENST00000400518.1:c.501+4_501+5delAG
  variant of: http://identifiers.org/hgnc/18155
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5176
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30233
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1880
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7864
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5341
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.591+4_591+5delAG
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: ACT
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

22-19902731-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19902731
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 19902731
    reference: chr 22
allele count: 1
allele frequency: 9.111451271958598e-6
allele num: 109752
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439570
  ensembl transcript: ENST00000542719
  gene symbol: TXNRD2
  hgvsc: ENST00000542719.1:c.501+6T>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000496729
  gene symbol: TXNRD2
  hgvsc: ENST00000496729.1:n.602T>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439314
  ensembl transcript: ENST00000535882
  gene symbol: TXNRD2
  hgvsc: ENST00000535882.1:c.588+6T>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000494454
  gene symbol: TXNRD2
  hgvsc: ENST00000494454.1:n.665+6T>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383365
  ensembl transcript: ENST00000400521
  gene symbol: TXNRD2
  hgvsc: ENST00000400521.1:c.591+6T>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000474308
  gene symbol: TXNRD2
  hgvsc: ENST00000474308.1:n.538+6T>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383369
  ensembl transcript: ENST00000400525
  gene symbol: TXNRD2
  hgvsc: ENST00000400525.1:c.522+6T>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000484672
  gene symbol: TXNRD2
  hgvsc: ENST00000484672.1:n.221+6T>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383362
  ensembl transcript: ENST00000400518
  gene symbol: TXNRD2
  hgvsc: ENST00000400518.1:c.501+6T>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000491939
  gene symbol: TXNRD2
  hgvsc: ENST00000491939.1:n.581+6T>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383363
  ensembl transcript: ENST00000400519
  gene symbol: TXNRD2
  hgvsc: ENST00000400519.1:c.588+6T>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000471835
  gene symbol: TXNRD2
  hgvsc: ENST00000471835.1:n.136+6T>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000334451
  ensembl transcript: ENST00000334363
  gene symbol: TXNRD2
  hgvsc: ENST00000334363.9:c.591+6T>C
  variant of: http://identifiers.org/hgnc/18155
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2226
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1186
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1880
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5341
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30233
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7864
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.591+6T>C
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

22-19902736-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19902736
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 19902736
    reference: chr 22
allele count: 12
allele frequency: 1.086818700527107e-4
allele num: 110414
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439570
  ensembl transcript: ENST00000542719
  gene symbol: TXNRD2
  hgvsc: ENST00000542719.1:c.501+1G>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383363
  ensembl transcript: ENST00000400519
  gene symbol: TXNRD2
  hgvsc: ENST00000400519.1:c.588+1G>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000496729
  gene symbol: TXNRD2
  hgvsc: ENST00000496729.1:n.597G>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000474308
  gene symbol: TXNRD2
  hgvsc: ENST00000474308.1:n.538+1G>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439314
  ensembl transcript: ENST00000535882
  gene symbol: TXNRD2
  hgvsc: ENST00000535882.1:c.588+1G>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000471835
  gene symbol: TXNRD2
  hgvsc: ENST00000471835.1:n.136+1G>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383369
  ensembl transcript: ENST00000400525
  gene symbol: TXNRD2
  hgvsc: ENST00000400525.1:c.522+1G>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000494454
  gene symbol: TXNRD2
  hgvsc: ENST00000494454.1:n.665+1G>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000334451
  ensembl transcript: ENST00000334363
  gene symbol: TXNRD2
  hgvsc: ENST00000334363.9:c.591+1G>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000491939
  gene symbol: TXNRD2
  hgvsc: ENST00000491939.1:n.581+1G>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000484672
  gene symbol: TXNRD2
  hgvsc: ENST00000484672.1:n.221+1G>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383362
  ensembl transcript: ENST00000400518
  gene symbol: TXNRD2
  hgvsc: ENST00000400518.1:c.501+1G>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383365
  ensembl transcript: ENST00000400521
  gene symbol: TXNRD2
  hgvsc: ENST00000400521.1:c.591+1G>C
  variant of: http://identifiers.org/hgnc/18155
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4986
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1687
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1293
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 30935
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4511
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2226
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.591+1G>C
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

22-19902737-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19902737
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 19902737
    reference: chr 22
allele count: 1
allele frequency: 9.043717329571148e-6
allele num: 110574
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000496729
  gene symbol: TXNRD2
  hgvsc: ENST00000496729.1:n.596C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439570
  ensembl transcript: ENST00000542719
  gene symbol: TXNRD2
  hgvsc: ENST00000542719.1:c.501C>T
  hgvsp: ENST00000542719.1:c.501C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439314
  ensembl transcript: ENST00000535882
  gene symbol: TXNRD2
  hgvsc: ENST00000535882.1:c.588C>T
  hgvsp: ENST00000535882.1:c.588C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383365
  ensembl transcript: ENST00000400521
  gene symbol: TXNRD2
  hgvsc: ENST00000400521.1:c.591C>T
  hgvsp: ENST00000400521.1:c.591C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000334451
  ensembl transcript: ENST00000334363
  gene symbol: TXNRD2
  hgvsc: ENST00000334363.9:c.591C>T
  hgvsp: ENST00000334363.9:c.591C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000484672
  gene symbol: TXNRD2
  hgvsc: ENST00000484672.1:n.221C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000491939
  gene symbol: TXNRD2
  hgvsc: ENST00000491939.1:n.581C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000471835
  gene symbol: TXNRD2
  hgvsc: ENST00000471835.1:n.136C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000474308
  gene symbol: TXNRD2
  hgvsc: ENST00000474308.1:n.538C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000494454
  gene symbol: TXNRD2
  hgvsc: ENST00000494454.1:n.665C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383369
  ensembl transcript: ENST00000400525
  gene symbol: TXNRD2
  hgvsc: ENST00000400525.1:c.522C>T
  hgvsp: ENST00000400525.1:c.522C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383363
  ensembl transcript: ENST00000400519
  gene symbol: TXNRD2
  hgvsc: ENST00000400519.1:c.588C>T
  hgvsp: ENST00000400519.1:c.588C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383362
  ensembl transcript: ENST00000400518
  gene symbol: TXNRD2
  hgvsc: ENST00000400518.1:c.501C>T
  hgvsp: ENST00000400518.1:c.501C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18155
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2226
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8405
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4356
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.591C>T
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

22-19902740-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19902740
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 19902740
    reference: chr 22
allele count: 2
allele frequency: 1.802386359540031e-5
allele num: 110964
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383363
  ensembl transcript: ENST00000400519
  gene symbol: TXNRD2
  hgvsc: ENST00000400519.1:c.585G>A
  hgvsp: ENST00000400519.1:c.585G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439314
  ensembl transcript: ENST00000535882
  gene symbol: TXNRD2
  hgvsc: ENST00000535882.1:c.585G>A
  hgvsp: ENST00000535882.1:c.585G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383365
  ensembl transcript: ENST00000400521
  gene symbol: TXNRD2
  hgvsc: ENST00000400521.1:c.588G>A
  hgvsp: ENST00000400521.1:c.588G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000334451
  ensembl transcript: ENST00000334363
  gene symbol: TXNRD2
  hgvsc: ENST00000334363.9:c.588G>A
  hgvsp: ENST00000334363.9:c.588G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000484672
  gene symbol: TXNRD2
  hgvsc: ENST00000484672.1:n.218G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439570
  ensembl transcript: ENST00000542719
  gene symbol: TXNRD2
  hgvsc: ENST00000542719.1:c.498G>A
  hgvsp: ENST00000542719.1:c.498G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383369
  ensembl transcript: ENST00000400525
  gene symbol: TXNRD2
  hgvsc: ENST00000400525.1:c.519G>A
  hgvsp: ENST00000400525.1:c.519G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000471835
  gene symbol: TXNRD2
  hgvsc: ENST00000471835.1:n.133G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000491939
  gene symbol: TXNRD2
  hgvsc: ENST00000491939.1:n.578G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000474308
  gene symbol: TXNRD2
  hgvsc: ENST00000474308.1:n.535G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000494454
  gene symbol: TXNRD2
  hgvsc: ENST00000494454.1:n.662G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383362
  ensembl transcript: ENST00000400518
  gene symbol: TXNRD2
  hgvsc: ENST00000400518.1:c.498G>A
  hgvsp: ENST00000400518.1:c.498G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000496729
  gene symbol: TXNRD2
  hgvsc: ENST00000496729.1:n.593G>A
  variant of: http://identifiers.org/hgnc/18155
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1557
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31389
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4021
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8674
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4729
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2226
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr196Thr
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD

22-19902741-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19902741
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 19902741
    reference: chr 22
allele count: 1
allele frequency: 8.991188635137566e-6
allele num: 111220
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383363
  ensembl transcript: ENST00000400519
  gene symbol: TXNRD2
  hgvsc: ENST00000400519.1:c.584C>T
  hgvsp: ENSP00000383363.1:p.Thr195Met
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000471835
  gene symbol: TXNRD2
  hgvsc: ENST00000471835.1:n.132C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000474308
  gene symbol: TXNRD2
  hgvsc: ENST00000474308.1:n.534C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383365
  ensembl transcript: ENST00000400521
  gene symbol: TXNRD2
  hgvsc: ENST00000400521.1:c.587C>T
  hgvsp: ENSP00000383365.1:p.Thr196Met
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383369
  ensembl transcript: ENST00000400525
  gene symbol: TXNRD2
  hgvsc: ENST00000400525.1:c.518C>T
  hgvsp: ENSP00000383369.2:p.Thr173Met
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000496729
  gene symbol: TXNRD2
  hgvsc: ENST00000496729.1:n.592C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439314
  ensembl transcript: ENST00000535882
  gene symbol: TXNRD2
  hgvsc: ENST00000535882.1:c.584C>T
  hgvsp: ENSP00000439314.1:p.Thr195Met
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383362
  ensembl transcript: ENST00000400518
  gene symbol: TXNRD2
  hgvsc: ENST00000400518.1:c.497C>T
  hgvsp: ENSP00000383362.1:p.Thr166Met
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000484672
  gene symbol: TXNRD2
  hgvsc: ENST00000484672.1:n.217C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000334451
  ensembl transcript: ENST00000334363
  gene symbol: TXNRD2
  hgvsc: ENST00000334363.9:c.587C>T
  hgvsp: ENSP00000334451.9:p.Thr196Met
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000491939
  gene symbol: TXNRD2
  hgvsc: ENST00000491939.1:n.577C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000494454
  gene symbol: TXNRD2
  hgvsc: ENST00000494454.1:n.661C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439570
  ensembl transcript: ENST00000542719
  gene symbol: TXNRD2
  hgvsc: ENST00000542719.1:c.497C>T
  hgvsp: ENSP00000439570.1:p.Thr166Met
  variant of: http://identifiers.org/hgnc/18155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2226
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8819
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31689
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4612
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr196Met
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum

22-19902742-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19902742
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 19902742
    reference: chr 22
allele count: 2
allele frequency: 1.794848783989949e-5
allele num: 111430
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000494454
  gene symbol: TXNRD2
  hgvsc: ENST00000494454.1:n.660A>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383362
  ensembl transcript: ENST00000400518
  gene symbol: TXNRD2
  hgvsc: ENST00000400518.1:c.496A>G
  hgvsp: ENSP00000383362.1:p.Thr166Ala
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000491939
  gene symbol: TXNRD2
  hgvsc: ENST00000491939.1:n.576A>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383363
  ensembl transcript: ENST00000400519
  gene symbol: TXNRD2
  hgvsc: ENST00000400519.1:c.583A>G
  hgvsp: ENSP00000383363.1:p.Thr195Ala
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000471835
  gene symbol: TXNRD2
  hgvsc: ENST00000471835.1:n.131A>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383365
  ensembl transcript: ENST00000400521
  gene symbol: TXNRD2
  hgvsc: ENST00000400521.1:c.586A>G
  hgvsp: ENSP00000383365.1:p.Thr196Ala
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383369
  ensembl transcript: ENST00000400525
  gene symbol: TXNRD2
  hgvsc: ENST00000400525.1:c.517A>G
  hgvsp: ENSP00000383369.2:p.Thr173Ala
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000496729
  gene symbol: TXNRD2
  hgvsc: ENST00000496729.1:n.591A>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000334451
  ensembl transcript: ENST00000334363
  gene symbol: TXNRD2
  hgvsc: ENST00000334363.9:c.586A>G
  hgvsp: ENSP00000334451.9:p.Thr196Ala
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000484672
  gene symbol: TXNRD2
  hgvsc: ENST00000484672.1:n.216A>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439570
  ensembl transcript: ENST00000542719
  gene symbol: TXNRD2
  hgvsc: ENST00000542719.1:c.496A>G
  hgvsp: ENSP00000439570.1:p.Thr166Ala
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000474308
  gene symbol: TXNRD2
  hgvsc: ENST00000474308.1:n.533A>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439314
  ensembl transcript: ENST00000535882
  gene symbol: TXNRD2
  hgvsc: ENST00000535882.1:c.583A>G
  hgvsp: ENSP00000439314.1:p.Thr195Ala
  variant of: http://identifiers.org/hgnc/18155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31852
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8897
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3721
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1312
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1382
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4544
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr196Ala
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ

22-19902743-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19902743
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 19902743
    reference: chr 22
allele count: 3
allele frequency: 2.690969107674644e-5
allele num: 111484
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383365
  ensembl transcript: ENST00000400521
  gene symbol: TXNRD2
  hgvsc: ENST00000400521.1:c.585C>T
  hgvsp: ENST00000400521.1:c.585C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383369
  ensembl transcript: ENST00000400525
  gene symbol: TXNRD2
  hgvsc: ENST00000400525.1:c.516C>T
  hgvsp: ENST00000400525.1:c.516C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000491939
  gene symbol: TXNRD2
  hgvsc: ENST00000491939.1:n.575C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383362
  ensembl transcript: ENST00000400518
  gene symbol: TXNRD2
  hgvsc: ENST00000400518.1:c.495C>T
  hgvsp: ENST00000400518.1:c.495C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439570
  ensembl transcript: ENST00000542719
  gene symbol: TXNRD2
  hgvsc: ENST00000542719.1:c.495C>T
  hgvsp: ENST00000542719.1:c.495C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000334451
  ensembl transcript: ENST00000334363
  gene symbol: TXNRD2
  hgvsc: ENST00000334363.9:c.585C>T
  hgvsp: ENST00000334363.9:c.585C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439314
  ensembl transcript: ENST00000535882
  gene symbol: TXNRD2
  hgvsc: ENST00000535882.1:c.582C>T
  hgvsp: ENST00000535882.1:c.582C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000496729
  gene symbol: TXNRD2
  hgvsc: ENST00000496729.1:n.590C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000474308
  gene symbol: TXNRD2
  hgvsc: ENST00000474308.1:n.532C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000484672
  gene symbol: TXNRD2
  hgvsc: ENST00000484672.1:n.215C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383363
  ensembl transcript: ENST00000400519
  gene symbol: TXNRD2
  hgvsc: ENST00000400519.1:c.582C>T
  hgvsp: ENST00000400519.1:c.582C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000494454
  gene symbol: TXNRD2
  hgvsc: ENST00000494454.1:n.659C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000471835
  gene symbol: TXNRD2
  hgvsc: ENST00000471835.1:n.130C>T
  variant of: http://identifiers.org/hgnc/18155
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8981
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31824
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4484
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Pro195Pro
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ

22-19902743-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19902743
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 19902743
    reference: chr 22
allele count: 11
allele frequency: 9.866886728140361e-5
allele num: 111484
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383362
  ensembl transcript: ENST00000400518
  gene symbol: TXNRD2
  hgvsc: ENST00000400518.1:c.495C>G
  hgvsp: ENST00000400518.1:c.495C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383365
  ensembl transcript: ENST00000400521
  gene symbol: TXNRD2
  hgvsc: ENST00000400521.1:c.585C>G
  hgvsp: ENST00000400521.1:c.585C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000334451
  ensembl transcript: ENST00000334363
  gene symbol: TXNRD2
  hgvsc: ENST00000334363.9:c.585C>G
  hgvsp: ENST00000334363.9:c.585C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383369
  ensembl transcript: ENST00000400525
  gene symbol: TXNRD2
  hgvsc: ENST00000400525.1:c.516C>G
  hgvsp: ENST00000400525.1:c.516C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000484672
  gene symbol: TXNRD2
  hgvsc: ENST00000484672.1:n.215C>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000471835
  gene symbol: TXNRD2
  hgvsc: ENST00000471835.1:n.130C>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000496729
  gene symbol: TXNRD2
  hgvsc: ENST00000496729.1:n.590C>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439314
  ensembl transcript: ENST00000535882
  gene symbol: TXNRD2
  hgvsc: ENST00000535882.1:c.582C>G
  hgvsp: ENST00000535882.1:c.582C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439570
  ensembl transcript: ENST00000542719
  gene symbol: TXNRD2
  hgvsc: ENST00000542719.1:c.495C>G
  hgvsp: ENST00000542719.1:c.495C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383363
  ensembl transcript: ENST00000400519
  gene symbol: TXNRD2
  hgvsc: ENST00000400519.1:c.582C>G
  hgvsp: ENST00000400519.1:c.582C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000474308
  gene symbol: TXNRD2
  hgvsc: ENST00000474308.1:n.532C>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000491939
  gene symbol: TXNRD2
  hgvsc: ENST00000491939.1:n.575C>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000494454
  gene symbol: TXNRD2
  hgvsc: ENST00000494454.1:n.659C>G
  variant of: http://identifiers.org/hgnc/18155
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8981
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3656
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4484
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2226
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro195Pro
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

22-19902750-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19902750
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 19902750
    reference: chr 22
allele count: 1
allele frequency: 8.909955984817435e-6
allele num: 112234
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000334451
  ensembl transcript: ENST00000334363
  gene symbol: TXNRD2
  hgvsc: ENST00000334363.9:c.578G>A
  hgvsp: ENSP00000334451.9:p.Arg193Lys
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000484672
  gene symbol: TXNRD2
  hgvsc: ENST00000484672.1:n.208G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439314
  ensembl transcript: ENST00000535882
  gene symbol: TXNRD2
  hgvsc: ENST00000535882.1:c.575G>A
  hgvsp: ENSP00000439314.1:p.Arg192Lys
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383362
  ensembl transcript: ENST00000400518
  gene symbol: TXNRD2
  hgvsc: ENST00000400518.1:c.488G>A
  hgvsp: ENSP00000383362.1:p.Arg163Lys
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000494454
  gene symbol: TXNRD2
  hgvsc: ENST00000494454.1:n.652G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383369
  ensembl transcript: ENST00000400525
  gene symbol: TXNRD2
  hgvsc: ENST00000400525.1:c.509G>A
  hgvsp: ENSP00000383369.2:p.Arg170Lys
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439570
  ensembl transcript: ENST00000542719
  gene symbol: TXNRD2
  hgvsc: ENST00000542719.1:c.488G>A
  hgvsp: ENSP00000439570.1:p.Arg163Lys
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383363
  ensembl transcript: ENST00000400519
  gene symbol: TXNRD2
  hgvsc: ENST00000400519.1:c.575G>A
  hgvsp: ENSP00000383363.1:p.Arg192Lys
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383365
  ensembl transcript: ENST00000400521
  gene symbol: TXNRD2
  hgvsc: ENST00000400521.1:c.578G>A
  hgvsp: ENSP00000383365.1:p.Arg193Lys
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000491939
  gene symbol: TXNRD2
  hgvsc: ENST00000491939.1:n.568G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000471835
  gene symbol: TXNRD2
  hgvsc: ENST00000471835.1:n.123G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000496729
  gene symbol: TXNRD2
  hgvsc: ENST00000496729.1:n.583G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000474308
  gene symbol: TXNRD2
  hgvsc: ENST00000474308.1:n.525G>A
  variant of: http://identifiers.org/hgnc/18155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4133
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31965
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9568
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3282
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg193Lys
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP

