X-49114787-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049114787
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049114787
    reference: chr 0
allele count: 12
allele frequency: 8.729812309035355e-4
allele num: 13746
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365380
  ensembl transcript: ENST00000376207
  gene symbol: FOXP3
  hgvsc: ENST00000376207.4:c.176C>G
  hgvsp: ENSP00000365380.4:p.Ser59Cys
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000428952
  ensembl transcript: ENST00000518685
  gene symbol: FOXP3
  hgvsc: ENST00000518685.1:c.176C>G
  hgvsp: ENSP00000428952.1:p.Ser59Cys
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000451208
  ensembl transcript: ENST00000557224
  gene symbol: FOXP3
  hgvsc: ENST00000557224.1:c.176C>G
  hgvsp: ENSP00000451208.1:p.Ser59Cys
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365372
  ensembl transcript: ENST00000376199
  gene symbol: FOXP3
  hgvsc: ENST00000376199.2:c.176C>G
  hgvsp: ENSP00000365372.2:p.Ser59Cys
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365369
  ensembl transcript: ENST00000376197
  gene symbol: FOXP3
  hgvsc: ENST00000376197.1:c.131C>G
  hgvsp: ENSP00000365369.1:p.Ser44Cys
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000396415
  ensembl transcript: ENST00000455775
  gene symbol: FOXP3
  hgvsc: ENST00000455775.2:c.176C>G
  hgvsp: ENSP00000396415.2:p.Ser59Cys
  variant of: http://identifiers.org/hgnc/6106
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22083
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1802
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2293
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4707
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1860
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2009
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20043
  bin: 7.5e0
  variant carriers: 2
hgvs: p.Ser59Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum

X-49114789-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049114789
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049114789
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 13773
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000451208
  ensembl transcript: ENST00000557224
  gene symbol: FOXP3
  hgvsc: ENST00000557224.1:c.174T>C
  hgvsp: ENST00000557224.1:c.174T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000428952
  ensembl transcript: ENST00000518685
  gene symbol: FOXP3
  hgvsc: ENST00000518685.1:c.174T>C
  hgvsp: ENST00000518685.1:c.174T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365372
  ensembl transcript: ENST00000376199
  gene symbol: FOXP3
  hgvsc: ENST00000376199.2:c.174T>C
  hgvsp: ENST00000376199.2:c.174T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365380
  ensembl transcript: ENST00000376207
  gene symbol: FOXP3
  hgvsc: ENST00000376207.4:c.174T>C
  hgvsp: ENST00000376207.4:c.174T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000396415
  ensembl transcript: ENST00000455775
  gene symbol: FOXP3
  hgvsc: ENST00000455775.2:c.174T>C
  hgvsp: ENST00000455775.2:c.174T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365369
  ensembl transcript: ENST00000376197
  gene symbol: FOXP3
  hgvsc: ENST00000376197.1:c.129T>C
  hgvsp: ENST00000376197.1:c.129T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
canonical: true
consequence: synonymous
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2297
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22660
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4678
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1848
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 752
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1917
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2016
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20602
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5965
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ser58Ser
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
reference allele: A
site quality: FS
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

X-49114789-AGAG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049114789
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049114786
    reference: chr 0
allele count: 2
allele frequency: 1.452116459740071e-4
allele num: 13773
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365369
  ensembl transcript: ENST00000376197
  gene symbol: FOXP3
  hgvsc: ENST00000376197.1:c.126_128delCTC
  hgvsp: ENSP00000365369.1:p.Ser45del
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000428952
  ensembl transcript: ENST00000518685
  gene symbol: FOXP3
  hgvsc: ENST00000518685.1:c.171_173delCTC
  hgvsp: ENSP00000428952.1:p.Ser60del
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000451208
  ensembl transcript: ENST00000557224
  gene symbol: FOXP3
  hgvsc: ENST00000557224.1:c.171_173delCTC
  hgvsp: ENSP00000451208.1:p.Ser60del
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000396415
  ensembl transcript: ENST00000455775
  gene symbol: FOXP3
  hgvsc: ENST00000455775.2:c.171_173delCTC
  hgvsp: ENSP00000396415.2:p.Ser60del
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365372
  ensembl transcript: ENST00000376199
  gene symbol: FOXP3
  hgvsc: ENST00000376199.2:c.171_173delCTC
  hgvsp: ENSP00000365372.2:p.Ser60del
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365380
  ensembl transcript: ENST00000376207
  gene symbol: FOXP3
  hgvsc: ENST00000376207.4:c.171_173delCTC
  hgvsp: ENSP00000365380.4:p.Ser60del
  variant of: http://identifiers.org/hgnc/6106
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4678
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22660
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1848
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 45
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2297
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1917
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 1
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20602
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser60del
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
reference allele: AGAG
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: QD