22-19902753-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19902753
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 19902753
    reference: chr 22
allele count: 1
allele frequency: 8.886835042567939e-6
allele num: 112526
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000494454
  gene symbol: TXNRD2
  hgvsc: ENST00000494454.1:n.649C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439570
  ensembl transcript: ENST00000542719
  gene symbol: TXNRD2
  hgvsc: ENST00000542719.1:c.485C>T
  hgvsp: ENSP00000439570.1:p.Pro162Leu
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383362
  ensembl transcript: ENST00000400518
  gene symbol: TXNRD2
  hgvsc: ENST00000400518.1:c.485C>T
  hgvsp: ENSP00000383362.1:p.Pro162Leu
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000491939
  gene symbol: TXNRD2
  hgvsc: ENST00000491939.1:n.565C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000474308
  gene symbol: TXNRD2
  hgvsc: ENST00000474308.1:n.522C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000496729
  gene symbol: TXNRD2
  hgvsc: ENST00000496729.1:n.580C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383369
  ensembl transcript: ENST00000400525
  gene symbol: TXNRD2
  hgvsc: ENST00000400525.1:c.506C>T
  hgvsp: ENSP00000383369.2:p.Pro169Leu
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000334451
  ensembl transcript: ENST00000334363
  gene symbol: TXNRD2
  hgvsc: ENST00000334363.9:c.575C>T
  hgvsp: ENSP00000334451.9:p.Pro192Leu
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383363
  ensembl transcript: ENST00000400519
  gene symbol: TXNRD2
  hgvsc: ENST00000400519.1:c.572C>T
  hgvsp: ENSP00000383363.1:p.Pro191Leu
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000484672
  gene symbol: TXNRD2
  hgvsc: ENST00000484672.1:n.205C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000471835
  gene symbol: TXNRD2
  hgvsc: ENST00000471835.1:n.120C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439314
  ensembl transcript: ENST00000535882
  gene symbol: TXNRD2
  hgvsc: ENST00000535882.1:c.572C>T
  hgvsp: ENSP00000439314.1:p.Pro191Leu
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383365
  ensembl transcript: ENST00000400521
  gene symbol: TXNRD2
  hgvsc: ENST00000400521.1:c.575C>T
  hgvsp: ENSP00000383365.1:p.Pro192Leu
  variant of: http://identifiers.org/hgnc/18155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32247
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2227
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3988
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3093
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro192Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: European (Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

22-19902756-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19902756
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 19902756
    reference: chr 22
allele count: 1
allele frequency: 8.877368037924116e-6
allele num: 112646
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000474308
  gene symbol: TXNRD2
  hgvsc: ENST00000474308.1:n.519G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383365
  ensembl transcript: ENST00000400521
  gene symbol: TXNRD2
  hgvsc: ENST00000400521.1:c.572G>A
  hgvsp: ENSP00000383365.1:p.Arg191Gln
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000334451
  ensembl transcript: ENST00000334363
  gene symbol: TXNRD2
  hgvsc: ENST00000334363.9:c.572G>A
  hgvsp: ENSP00000334451.9:p.Arg191Gln
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383369
  ensembl transcript: ENST00000400525
  gene symbol: TXNRD2
  hgvsc: ENST00000400525.1:c.503G>A
  hgvsp: ENSP00000383369.2:p.Arg168Gln
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000491939
  gene symbol: TXNRD2
  hgvsc: ENST00000491939.1:n.562G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000484672
  gene symbol: TXNRD2
  hgvsc: ENST00000484672.1:n.202G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383362
  ensembl transcript: ENST00000400518
  gene symbol: TXNRD2
  hgvsc: ENST00000400518.1:c.482G>A
  hgvsp: ENSP00000383362.1:p.Arg161Gln
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383363
  ensembl transcript: ENST00000400519
  gene symbol: TXNRD2
  hgvsc: ENST00000400519.1:c.569G>A
  hgvsp: ENSP00000383363.1:p.Arg190Gln
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439570
  ensembl transcript: ENST00000542719
  gene symbol: TXNRD2
  hgvsc: ENST00000542719.1:c.482G>A
  hgvsp: ENSP00000439570.1:p.Arg161Gln
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000494454
  gene symbol: TXNRD2
  hgvsc: ENST00000494454.1:n.646G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439314
  ensembl transcript: ENST00000535882
  gene symbol: TXNRD2
  hgvsc: ENST00000535882.1:c.569G>A
  hgvsp: ENSP00000439314.1:p.Arg190Gln
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000496729
  gene symbol: TXNRD2
  hgvsc: ENST00000496729.1:n.577G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000471835
  gene symbol: TXNRD2
  hgvsc: ENST00000471835.1:n.117G>A
  variant of: http://identifiers.org/hgnc/18155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2227
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2997
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3940
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32213
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9972
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg191Gln
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

22-19902757-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19902757
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 19902757
    reference: chr 22
allele count: 9
allele frequency: 7.988922028121005e-5
allele num: 112656
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383365
  ensembl transcript: ENST00000400521
  gene symbol: TXNRD2
  hgvsc: ENST00000400521.1:c.571C>T
  hgvsp: ENSP00000383365.1:p.Arg191Trp
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000496729
  gene symbol: TXNRD2
  hgvsc: ENST00000496729.1:n.576C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000484672
  gene symbol: TXNRD2
  hgvsc: ENST00000484672.1:n.201C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000474308
  gene symbol: TXNRD2
  hgvsc: ENST00000474308.1:n.518C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000334451
  ensembl transcript: ENST00000334363
  gene symbol: TXNRD2
  hgvsc: ENST00000334363.9:c.571C>T
  hgvsp: ENSP00000334451.9:p.Arg191Trp
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383362
  ensembl transcript: ENST00000400518
  gene symbol: TXNRD2
  hgvsc: ENST00000400518.1:c.481C>T
  hgvsp: ENSP00000383362.1:p.Arg161Trp
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000471835
  gene symbol: TXNRD2
  hgvsc: ENST00000471835.1:n.116C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439314
  ensembl transcript: ENST00000535882
  gene symbol: TXNRD2
  hgvsc: ENST00000535882.1:c.568C>T
  hgvsp: ENSP00000439314.1:p.Arg190Trp
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000491939
  gene symbol: TXNRD2
  hgvsc: ENST00000491939.1:n.561C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383363
  ensembl transcript: ENST00000400519
  gene symbol: TXNRD2
  hgvsc: ENST00000400519.1:c.568C>T
  hgvsp: ENSP00000383363.1:p.Arg190Trp
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000494454
  gene symbol: TXNRD2
  hgvsc: ENST00000494454.1:n.645C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439570
  ensembl transcript: ENST00000542719
  gene symbol: TXNRD2
  hgvsc: ENST00000542719.1:c.481C>T
  hgvsp: ENSP00000439570.1:p.Arg161Trp
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383369
  ensembl transcript: ENST00000400525
  gene symbol: TXNRD2
  hgvsc: ENST00000400525.1:c.502C>T
  hgvsp: ENSP00000383369.2:p.Arg168Trp
  variant of: http://identifiers.org/hgnc/18155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2943
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10074
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1524
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2227
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg191Trp
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: QD

22-19902758-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19902758
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 19902758
    reference: chr 22
allele count: 2
allele frequency: 1.772955339255004e-5
allele num: 112806
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383369
  ensembl transcript: ENST00000400525
  gene symbol: TXNRD2
  hgvsc: ENST00000400525.1:c.501G>A
  hgvsp: ENST00000400525.1:c.501G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000474308
  gene symbol: TXNRD2
  hgvsc: ENST00000474308.1:n.517G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439314
  ensembl transcript: ENST00000535882
  gene symbol: TXNRD2
  hgvsc: ENST00000535882.1:c.567G>A
  hgvsp: ENST00000535882.1:c.567G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000491939
  gene symbol: TXNRD2
  hgvsc: ENST00000491939.1:n.560G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383363
  ensembl transcript: ENST00000400519
  gene symbol: TXNRD2
  hgvsc: ENST00000400519.1:c.567G>A
  hgvsp: ENST00000400519.1:c.567G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383365
  ensembl transcript: ENST00000400521
  gene symbol: TXNRD2
  hgvsc: ENST00000400521.1:c.570G>A
  hgvsp: ENST00000400521.1:c.570G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000334451
  ensembl transcript: ENST00000334363
  gene symbol: TXNRD2
  hgvsc: ENST00000334363.9:c.570G>A
  hgvsp: ENST00000334363.9:c.570G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383362
  ensembl transcript: ENST00000400518
  gene symbol: TXNRD2
  hgvsc: ENST00000400518.1:c.480G>A
  hgvsp: ENST00000400518.1:c.480G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000494454
  gene symbol: TXNRD2
  hgvsc: ENST00000494454.1:n.644G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000484672
  gene symbol: TXNRD2
  hgvsc: ENST00000484672.1:n.200G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000496729
  gene symbol: TXNRD2
  hgvsc: ENST00000496729.1:n.575G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439570
  ensembl transcript: ENST00000542719
  gene symbol: TXNRD2
  hgvsc: ENST00000542719.1:c.480G>A
  hgvsp: ENST00000542719.1:c.480G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000471835
  gene symbol: TXNRD2
  hgvsc: ENST00000471835.1:n.115G>A
  variant of: http://identifiers.org/hgnc/18155
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2868
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3873
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10150
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Gly190Gly
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

22-19902766-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19902766
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 19902766
    reference: chr 22
allele count: 1
allele frequency: 8.851907586084802e-6
allele num: 112970
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383363
  ensembl transcript: ENST00000400519
  gene symbol: TXNRD2
  hgvsc: ENST00000400519.1:c.559A>C
  hgvsp: ENSP00000383363.1:p.Thr187Pro
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439570
  ensembl transcript: ENST00000542719
  gene symbol: TXNRD2
  hgvsc: ENST00000542719.1:c.472A>C
  hgvsp: ENSP00000439570.1:p.Thr158Pro
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000334451
  ensembl transcript: ENST00000334363
  gene symbol: TXNRD2
  hgvsc: ENST00000334363.9:c.562A>C
  hgvsp: ENSP00000334451.9:p.Thr188Pro
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000474308
  gene symbol: TXNRD2
  hgvsc: ENST00000474308.1:n.509A>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383365
  ensembl transcript: ENST00000400521
  gene symbol: TXNRD2
  hgvsc: ENST00000400521.1:c.562A>C
  hgvsp: ENSP00000383365.1:p.Thr188Pro
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000484672
  gene symbol: TXNRD2
  hgvsc: ENST00000484672.1:n.192A>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000471835
  gene symbol: TXNRD2
  hgvsc: ENST00000471835.1:n.107A>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383369
  ensembl transcript: ENST00000400525
  gene symbol: TXNRD2
  hgvsc: ENST00000400525.1:c.493A>C
  hgvsp: ENSP00000383369.2:p.Thr165Pro
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439314
  ensembl transcript: ENST00000535882
  gene symbol: TXNRD2
  hgvsc: ENST00000535882.1:c.559A>C
  hgvsp: ENSP00000439314.1:p.Thr187Pro
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383362
  ensembl transcript: ENST00000400518
  gene symbol: TXNRD2
  hgvsc: ENST00000400518.1:c.472A>C
  hgvsp: ENSP00000383362.1:p.Thr158Pro
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000496729
  gene symbol: TXNRD2
  hgvsc: ENST00000496729.1:n.567A>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000491939
  gene symbol: TXNRD2
  hgvsc: ENST00000491939.1:n.552A>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000494454
  gene symbol: TXNRD2
  hgvsc: ENST00000494454.1:n.636A>C
  variant of: http://identifiers.org/hgnc/18155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10411
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3811
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2650
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32603
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr188Pro
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

22-19902768-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19902768
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 19902768
    reference: chr 22
allele count: 4
allele frequency: 3.542330853701736e-5
allele num: 112920
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000334451
  ensembl transcript: ENST00000334363
  gene symbol: TXNRD2
  hgvsc: ENST00000334363.9:c.560C>T
  hgvsp: ENSP00000334451.9:p.Ala187Val
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383362
  ensembl transcript: ENST00000400518
  gene symbol: TXNRD2
  hgvsc: ENST00000400518.1:c.470C>T
  hgvsp: ENSP00000383362.1:p.Ala157Val
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383365
  ensembl transcript: ENST00000400521
  gene symbol: TXNRD2
  hgvsc: ENST00000400521.1:c.560C>T
  hgvsp: ENSP00000383365.1:p.Ala187Val
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000496729
  gene symbol: TXNRD2
  hgvsc: ENST00000496729.1:n.565C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000491939
  gene symbol: TXNRD2
  hgvsc: ENST00000491939.1:n.550C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000471835
  gene symbol: TXNRD2
  hgvsc: ENST00000471835.1:n.105C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439570
  ensembl transcript: ENST00000542719
  gene symbol: TXNRD2
  hgvsc: ENST00000542719.1:c.470C>T
  hgvsp: ENSP00000439570.1:p.Ala157Val
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439314
  ensembl transcript: ENST00000535882
  gene symbol: TXNRD2
  hgvsc: ENST00000535882.1:c.557C>T
  hgvsp: ENSP00000439314.1:p.Ala186Val
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383369
  ensembl transcript: ENST00000400525
  gene symbol: TXNRD2
  hgvsc: ENST00000400525.1:c.491C>T
  hgvsp: ENSP00000383369.2:p.Ala164Val
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383363
  ensembl transcript: ENST00000400519
  gene symbol: TXNRD2
  hgvsc: ENST00000400519.1:c.557C>T
  hgvsp: ENSP00000383363.1:p.Ala186Val
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000484672
  gene symbol: TXNRD2
  hgvsc: ENST00000484672.1:n.190C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000494454
  gene symbol: TXNRD2
  hgvsc: ENST00000494454.1:n.634C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000474308
  gene symbol: TXNRD2
  hgvsc: ENST00000474308.1:n.507C>T
  variant of: http://identifiers.org/hgnc/18155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2679
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10464
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3854
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32478
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala187Val
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/22-19902770-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19902770
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 19902770
    reference: chr 22
allele count: 1
allele frequency: 8.870595749210517e-6
allele num: 112732
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383369
  ensembl transcript: ENST00000400525
  gene symbol: TXNRD2
  hgvsc: ENST00000400525.1:c.489T>G
  hgvsp: ENSP00000383369.2:p.Ile163Met
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439314
  ensembl transcript: ENST00000535882
  gene symbol: TXNRD2
  hgvsc: ENST00000535882.1:c.555T>G
  hgvsp: ENSP00000439314.1:p.Ile185Met
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383363
  ensembl transcript: ENST00000400519
  gene symbol: TXNRD2
  hgvsc: ENST00000400519.1:c.555T>G
  hgvsp: ENSP00000383363.1:p.Ile185Met
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000334451
  ensembl transcript: ENST00000334363
  gene symbol: TXNRD2
  hgvsc: ENST00000334363.9:c.558T>G
  hgvsp: ENSP00000334451.9:p.Ile186Met
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439570
  ensembl transcript: ENST00000542719
  gene symbol: TXNRD2
  hgvsc: ENST00000542719.1:c.468T>G
  hgvsp: ENSP00000439570.1:p.Ile156Met
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000496729
  gene symbol: TXNRD2
  hgvsc: ENST00000496729.1:n.563T>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383365
  ensembl transcript: ENST00000400521
  gene symbol: TXNRD2
  hgvsc: ENST00000400521.1:c.558T>G
  hgvsp: ENSP00000383365.1:p.Ile186Met
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000474308
  gene symbol: TXNRD2
  hgvsc: ENST00000474308.1:n.505T>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000471835
  gene symbol: TXNRD2
  hgvsc: ENST00000471835.1:n.103T>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383362
  ensembl transcript: ENST00000400518
  gene symbol: TXNRD2
  hgvsc: ENST00000400518.1:c.468T>G
  hgvsp: ENSP00000383362.1:p.Ile156Met
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000494454
  gene symbol: TXNRD2
  hgvsc: ENST00000494454.1:n.632T>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000491939
  gene symbol: TXNRD2
  hgvsc: ENST00000491939.1:n.548T>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000484672
  gene symbol: TXNRD2
  hgvsc: ENST00000484672.1:n.188T>G
  variant of: http://identifiers.org/hgnc/18155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10533
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2227
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2767
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32253
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3942
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile186Met
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: Latino
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

22-19902778-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19902778
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 19902778
    reference: chr 22
allele count: 2
allele frequency: 1.792243171553516e-5
allele num: 111592
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000496729
  gene symbol: TXNRD2
  hgvsc: ENST00000496729.1:n.555A>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000334451
  ensembl transcript: ENST00000334363
  gene symbol: TXNRD2
  hgvsc: ENST00000334363.9:c.550A>C
  hgvsp: ENSP00000334451.9:p.Ile184Leu
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439570
  ensembl transcript: ENST00000542719
  gene symbol: TXNRD2
  hgvsc: ENST00000542719.1:c.460A>C
  hgvsp: ENSP00000439570.1:p.Ile154Leu
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439314
  ensembl transcript: ENST00000535882
  gene symbol: TXNRD2
  hgvsc: ENST00000535882.1:c.547A>C
  hgvsp: ENSP00000439314.1:p.Ile183Leu
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000494454
  gene symbol: TXNRD2
  hgvsc: ENST00000494454.1:n.624A>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000491939
  gene symbol: TXNRD2
  hgvsc: ENST00000491939.1:n.540A>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383365
  ensembl transcript: ENST00000400521
  gene symbol: TXNRD2
  hgvsc: ENST00000400521.1:c.550A>C
  hgvsp: ENSP00000383365.1:p.Ile184Leu
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383363
  ensembl transcript: ENST00000400519
  gene symbol: TXNRD2
  hgvsc: ENST00000400519.1:c.547A>C
  hgvsp: ENSP00000383363.1:p.Ile183Leu
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383362
  ensembl transcript: ENST00000400518
  gene symbol: TXNRD2
  hgvsc: ENST00000400518.1:c.460A>C
  hgvsp: ENSP00000383362.1:p.Ile154Leu
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383369
  ensembl transcript: ENST00000400525
  gene symbol: TXNRD2
  hgvsc: ENST00000400525.1:c.481A>C
  hgvsp: ENSP00000383369.2:p.Ile161Leu
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000471835
  gene symbol: TXNRD2
  hgvsc: ENST00000471835.1:n.95A>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000484672
  gene symbol: TXNRD2
  hgvsc: ENST00000484672.1:n.180A>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000474308
  gene symbol: TXNRD2
  hgvsc: ENST00000474308.1:n.497A>C
  variant of: http://identifiers.org/hgnc/18155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30387
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3754
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4504
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2227
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10632
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ile184Leu
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: BaseQRankSum

22-19902784-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19902784
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 19902784
    reference: chr 22
allele count: 1
allele frequency: 9.049609961810647e-6
allele num: 110502
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000334451
  ensembl transcript: ENST00000334363
  gene symbol: TXNRD2
  hgvsc: ENST00000334363.9:c.544G>A
  hgvsp: ENSP00000334451.9:p.Asp182Asn
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383369
  ensembl transcript: ENST00000400525
  gene symbol: TXNRD2
  hgvsc: ENST00000400525.1:c.475G>A
  hgvsp: ENSP00000383369.2:p.Asp159Asn
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000474308
  gene symbol: TXNRD2
  hgvsc: ENST00000474308.1:n.491G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439314
  ensembl transcript: ENST00000535882
  gene symbol: TXNRD2
  hgvsc: ENST00000535882.1:c.541G>A
  hgvsp: ENSP00000439314.1:p.Asp181Asn
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000484672
  gene symbol: TXNRD2
  hgvsc: ENST00000484672.1:n.174G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000471835
  gene symbol: TXNRD2
  hgvsc: ENST00000471835.1:n.89G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000494454
  gene symbol: TXNRD2
  hgvsc: ENST00000494454.1:n.618G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383363
  ensembl transcript: ENST00000400519
  gene symbol: TXNRD2
  hgvsc: ENST00000400519.1:c.541G>A
  hgvsp: ENSP00000383363.1:p.Asp181Asn
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383362
  ensembl transcript: ENST00000400518
  gene symbol: TXNRD2
  hgvsc: ENST00000400518.1:c.454G>A
  hgvsp: ENSP00000383362.1:p.Asp152Asn
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383365
  ensembl transcript: ENST00000400521
  gene symbol: TXNRD2
  hgvsc: ENST00000400521.1:c.544G>A
  hgvsp: ENSP00000383365.1:p.Asp182Asn
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439570
  ensembl transcript: ENST00000542719
  gene symbol: TXNRD2
  hgvsc: ENST00000542719.1:c.454G>A
  hgvsp: ENSP00000439570.1:p.Asp152Asn
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000491939
  gene symbol: TXNRD2
  hgvsc: ENST00000491939.1:n.534G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000496729
  gene symbol: TXNRD2
  hgvsc: ENST00000496729.1:n.549G>A
  variant of: http://identifiers.org/hgnc/18155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10699
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4950
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4490
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28926
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp182Asn
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

22-19902785-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19902785
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 19902785
    reference: chr 22
allele count: 3
allele frequency: 2.713949701465533e-5
allele num: 110540
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383363
  ensembl transcript: ENST00000400519
  gene symbol: TXNRD2
  hgvsc: ENST00000400519.1:c.540C>T
  hgvsp: ENST00000400519.1:c.540C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000491939
  gene symbol: TXNRD2
  hgvsc: ENST00000491939.1:n.533C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383362
  ensembl transcript: ENST00000400518
  gene symbol: TXNRD2
  hgvsc: ENST00000400518.1:c.453C>T
  hgvsp: ENST00000400518.1:c.453C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000496729
  gene symbol: TXNRD2
  hgvsc: ENST00000496729.1:n.548C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000474308
  gene symbol: TXNRD2
  hgvsc: ENST00000474308.1:n.490C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383369
  ensembl transcript: ENST00000400525
  gene symbol: TXNRD2
  hgvsc: ENST00000400525.1:c.474C>T
  hgvsp: ENST00000400525.1:c.474C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439570
  ensembl transcript: ENST00000542719
  gene symbol: TXNRD2
  hgvsc: ENST00000542719.1:c.453C>T
  hgvsp: ENST00000542719.1:c.453C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000334451
  ensembl transcript: ENST00000334363
  gene symbol: TXNRD2
  hgvsc: ENST00000334363.9:c.543C>T
  hgvsp: ENST00000334363.9:c.543C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439314
  ensembl transcript: ENST00000535882
  gene symbol: TXNRD2
  hgvsc: ENST00000535882.1:c.540C>T
  hgvsp: ENST00000535882.1:c.540C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000471835
  gene symbol: TXNRD2
  hgvsc: ENST00000471835.1:n.88C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383365
  ensembl transcript: ENST00000400521
  gene symbol: TXNRD2
  hgvsc: ENST00000400521.1:c.543C>T
  hgvsp: ENST00000400521.1:c.543C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000494454
  gene symbol: TXNRD2
  hgvsc: ENST00000494454.1:n.617C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000484672
  gene symbol: TXNRD2
  hgvsc: ENST00000484672.1:n.173C>T
  variant of: http://identifiers.org/hgnc/18155
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28975
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4504
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4977
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10737
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala181Ala
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD

22-19902789-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19902789
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 19902789
    reference: chr 22
allele count: 1
allele frequency: 9.115105552922302e-6
allele num: 109708
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000334451
  ensembl transcript: ENST00000334363
  gene symbol: TXNRD2
  hgvsc: ENST00000334363.9:c.539C>T
  hgvsp: ENSP00000334451.9:p.Ser180Leu
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439570
  ensembl transcript: ENST00000542719
  gene symbol: TXNRD2
  hgvsc: ENST00000542719.1:c.449C>T
  hgvsp: ENSP00000439570.1:p.Ser150Leu
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000484672
  gene symbol: TXNRD2
  hgvsc: ENST00000484672.1:n.169C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383369
  ensembl transcript: ENST00000400525
  gene symbol: TXNRD2
  hgvsc: ENST00000400525.1:c.470C>T
  hgvsp: ENSP00000383369.2:p.Ser157Leu
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439314
  ensembl transcript: ENST00000535882
  gene symbol: TXNRD2
  hgvsc: ENST00000535882.1:c.536C>T
  hgvsp: ENSP00000439314.1:p.Ser179Leu
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383363
  ensembl transcript: ENST00000400519
  gene symbol: TXNRD2
  hgvsc: ENST00000400519.1:c.536C>T
  hgvsp: ENSP00000383363.1:p.Ser179Leu
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000474308
  gene symbol: TXNRD2
  hgvsc: ENST00000474308.1:n.486C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000496729
  gene symbol: TXNRD2
  hgvsc: ENST00000496729.1:n.544C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000494454
  gene symbol: TXNRD2
  hgvsc: ENST00000494454.1:n.613C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383365
  ensembl transcript: ENST00000400521
  gene symbol: TXNRD2
  hgvsc: ENST00000400521.1:c.539C>T
  hgvsp: ENSP00000383365.1:p.Ser180Leu
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000491939
  gene symbol: TXNRD2
  hgvsc: ENST00000491939.1:n.529C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000471835
  gene symbol: TXNRD2
  hgvsc: ENST00000471835.1:n.84C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383362
  ensembl transcript: ENST00000400518
  gene symbol: TXNRD2
  hgvsc: ENST00000400518.1:c.449C>T
  hgvsp: ENSP00000383362.1:p.Ser150Leu
  variant of: http://identifiers.org/hgnc/18155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10650
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1405
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5384
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5272
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27914
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser180Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/22-19902794-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19902794
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 19902794
    reference: chr 22
allele count: 1
allele frequency: 9.237363287023353e-6
allele num: 108256
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000491939
  gene symbol: TXNRD2
  hgvsc: ENST00000491939.1:n.524G>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383369
  ensembl transcript: ENST00000400525
  gene symbol: TXNRD2
  hgvsc: ENST00000400525.1:c.465G>T
  hgvsp: ENST00000400525.1:c.465G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383365
  ensembl transcript: ENST00000400521
  gene symbol: TXNRD2
  hgvsc: ENST00000400521.1:c.534G>T
  hgvsp: ENST00000400521.1:c.534G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000484672
  gene symbol: TXNRD2
  hgvsc: ENST00000484672.1:n.164G>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000496729
  gene symbol: TXNRD2
  hgvsc: ENST00000496729.1:n.539G>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439314
  ensembl transcript: ENST00000535882
  gene symbol: TXNRD2
  hgvsc: ENST00000535882.1:c.531G>T
  hgvsp: ENST00000535882.1:c.531G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383363
  ensembl transcript: ENST00000400519
  gene symbol: TXNRD2
  hgvsc: ENST00000400519.1:c.531G>T
  hgvsp: ENST00000400519.1:c.531G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000334451
  ensembl transcript: ENST00000334363
  gene symbol: TXNRD2
  hgvsc: ENST00000334363.9:c.534G>T
  hgvsp: ENST00000334363.9:c.534G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000471835
  gene symbol: TXNRD2
  hgvsc: ENST00000471835.1:n.79G>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439570
  ensembl transcript: ENST00000542719
  gene symbol: TXNRD2
  hgvsc: ENST00000542719.1:c.444G>T
  hgvsp: ENST00000542719.1:c.444G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383362
  ensembl transcript: ENST00000400518
  gene symbol: TXNRD2
  hgvsc: ENST00000400518.1:c.444G>T
  hgvsp: ENST00000400518.1:c.444G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000494454
  gene symbol: TXNRD2
  hgvsc: ENST00000494454.1:n.608G>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000474308
  gene symbol: TXNRD2
  hgvsc: ENST00000474308.1:n.481G>T
  variant of: http://identifiers.org/hgnc/18155
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6038
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26001
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu178Leu
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: DP

22-19902799-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19902799
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 19902799
    reference: chr 22
allele count: 1
allele frequency: 9.37681675824691e-6
allele num: 106646
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000491939
  gene symbol: TXNRD2
  hgvsc: ENST00000491939.1:n.519A>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000471835
  gene symbol: TXNRD2
  hgvsc: ENST00000471835.1:n.74A>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383369
  ensembl transcript: ENST00000400525
  gene symbol: TXNRD2
  hgvsc: ENST00000400525.1:c.460A>G
  hgvsp: ENSP00000383369.2:p.Ile154Val
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000484672
  gene symbol: TXNRD2
  hgvsc: ENST00000484672.1:n.159A>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383362
  ensembl transcript: ENST00000400518
  gene symbol: TXNRD2
  hgvsc: ENST00000400518.1:c.439A>G
  hgvsp: ENSP00000383362.1:p.Ile147Val
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383365
  ensembl transcript: ENST00000400521
  gene symbol: TXNRD2
  hgvsc: ENST00000400521.1:c.529A>G
  hgvsp: ENSP00000383365.1:p.Ile177Val
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000474308
  gene symbol: TXNRD2
  hgvsc: ENST00000474308.1:n.476A>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000496729
  gene symbol: TXNRD2
  hgvsc: ENST00000496729.1:n.534A>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000334451
  ensembl transcript: ENST00000334363
  gene symbol: TXNRD2
  hgvsc: ENST00000334363.9:c.529A>G
  hgvsp: ENSP00000334451.9:p.Ile177Val
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439314
  ensembl transcript: ENST00000535882
  gene symbol: TXNRD2
  hgvsc: ENST00000535882.1:c.526A>G
  hgvsp: ENSP00000439314.1:p.Ile176Val
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000494454
  gene symbol: TXNRD2
  hgvsc: ENST00000494454.1:n.603A>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383363
  ensembl transcript: ENST00000400519
  gene symbol: TXNRD2
  hgvsc: ENST00000400519.1:c.526A>G
  hgvsp: ENSP00000383363.1:p.Ile176Val
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439570
  ensembl transcript: ENST00000542719
  gene symbol: TXNRD2
  hgvsc: ENST00000542719.1:c.439A>G
  hgvsp: ENSP00000439570.1:p.Ile147Val
  variant of: http://identifiers.org/hgnc/18155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6852
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8481
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9965
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1517
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2227
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile177Val
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: Latino
reference allele: T
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQ

22-19902804-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19902804
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 19902804
    reference: chr 22
allele count: 2
allele frequency: 1.912521276799204e-5
allele num: 104574
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000496729
  gene symbol: TXNRD2
  hgvsc: ENST00000496729.1:n.534-5C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000484672
  gene symbol: TXNRD2
  hgvsc: ENST00000484672.1:n.159-5C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383369
  ensembl transcript: ENST00000400525
  gene symbol: TXNRD2
  hgvsc: ENST00000400525.1:c.460-5C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000474308
  gene symbol: TXNRD2
  hgvsc: ENST00000474308.1:n.476-5C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439570
  ensembl transcript: ENST00000542719
  gene symbol: TXNRD2
  hgvsc: ENST00000542719.1:c.439-5C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000334451
  ensembl transcript: ENST00000334363
  gene symbol: TXNRD2
  hgvsc: ENST00000334363.9:c.529-5C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000494454
  gene symbol: TXNRD2
  hgvsc: ENST00000494454.1:n.603-5C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383365
  ensembl transcript: ENST00000400521
  gene symbol: TXNRD2
  hgvsc: ENST00000400521.1:c.529-5C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000471835
  gene symbol: TXNRD2
  hgvsc: ENST00000471835.1:n.74-5C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383362
  ensembl transcript: ENST00000400518
  gene symbol: TXNRD2
  hgvsc: ENST00000400518.1:c.439-5C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383363
  ensembl transcript: ENST00000400519
  gene symbol: TXNRD2
  hgvsc: ENST00000400519.1:c.526-5C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439314
  ensembl transcript: ENST00000535882
  gene symbol: TXNRD2
  hgvsc: ENST00000535882.1:c.526-5C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000491939
  gene symbol: TXNRD2
  hgvsc: ENST00000491939.1:n.519-5C>T
  variant of: http://identifiers.org/hgnc/18155
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20042
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1986
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9342
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1302
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7749
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.529-5C>T
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum

22-19902805-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19902805
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 19902805
    reference: chr 22
allele count: 168
allele frequency: 1.637714218868807e-3
allele num: 102582
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383369
  ensembl transcript: ENST00000400525
  gene symbol: TXNRD2
  hgvsc: ENST00000400525.1:c.460-6C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383365
  ensembl transcript: ENST00000400521
  gene symbol: TXNRD2
  hgvsc: ENST00000400521.1:c.529-6C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000491939
  gene symbol: TXNRD2
  hgvsc: ENST00000491939.1:n.519-6C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000471835
  gene symbol: TXNRD2
  hgvsc: ENST00000471835.1:n.74-6C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000484672
  gene symbol: TXNRD2
  hgvsc: ENST00000484672.1:n.159-6C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383363
  ensembl transcript: ENST00000400519
  gene symbol: TXNRD2
  hgvsc: ENST00000400519.1:c.526-6C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000496729
  gene symbol: TXNRD2
  hgvsc: ENST00000496729.1:n.534-6C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439314
  ensembl transcript: ENST00000535882
  gene symbol: TXNRD2
  hgvsc: ENST00000535882.1:c.526-6C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439570
  ensembl transcript: ENST00000542719
  gene symbol: TXNRD2
  hgvsc: ENST00000542719.1:c.439-6C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383362
  ensembl transcript: ENST00000400518
  gene symbol: TXNRD2
  hgvsc: ENST00000400518.1:c.439-6C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000474308
  gene symbol: TXNRD2
  hgvsc: ENST00000474308.1:n.476-6C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000494454
  gene symbol: TXNRD2
  hgvsc: ENST00000494454.1:n.603-6C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000334451
  ensembl transcript: ENST00000334363
  gene symbol: TXNRD2
  hgvsc: ENST00000334363.9:c.529-6C>T
  variant of: http://identifiers.org/hgnc/18155
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16211
  bin: 2.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 3.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 3.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14039
  bin: 1.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 8538
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 8468
  bin: 2.75e1
  variant carriers: 24
genotype quality: GenotypeQuality
hgvs: c.529-6C>T
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ClippingRankSum

22-19902807-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19902807
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 19902807
    reference: chr 22
allele count: 2
allele frequency: 1.952667343591346e-5
allele num: 102424
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383363
  ensembl transcript: ENST00000400519
  gene symbol: TXNRD2
  hgvsc: ENST00000400519.1:c.526-8C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000334451
  ensembl transcript: ENST00000334363
  gene symbol: TXNRD2
  hgvsc: ENST00000334363.9:c.529-8C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000474308
  gene symbol: TXNRD2
  hgvsc: ENST00000474308.1:n.476-8C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000484672
  gene symbol: TXNRD2
  hgvsc: ENST00000484672.1:n.159-8C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383362
  ensembl transcript: ENST00000400518
  gene symbol: TXNRD2
  hgvsc: ENST00000400518.1:c.439-8C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000471835
  gene symbol: TXNRD2
  hgvsc: ENST00000471835.1:n.74-8C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383369
  ensembl transcript: ENST00000400525
  gene symbol: TXNRD2
  hgvsc: ENST00000400525.1:c.460-8C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000494454
  gene symbol: TXNRD2
  hgvsc: ENST00000494454.1:n.603-8C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439570
  ensembl transcript: ENST00000542719
  gene symbol: TXNRD2
  hgvsc: ENST00000542719.1:c.439-8C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383365
  ensembl transcript: ENST00000400521
  gene symbol: TXNRD2
  hgvsc: ENST00000400521.1:c.529-8C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439314
  ensembl transcript: ENST00000535882
  gene symbol: TXNRD2
  hgvsc: ENST00000535882.1:c.526-8C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000496729
  gene symbol: TXNRD2
  hgvsc: ENST00000496729.1:n.534-8C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000491939
  gene symbol: TXNRD2
  hgvsc: ENST00000491939.1:n.519-8C>T
  variant of: http://identifiers.org/hgnc/18155
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8599
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14090
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1252
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.529-8C>T
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD

22-19902807-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19902807
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 19902807
    reference: chr 22
allele count: 3
allele frequency: 2.929001015387019e-5
allele num: 102424
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000484672
  gene symbol: TXNRD2
  hgvsc: ENST00000484672.1:n.159-8C>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000334451
  ensembl transcript: ENST00000334363
  gene symbol: TXNRD2
  hgvsc: ENST00000334363.9:c.529-8C>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000474308
  gene symbol: TXNRD2
  hgvsc: ENST00000474308.1:n.476-8C>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000496729
  gene symbol: TXNRD2
  hgvsc: ENST00000496729.1:n.534-8C>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383369
  ensembl transcript: ENST00000400525
  gene symbol: TXNRD2
  hgvsc: ENST00000400525.1:c.460-8C>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383362
  ensembl transcript: ENST00000400518
  gene symbol: TXNRD2
  hgvsc: ENST00000400518.1:c.439-8C>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439314
  ensembl transcript: ENST00000535882
  gene symbol: TXNRD2
  hgvsc: ENST00000535882.1:c.526-8C>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000471835
  gene symbol: TXNRD2
  hgvsc: ENST00000471835.1:n.74-8C>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383365
  ensembl transcript: ENST00000400521
  gene symbol: TXNRD2
  hgvsc: ENST00000400521.1:c.529-8C>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439570
  ensembl transcript: ENST00000542719
  gene symbol: TXNRD2
  hgvsc: ENST00000542719.1:c.439-8C>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000494454
  gene symbol: TXNRD2
  hgvsc: ENST00000494454.1:n.603-8C>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000491939
  gene symbol: TXNRD2
  hgvsc: ENST00000491939.1:n.519-8C>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383363
  ensembl transcript: ENST00000400519
  gene symbol: TXNRD2
  hgvsc: ENST00000400519.1:c.526-8C>A
  variant of: http://identifiers.org/hgnc/18155
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2752
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14090
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16258
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2240
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1252
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8599
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.529-8C>A
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff

22-19902808-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19902808
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 19902808
    reference: chr 22
allele count: 1
allele frequency: 9.756859071927565e-6
allele num: 102492
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000496729
  gene symbol: TXNRD2
  hgvsc: ENST00000496729.1:n.534-9T>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383362
  ensembl transcript: ENST00000400518
  gene symbol: TXNRD2
  hgvsc: ENST00000400518.1:c.439-9T>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383365
  ensembl transcript: ENST00000400521
  gene symbol: TXNRD2
  hgvsc: ENST00000400521.1:c.529-9T>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000491939
  gene symbol: TXNRD2
  hgvsc: ENST00000491939.1:n.519-9T>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439314
  ensembl transcript: ENST00000535882
  gene symbol: TXNRD2
  hgvsc: ENST00000535882.1:c.526-9T>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000484672
  gene symbol: TXNRD2
  hgvsc: ENST00000484672.1:n.159-9T>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383363
  ensembl transcript: ENST00000400519
  gene symbol: TXNRD2
  hgvsc: ENST00000400519.1:c.526-9T>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383369
  ensembl transcript: ENST00000400525
  gene symbol: TXNRD2
  hgvsc: ENST00000400525.1:c.460-9T>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000471835
  gene symbol: TXNRD2
  hgvsc: ENST00000471835.1:n.74-9T>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439570
  ensembl transcript: ENST00000542719
  gene symbol: TXNRD2
  hgvsc: ENST00000542719.1:c.439-9T>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000494454
  gene symbol: TXNRD2
  hgvsc: ENST00000494454.1:n.603-9T>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000474308
  gene symbol: TXNRD2
  hgvsc: ENST00000474308.1:n.476-9T>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000334451
  ensembl transcript: ENST00000334363
  gene symbol: TXNRD2
  hgvsc: ENST00000334363.9:c.529-9T>C
  variant of: http://identifiers.org/hgnc/18155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16328
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8443
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2694
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8645
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14107
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

22-19902821-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19902821
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 19902821
    reference: chr 22
allele count: 1
allele frequency: 1.022327635560644e-5
allele num: 97816
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439570
  ensembl transcript: ENST00000542719
  gene symbol: TXNRD2
  hgvsc: ENST00000542719.1:c.439-22G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000491939
  gene symbol: TXNRD2
  hgvsc: ENST00000491939.1:n.519-22G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000471835
  gene symbol: TXNRD2
  hgvsc: ENST00000471835.1:n.74-22G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000484672
  gene symbol: TXNRD2
  hgvsc: ENST00000484672.1:n.159-22G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383362
  ensembl transcript: ENST00000400518
  gene symbol: TXNRD2
  hgvsc: ENST00000400518.1:c.439-22G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383363
  ensembl transcript: ENST00000400519
  gene symbol: TXNRD2
  hgvsc: ENST00000400519.1:c.526-22G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000494454
  gene symbol: TXNRD2
  hgvsc: ENST00000494454.1:n.603-22G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383369
  ensembl transcript: ENST00000400525
  gene symbol: TXNRD2
  hgvsc: ENST00000400525.1:c.460-22G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439314
  ensembl transcript: ENST00000535882
  gene symbol: TXNRD2
  hgvsc: ENST00000535882.1:c.526-22G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000474308
  gene symbol: TXNRD2
  hgvsc: ENST00000474308.1:n.476-22G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383365
  ensembl transcript: ENST00000400521
  gene symbol: TXNRD2
  hgvsc: ENST00000400521.1:c.529-22G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000334451
  ensembl transcript: ENST00000334363
  gene symbol: TXNRD2
  hgvsc: ENST00000334363.9:c.529-22G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000496729
  gene symbol: TXNRD2
  hgvsc: ENST00000496729.1:n.534-22G>A
  variant of: http://identifiers.org/hgnc/18155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8434
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2240
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20903
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10062
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5509
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4967
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