X-49114798-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049114798
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049114798
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 13754
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000451208
  ensembl transcript: ENST00000557224
  gene symbol: FOXP3
  hgvsc: ENST00000557224.1:c.165T>C
  hgvsp: ENST00000557224.1:c.165T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365369
  ensembl transcript: ENST00000376197
  gene symbol: FOXP3
  hgvsc: ENST00000376197.1:c.120T>C
  hgvsp: ENST00000376197.1:c.120T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000428952
  ensembl transcript: ENST00000518685
  gene symbol: FOXP3
  hgvsc: ENST00000518685.1:c.165T>C
  hgvsp: ENST00000518685.1:c.165T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365380
  ensembl transcript: ENST00000376207
  gene symbol: FOXP3
  hgvsc: ENST00000376207.4:c.165T>C
  hgvsp: ENST00000376207.4:c.165T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000396415
  ensembl transcript: ENST00000455775
  gene symbol: FOXP3
  hgvsc: ENST00000455775.2:c.165T>C
  hgvsp: ENST00000455775.2:c.165T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365372
  ensembl transcript: ENST00000376199
  gene symbol: FOXP3
  hgvsc: ENST00000376199.2:c.165T>C
  hgvsp: ENST00000376199.2:c.165T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4481
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2320
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2367
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22628
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2091
  bin: 2.25e1
  variant carriers: 0
hgvs: p.His55His
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: Latino
population: South Asian
population: European (Finnish)
reference allele: A
site quality: QD
site quality: DP
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD

X-49114808-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049114808
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049114808
    reference: chr 0
allele count: 21
allele frequency: 1.523947750362845e-3
allele num: 13780
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365380
  ensembl transcript: ENST00000376207
  gene symbol: FOXP3
  hgvsc: ENST00000376207.4:c.155G>T
  hgvsp: ENSP00000365380.4:p.Gly52Val
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365369
  ensembl transcript: ENST00000376197
  gene symbol: FOXP3
  hgvsc: ENST00000376197.1:c.110G>T
  hgvsp: ENSP00000365369.1:p.Gly37Val
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000428952
  ensembl transcript: ENST00000518685
  gene symbol: FOXP3
  hgvsc: ENST00000518685.1:c.155G>T
  hgvsp: ENSP00000428952.1:p.Gly52Val
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000451208
  ensembl transcript: ENST00000557224
  gene symbol: FOXP3
  hgvsc: ENST00000557224.1:c.155G>T
  hgvsp: ENSP00000451208.1:p.Gly52Val
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000396415
  ensembl transcript: ENST00000455775
  gene symbol: FOXP3
  hgvsc: ENST00000455775.2:c.155G>T
  hgvsp: ENSP00000396415.2:p.Gly52Val
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365372
  ensembl transcript: ENST00000376199
  gene symbol: FOXP3
  hgvsc: ENST00000376199.2:c.155G>T
  hgvsp: ENSP00000365372.2:p.Gly52Val
  variant of: http://identifiers.org/hgnc/6106
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4362
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 27802
  bin: 2.5e0
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 2646
  bin: 7.5e0
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 2483
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
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  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 2.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 9.75e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 25094
  bin: 7.5e0
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 1.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 43
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2624
  bin: 2.5e0
  variant carriers: 1
hgvs: p.Gly52Val
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: African
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum

X-49114820-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049114820
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049114820
    reference: chr 0
allele count: 1
allele frequency: 7.192692224699705e-5
allele num: 13903
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365369
  ensembl transcript: ENST00000376197
  gene symbol: FOXP3
  hgvsc: ENST00000376197.1:c.98G>A
  hgvsp: ENSP00000365369.1:p.Arg33Gln
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365372
  ensembl transcript: ENST00000376199
  gene symbol: FOXP3
  hgvsc: ENST00000376199.2:c.143G>A
  hgvsp: ENSP00000365372.2:p.Arg48Gln
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000428952
  ensembl transcript: ENST00000518685
  gene symbol: FOXP3
  hgvsc: ENST00000518685.1:c.143G>A
  hgvsp: ENSP00000428952.1:p.Arg48Gln
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365380
  ensembl transcript: ENST00000376207
  gene symbol: FOXP3
  hgvsc: ENST00000376207.4:c.143G>A
  hgvsp: ENSP00000365380.4:p.Arg48Gln
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000451208
  ensembl transcript: ENST00000557224
  gene symbol: FOXP3
  hgvsc: ENST00000557224.1:c.143G>A
  hgvsp: ENSP00000451208.1:p.Arg48Gln
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000396415
  ensembl transcript: ENST00000455775
  gene symbol: FOXP3
  hgvsc: ENST00000455775.2:c.143G>A
  hgvsp: ENSP00000396415.2:p.Arg48Gln
  variant of: http://identifiers.org/hgnc/6106
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4521
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30361
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3877
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2677
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 496
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2524
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 86
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6287
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg48Gln
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

X-49114832-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049114832
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049114832
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 13829
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000428952
  ensembl transcript: ENST00000518685
  gene symbol: FOXP3
  hgvsc: ENST00000518685.1:c.131C>G
  hgvsp: ENSP00000428952.1:p.Thr44Ser
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365369
  ensembl transcript: ENST00000376197
  gene symbol: FOXP3
  hgvsc: ENST00000376197.1:c.86C>G
  hgvsp: ENSP00000365369.1:p.Thr29Ser
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365372
  ensembl transcript: ENST00000376199
  gene symbol: FOXP3
  hgvsc: ENST00000376199.2:c.131C>G
  hgvsp: ENSP00000365372.2:p.Thr44Ser
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000451208
  ensembl transcript: ENST00000557224
  gene symbol: FOXP3
  hgvsc: ENST00000557224.1:c.131C>G
  hgvsp: ENSP00000451208.1:p.Thr44Ser
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365380
  ensembl transcript: ENST00000376207
  gene symbol: FOXP3
  hgvsc: ENST00000376207.4:c.131C>G
  hgvsp: ENSP00000365380.4:p.Thr44Ser
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000396415
  ensembl transcript: ENST00000455775
  gene symbol: FOXP3
  hgvsc: ENST00000455775.2:c.131C>G
  hgvsp: ENSP00000396415.2:p.Thr44Ser
  variant of: http://identifiers.org/hgnc/6106
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4488
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6010
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32129
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2643
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 896
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2535
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 691
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6203
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 771
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Thr44Ser
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
reference allele: G
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

X-49114833-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049114833
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049114833
    reference: chr 0
allele count: 1
allele frequency: 7.220216606498195e-5
allele num: 13850
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000451208
  ensembl transcript: ENST00000557224
  gene symbol: FOXP3
  hgvsc: ENST00000557224.1:c.130A>G
  hgvsp: ENSP00000451208.1:p.Thr44Ala
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365372
  ensembl transcript: ENST00000376199
  gene symbol: FOXP3
  hgvsc: ENST00000376199.2:c.130A>G
  hgvsp: ENSP00000365372.2:p.Thr44Ala
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365369
  ensembl transcript: ENST00000376197
  gene symbol: FOXP3
  hgvsc: ENST00000376197.1:c.85A>G
  hgvsp: ENSP00000365369.1:p.Thr29Ala
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000428952
  ensembl transcript: ENST00000518685
  gene symbol: FOXP3
  hgvsc: ENST00000518685.1:c.130A>G
  hgvsp: ENSP00000428952.1:p.Thr44Ala
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365380
  ensembl transcript: ENST00000376207
  gene symbol: FOXP3
  hgvsc: ENST00000376207.4:c.130A>G
  hgvsp: ENSP00000365380.4:p.Thr44Ala
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000396415
  ensembl transcript: ENST00000455775
  gene symbol: FOXP3
  hgvsc: ENST00000455775.2:c.130A>G
  hgvsp: ENSP00000396415.2:p.Thr44Ala
  variant of: http://identifiers.org/hgnc/6106
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32165
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6193
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4482
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2653
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5316
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2541
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 683
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29628
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Thr44Ala
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: T
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