22-19902822-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19902822
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 19902822
    reference: chr 22
allele count: 4
allele frequency: 4.109392015451314e-5
allele num: 97338
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000496729
  gene symbol: TXNRD2
  hgvsc: ENST00000496729.1:n.534-23C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000494454
  gene symbol: TXNRD2
  hgvsc: ENST00000494454.1:n.603-23C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000484672
  gene symbol: TXNRD2
  hgvsc: ENST00000484672.1:n.159-23C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000471835
  gene symbol: TXNRD2
  hgvsc: ENST00000471835.1:n.74-23C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439570
  ensembl transcript: ENST00000542719
  gene symbol: TXNRD2
  hgvsc: ENST00000542719.1:c.439-23C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000334451
  ensembl transcript: ENST00000334363
  gene symbol: TXNRD2
  hgvsc: ENST00000334363.9:c.529-23C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000491939
  gene symbol: TXNRD2
  hgvsc: ENST00000491939.1:n.519-23C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383369
  ensembl transcript: ENST00000400525
  gene symbol: TXNRD2
  hgvsc: ENST00000400525.1:c.460-23C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000474308
  gene symbol: TXNRD2
  hgvsc: ENST00000474308.1:n.476-23C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383363
  ensembl transcript: ENST00000400519
  gene symbol: TXNRD2
  hgvsc: ENST00000400519.1:c.526-23C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383365
  ensembl transcript: ENST00000400521
  gene symbol: TXNRD2
  hgvsc: ENST00000400521.1:c.529-23C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383362
  ensembl transcript: ENST00000400518
  gene symbol: TXNRD2
  hgvsc: ENST00000400518.1:c.439-23C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439314
  ensembl transcript: ENST00000535882
  gene symbol: TXNRD2
  hgvsc: ENST00000535882.1:c.526-23C>T
  variant of: http://identifiers.org/hgnc/18155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2240
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21213
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5717
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10209
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7937
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4792
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: DP

22-19902825-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19902825
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 19902825
    reference: chr 22
allele count: 2
allele frequency: 2.104244260673779e-5
allele num: 95046
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439570
  ensembl transcript: ENST00000542719
  gene symbol: TXNRD2
  hgvsc: ENST00000542719.1:c.439-26C>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383363
  ensembl transcript: ENST00000400519
  gene symbol: TXNRD2
  hgvsc: ENST00000400519.1:c.526-26C>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000484672
  gene symbol: TXNRD2
  hgvsc: ENST00000484672.1:n.159-26C>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000491939
  gene symbol: TXNRD2
  hgvsc: ENST00000491939.1:n.519-26C>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000496729
  gene symbol: TXNRD2
  hgvsc: ENST00000496729.1:n.534-26C>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383369
  ensembl transcript: ENST00000400525
  gene symbol: TXNRD2
  hgvsc: ENST00000400525.1:c.460-26C>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383362
  ensembl transcript: ENST00000400518
  gene symbol: TXNRD2
  hgvsc: ENST00000400518.1:c.439-26C>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383365
  ensembl transcript: ENST00000400521
  gene symbol: TXNRD2
  hgvsc: ENST00000400521.1:c.529-26C>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439314
  ensembl transcript: ENST00000535882
  gene symbol: TXNRD2
  hgvsc: ENST00000535882.1:c.526-26C>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000471835
  gene symbol: TXNRD2
  hgvsc: ENST00000471835.1:n.74-26C>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000494454
  gene symbol: TXNRD2
  hgvsc: ENST00000494454.1:n.603-26C>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000334451
  ensembl transcript: ENST00000334363
  gene symbol: TXNRD2
  hgvsc: ENST00000334363.9:c.529-26C>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000474308
  gene symbol: TXNRD2
  hgvsc: ENST00000474308.1:n.476-26C>A
  variant of: http://identifiers.org/hgnc/18155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10859
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3475
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2240
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22234
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7342
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1531
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: Other
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum

22-19902825-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19902825
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 19902825
    reference: chr 22
allele count: 2
allele frequency: 2.104244260673779e-5
allele num: 95046
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383363
  ensembl transcript: ENST00000400519
  gene symbol: TXNRD2
  hgvsc: ENST00000400519.1:c.526-26C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000484672
  gene symbol: TXNRD2
  hgvsc: ENST00000484672.1:n.159-26C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000474308
  gene symbol: TXNRD2
  hgvsc: ENST00000474308.1:n.476-26C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383362
  ensembl transcript: ENST00000400518
  gene symbol: TXNRD2
  hgvsc: ENST00000400518.1:c.439-26C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383365
  ensembl transcript: ENST00000400521
  gene symbol: TXNRD2
  hgvsc: ENST00000400521.1:c.529-26C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383369
  ensembl transcript: ENST00000400525
  gene symbol: TXNRD2
  hgvsc: ENST00000400525.1:c.460-26C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439570
  ensembl transcript: ENST00000542719
  gene symbol: TXNRD2
  hgvsc: ENST00000542719.1:c.439-26C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000494454
  gene symbol: TXNRD2
  hgvsc: ENST00000494454.1:n.603-26C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000471835
  gene symbol: TXNRD2
  hgvsc: ENST00000471835.1:n.74-26C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000491939
  gene symbol: TXNRD2
  hgvsc: ENST00000491939.1:n.519-26C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000334451
  ensembl transcript: ENST00000334363
  gene symbol: TXNRD2
  hgvsc: ENST00000334363.9:c.529-26C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000496729
  gene symbol: TXNRD2
  hgvsc: ENST00000496729.1:n.534-26C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439314
  ensembl transcript: ENST00000535882
  gene symbol: TXNRD2
  hgvsc: ENST00000535882.1:c.526-26C>T
  variant of: http://identifiers.org/hgnc/18155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22234
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1531
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7342
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10859
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5713
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3475
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum

22-19902826-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19902826
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 19902826
    reference: chr 22
allele count: 1
allele frequency: 1.051480484522207e-5
allele num: 95104
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439570
  ensembl transcript: ENST00000542719
  gene symbol: TXNRD2
  hgvsc: ENST00000542719.1:c.439-27C>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000474308
  gene symbol: TXNRD2
  hgvsc: ENST00000474308.1:n.476-27C>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439314
  ensembl transcript: ENST00000535882
  gene symbol: TXNRD2
  hgvsc: ENST00000535882.1:c.526-27C>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000334451
  ensembl transcript: ENST00000334363
  gene symbol: TXNRD2
  hgvsc: ENST00000334363.9:c.529-27C>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000471835
  gene symbol: TXNRD2
  hgvsc: ENST00000471835.1:n.74-27C>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383362
  ensembl transcript: ENST00000400518
  gene symbol: TXNRD2
  hgvsc: ENST00000400518.1:c.439-27C>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000496729
  gene symbol: TXNRD2
  hgvsc: ENST00000496729.1:n.534-27C>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000494454
  gene symbol: TXNRD2
  hgvsc: ENST00000494454.1:n.603-27C>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383369
  ensembl transcript: ENST00000400525
  gene symbol: TXNRD2
  hgvsc: ENST00000400525.1:c.460-27C>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383365
  ensembl transcript: ENST00000400521
  gene symbol: TXNRD2
  hgvsc: ENST00000400521.1:c.529-27C>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000491939
  gene symbol: TXNRD2
  hgvsc: ENST00000491939.1:n.519-27C>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000484672
  gene symbol: TXNRD2
  hgvsc: ENST00000484672.1:n.159-27C>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383363
  ensembl transcript: ENST00000400519
  gene symbol: TXNRD2
  hgvsc: ENST00000400519.1:c.526-27C>A
  variant of: http://identifiers.org/hgnc/18155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1540
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22247
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3468
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10970
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7232
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5737
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2240
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

http://identifiers.org/exac.variant/22-19902828-C-CA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19902828
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 19902829
    reference: chr 22
allele count: 3
allele frequency: 3.202322751435708e-5
allele num: 93682
alternate allele: CA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439570
  ensembl transcript: ENST00000542719
  gene symbol: TXNRD2
  hgvsc: ENST00000542719.1:c.439-30dupT
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383365
  ensembl transcript: ENST00000400521
  gene symbol: TXNRD2
  hgvsc: ENST00000400521.1:c.529-30dupT
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383369
  ensembl transcript: ENST00000400525
  gene symbol: TXNRD2
  hgvsc: ENST00000400525.1:c.460-30dupT
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000471835
  gene symbol: TXNRD2
  hgvsc: ENST00000471835.1:n.74-30dupT
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000494454
  gene symbol: TXNRD2
  hgvsc: ENST00000494454.1:n.603-30dupT
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000474308
  gene symbol: TXNRD2
  hgvsc: ENST00000474308.1:n.476-30dupT
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383363
  ensembl transcript: ENST00000400519
  gene symbol: TXNRD2
  hgvsc: ENST00000400519.1:c.526-30dupT
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383362
  ensembl transcript: ENST00000400518
  gene symbol: TXNRD2
  hgvsc: ENST00000400518.1:c.439-30dupT
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000491939
  gene symbol: TXNRD2
  hgvsc: ENST00000491939.1:n.519-30dupT
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439314
  ensembl transcript: ENST00000535882
  gene symbol: TXNRD2
  hgvsc: ENST00000535882.1:c.526-30dupT
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000484672
  gene symbol: TXNRD2
  hgvsc: ENST00000484672.1:n.159-30dupT
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000334451
  ensembl transcript: ENST00000334363
  gene symbol: TXNRD2
  hgvsc: ENST00000334363.9:c.529-30dupT
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000496729
  gene symbol: TXNRD2
  hgvsc: ENST00000496729.1:n.534-30dupT
  variant of: http://identifiers.org/hgnc/18155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4969
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22201
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1715
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2240
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11395
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8050
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: QD

http://identifiers.org/exac.variant/22-19902833-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19902833
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 19902833
    reference: chr 22
allele count: 135
allele frequency: 1.465670734355322e-3
allele num: 92108
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000471835
  gene symbol: TXNRD2
  hgvsc: ENST00000471835.1:n.74-34T>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000474308
  gene symbol: TXNRD2
  hgvsc: ENST00000474308.1:n.476-34T>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383362
  ensembl transcript: ENST00000400518
  gene symbol: TXNRD2
  hgvsc: ENST00000400518.1:c.439-34T>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383365
  ensembl transcript: ENST00000400521
  gene symbol: TXNRD2
  hgvsc: ENST00000400521.1:c.529-34T>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383369
  ensembl transcript: ENST00000400525
  gene symbol: TXNRD2
  hgvsc: ENST00000400525.1:c.460-34T>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000494454
  gene symbol: TXNRD2
  hgvsc: ENST00000494454.1:n.603-34T>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383363
  ensembl transcript: ENST00000400519
  gene symbol: TXNRD2
  hgvsc: ENST00000400519.1:c.526-34T>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000484672
  gene symbol: TXNRD2
  hgvsc: ENST00000484672.1:n.159-34T>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000334451
  ensembl transcript: ENST00000334363
  gene symbol: TXNRD2
  hgvsc: ENST00000334363.9:c.529-34T>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439314
  ensembl transcript: ENST00000535882
  gene symbol: TXNRD2
  hgvsc: ENST00000535882.1:c.526-34T>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439570
  ensembl transcript: ENST00000542719
  gene symbol: TXNRD2
  hgvsc: ENST00000542719.1:c.439-34T>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000496729
  gene symbol: TXNRD2
  hgvsc: ENST00000496729.1:n.534-34T>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000491939
  gene symbol: TXNRD2
  hgvsc: ENST00000491939.1:n.519-34T>G
  variant of: http://identifiers.org/hgnc/18155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22031
  bin: 1.25e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 2399
  bin: 2.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2239
  bin: 9.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 12029
  bin: 7.5e0
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 8747
  bin: 1.75e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1940
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4144
  bin: 2.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

22-19902836-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19902836
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 19902836
    reference: chr 22
allele count: 1
allele frequency: 1.105705440070765e-5
allele num: 90440
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439570
  ensembl transcript: ENST00000542719
  gene symbol: TXNRD2
  hgvsc: ENST00000542719.1:c.439-37A>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383365
  ensembl transcript: ENST00000400521
  gene symbol: TXNRD2
  hgvsc: ENST00000400521.1:c.529-37A>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000484672
  gene symbol: TXNRD2
  hgvsc: ENST00000484672.1:n.159-37A>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000494454
  gene symbol: TXNRD2
  hgvsc: ENST00000494454.1:n.603-37A>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439314
  ensembl transcript: ENST00000535882
  gene symbol: TXNRD2
  hgvsc: ENST00000535882.1:c.526-37A>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383363
  ensembl transcript: ENST00000400519
  gene symbol: TXNRD2
  hgvsc: ENST00000400519.1:c.526-37A>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000334451
  ensembl transcript: ENST00000334363
  gene symbol: TXNRD2
  hgvsc: ENST00000334363.9:c.529-37A>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000474308
  gene symbol: TXNRD2
  hgvsc: ENST00000474308.1:n.476-37A>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000471835
  gene symbol: TXNRD2
  hgvsc: ENST00000471835.1:n.74-37A>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000491939
  gene symbol: TXNRD2
  hgvsc: ENST00000491939.1:n.519-37A>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383362
  ensembl transcript: ENST00000400518
  gene symbol: TXNRD2
  hgvsc: ENST00000400518.1:c.439-37A>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383369
  ensembl transcript: ENST00000400525
  gene symbol: TXNRD2
  hgvsc: ENST00000400525.1:c.460-37A>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000496729
  gene symbol: TXNRD2
  hgvsc: ENST00000496729.1:n.534-37A>C
  variant of: http://identifiers.org/hgnc/18155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21567
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2103
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2234
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3405
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12701
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1942
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum

22-19902838-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19902838
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 19902838
    reference: chr 22
allele count: 1
allele frequency: 1.121805658387741e-5
allele num: 89142
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000484672
  gene symbol: TXNRD2
  hgvsc: ENST00000484672.1:n.159-39G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383362
  ensembl transcript: ENST00000400518
  gene symbol: TXNRD2
  hgvsc: ENST00000400518.1:c.439-39G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000474308
  gene symbol: TXNRD2
  hgvsc: ENST00000474308.1:n.476-39G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000334451
  ensembl transcript: ENST00000334363
  gene symbol: TXNRD2
  hgvsc: ENST00000334363.9:c.529-39G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383363
  ensembl transcript: ENST00000400519
  gene symbol: TXNRD2
  hgvsc: ENST00000400519.1:c.526-39G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439314
  ensembl transcript: ENST00000535882
  gene symbol: TXNRD2
  hgvsc: ENST00000535882.1:c.526-39G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383369
  ensembl transcript: ENST00000400525
  gene symbol: TXNRD2
  hgvsc: ENST00000400525.1:c.460-39G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439570
  ensembl transcript: ENST00000542719
  gene symbol: TXNRD2
  hgvsc: ENST00000542719.1:c.439-39G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000496729
  gene symbol: TXNRD2
  hgvsc: ENST00000496729.1:n.534-39G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000471835
  gene symbol: TXNRD2
  hgvsc: ENST00000471835.1:n.74-39G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000491939
  gene symbol: TXNRD2
  hgvsc: ENST00000491939.1:n.519-39G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383365
  ensembl transcript: ENST00000400521
  gene symbol: TXNRD2
  hgvsc: ENST00000400521.1:c.529-39G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000494454
  gene symbol: TXNRD2
  hgvsc: ENST00000494454.1:n.603-39G>A
  variant of: http://identifiers.org/hgnc/18155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2234
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1729
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3142
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9962
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21226
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2143
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13157
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
population: African
reference allele: C
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

22-19902840-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19902840
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 19902840
    reference: chr 22
allele count: 137
allele frequency: 1.540225749876332e-3
allele num: 88948
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000496729
  gene symbol: TXNRD2
  hgvsc: ENST00000496729.1:n.534-41A>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439570
  ensembl transcript: ENST00000542719
  gene symbol: TXNRD2
  hgvsc: ENST00000542719.1:c.439-41A>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439314
  ensembl transcript: ENST00000535882
  gene symbol: TXNRD2
  hgvsc: ENST00000535882.1:c.526-41A>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000491939
  gene symbol: TXNRD2
  hgvsc: ENST00000491939.1:n.519-41A>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000474308
  gene symbol: TXNRD2
  hgvsc: ENST00000474308.1:n.476-41A>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383365
  ensembl transcript: ENST00000400521
  gene symbol: TXNRD2
  hgvsc: ENST00000400521.1:c.529-41A>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000484672
  gene symbol: TXNRD2
  hgvsc: ENST00000484672.1:n.159-41A>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383362
  ensembl transcript: ENST00000400518
  gene symbol: TXNRD2
  hgvsc: ENST00000400518.1:c.439-41A>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383363
  ensembl transcript: ENST00000400519
  gene symbol: TXNRD2
  hgvsc: ENST00000400519.1:c.526-41A>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000494454
  gene symbol: TXNRD2
  hgvsc: ENST00000494454.1:n.603-41A>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000471835
  gene symbol: TXNRD2
  hgvsc: ENST00000471835.1:n.74-41A>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383369
  ensembl transcript: ENST00000400525
  gene symbol: TXNRD2
  hgvsc: ENST00000400525.1:c.460-41A>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000334451
  ensembl transcript: ENST00000334363
  gene symbol: TXNRD2
  hgvsc: ENST00000334363.9:c.529-41A>G
  variant of: http://identifiers.org/hgnc/18155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13427
  bin: 7.5e0
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10000
  bin: 1.75e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 1628
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 21084
  bin: 1.25e1
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 2151
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3084
  bin: 2.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 1
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum

22-19902847-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19902847
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 19902847
    reference: chr 22
allele count: 2
allele frequency: 2.38191649000786e-5
allele num: 83966
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439570
  ensembl transcript: ENST00000542719
  gene symbol: TXNRD2
  hgvsc: ENST00000542719.1:c.439-48G>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000334451
  ensembl transcript: ENST00000334363
  gene symbol: TXNRD2
  hgvsc: ENST00000334363.9:c.529-48G>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000474308
  gene symbol: TXNRD2
  hgvsc: ENST00000474308.1:n.476-48G>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000491939
  gene symbol: TXNRD2
  hgvsc: ENST00000491939.1:n.519-48G>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439314
  ensembl transcript: ENST00000535882
  gene symbol: TXNRD2
  hgvsc: ENST00000535882.1:c.526-48G>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383362
  ensembl transcript: ENST00000400518
  gene symbol: TXNRD2
  hgvsc: ENST00000400518.1:c.439-48G>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383369
  ensembl transcript: ENST00000400525
  gene symbol: TXNRD2
  hgvsc: ENST00000400525.1:c.460-48G>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383363
  ensembl transcript: ENST00000400519
  gene symbol: TXNRD2
  hgvsc: ENST00000400519.1:c.526-48G>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000496729
  gene symbol: TXNRD2
  hgvsc: ENST00000496729.1:n.534-48G>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383365
  ensembl transcript: ENST00000400521
  gene symbol: TXNRD2
  hgvsc: ENST00000400521.1:c.529-48G>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000494454
  gene symbol: TXNRD2
  hgvsc: ENST00000494454.1:n.603-48G>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000471835
  gene symbol: TXNRD2
  hgvsc: ENST00000471835.1:n.74-48G>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000484672
  gene symbol: TXNRD2
  hgvsc: ENST00000484672.1:n.159-48G>C
  variant of: http://identifiers.org/hgnc/18155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15162
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19687
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9879
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2180
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: QD

22-19902849-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19902849
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 19902849
    reference: chr 22
allele count: 0
allele frequency: 0.0e0
allele num: 83048
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383362
  ensembl transcript: ENST00000400518
  gene symbol: TXNRD2
  hgvsc: ENST00000400518.1:c.439-50G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000496729
  gene symbol: TXNRD2
  hgvsc: ENST00000496729.1:n.534-50G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000474308
  gene symbol: TXNRD2
  hgvsc: ENST00000474308.1:n.476-50G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383363
  ensembl transcript: ENST00000400519
  gene symbol: TXNRD2
  hgvsc: ENST00000400519.1:c.526-50G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439314
  ensembl transcript: ENST00000535882
  gene symbol: TXNRD2
  hgvsc: ENST00000535882.1:c.526-50G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439570
  ensembl transcript: ENST00000542719
  gene symbol: TXNRD2
  hgvsc: ENST00000542719.1:c.439-50G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383365
  ensembl transcript: ENST00000400521
  gene symbol: TXNRD2
  hgvsc: ENST00000400521.1:c.529-50G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000471835
  gene symbol: TXNRD2
  hgvsc: ENST00000471835.1:n.74-50G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000334451
  ensembl transcript: ENST00000334363
  gene symbol: TXNRD2
  hgvsc: ENST00000334363.9:c.529-50G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383369
  ensembl transcript: ENST00000400525
  gene symbol: TXNRD2
  hgvsc: ENST00000400525.1:c.460-50G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000491939
  gene symbol: TXNRD2
  hgvsc: ENST00000491939.1:n.519-50G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000484672
  gene symbol: TXNRD2
  hgvsc: ENST00000484672.1:n.159-50G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000494454
  gene symbol: TXNRD2
  hgvsc: ENST00000494454.1:n.603-50G>A
  variant of: http://identifiers.org/hgnc/18155
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 9784
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2187
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2234
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19528
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3379
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15415
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: FS

22-19903237-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19903237
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 19903237
    reference: chr 22
allele count: 1
allele frequency: 8.302889405513118e-6
allele num: 120440
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383362
  ensembl transcript: ENST00000400518
  gene symbol: TXNRD2
  hgvsc: ENST00000400518.1:c.438+51T>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000491939
  gene symbol: TXNRD2
  hgvsc: ENST00000491939.1:n.518+51T>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000474308
  gene symbol: TXNRD2
  hgvsc: ENST00000474308.1:n.475+51T>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000494454
  gene symbol: TXNRD2
  hgvsc: ENST00000494454.1:n.602+51T>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439570
  ensembl transcript: ENST00000542719
  gene symbol: TXNRD2
  hgvsc: ENST00000542719.1:c.438+51T>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000471835
  gene symbol: TXNRD2
  hgvsc: ENST00000471835.1:n.73+51T>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000496729
  gene symbol: TXNRD2
  hgvsc: ENST00000496729.1:n.533+51T>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383369
  ensembl transcript: ENST00000400525
  gene symbol: TXNRD2
  hgvsc: ENST00000400525.1:c.459+51T>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383365
  ensembl transcript: ENST00000400521
  gene symbol: TXNRD2
  hgvsc: ENST00000400521.1:c.528+51T>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383363
  ensembl transcript: ENST00000400519
  gene symbol: TXNRD2
  hgvsc: ENST00000400519.1:c.525+51T>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000484672
  gene symbol: TXNRD2
  hgvsc: ENST00000484672.1:n.158+51T>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000334451
  ensembl transcript: ENST00000334363
  gene symbol: TXNRD2
  hgvsc: ENST00000334363.9:c.528+51T>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439314
  ensembl transcript: ENST00000535882
  gene symbol: TXNRD2
  hgvsc: ENST00000535882.1:c.525+51T>C
  variant of: http://identifiers.org/hgnc/18155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11775
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3349
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24613
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9560
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum

22-19903244-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19903244
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 19903244
    reference: chr 22
allele count: 5
allele frequency: 4.14868901427149e-5
allele num: 120520
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000484672
  gene symbol: TXNRD2
  hgvsc: ENST00000484672.1:n.158+44G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383369
  ensembl transcript: ENST00000400525
  gene symbol: TXNRD2
  hgvsc: ENST00000400525.1:c.459+44G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000491939
  gene symbol: TXNRD2
  hgvsc: ENST00000491939.1:n.518+44G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439314
  ensembl transcript: ENST00000535882
  gene symbol: TXNRD2
  hgvsc: ENST00000535882.1:c.525+44G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000496729
  gene symbol: TXNRD2
  hgvsc: ENST00000496729.1:n.533+44G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000494454
  gene symbol: TXNRD2
  hgvsc: ENST00000494454.1:n.602+44G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000474308
  gene symbol: TXNRD2
  hgvsc: ENST00000474308.1:n.475+44G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439570
  ensembl transcript: ENST00000542719
  gene symbol: TXNRD2
  hgvsc: ENST00000542719.1:c.438+44G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000471835
  gene symbol: TXNRD2
  hgvsc: ENST00000471835.1:n.73+44G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383365
  ensembl transcript: ENST00000400521
  gene symbol: TXNRD2
  hgvsc: ENST00000400521.1:c.528+44G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383363
  ensembl transcript: ENST00000400519
  gene symbol: TXNRD2
  hgvsc: ENST00000400519.1:c.525+44G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000334451
  ensembl transcript: ENST00000334363
  gene symbol: TXNRD2
  hgvsc: ENST00000334363.9:c.528+44G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383362
  ensembl transcript: ENST00000400518
  gene symbol: TXNRD2
  hgvsc: ENST00000400518.1:c.438+44G>A
  variant of: http://identifiers.org/hgnc/18155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24960
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1961
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12724
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2250
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9449
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: African
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ

http://identifiers.org/exac.variant/22-19903245-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19903245
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 19903245
    reference: chr 22
allele count: 1
allele frequency: 8.296414289743973e-6
allele num: 120534
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383362
  ensembl transcript: ENST00000400518
  gene symbol: TXNRD2
  hgvsc: ENST00000400518.1:c.438+43T>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000334451
  ensembl transcript: ENST00000334363
  gene symbol: TXNRD2
  hgvsc: ENST00000334363.9:c.528+43T>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000491939
  gene symbol: TXNRD2
  hgvsc: ENST00000491939.1:n.518+43T>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000474308
  gene symbol: TXNRD2
  hgvsc: ENST00000474308.1:n.475+43T>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383369
  ensembl transcript: ENST00000400525
  gene symbol: TXNRD2
  hgvsc: ENST00000400525.1:c.459+43T>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000496729
  gene symbol: TXNRD2
  hgvsc: ENST00000496729.1:n.533+43T>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383365
  ensembl transcript: ENST00000400521
  gene symbol: TXNRD2
  hgvsc: ENST00000400521.1:c.528+43T>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000484672
  gene symbol: TXNRD2
  hgvsc: ENST00000484672.1:n.158+43T>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000471835
  gene symbol: TXNRD2
  hgvsc: ENST00000471835.1:n.73+43T>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439314
  ensembl transcript: ENST00000535882
  gene symbol: TXNRD2
  hgvsc: ENST00000535882.1:c.525+43T>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439570
  ensembl transcript: ENST00000542719
  gene symbol: TXNRD2
  hgvsc: ENST00000542719.1:c.438+43T>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383363
  ensembl transcript: ENST00000400519
  gene symbol: TXNRD2
  hgvsc: ENST00000400519.1:c.525+43T>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000494454
  gene symbol: TXNRD2
  hgvsc: ENST00000494454.1:n.602+43T>G
  variant of: http://identifiers.org/hgnc/18155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1954
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12926
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25070
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1969
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: A
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff

22-19903246-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19903246
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 19903246
    reference: chr 22
allele count: 1
allele frequency: 8.295863682367972e-6
allele num: 120542
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383369
  ensembl transcript: ENST00000400525
  gene symbol: TXNRD2
  hgvsc: ENST00000400525.1:c.459+42C>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000474308
  gene symbol: TXNRD2
  hgvsc: ENST00000474308.1:n.475+42C>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000484672
  gene symbol: TXNRD2
  hgvsc: ENST00000484672.1:n.158+42C>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000491939
  gene symbol: TXNRD2
  hgvsc: ENST00000491939.1:n.518+42C>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000494454
  gene symbol: TXNRD2
  hgvsc: ENST00000494454.1:n.602+42C>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383362
  ensembl transcript: ENST00000400518
  gene symbol: TXNRD2
  hgvsc: ENST00000400518.1:c.438+42C>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439570
  ensembl transcript: ENST00000542719
  gene symbol: TXNRD2
  hgvsc: ENST00000542719.1:c.438+42C>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000471835
  gene symbol: TXNRD2
  hgvsc: ENST00000471835.1:n.73+42C>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383365
  ensembl transcript: ENST00000400521
  gene symbol: TXNRD2
  hgvsc: ENST00000400521.1:c.528+42C>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000334451
  ensembl transcript: ENST00000334363
  gene symbol: TXNRD2
  hgvsc: ENST00000334363.9:c.528+42C>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383363
  ensembl transcript: ENST00000400519
  gene symbol: TXNRD2
  hgvsc: ENST00000400519.1:c.525+42C>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000496729
  gene symbol: TXNRD2
  hgvsc: ENST00000496729.1:n.533+42C>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439314
  ensembl transcript: ENST00000535882
  gene symbol: TXNRD2
  hgvsc: ENST00000535882.1:c.525+42C>G
  variant of: http://identifiers.org/hgnc/18155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1953
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13038
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1798
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9494
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25102
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

22-19903252-TCCACAAGGAG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19903252
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 19903242
    reference: chr 22
allele count: 1
allele frequency: 8.29531314807134e-6
allele num: 120550
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000474308
  gene symbol: TXNRD2
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000491939
  gene symbol: TXNRD2
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000484672
  gene symbol: TXNRD2
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383363
  ensembl transcript: ENST00000400519
  gene symbol: TXNRD2
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000334451
  ensembl transcript: ENST00000334363
  gene symbol: TXNRD2
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000494454
  gene symbol: TXNRD2
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000496729
  gene symbol: TXNRD2
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383369
  ensembl transcript: ENST00000400525
  gene symbol: TXNRD2
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439570
  ensembl transcript: ENST00000542719
  gene symbol: TXNRD2
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000471835
  gene symbol: TXNRD2
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383365
  ensembl transcript: ENST00000400521
  gene symbol: TXNRD2
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439314
  ensembl transcript: ENST00000535882
  gene symbol: TXNRD2
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383362
  ensembl transcript: ENST00000400518
  gene symbol: TXNRD2
  variant of: http://identifiers.org/hgnc/18155
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13406
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1956
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9503
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25564
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: TCCACAAGGAG
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

22-19903255-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19903255
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 19903255
    reference: chr 22
allele count: 1
allele frequency: 8.292561572269675e-6
allele num: 120590
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000494454
  gene symbol: TXNRD2
  hgvsc: ENST00000494454.1:n.602+33T>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383369
  ensembl transcript: ENST00000400525
  gene symbol: TXNRD2
  hgvsc: ENST00000400525.1:c.459+33T>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439314
  ensembl transcript: ENST00000535882
  gene symbol: TXNRD2
  hgvsc: ENST00000535882.1:c.525+33T>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000496729
  gene symbol: TXNRD2
  hgvsc: ENST00000496729.1:n.533+33T>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000474308
  gene symbol: TXNRD2
  hgvsc: ENST00000474308.1:n.475+33T>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383365
  ensembl transcript: ENST00000400521
  gene symbol: TXNRD2
  hgvsc: ENST00000400521.1:c.528+33T>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000334451
  ensembl transcript: ENST00000334363
  gene symbol: TXNRD2
  hgvsc: ENST00000334363.9:c.528+33T>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000491939
  gene symbol: TXNRD2
  hgvsc: ENST00000491939.1:n.518+33T>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000484672
  gene symbol: TXNRD2
  hgvsc: ENST00000484672.1:n.158+33T>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000471835
  gene symbol: TXNRD2
  hgvsc: ENST00000471835.1:n.73+33T>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439570
  ensembl transcript: ENST00000542719
  gene symbol: TXNRD2
  hgvsc: ENST00000542719.1:c.438+33T>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383362
  ensembl transcript: ENST00000400518
  gene symbol: TXNRD2
  hgvsc: ENST00000400518.1:c.438+33T>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383363
  ensembl transcript: ENST00000400519
  gene symbol: TXNRD2
  hgvsc: ENST00000400519.1:c.525+33T>C
  variant of: http://identifiers.org/hgnc/18155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25820
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1939
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9528
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: A
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: VQSLOD

22-19903260-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19903260
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 19903260
    reference: chr 22
allele count: 2
allele frequency: 1.658209796703479e-5
allele num: 120612
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000491939
  gene symbol: TXNRD2
  hgvsc: ENST00000491939.1:n.518+28C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383363
  ensembl transcript: ENST00000400519
  gene symbol: TXNRD2
  hgvsc: ENST00000400519.1:c.525+28C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383365
  ensembl transcript: ENST00000400521
  gene symbol: TXNRD2
  hgvsc: ENST00000400521.1:c.528+28C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383369
  ensembl transcript: ENST00000400525
  gene symbol: TXNRD2
  hgvsc: ENST00000400525.1:c.459+28C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439314
  ensembl transcript: ENST00000535882
  gene symbol: TXNRD2
  hgvsc: ENST00000535882.1:c.525+28C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383362
  ensembl transcript: ENST00000400518
  gene symbol: TXNRD2
  hgvsc: ENST00000400518.1:c.438+28C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000496729
  gene symbol: TXNRD2
  hgvsc: ENST00000496729.1:n.533+28C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000474308
  gene symbol: TXNRD2
  hgvsc: ENST00000474308.1:n.475+28C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439570
  ensembl transcript: ENST00000542719
  gene symbol: TXNRD2
  hgvsc: ENST00000542719.1:c.438+28C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000471835
  gene symbol: TXNRD2
  hgvsc: ENST00000471835.1:n.73+28C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000494454
  gene symbol: TXNRD2
  hgvsc: ENST00000494454.1:n.602+28C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000334451
  ensembl transcript: ENST00000334363
  gene symbol: TXNRD2
  hgvsc: ENST00000334363.9:c.528+28C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000484672
  gene symbol: TXNRD2
  hgvsc: ENST00000484672.1:n.158+28C>T
  variant of: http://identifiers.org/hgnc/18155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13793
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1937
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9566
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26002
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: European (Finnish)
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff

22-19903260-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19903260
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 19903260
    reference: chr 22
allele count: 1
allele frequency: 8.291048983517394e-6
allele num: 120612
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383369
  ensembl transcript: ENST00000400525
  gene symbol: TXNRD2
  hgvsc: ENST00000400525.1:c.459+28C>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000474308
  gene symbol: TXNRD2
  hgvsc: ENST00000474308.1:n.475+28C>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439570
  ensembl transcript: ENST00000542719
  gene symbol: TXNRD2
  hgvsc: ENST00000542719.1:c.438+28C>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000494454
  gene symbol: TXNRD2
  hgvsc: ENST00000494454.1:n.602+28C>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000491939
  gene symbol: TXNRD2
  hgvsc: ENST00000491939.1:n.518+28C>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000471835
  gene symbol: TXNRD2
  hgvsc: ENST00000471835.1:n.73+28C>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383363
  ensembl transcript: ENST00000400519
  gene symbol: TXNRD2
  hgvsc: ENST00000400519.1:c.525+28C>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000334451
  ensembl transcript: ENST00000334363
  gene symbol: TXNRD2
  hgvsc: ENST00000334363.9:c.528+28C>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000484672
  gene symbol: TXNRD2
  hgvsc: ENST00000484672.1:n.158+28C>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383362
  ensembl transcript: ENST00000400518
  gene symbol: TXNRD2
  hgvsc: ENST00000400518.1:c.438+28C>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439314
  ensembl transcript: ENST00000535882
  gene symbol: TXNRD2
  hgvsc: ENST00000535882.1:c.525+28C>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000496729
  gene symbol: TXNRD2
  hgvsc: ENST00000496729.1:n.533+28C>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383365
  ensembl transcript: ENST00000400521
  gene symbol: TXNRD2
  hgvsc: ENST00000400521.1:c.528+28C>G
  variant of: http://identifiers.org/hgnc/18155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13793
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26002
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9566
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1937
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

22-19903262-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19903262
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 19903262
    reference: chr 22
allele count: 41
allele frequency: 3.398653801518618e-4
allele num: 120636
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000474308
  gene symbol: TXNRD2
  hgvsc: ENST00000474308.1:n.475+26C>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000471835
  gene symbol: TXNRD2
  hgvsc: ENST00000471835.1:n.73+26C>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439314
  ensembl transcript: ENST00000535882
  gene symbol: TXNRD2
  hgvsc: ENST00000535882.1:c.525+26C>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383369
  ensembl transcript: ENST00000400525
  gene symbol: TXNRD2
  hgvsc: ENST00000400525.1:c.459+26C>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383362
  ensembl transcript: ENST00000400518
  gene symbol: TXNRD2
  hgvsc: ENST00000400518.1:c.438+26C>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000334451
  ensembl transcript: ENST00000334363
  gene symbol: TXNRD2
  hgvsc: ENST00000334363.9:c.528+26C>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000496729
  gene symbol: TXNRD2
  hgvsc: ENST00000496729.1:n.533+26C>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000484672
  gene symbol: TXNRD2
  hgvsc: ENST00000484672.1:n.158+26C>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383365
  ensembl transcript: ENST00000400521
  gene symbol: TXNRD2
  hgvsc: ENST00000400521.1:c.528+26C>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439570
  ensembl transcript: ENST00000542719
  gene symbol: TXNRD2
  hgvsc: ENST00000542719.1:c.438+26C>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000494454
  gene symbol: TXNRD2
  hgvsc: ENST00000494454.1:n.602+26C>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000491939
  gene symbol: TXNRD2
  hgvsc: ENST00000491939.1:n.518+26C>G
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383363
  ensembl transcript: ENST00000400519
  gene symbol: TXNRD2
  hgvsc: ENST00000400519.1:c.525+26C>G
  variant of: http://identifiers.org/hgnc/18155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 5.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1929
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9567
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13870
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

22-19903266-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19903266
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 19903266
    reference: chr 22
allele count: 1
allele frequency: 8.286789200656313e-6
allele num: 120674
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000334451
  ensembl transcript: ENST00000334363
  gene symbol: TXNRD2
  hgvsc: ENST00000334363.9:c.528+22G>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439314
  ensembl transcript: ENST00000535882
  gene symbol: TXNRD2
  hgvsc: ENST00000535882.1:c.525+22G>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000491939
  gene symbol: TXNRD2
  hgvsc: ENST00000491939.1:n.518+22G>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439570
  ensembl transcript: ENST00000542719
  gene symbol: TXNRD2
  hgvsc: ENST00000542719.1:c.438+22G>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383365
  ensembl transcript: ENST00000400521
  gene symbol: TXNRD2
  hgvsc: ENST00000400521.1:c.528+22G>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383363
  ensembl transcript: ENST00000400519
  gene symbol: TXNRD2
  hgvsc: ENST00000400519.1:c.525+22G>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000496729
  gene symbol: TXNRD2
  hgvsc: ENST00000496729.1:n.533+22G>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000494454
  gene symbol: TXNRD2
  hgvsc: ENST00000494454.1:n.602+22G>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000471835
  gene symbol: TXNRD2
  hgvsc: ENST00000471835.1:n.73+22G>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383362
  ensembl transcript: ENST00000400518
  gene symbol: TXNRD2
  hgvsc: ENST00000400518.1:c.438+22G>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000484672
  gene symbol: TXNRD2
  hgvsc: ENST00000484672.1:n.158+22G>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383369
  ensembl transcript: ENST00000400525
  gene symbol: TXNRD2
  hgvsc: ENST00000400525.1:c.459+22G>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000474308
  gene symbol: TXNRD2
  hgvsc: ENST00000474308.1:n.475+22G>C
  variant of: http://identifiers.org/hgnc/18155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26196
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9597
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1925
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: African
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: QD

22-19903267-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19903267
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 19903267
    reference: chr 22
allele count: 26
allele frequency: 2.154458070931389e-4
allele num: 120680
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439570
  ensembl transcript: ENST00000542719
  gene symbol: TXNRD2
  hgvsc: ENST00000542719.1:c.438+21C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439314
  ensembl transcript: ENST00000535882
  gene symbol: TXNRD2
  hgvsc: ENST00000535882.1:c.525+21C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383369
  ensembl transcript: ENST00000400525
  gene symbol: TXNRD2
  hgvsc: ENST00000400525.1:c.459+21C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000496729
  gene symbol: TXNRD2
  hgvsc: ENST00000496729.1:n.533+21C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000334451
  ensembl transcript: ENST00000334363
  gene symbol: TXNRD2
  hgvsc: ENST00000334363.9:c.528+21C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000484672
  gene symbol: TXNRD2
  hgvsc: ENST00000484672.1:n.158+21C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000494454
  gene symbol: TXNRD2
  hgvsc: ENST00000494454.1:n.602+21C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000474308
  gene symbol: TXNRD2
  hgvsc: ENST00000474308.1:n.475+21C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383365
  ensembl transcript: ENST00000400521
  gene symbol: TXNRD2
  hgvsc: ENST00000400521.1:c.528+21C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000471835
  gene symbol: TXNRD2
  hgvsc: ENST00000471835.1:n.73+21C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383362
  ensembl transcript: ENST00000400518
  gene symbol: TXNRD2
  hgvsc: ENST00000400518.1:c.438+21C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000491939
  gene symbol: TXNRD2
  hgvsc: ENST00000491939.1:n.518+21C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383363
  ensembl transcript: ENST00000400519
  gene symbol: TXNRD2
  hgvsc: ENST00000400519.1:c.525+21C>T
  variant of: http://identifiers.org/hgnc/18155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26233
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9590
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1932
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 14125
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 1
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

22-19903268-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19903268
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 19903268
    reference: chr 22
allele count: 2
allele frequency: 1.657028285472833e-5
allele num: 120698
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000491939
  gene symbol: TXNRD2
  hgvsc: ENST00000491939.1:n.518+20G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000474308
  gene symbol: TXNRD2
  hgvsc: ENST00000474308.1:n.475+20G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383363
  ensembl transcript: ENST00000400519
  gene symbol: TXNRD2
  hgvsc: ENST00000400519.1:c.525+20G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383365
  ensembl transcript: ENST00000400521
  gene symbol: TXNRD2
  hgvsc: ENST00000400521.1:c.528+20G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439570
  ensembl transcript: ENST00000542719
  gene symbol: TXNRD2
  hgvsc: ENST00000542719.1:c.438+20G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000484672
  gene symbol: TXNRD2
  hgvsc: ENST00000484672.1:n.158+20G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383362
  ensembl transcript: ENST00000400518
  gene symbol: TXNRD2
  hgvsc: ENST00000400518.1:c.438+20G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000494454
  gene symbol: TXNRD2
  hgvsc: ENST00000494454.1:n.602+20G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000471835
  gene symbol: TXNRD2
  hgvsc: ENST00000471835.1:n.73+20G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000496729
  gene symbol: TXNRD2
  hgvsc: ENST00000496729.1:n.533+20G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383369
  ensembl transcript: ENST00000400525
  gene symbol: TXNRD2
  hgvsc: ENST00000400525.1:c.459+20G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000334451
  ensembl transcript: ENST00000334363
  gene symbol: TXNRD2
  hgvsc: ENST00000334363.9:c.528+20G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439314
  ensembl transcript: ENST00000535882
  gene symbol: TXNRD2
  hgvsc: ENST00000535882.1:c.525+20G>A
  variant of: http://identifiers.org/hgnc/18155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1924
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26288
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14158
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9592
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

22-19903269-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19903269
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 19903269
    reference: chr 22
allele count: 1
allele frequency: 8.2847295864263e-6
allele num: 120704
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439314
  ensembl transcript: ENST00000535882
  gene symbol: TXNRD2
  hgvsc: ENST00000535882.1:c.525+19C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383363
  ensembl transcript: ENST00000400519
  gene symbol: TXNRD2
  hgvsc: ENST00000400519.1:c.525+19C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000474308
  gene symbol: TXNRD2
  hgvsc: ENST00000474308.1:n.475+19C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000334451
  ensembl transcript: ENST00000334363
  gene symbol: TXNRD2
  hgvsc: ENST00000334363.9:c.528+19C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000496729
  gene symbol: TXNRD2
  hgvsc: ENST00000496729.1:n.533+19C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383362
  ensembl transcript: ENST00000400518
  gene symbol: TXNRD2
  hgvsc: ENST00000400518.1:c.438+19C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439570
  ensembl transcript: ENST00000542719
  gene symbol: TXNRD2
  hgvsc: ENST00000542719.1:c.438+19C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383369
  ensembl transcript: ENST00000400525
  gene symbol: TXNRD2
  hgvsc: ENST00000400525.1:c.459+19C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383365
  ensembl transcript: ENST00000400521
  gene symbol: TXNRD2
  hgvsc: ENST00000400521.1:c.528+19C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000484672
  gene symbol: TXNRD2
  hgvsc: ENST00000484672.1:n.158+19C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000491939
  gene symbol: TXNRD2
  hgvsc: ENST00000491939.1:n.518+19C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000471835
  gene symbol: TXNRD2
  hgvsc: ENST00000471835.1:n.73+19C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000494454
  gene symbol: TXNRD2
  hgvsc: ENST00000494454.1:n.602+19C>T
  variant of: http://identifiers.org/hgnc/18155
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26320
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14174
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

22-19903282-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19903282
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 19903282
    reference: chr 22
allele count: 2
allele frequency: 1.656424442199069e-5
allele num: 120742
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383363
  ensembl transcript: ENST00000400519
  gene symbol: TXNRD2
  hgvsc: ENST00000400519.1:c.525+6C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439570
  ensembl transcript: ENST00000542719
  gene symbol: TXNRD2
  hgvsc: ENST00000542719.1:c.438+6C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383362
  ensembl transcript: ENST00000400518
  gene symbol: TXNRD2
  hgvsc: ENST00000400518.1:c.438+6C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000471835
  gene symbol: TXNRD2
  hgvsc: ENST00000471835.1:n.73+6C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000474308
  gene symbol: TXNRD2
  hgvsc: ENST00000474308.1:n.475+6C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383365
  ensembl transcript: ENST00000400521
  gene symbol: TXNRD2
  hgvsc: ENST00000400521.1:c.528+6C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000494454
  gene symbol: TXNRD2
  hgvsc: ENST00000494454.1:n.602+6C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383369
  ensembl transcript: ENST00000400525
  gene symbol: TXNRD2
  hgvsc: ENST00000400525.1:c.459+6C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000496729
  gene symbol: TXNRD2
  hgvsc: ENST00000496729.1:n.533+6C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000491939
  gene symbol: TXNRD2
  hgvsc: ENST00000491939.1:n.518+6C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439314
  ensembl transcript: ENST00000535882
  gene symbol: TXNRD2
  hgvsc: ENST00000535882.1:c.525+6C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000484672
  gene symbol: TXNRD2
  hgvsc: ENST00000484672.1:n.158+6C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000334451
  ensembl transcript: ENST00000334363
  gene symbol: TXNRD2
  hgvsc: ENST00000334363.9:c.528+6C>T
  variant of: http://identifiers.org/hgnc/18155
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26477
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1922
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9607
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: c.528+6C>T
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: African
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: QD

22-19903286-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19903286
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 19903286
    reference: chr 22
allele count: 1
allele frequency: 8.281710670156027e-6
allele num: 120748
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383363
  ensembl transcript: ENST00000400519
  gene symbol: TXNRD2
  hgvsc: ENST00000400519.1:c.525+2T>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000471835
  gene symbol: TXNRD2
  hgvsc: ENST00000471835.1:n.73+2T>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383365
  ensembl transcript: ENST00000400521
  gene symbol: TXNRD2
  hgvsc: ENST00000400521.1:c.528+2T>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383369
  ensembl transcript: ENST00000400525
  gene symbol: TXNRD2
  hgvsc: ENST00000400525.1:c.459+2T>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000474308
  gene symbol: TXNRD2
  hgvsc: ENST00000474308.1:n.475+2T>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439314
  ensembl transcript: ENST00000535882
  gene symbol: TXNRD2
  hgvsc: ENST00000535882.1:c.525+2T>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000491939
  gene symbol: TXNRD2
  hgvsc: ENST00000491939.1:n.518+2T>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000484672
  gene symbol: TXNRD2
  hgvsc: ENST00000484672.1:n.158+2T>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439570
  ensembl transcript: ENST00000542719
  gene symbol: TXNRD2
  hgvsc: ENST00000542719.1:c.438+2T>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383362
  ensembl transcript: ENST00000400518
  gene symbol: TXNRD2
  hgvsc: ENST00000400518.1:c.438+2T>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000334451
  ensembl transcript: ENST00000334363
  gene symbol: TXNRD2
  hgvsc: ENST00000334363.9:c.528+2T>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000496729
  gene symbol: TXNRD2
  hgvsc: ENST00000496729.1:n.533+2T>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000494454
  gene symbol: TXNRD2
  hgvsc: ENST00000494454.1:n.602+2T>C
  variant of: http://identifiers.org/hgnc/18155
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1924
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26503
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14261
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.528+2T>C
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS

22-19903287-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19903287
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 19903287
    reference: chr 22
allele count: 1
allele frequency: 8.281710670156027e-6
allele num: 120748
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383362
  ensembl transcript: ENST00000400518
  gene symbol: TXNRD2
  hgvsc: ENST00000400518.1:c.438+1G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000494454
  gene symbol: TXNRD2
  hgvsc: ENST00000494454.1:n.602+1G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000484672
  gene symbol: TXNRD2
  hgvsc: ENST00000484672.1:n.158+1G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439570
  ensembl transcript: ENST00000542719
  gene symbol: TXNRD2
  hgvsc: ENST00000542719.1:c.438+1G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000471835
  gene symbol: TXNRD2
  hgvsc: ENST00000471835.1:n.73+1G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383369
  ensembl transcript: ENST00000400525
  gene symbol: TXNRD2
  hgvsc: ENST00000400525.1:c.459+1G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439314
  ensembl transcript: ENST00000535882
  gene symbol: TXNRD2
  hgvsc: ENST00000535882.1:c.525+1G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000496729
  gene symbol: TXNRD2
  hgvsc: ENST00000496729.1:n.533+1G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000491939
  gene symbol: TXNRD2
  hgvsc: ENST00000491939.1:n.518+1G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383363
  ensembl transcript: ENST00000400519
  gene symbol: TXNRD2
  hgvsc: ENST00000400519.1:c.525+1G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000474308
  gene symbol: TXNRD2
  hgvsc: ENST00000474308.1:n.475+1G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000334451
  ensembl transcript: ENST00000334363
  gene symbol: TXNRD2
  hgvsc: ENST00000334363.9:c.528+1G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383365
  ensembl transcript: ENST00000400521
  gene symbol: TXNRD2
  hgvsc: ENST00000400521.1:c.528+1G>A
  variant of: http://identifiers.org/hgnc/18155
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14260
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9609
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1922
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.528+1G>A
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

22-19903290-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19903290
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 19903290
    reference: chr 22
allele count: 788
allele frequency: 6.525663746128492e-3
allele num: 120754
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439570
  ensembl transcript: ENST00000542719
  gene symbol: TXNRD2
  hgvsc: ENST00000542719.1:c.436G>C
  hgvsp: ENSP00000439570.1:p.Glu146Gln
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000496729
  gene symbol: TXNRD2
  hgvsc: ENST00000496729.1:n.531G>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383369
  ensembl transcript: ENST00000400525
  gene symbol: TXNRD2
  hgvsc: ENST00000400525.1:c.457G>C
  hgvsp: ENSP00000383369.2:p.Glu153Gln
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000471835
  gene symbol: TXNRD2
  hgvsc: ENST00000471835.1:n.71G>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383362
  ensembl transcript: ENST00000400518
  gene symbol: TXNRD2
  hgvsc: ENST00000400518.1:c.436G>C
  hgvsp: ENSP00000383362.1:p.Glu146Gln
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383363
  ensembl transcript: ENST00000400519
  gene symbol: TXNRD2
  hgvsc: ENST00000400519.1:c.523G>C
  hgvsp: ENSP00000383363.1:p.Glu175Gln
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000491939
  gene symbol: TXNRD2
  hgvsc: ENST00000491939.1:n.516G>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383365
  ensembl transcript: ENST00000400521
  gene symbol: TXNRD2
  hgvsc: ENST00000400521.1:c.526G>C
  hgvsp: ENSP00000383365.1:p.Glu176Gln
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000474308
  gene symbol: TXNRD2
  hgvsc: ENST00000474308.1:n.473G>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000334451
  ensembl transcript: ENST00000334363
  gene symbol: TXNRD2
  hgvsc: ENST00000334363.9:c.526G>C
  hgvsp: ENSP00000334451.9:p.Glu176Gln
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000484672
  gene symbol: TXNRD2
  hgvsc: ENST00000484672.1:n.156G>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439314
  ensembl transcript: ENST00000535882
  gene symbol: TXNRD2
  hgvsc: ENST00000535882.1:c.523G>C
  hgvsp: ENSP00000439314.1:p.Glu175Gln
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000494454
  gene symbol: TXNRD2
  hgvsc: ENST00000494454.1:n.600G>C
  variant of: http://identifiers.org/hgnc/18155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 9.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 26428
  bin: 2.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 6.75e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 7.25e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 4.75e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 1871
  bin: 3.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 9516
  bin: 3.25e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 5.25e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14105
  bin: 2.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
hgvs: p.Glu176Gln
num of homozygotes: 28
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: DP

22-19903297-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19903297
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 19903297
    reference: chr 22
allele count: 2
allele frequency: 1.656342134031205e-5
allele num: 120748
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439314
  ensembl transcript: ENST00000535882
  gene symbol: TXNRD2
  hgvsc: ENST00000535882.1:c.516T>A
  hgvsp: ENST00000535882.1:c.516T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000496729
  gene symbol: TXNRD2
  hgvsc: ENST00000496729.1:n.524T>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000484672
  gene symbol: TXNRD2
  hgvsc: ENST00000484672.1:n.149T>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000494454
  gene symbol: TXNRD2
  hgvsc: ENST00000494454.1:n.593T>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383365
  ensembl transcript: ENST00000400521
  gene symbol: TXNRD2
  hgvsc: ENST00000400521.1:c.519T>A
  hgvsp: ENST00000400521.1:c.519T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383369
  ensembl transcript: ENST00000400525
  gene symbol: TXNRD2
  hgvsc: ENST00000400525.1:c.450T>A
  hgvsp: ENST00000400525.1:c.450T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439570
  ensembl transcript: ENST00000542719
  gene symbol: TXNRD2
  hgvsc: ENST00000542719.1:c.429T>A
  hgvsp: ENST00000542719.1:c.429T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000491939
  gene symbol: TXNRD2
  hgvsc: ENST00000491939.1:n.509T>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000334451
  ensembl transcript: ENST00000334363
  gene symbol: TXNRD2
  hgvsc: ENST00000334363.9:c.519T>A
  hgvsp: ENST00000334363.9:c.519T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383363
  ensembl transcript: ENST00000400519
  gene symbol: TXNRD2
  hgvsc: ENST00000400519.1:c.516T>A
  hgvsp: ENST00000400519.1:c.516T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000471835
  gene symbol: TXNRD2
  hgvsc: ENST00000471835.1:n.64T>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383362
  ensembl transcript: ENST00000400518
  gene symbol: TXNRD2
  hgvsc: ENST00000400518.1:c.429T>A
  hgvsp: ENST00000400518.1:c.429T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000474308
  gene symbol: TXNRD2
  hgvsc: ENST00000474308.1:n.466T>A
  variant of: http://identifiers.org/hgnc/18155
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14173
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9643
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly173Gly
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: QD

22-19903300-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19903300
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 19903300
    reference: chr 22
allele count: 1
allele frequency: 8.281436332317477e-6
allele num: 120752
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383363
  ensembl transcript: ENST00000400519
  gene symbol: TXNRD2
  hgvsc: ENST00000400519.1:c.513A>C
  hgvsp: ENSP00000383363.1:p.Lys171Asn
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383369
  ensembl transcript: ENST00000400525
  gene symbol: TXNRD2
  hgvsc: ENST00000400525.1:c.447A>C
  hgvsp: ENSP00000383369.2:p.Lys149Asn
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000484672
  gene symbol: TXNRD2
  hgvsc: ENST00000484672.1:n.146A>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383362
  ensembl transcript: ENST00000400518
  gene symbol: TXNRD2
  hgvsc: ENST00000400518.1:c.426A>C
  hgvsp: ENSP00000383362.1:p.Lys142Asn
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000334451
  ensembl transcript: ENST00000334363
  gene symbol: TXNRD2
  hgvsc: ENST00000334363.9:c.516A>C
  hgvsp: ENSP00000334451.9:p.Lys172Asn
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000474308
  gene symbol: TXNRD2
  hgvsc: ENST00000474308.1:n.463A>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000496729
  gene symbol: TXNRD2
  hgvsc: ENST00000496729.1:n.521A>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383365
  ensembl transcript: ENST00000400521
  gene symbol: TXNRD2
  hgvsc: ENST00000400521.1:c.516A>C
  hgvsp: ENSP00000383365.1:p.Lys172Asn
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439570
  ensembl transcript: ENST00000542719
  gene symbol: TXNRD2
  hgvsc: ENST00000542719.1:c.426A>C
  hgvsp: ENSP00000439570.1:p.Lys142Asn
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000491939
  gene symbol: TXNRD2
  hgvsc: ENST00000491939.1:n.506A>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000471835
  gene symbol: TXNRD2
  hgvsc: ENST00000471835.1:n.61A>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000494454
  gene symbol: TXNRD2
  hgvsc: ENST00000494454.1:n.590A>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439314
  ensembl transcript: ENST00000535882
  gene symbol: TXNRD2
  hgvsc: ENST00000535882.1:c.513A>C
  hgvsp: ENSP00000439314.1:p.Lys171Asn
  variant of: http://identifiers.org/hgnc/18155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1873
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26785
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys172Asn
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ

22-19903308-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19903308
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 19903308
    reference: chr 22
allele count: 1
allele frequency: 8.281299170213822e-6
allele num: 120754
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000471835
  gene symbol: TXNRD2
  hgvsc: ENST00000471835.1:n.53G>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383369
  ensembl transcript: ENST00000400525
  gene symbol: TXNRD2
  hgvsc: ENST00000400525.1:c.439G>C
  hgvsp: ENSP00000383369.2:p.Val147Leu
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383362
  ensembl transcript: ENST00000400518
  gene symbol: TXNRD2
  hgvsc: ENST00000400518.1:c.418G>C
  hgvsp: ENSP00000383362.1:p.Val140Leu
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383365
  ensembl transcript: ENST00000400521
  gene symbol: TXNRD2
  hgvsc: ENST00000400521.1:c.508G>C
  hgvsp: ENSP00000383365.1:p.Val170Leu
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000491939
  gene symbol: TXNRD2
  hgvsc: ENST00000491939.1:n.498G>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383363
  ensembl transcript: ENST00000400519
  gene symbol: TXNRD2
  hgvsc: ENST00000400519.1:c.505G>C
  hgvsp: ENSP00000383363.1:p.Val169Leu
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000474308
  gene symbol: TXNRD2
  hgvsc: ENST00000474308.1:n.455G>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439314
  ensembl transcript: ENST00000535882
  gene symbol: TXNRD2
  hgvsc: ENST00000535882.1:c.505G>C
  hgvsp: ENSP00000439314.1:p.Val169Leu
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439570
  ensembl transcript: ENST00000542719
  gene symbol: TXNRD2
  hgvsc: ENST00000542719.1:c.418G>C
  hgvsp: ENSP00000439570.1:p.Val140Leu
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000334451
  ensembl transcript: ENST00000334363
  gene symbol: TXNRD2
  hgvsc: ENST00000334363.9:c.508G>C
  hgvsp: ENSP00000334451.9:p.Val170Leu
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000496729
  gene symbol: TXNRD2
  hgvsc: ENST00000496729.1:n.513G>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000494454
  gene symbol: TXNRD2
  hgvsc: ENST00000494454.1:n.582G>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000484672
  gene symbol: TXNRD2
  hgvsc: ENST00000484672.1:n.138G>C
  variant of: http://identifiers.org/hgnc/18155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9646
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1872
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26805
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14162
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val170Leu
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

22-19903308-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19903308
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 19903308
    reference: chr 22
allele count: 1
allele frequency: 8.281299170213822e-6
allele num: 120754
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000491939
  gene symbol: TXNRD2
  hgvsc: ENST00000491939.1:n.498G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000334451
  ensembl transcript: ENST00000334363
  gene symbol: TXNRD2
  hgvsc: ENST00000334363.9:c.508G>A
  hgvsp: ENSP00000334451.9:p.Val170Ile
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439314
  ensembl transcript: ENST00000535882
  gene symbol: TXNRD2
  hgvsc: ENST00000535882.1:c.505G>A
  hgvsp: ENSP00000439314.1:p.Val169Ile
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383363
  ensembl transcript: ENST00000400519
  gene symbol: TXNRD2
  hgvsc: ENST00000400519.1:c.505G>A
  hgvsp: ENSP00000383363.1:p.Val169Ile
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383365
  ensembl transcript: ENST00000400521
  gene symbol: TXNRD2
  hgvsc: ENST00000400521.1:c.508G>A
  hgvsp: ENSP00000383365.1:p.Val170Ile
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439570
  ensembl transcript: ENST00000542719
  gene symbol: TXNRD2
  hgvsc: ENST00000542719.1:c.418G>A
  hgvsp: ENSP00000439570.1:p.Val140Ile
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383369
  ensembl transcript: ENST00000400525
  gene symbol: TXNRD2
  hgvsc: ENST00000400525.1:c.439G>A
  hgvsp: ENSP00000383369.2:p.Val147Ile
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000484672
  gene symbol: TXNRD2
  hgvsc: ENST00000484672.1:n.138G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000474308
  gene symbol: TXNRD2
  hgvsc: ENST00000474308.1:n.455G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000471835
  gene symbol: TXNRD2
  hgvsc: ENST00000471835.1:n.53G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000494454
  gene symbol: TXNRD2
  hgvsc: ENST00000494454.1:n.582G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383362
  ensembl transcript: ENST00000400518
  gene symbol: TXNRD2
  hgvsc: ENST00000400518.1:c.418G>A
  hgvsp: ENSP00000383362.1:p.Val140Ile
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000496729
  gene symbol: TXNRD2
  hgvsc: ENST00000496729.1:n.513G>A
  variant of: http://identifiers.org/hgnc/18155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9646
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1872
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26805
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val170Ile
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum

22-19903309-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19903309
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 19903309
    reference: chr 22
allele count: 4
allele frequency: 3.312519668085529e-5
allele num: 120754
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439314
  ensembl transcript: ENST00000535882
  gene symbol: TXNRD2
  hgvsc: ENST00000535882.1:c.504C>T
  hgvsp: ENST00000535882.1:c.504C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000496729
  gene symbol: TXNRD2
  hgvsc: ENST00000496729.1:n.512C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000474308
  gene symbol: TXNRD2
  hgvsc: ENST00000474308.1:n.454C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000484672
  gene symbol: TXNRD2
  hgvsc: ENST00000484672.1:n.137C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383369
  ensembl transcript: ENST00000400525
  gene symbol: TXNRD2
  hgvsc: ENST00000400525.1:c.438C>T
  hgvsp: ENST00000400525.1:c.438C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439570
  ensembl transcript: ENST00000542719
  gene symbol: TXNRD2
  hgvsc: ENST00000542719.1:c.417C>T
  hgvsp: ENST00000542719.1:c.417C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000491939
  gene symbol: TXNRD2
  hgvsc: ENST00000491939.1:n.497C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000334451
  ensembl transcript: ENST00000334363
  gene symbol: TXNRD2
  hgvsc: ENST00000334363.9:c.507C>T
  hgvsp: ENST00000334363.9:c.507C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383365
  ensembl transcript: ENST00000400521
  gene symbol: TXNRD2
  hgvsc: ENST00000400521.1:c.507C>T
  hgvsp: ENST00000400521.1:c.507C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383362
  ensembl transcript: ENST00000400518
  gene symbol: TXNRD2
  hgvsc: ENST00000400518.1:c.417C>T
  hgvsp: ENST00000400518.1:c.417C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000471835
  gene symbol: TXNRD2
  hgvsc: ENST00000471835.1:n.52C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000494454
  gene symbol: TXNRD2
  hgvsc: ENST00000494454.1:n.581C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383363
  ensembl transcript: ENST00000400519
  gene symbol: TXNRD2
  hgvsc: ENST00000400519.1:c.504C>T
  hgvsp: ENST00000400519.1:c.504C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18155
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14155
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1871
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26803
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9653
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly169Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: DP

22-19903311-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19903311
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 19903311
    reference: chr 22
allele count: 34
allele frequency: 2.815688352987942e-4
allele num: 120752
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383365
  ensembl transcript: ENST00000400521
  gene symbol: TXNRD2
  hgvsc: ENST00000400521.1:c.505G>A
  hgvsp: ENSP00000383365.1:p.Gly169Ser
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000496729
  gene symbol: TXNRD2
  hgvsc: ENST00000496729.1:n.510G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383363
  ensembl transcript: ENST00000400519
  gene symbol: TXNRD2
  hgvsc: ENST00000400519.1:c.502G>A
  hgvsp: ENSP00000383363.1:p.Gly168Ser
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000474308
  gene symbol: TXNRD2
  hgvsc: ENST00000474308.1:n.452G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000484672
  gene symbol: TXNRD2
  hgvsc: ENST00000484672.1:n.135G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439570
  ensembl transcript: ENST00000542719
  gene symbol: TXNRD2
  hgvsc: ENST00000542719.1:c.415G>A
  hgvsp: ENSP00000439570.1:p.Gly139Ser
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383369
  ensembl transcript: ENST00000400525
  gene symbol: TXNRD2
  hgvsc: ENST00000400525.1:c.436G>A
  hgvsp: ENSP00000383369.2:p.Gly146Ser
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439314
  ensembl transcript: ENST00000535882
  gene symbol: TXNRD2
  hgvsc: ENST00000535882.1:c.502G>A
  hgvsp: ENSP00000439314.1:p.Gly168Ser
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000334451
  ensembl transcript: ENST00000334363
  gene symbol: TXNRD2
  hgvsc: ENST00000334363.9:c.505G>A
  hgvsp: ENSP00000334451.9:p.Gly169Ser
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383362
  ensembl transcript: ENST00000400518
  gene symbol: TXNRD2
  hgvsc: ENST00000400518.1:c.415G>A
  hgvsp: ENSP00000383362.1:p.Gly139Ser
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000494454
  gene symbol: TXNRD2
  hgvsc: ENST00000494454.1:n.579G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000491939
  gene symbol: TXNRD2
  hgvsc: ENST00000491939.1:n.495G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000471835
  gene symbol: TXNRD2
  hgvsc: ENST00000471835.1:n.50G>A
  variant of: http://identifiers.org/hgnc/18155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1871
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9643
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 9.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 26820
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly169Ser
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

22-19903312-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19903312
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 19903312
    reference: chr 22
allele count: 6
allele frequency: 4.968944099378882e-5
allele num: 120750
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000334451
  ensembl transcript: ENST00000334363
  gene symbol: TXNRD2
  hgvsc: ENST00000334363.9:c.504C>T
  hgvsp: ENST00000334363.9:c.504C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383365
  ensembl transcript: ENST00000400521
  gene symbol: TXNRD2
  hgvsc: ENST00000400521.1:c.504C>T
  hgvsp: ENST00000400521.1:c.504C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383363
  ensembl transcript: ENST00000400519
  gene symbol: TXNRD2
  hgvsc: ENST00000400519.1:c.501C>T
  hgvsp: ENST00000400519.1:c.501C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383369
  ensembl transcript: ENST00000400525
  gene symbol: TXNRD2
  hgvsc: ENST00000400525.1:c.435C>T
  hgvsp: ENST00000400525.1:c.435C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000484672
  gene symbol: TXNRD2
  hgvsc: ENST00000484672.1:n.134C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383362
  ensembl transcript: ENST00000400518
  gene symbol: TXNRD2
  hgvsc: ENST00000400518.1:c.414C>T
  hgvsp: ENST00000400518.1:c.414C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439570
  ensembl transcript: ENST00000542719
  gene symbol: TXNRD2
  hgvsc: ENST00000542719.1:c.414C>T
  hgvsp: ENST00000542719.1:c.414C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000494454
  gene symbol: TXNRD2
  hgvsc: ENST00000494454.1:n.578C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000496729
  gene symbol: TXNRD2
  hgvsc: ENST00000496729.1:n.509C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000471835
  gene symbol: TXNRD2
  hgvsc: ENST00000471835.1:n.49C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439314
  ensembl transcript: ENST00000535882
  gene symbol: TXNRD2
  hgvsc: ENST00000535882.1:c.501C>T
  hgvsp: ENST00000535882.1:c.501C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000491939
  gene symbol: TXNRD2
  hgvsc: ENST00000491939.1:n.494C>T
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000474308
  gene symbol: TXNRD2
  hgvsc: ENST00000474308.1:n.451C>T
  variant of: http://identifiers.org/hgnc/18155
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14140
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1873
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26830
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Cys168Cys
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

22-19903318-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19903318
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 19903318
    reference: chr 22
allele count: 1
allele frequency: 8.281573498964803e-6
allele num: 120750
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000334451
  ensembl transcript: ENST00000334363
  gene symbol: TXNRD2
  hgvsc: ENST00000334363.9:c.498G>C
  hgvsp: ENST00000334363.9:c.498G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000484672
  gene symbol: TXNRD2
  hgvsc: ENST00000484672.1:n.128G>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000471835
  gene symbol: TXNRD2
  hgvsc: ENST00000471835.1:n.43G>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439570
  ensembl transcript: ENST00000542719
  gene symbol: TXNRD2
  hgvsc: ENST00000542719.1:c.408G>C
  hgvsp: ENST00000542719.1:c.408G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383362
  ensembl transcript: ENST00000400518
  gene symbol: TXNRD2
  hgvsc: ENST00000400518.1:c.408G>C
  hgvsp: ENST00000400518.1:c.408G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383363
  ensembl transcript: ENST00000400519
  gene symbol: TXNRD2
  hgvsc: ENST00000400519.1:c.495G>C
  hgvsp: ENST00000400519.1:c.495G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000491939
  gene symbol: TXNRD2
  hgvsc: ENST00000491939.1:n.488G>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383369
  ensembl transcript: ENST00000400525
  gene symbol: TXNRD2
  hgvsc: ENST00000400525.1:c.429G>C
  hgvsp: ENST00000400525.1:c.429G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000474308
  gene symbol: TXNRD2
  hgvsc: ENST00000474308.1:n.445G>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000496729
  gene symbol: TXNRD2
  hgvsc: ENST00000496729.1:n.503G>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383365
  ensembl transcript: ENST00000400521
  gene symbol: TXNRD2
  hgvsc: ENST00000400521.1:c.498G>C
  hgvsp: ENST00000400521.1:c.498G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000494454
  gene symbol: TXNRD2
  hgvsc: ENST00000494454.1:n.572G>C
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439314
  ensembl transcript: ENST00000535882
  gene symbol: TXNRD2
  hgvsc: ENST00000535882.1:c.495G>C
  hgvsp: ENST00000535882.1:c.495G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18155
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26842
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14152
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9652
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr166Thr
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: QD
site quality: MQ

22-19903326-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19903326
    reference: chr 22
  end: Position
    type: ExactPosition
    position: 19903326
    reference: chr 22
allele count: 4
allele frequency: 3.312629399585921e-5
allele num: 120750
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000474308
  gene symbol: TXNRD2
  hgvsc: ENST00000474308.1:n.437G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000484672
  gene symbol: TXNRD2
  hgvsc: ENST00000484672.1:n.120G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439570
  ensembl transcript: ENST00000542719
  gene symbol: TXNRD2
  hgvsc: ENST00000542719.1:c.400G>A
  hgvsp: ENSP00000439570.1:p.Glu134Lys
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383365
  ensembl transcript: ENST00000400521
  gene symbol: TXNRD2
  hgvsc: ENST00000400521.1:c.490G>A
  hgvsp: ENSP00000383365.1:p.Glu164Lys
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000439314
  ensembl transcript: ENST00000535882
  gene symbol: TXNRD2
  hgvsc: ENST00000535882.1:c.487G>A
  hgvsp: ENSP00000439314.1:p.Glu163Lys
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000334451
  ensembl transcript: ENST00000334363
  gene symbol: TXNRD2
  hgvsc: ENST00000334363.9:c.490G>A
  hgvsp: ENSP00000334451.9:p.Glu164Lys
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383362
  ensembl transcript: ENST00000400518
  gene symbol: TXNRD2
  hgvsc: ENST00000400518.1:c.400G>A
  hgvsp: ENSP00000383362.1:p.Glu134Lys
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000494454
  gene symbol: TXNRD2
  hgvsc: ENST00000494454.1:n.564G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000471835
  gene symbol: TXNRD2
  hgvsc: ENST00000471835.1:n.35G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383369
  ensembl transcript: ENST00000400525
  gene symbol: TXNRD2
  hgvsc: ENST00000400525.1:c.421G>A
  hgvsp: ENSP00000383369.2:p.Glu141Lys
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000491939
  gene symbol: TXNRD2
  hgvsc: ENST00000491939.1:n.480G>A
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184470
  ensembl protein: ENSP00000383363
  ensembl transcript: ENST00000400519
  gene symbol: TXNRD2
  hgvsc: ENST00000400519.1:c.487G>A
  hgvsp: ENSP00000383363.1:p.Glu163Lys
  variant of: http://identifiers.org/hgnc/18155
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000184470
  ensembl transcript: ENST00000496729
  gene symbol: TXNRD2
  hgvsc: ENST00000496729.1:n.495G>A
  variant of: http://identifiers.org/hgnc/18155
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26853
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9652
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1864
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu164Lys
num of homozygotes: 0
population: East Asian
reference allele: C

GenotypeDepth
all individuals: 570
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 617
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 405
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 639
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1186
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2226
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 890
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1148
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1997
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2494
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 639
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 33962
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8227
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 489
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 532
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 469
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 418
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1698
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 287
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6470
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5086
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8280
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8540
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14816
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 778
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.843936190659235e-4
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.616919445073246e-5
allele num: 61846
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.78e-1

DP
type: SiteQuality
SIO_000300: 1.714808e6

VQSLOD
type: SiteQuality
SIO_000300: 1.7e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.64e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 6.387e0

MQRankSum
type: SiteQuality
SIO_000300: 7.62e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.23e-1

QD
type: SiteQuality
SIO_000300: 1.313e1

GenotypeDepth
all individuals: 5176
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 592
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 639
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 664
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 413
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 503
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 639
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1148
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 890
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2494
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6470
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33962
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 489
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 418
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 469
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 287
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1997
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8227
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1698
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 532
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8280
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8540
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61846
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 778
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.749460043196545e-5
allele num: 14816
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
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MQ
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MQRankSum
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InbreedingCoeff
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SIO_000300: 3.2e-3

VQSLOD
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FS
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DP
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ClippingRankSum
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SIO_000300: -3.64e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.78e-1

QD
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SIO_000300: 1.313e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 3

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 780
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8320
num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.160900859066636e-4
allele num: 8614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 11
allele frequency: 1.768545612399113e-4
allele num: 62198
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5146
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 14884
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
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SIO_000300: 2.47e-1

DP
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VQSLOD
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MQ
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FS
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MQRankSum
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InbreedingCoeff
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SIO_000300: 1.9e-3

ClippingRankSum
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SIO_000300: 7.3e-2

BaseQRankSum
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SIO_000300: 7.89e-1

QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10500
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.714113065664025e-5
allele num: 14894
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 778
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 62294
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
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BaseQRankSum
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MQRankSum
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DP
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ReadPosRankSum
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SIO_000300: -5.12e-1

VQSLOD
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FS
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InbreedingCoeff
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SIO_000300: -3.0e-4

QD
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MQ
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SIO_000300: 6.0e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10552
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 784
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.201024327784891e-5
allele num: 62480
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8346
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8662
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5194
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.07e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.51e-1

ReadPosRankSum
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DP
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MQ
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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SIO_000300: 2.2e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 6.678242286630158e-5
allele num: 14974
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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DP
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FS
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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QD
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MQ
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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East Asian
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African
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allele frequency: 1.150218541522889e-4
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Latino
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South Asian
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Other
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ClippingRankSum
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MQRankSum
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DP
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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FS
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VQSLOD
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QD
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

African
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European (Finnish)
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South Asian
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European (Non-Finnish)
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Other
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East Asian
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VQSLOD
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FS
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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QD
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MQRankSum
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DP
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ClippingRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 11

African
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allele frequency: 0.0e0
allele num: 8708
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.752876310673423e-4
allele num: 62754
num of homozygotes: 0

Other
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South Asian
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MQ
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MQRankSum
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VQSLOD
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FS
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DP
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InbreedingCoeff
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ClippingRankSum
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ReadPosRankSum
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QD
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BaseQRankSum
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SIO_000300: -5.29e-1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8404
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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South Asian
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allele num: 15116
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European (Finnish)
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allele frequency: 0.0e0
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Other
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ClippingRankSum
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MQRankSum
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MQ
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InbreedingCoeff
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FS
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ReadPosRankSum
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BaseQRankSum
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QD
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VQSLOD
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 63286
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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VQSLOD
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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QD
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DP
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InbreedingCoeff
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SIO_000300: 1.0e-4

FS
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SIO_000300: 8.943e0

MQ
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SIO_000300: 6.0e1

ReadPosRankSum
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SIO_000300: 1.14e0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8412
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.579030475288173e-5
allele num: 63330
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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MQRankSum
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FS
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ClippingRankSum
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QD
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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DP
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SIO_000300: 1.777284e6

MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 63344
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European (Finnish)
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East Asian
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Other
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FS
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VQSLOD
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ReadPosRankSum
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MQ
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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DP
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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allele num: 10766
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East Asian
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European (Finnish)
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Other
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South Asian
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European (Non-Finnish)
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African
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VQSLOD
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InbreedingCoeff
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MQ
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MQRankSum
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DP
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ClippingRankSum
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FS
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BaseQRankSum
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ReadPosRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

East Asian
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Other
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European (Non-Finnish)
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European (Finnish)
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African
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South Asian
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ClippingRankSum
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ReadPosRankSum
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FS
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MQ
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BaseQRankSum
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InbreedingCoeff
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DP
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VQSLOD
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MQRankSum
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SIO_000300: 1.05e0

QD
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SIO_000300: 8.83e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8832
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5430
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8416
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.635393332454869e-4
allele num: 15178
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10758
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 806
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.62e-1

MQ
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SIO_000300: 6.0e1

FS
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QD
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SIO_000300: 9.630000000000001e0

ReadPosRankSum
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MQRankSum
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DP
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SIO_000300: 1.786947e6

VQSLOD
type: SiteQuality
SIO_000300: 5.679999999999999e-1

BaseQRankSum
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SIO_000300: -1.447e0

InbreedingCoeff
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SIO_000300: 2.2e-3

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.577088064597527e-5
allele num: 63408
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8400
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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VQSLOD
type: SiteQuality
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MQRankSum
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DP
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MQ
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SIO_000300: 6.0e1

BaseQRankSum
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FS
type: SiteQuality
SIO_000300: 1.6965e1

ClippingRankSum
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SIO_000300: -5.98e-1

ReadPosRankSum
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SIO_000300: 1.06e0

QD
type: SiteQuality
SIO_000300: 1.064e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8322
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5312
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.181572333046992e-5
allele num: 62862
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.767339e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
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ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
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InbreedingCoeff
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FS
type: SiteQuality
SIO_000300: 3.566e0

QD
type: SiteQuality
SIO_000300: 1.025e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.81e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5208
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62288
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 1
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allele num: 14932
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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QD
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SIO_000300: 6.01e0

FS
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ClippingRankSum
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MQ
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DP
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VQSLOD
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SIO_000300: -1.338e0

BaseQRankSum
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SIO_000300: 1.82e0

MQRankSum
type: SiteQuality
SIO_000300: 8.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.78e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 780
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.209448616727646e-5
allele num: 62316
num of homozygotes: 0

African
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allele frequency: 1.163873370577281e-4
allele num: 8592
num of homozygotes: 0

Latino
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num of homozygotes: 0

East Asian
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MQ
type: SiteQuality
SIO_000300: 5.924e1

ReadPosRankSum
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BaseQRankSum
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FS
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QD
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InbreedingCoeff
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SIO_000300: 1.2e-3

MQRankSum
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DP
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ClippingRankSum
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VQSLOD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 61876
num of homozygotes: 0

African
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East Asian
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allele count: 1
allele frequency: 1.220703125e-4
allele num: 8192
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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Other
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South Asian
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DP
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MQRankSum
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InbreedingCoeff
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QD
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FS
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MQ
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8076
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 1.189343482397717e-4
allele num: 8408
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 61050
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
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SIO_000300: -5.489e0

ReadPosRankSum
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SIO_000300: -9.27e-1

VQSLOD
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ClippingRankSum
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MQRankSum
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FS
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MQ
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QD
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InbreedingCoeff
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SIO_000300: -4.0e-4

DP
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SIO_000300: 1.714001e6

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7948
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.662068277764851e-5
allele num: 60166
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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Other
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Latino
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allele frequency: 0.0e0
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VQSLOD
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ReadPosRankSum
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QD
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MQRankSum
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ClippingRankSum
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FS
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InbreedingCoeff
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BaseQRankSum
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DP
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9668
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4824
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.388222538456326e-5
allele num: 59028
num of homozygotes: 0

Other
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allele count: 0
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num of homozygotes: 0

InbreedingCoeff
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DP
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SIO_000300: 1.632428e6

ReadPosRankSum
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SIO_000300: -4.15e-1

BaseQRankSum
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FS
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SIO_000300: 3.245e0

MQRankSum
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SIO_000300: 6.69e-1

QD
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MQ
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SIO_000300: 6.0e1

VQSLOD
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SIO_000300: -3.239e-1

ClippingRankSum
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SIO_000300: 5.99e-1

GenotypeDepth
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variant carriers: 2

GenotypeDepth
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variant carriers: 20

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7632
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 12
allele frequency: 1.275781416117372e-3
allele num: 9406
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 155
allele frequency: 1.935081148564295e-2
allele num: 8010
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.728130508415996e-5
allele num: 57866
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.584135e6

ReadPosRankSum
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VQSLOD
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BaseQRankSum
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SIO_000300: -1.806e0

MQ
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SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.95e-1

InbreedingCoeff
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SIO_000300: -1.7e-3

QD
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SIO_000300: 1.145e1

FS
type: SiteQuality
SIO_000300: 1.199e0

ClippingRankSum
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SIO_000300: 2.29e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 3.4615251479802e-5
allele num: 57778
num of homozygotes: 0

Other
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European (Finnish)
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African
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South Asian
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BaseQRankSum
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MQRankSum
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MQ
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InbreedingCoeff
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QD
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ClippingRankSum
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FS
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DP
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ReadPosRankSum
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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European (Non-Finnish)
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Latino
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European (Finnish)
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African
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Other
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BaseQRankSum
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MQRankSum
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DP
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VQSLOD
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MQ
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QD
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ReadPosRankSum
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FS
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ClippingRankSum
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InbreedingCoeff
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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East Asian
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European (Non-Finnish)
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South Asian
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Latino
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Other
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FS
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
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QD
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DP
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MQ
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ClippingRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 8852
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4396
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 698
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 55252
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7568
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.38121546961326e-4
allele num: 7240
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
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SIO_000300: 2.46e0

VQSLOD
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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QD
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FS
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SIO_000300: 1.5693e1

DP
type: SiteQuality
SIO_000300: 1.444822e6

ReadPosRankSum
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SIO_000300: 0.0e0

MQ
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SIO_000300: 6.0e1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.177068214804064e-4
allele num: 13780
num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.337613697164259e-4
allele num: 7476
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 8804
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4364
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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MQ
type: SiteQuality
SIO_000300: 5.89e1

QD
type: SiteQuality
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InbreedingCoeff
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SIO_000300: -5.0e-3

BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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SIO_000300: -5.23e-1

FS
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SIO_000300: 0.0e0

VQSLOD
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SIO_000300: 6.63e-1

MQRankSum
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SIO_000300: 3.82e-1

DP
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SIO_000300: 1.436296e6

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 736
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.712641544458882e-5
allele num: 53870
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.72e0

QD
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SIO_000300: 1.223e1

MQRankSum
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SIO_000300: 1.36e-1

DP
type: SiteQuality
SIO_000300: 1.39356e6

ReadPosRankSum
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BaseQRankSum
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SIO_000300: -2.488e0

FS
type: SiteQuality
SIO_000300: 1.546e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.75e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 214
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4180
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13524
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.369112814895947e-4
allele num: 7304
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.856320772229441e-5
allele num: 53870
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 682
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.4e-3

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.223e1

FS
type: SiteQuality
SIO_000300: 1.546e0

ClippingRankSum
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SIO_000300: 1.75e-1

MQ
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SIO_000300: 6.0e1

MQRankSum
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SIO_000300: 1.36e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.639999999999999e-1

DP
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SIO_000300: 1.39356e6

BaseQRankSum
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SIO_000300: -2.488e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6992
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.855769587647998e-5
allele num: 53886
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 7310
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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VQSLOD
type: SiteQuality
SIO_000300: -2.085e0

MQRankSum
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DP
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FS
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MQ
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InbreedingCoeff
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ClippingRankSum
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ReadPosRankSum
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SIO_000300: 5.79e-1

QD
type: SiteQuality
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BaseQRankSum
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SIO_000300: 1.61e0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 3

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 8380
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13376
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4062
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 670
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 5.644402634054563e-5
allele num: 53150
num of homozygotes: 0

InbreedingCoeff
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SIO_000300: -6.3e-3

BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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MQ
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VQSLOD
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DP
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SIO_000300: 1.374979e6

FS
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QD
type: SiteQuality
SIO_000300: 1.707e1

GenotypeDepth
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variant carriers: 2

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3948
num of homozygotes: 0

African
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allele count: 126
allele frequency: 1.800514432695056e-2
allele num: 6998
num of homozygotes: 0

South Asian
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 9
allele frequency: 1.102941176470588e-3
allele num: 8160
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 52348
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Other
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allele count: 0
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ReadPosRankSum
type: SiteQuality
SIO_000300: 2.71e-1

MQ
type: SiteQuality
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BaseQRankSum
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DP
type: SiteQuality
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MQRankSum
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FS
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VQSLOD
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ClippingRankSum
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SIO_000300: 1.77e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-3

QD
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SIO_000300: 1.072e1

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 6856
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 51420
num of homozygotes: 0

European (Finnish)
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allele frequency: 2.608242044861763e-4
allele num: 3834
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.2e-3

QD
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VQSLOD
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FS
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SIO_000300: 0.0e0

MQ
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BaseQRankSum
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ClippingRankSum
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SIO_000300: -3.4e-1

ReadPosRankSum
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DP
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SIO_000300: 1.338783e6

MQRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3758
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 50696
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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South Asian
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allele num: 12964
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.630000000000001e0

FS
type: SiteQuality
SIO_000300: 1.789e0

BaseQRankSum
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SIO_000300: -9.1e-1

MQRankSum
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SIO_000300: 4.06e-1

InbreedingCoeff
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SIO_000300: -8.200000000000001e-3

VQSLOD
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SIO_000300: 4.07e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.29e-1

DP
type: SiteQuality
SIO_000300: 1.331272e6

ClippingRankSum
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SIO_000300: -4.06e-1

GenotypeDepth
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GenotypeDepth
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variant carriers: 2

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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variant carriers: 130

GenotypeQuality
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GenotypeQuality
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variant carriers: 5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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variant carriers: 5

African
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allele count: 0
allele frequency: 0.0e0
allele num: 6712
num of homozygotes: 0

European (Finnish)
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allele count: 91
allele frequency: 2.437064809855383e-2
allele num: 3734
num of homozygotes: 1

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 7748
num of homozygotes: 0

European (Non-Finnish)
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allele count: 43
allele frequency: 8.492317415175574e-4
allele num: 50634
num of homozygotes: 0

Other
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allele count: 1
allele frequency: 1.567398119122257e-3
allele num: 638
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 1.544163063619518e-4
allele num: 12952
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VQSLOD
type: SiteQuality
SIO_000300: 4.05e0

DP
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MQ
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SIO_000300: 6.0e1

InbreedingCoeff
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SIO_000300: -4.3e-3

BaseQRankSum
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ClippingRankSum
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SIO_000300: 9.1e-2

QD
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FS
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SIO_000300: 1.382e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.01e-1

MQRankSum
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SIO_000300: 3.22e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 6356
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3458
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 12656
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.192696323005325e-5
allele num: 47702
num of homozygotes: 0

InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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MQ
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SIO_000300: 5.805e1

FS
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SIO_000300: 3.493e0

VQSLOD
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MQRankSum
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SIO_000300: 4.67e-1

DP
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SIO_000300: 1.311836e6

QD
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SIO_000300: 1.825e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 6966
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47214
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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East Asian
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MQRankSum
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SIO_000300: 9.6e-2

ClippingRankSum
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InbreedingCoeff
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MQ
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ReadPosRankSum
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BaseQRankSum
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DP
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QD
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VQSLOD
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FS
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.502268425322237e-5
allele num: 66566
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
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MQ
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QD
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MQRankSum
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VQSLOD
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DP
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ClippingRankSum
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FS
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InbreedingCoeff
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ReadPosRankSum
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GenotypeDepth
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variant carriers: 2

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66626
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6600
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Other
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allele count: 0
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South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele num: 9766
num of homozygotes: 0

East Asian
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ReadPosRankSum
type: SiteQuality
SIO_000300: 8.21e-1

FS
type: SiteQuality
SIO_000300: 1.54e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.646e0

QD
type: SiteQuality
SIO_000300: 1.387e1

DP
type: SiteQuality
SIO_000300: 1.895085e6

VQSLOD
type: SiteQuality
SIO_000300: -1.153e0

MQRankSum
type: SiteQuality
SIO_000300: -4.71e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -4.06e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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bin: 6.75e1
variant carriers: 0

GenotypeDepth
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 514
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.667013347200555e-5
allele num: 11538
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66622
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.51e-1

QD
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SIO_000300: 1.335e1

BaseQRankSum
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SIO_000300: 5.22e-1

MQ
type: SiteQuality
SIO_000300: 5.967e1

ReadPosRankSum
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DP
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SIO_000300: 1.897108e6

ClippingRankSum
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SIO_000300: -8.999999999999999e-3

FS
type: SiteQuality
SIO_000300: 3.067e0

MQRankSum
type: SiteQuality
SIO_000300: 1.07e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.4e-3

GenotypeDepth
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bin: 6.25e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9774
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500960614793468e-5
allele num: 66624
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.89866e6

InbreedingCoeff
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SIO_000300: 5.7e-3

ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 6.883e0

MQ
type: SiteQuality
SIO_000300: 5.932e1

MQRankSum
type: SiteQuality
SIO_000300: -1.92e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.78e-1

QD
type: SiteQuality
SIO_000300: 1.113e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.724e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.4e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 6230
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variant carriers: 0

GenotypeQuality
all individuals: 491
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9772
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.500690317546071e-5
allele num: 66636
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

FS
type: SiteQuality
SIO_000300: 1.127e0

QD
type: SiteQuality
SIO_000300: 3.26e0

MQRankSum
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ClippingRankSum
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SIO_000300: 2.42e-1

MQ
type: SiteQuality
SIO_000300: 5.395e1

DP
type: SiteQuality
SIO_000300: 1.906385e6

BaseQRankSum
type: SiteQuality
SIO_000300: 7.61e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.856e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.202e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500240038406145e-5
allele num: 66656
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
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FS
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SIO_000300: 0.0e0

ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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DP
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 174
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 820
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.999940001199976e-5
allele num: 66668
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
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MQRankSum
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DP
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BaseQRankSum
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MQ
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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QD
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499970000599988e-5
allele num: 66668
num of homozygotes: 0

Other
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South Asian
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African
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Latino
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Finnish)
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allele count: 0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.63e-1

BaseQRankSum
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InbreedingCoeff
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DP
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FS
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VQSLOD
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QD
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
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SIO_000300: -3.95e-1

MQ
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SIO_000300: 5.959e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 2

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
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allele frequency: 1.111111111111111e-3
allele num: 900
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European (Non-Finnish)
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allele count: 40
allele frequency: 5.999340072592015e-4
allele num: 66674
num of homozygotes: 0

South Asian
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QD
type: SiteQuality
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MQRankSum
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FS
type: SiteQuality
SIO_000300: 7.41e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.55e-1

BaseQRankSum
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SIO_000300: -1.64e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.13e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.3e-2

DP
type: SiteQuality
SIO_000300: 1.917062e6

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 2.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.499430216517723e-5
allele num: 66692
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.919292e6

InbreedingCoeff
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SIO_000300: 8.0e-4

ReadPosRankSum
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SIO_000300: 8.49e-1

ClippingRankSum
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SIO_000300: 9.81e-1

BaseQRankSum
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SIO_000300: 1.37e0

MQRankSum
type: SiteQuality
SIO_000300: 6.23e-1

MQ
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SIO_000300: 5.945e1

VQSLOD
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SIO_000300: -8.310999999999999e-1

FS
type: SiteQuality
SIO_000300: 1.3218e1

QD
type: SiteQuality
SIO_000300: 1.529e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 25

GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
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allele count: 24
allele frequency: 2.782931354359926e-3
allele num: 8624
num of homozygotes: 1

European (Non-Finnish)
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allele count: 2
allele frequency: 2.99868058054456e-5
allele num: 66696
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.61e0

ClippingRankSum
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SIO_000300: -2.8e-1

BaseQRankSum
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SIO_000300: 1.54e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
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SIO_000300: 1.74e-2

DP
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SIO_000300: 1.920674e6

MQ
type: SiteQuality
SIO_000300: 5.966e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.3e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.44e-1

QD
type: SiteQuality
SIO_000300: 1.261e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.499205421126803e-5
allele num: 66702
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.06134076857801e-5
allele num: 16498
num of homozygotes: 0

QD
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SIO_000300: 8.949999999999999e0

InbreedingCoeff
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MQRankSum
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FS
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SIO_000300: 7.068e0

BaseQRankSum
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SIO_000300: -3.22e-1

MQ
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SIO_000300: 6.0e1

VQSLOD
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SIO_000300: -9.574e-1

DP
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SIO_000300: 1.920648e6

ReadPosRankSum
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SIO_000300: 1.89e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.09e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66704
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.06134076857801e-5
allele num: 16498
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 900
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

InbreedingCoeff
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MQRankSum
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FS
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ClippingRankSum
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DP
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VQSLOD
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BaseQRankSum
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MQ
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QD
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ReadPosRankSum
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66724
num of homozygotes: 0

South Asian
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allele frequency: 1.21153380179307e-4
allele num: 16508
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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MQRankSum
type: SiteQuality
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BaseQRankSum
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FS
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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MQ
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ClippingRankSum
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DP
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498666187093487e-5
allele num: 66726
num of homozygotes: 0

European (Finnish)
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num of homozygotes: 0

InbreedingCoeff
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MQ
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ClippingRankSum
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DP
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ReadPosRankSum
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VQSLOD
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QD
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BaseQRankSum
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MQRankSum
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FS
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 900
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.289e0

VQSLOD
type: SiteQuality
SIO_000300: -1.512e0

DP
type: SiteQuality
SIO_000300: 1.92471e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.37e-1

QD
type: SiteQuality
SIO_000300: 6.63e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 7.92e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.739e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.612e0

GenotypeDepth
all individuals: 30
bin: 1.25e1
variant carriers: 1

GenotypeDepth
all individuals: 943
bin: 5.75e1
variant carriers: 38

GenotypeDepth
all individuals: 600
bin: 7.75e1
variant carriers: 46

GenotypeDepth
all individuals: 360
bin: 8.75e1
variant carriers: 32

GenotypeDepth
all individuals: 635
bin: 9.75e1
variant carriers: 226

GenotypeDepth
all individuals: 878
bin: 4.25e1
variant carriers: 35

GenotypeDepth
all individuals: 976
bin: 6.25e1
variant carriers: 54

GenotypeDepth
all individuals: 467
bin: 8.25e1
variant carriers: 32

GenotypeQuality
all individuals: 1287
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 459
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 743
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 12
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6215
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 300
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8311
bin: 9.75e1
variant carriers: 756

GenotypeQuality
all individuals: 41648
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1309
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 17
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 41
allele frequency: 3.542422671505098e-3
allele num: 11574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.049034887903129e-4
allele num: 66728
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.222222222222222e-3
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 737
allele frequency: 7.515806648990414e-2
allele num: 9806
num of homozygotes: 28

South Asian
type: Population
allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.48e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.07e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.59e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.97e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.11e-1

FS
type: SiteQuality
SIO_000300: 5.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.74e-2

QD
type: SiteQuality
SIO_000300: 1.469e1

MQ
type: SiteQuality
SIO_000300: 5.971e1

DP
type: SiteQuality
SIO_000300: 1.954598e6

GenotypeDepth
all individuals: 18
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 26784
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 916
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1872
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 935
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1318
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variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
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variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6305
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variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
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variant carriers: 0

GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7677
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 24
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 764
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 471
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 309
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1310
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42126
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9804
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66724
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211387038158692e-4
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

DP
type: SiteQuality
SIO_000300: 1.922918e6

MQRankSum
type: SiteQuality
SIO_000300: 7.86e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.41e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.79e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.71e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.78e-1

MQ
type: SiteQuality
SIO_000300: 5.967e1

QD
type: SiteQuality
SIO_000300: 1.179e1

GenotypeDepth
all individuals: 9648
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 917
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 560
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 14173
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 935
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 471
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42161
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6305
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 309
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1309
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 762
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7676
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1320
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9804
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159285879897983e-4
allele num: 8626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66726
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.1e-2

VQSLOD
type: SiteQuality
SIO_000300: 9.7e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.7e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.500000000000001e-2

MQRankSum
type: SiteQuality
SIO_000300: 9.54e-1

DP
type: SiteQuality
SIO_000300: 1.922918e6

FS
type: SiteQuality
SIO_000300: 2.906e0

QD
type: SiteQuality
SIO_000300: 1.283e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

MQ
type: SiteQuality
SIO_000300: 5.978e1

GenotypeDepth
all individuals: 560
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 440
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 440
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 196
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 782
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6306
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1320
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 309
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1307
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
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variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
all individuals: 6
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GenotypeQuality
all individuals: 42169
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 763
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 470
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7677
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66726
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9804
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.923059e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

VQSLOD
type: SiteQuality
SIO_000300: 4.18e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.0e0

QD
type: SiteQuality
SIO_000300: 1.109e1

FS
type: SiteQuality
SIO_000300: 3.542e0

MQRankSum
type: SiteQuality
SIO_000300: -2.35e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.6e0

MQ
type: SiteQuality
SIO_000300: 5.957e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.374e0

GenotypeDepth
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 782
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 333
bin: 8.75e1
variant carriers: 1

GenotypeDepth
all individuals: 440
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 14162
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1320
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1307
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42169
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 470
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 309
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6306
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7677
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 763
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9804
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66726
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159285879897983e-4
allele num: 8626
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.0e0

FS
type: SiteQuality
SIO_000300: 3.542e0

MQ
type: SiteQuality
SIO_000300: 5.957e1

DP
type: SiteQuality
SIO_000300: 1.923059e6

VQSLOD
type: SiteQuality
SIO_000300: 4.18e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

QD
type: SiteQuality
SIO_000300: 1.109e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.374e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.6e0

MQRankSum
type: SiteQuality
SIO_000300: -2.35e-1

GenotypeDepth
all individuals: 862
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 830
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 917
bin: 5.75e1
variant carriers: 1

GenotypeDepth
all individuals: 17
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 443
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 6303
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 763
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7677
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1320
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1307
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42167
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 469
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 309
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 5.994664748373947e-5
allele num: 66726
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9804
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.264e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.68e-1

FS
type: SiteQuality
SIO_000300: 1.745e0

VQSLOD
type: SiteQuality
SIO_000300: 3.86e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.3e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.43e-1

MQ
type: SiteQuality
SIO_000300: 5.969e1

QD
type: SiteQuality
SIO_000300: 1.284e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.72e-1

DP
type: SiteQuality
SIO_000300: 1.923327e6

GenotypeDepth
all individuals: 828
bin: 6.75e1
variant carriers: 1

GenotypeDepth
all individuals: 561
bin: 7.75e1
variant carriers: 2

GenotypeDepth
all individuals: 334
bin: 8.75e1
variant carriers: 2

GenotypeDepth
all individuals: 859
bin: 4.25e1
variant carriers: 1

GenotypeDepth
all individuals: 14151
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 760
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1307
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6307
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 468
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42181
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7679
bin: 9.75e1
variant carriers: 34

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1320
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66726
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159285879897983e-4
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 33
allele frequency: 3.365973072215422e-3
allele num: 9804
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.923354e6

BaseQRankSum
type: SiteQuality
SIO_000300: 8.63e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

FS
type: SiteQuality
SIO_000300: 1.098e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.99e-1

MQ
type: SiteQuality
SIO_000300: 5.951e1

VQSLOD
type: SiteQuality
SIO_000300: 3.86e0

QD
type: SiteQuality
SIO_000300: 1.209e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.19e-1

GenotypeDepth
all individuals: 559
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 915
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 932
bin: 6.25e1
variant carriers: 1

GenotypeDepth
all individuals: 861
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9662
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 466
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6300
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7655
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 1317
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 761
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1303
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42190
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997512064986062e-5
allele num: 66722
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.020199959192002e-4
allele num: 9802
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.728011059270779e-4
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.15e-1

QD
type: SiteQuality
SIO_000300: 1.067e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

MQ
type: SiteQuality
SIO_000300: 5.988e1

VQSLOD
type: SiteQuality
SIO_000300: 2.5e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.012e0

MQRankSum
type: SiteQuality
SIO_000300: 4.75e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

DP
type: SiteQuality
SIO_000300: 1.922252e6

GenotypeDepth
all individuals: 1867
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 861
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 194
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 932
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 711
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1317
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42222
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6308
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 467
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7649
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 305
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 759
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1304
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9804
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498666187093487e-5
allele num: 66726
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.23e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.165e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.590000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.2e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 5.0e-3

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

DP
type: SiteQuality
SIO_000300: 1.921701e6

FS
type: SiteQuality
SIO_000300: 3.185e0

QD
type: SiteQuality
SIO_000300: 1.046e1

MQ
type: SiteQuality
SIO_000300: 5.951e1

GenotypeDepth
all individuals: 439
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 14143
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 437
bin: 9.75e1
variant carriers: 4

GenotypeDepth
all individuals: 860
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 559
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7648
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1315
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 759
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1305
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42227
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 467
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6300
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0