X-49114837-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049114837
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049114837
    reference: chr 0
allele count: 1
allele frequency: 7.227522405319457e-5
allele num: 13836
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365380
  ensembl transcript: ENST00000376207
  gene symbol: FOXP3
  hgvsc: ENST00000376207.4:c.126G>A
  hgvsp: ENST00000376207.4:c.126G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365369
  ensembl transcript: ENST00000376197
  gene symbol: FOXP3
  hgvsc: ENST00000376197.1:c.81G>A
  hgvsp: ENST00000376197.1:c.81G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000451208
  ensembl transcript: ENST00000557224
  gene symbol: FOXP3
  hgvsc: ENST00000557224.1:c.126G>A
  hgvsp: ENST00000557224.1:c.126G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000428952
  ensembl transcript: ENST00000518685
  gene symbol: FOXP3
  hgvsc: ENST00000518685.1:c.126G>A
  hgvsp: ENST00000518685.1:c.126G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000396415
  ensembl transcript: ENST00000455775
  gene symbol: FOXP3
  hgvsc: ENST00000455775.2:c.126G>A
  hgvsp: ENST00000455775.2:c.126G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365372
  ensembl transcript: ENST00000376199
  gene symbol: FOXP3
  hgvsc: ENST00000376199.2:c.126G>A
  hgvsp: ENST00000376199.2:c.126G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7020
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2635
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32374
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4460
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 513
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genotype depth: GenotypeDepth
  all individuals: 56
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 29722
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 1140
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 192
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 767
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2611
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gly42Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: DP

X-49114839-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049114839
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049114839
    reference: chr 0
allele count: 2
allele frequency: 1.442793247727601e-4
allele num: 13862
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000396415
  ensembl transcript: ENST00000455775
  gene symbol: FOXP3
  hgvsc: ENST00000455775.2:c.124G>A
  hgvsp: ENSP00000396415.2:p.Gly42Arg
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365372
  ensembl transcript: ENST00000376199
  gene symbol: FOXP3
  hgvsc: ENST00000376199.2:c.124G>A
  hgvsp: ENSP00000365372.2:p.Gly42Arg
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365380
  ensembl transcript: ENST00000376207
  gene symbol: FOXP3
  hgvsc: ENST00000376207.4:c.124G>A
  hgvsp: ENSP00000365380.4:p.Gly42Arg
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365369
  ensembl transcript: ENST00000376197
  gene symbol: FOXP3
  hgvsc: ENST00000376197.1:c.79G>A
  hgvsp: ENSP00000365369.1:p.Gly27Arg
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000451208
  ensembl transcript: ENST00000557224
  gene symbol: FOXP3
  hgvsc: ENST00000557224.1:c.124G>A
  hgvsp: ENSP00000451208.1:p.Gly42Arg
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000428952
  ensembl transcript: ENST00000518685
  gene symbol: FOXP3
  hgvsc: ENST00000518685.1:c.124G>A
  hgvsp: ENSP00000428952.1:p.Gly42Arg
  variant of: http://identifiers.org/hgnc/6106
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32483
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7547
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4467
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2640
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1059
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2259
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 3.75e1
  variant carriers: 1
hgvs: p.Gly42Arg
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

X-49114844-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049114844
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049114844
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 13808
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365380
  ensembl transcript: ENST00000376207
  gene symbol: FOXP3
  hgvsc: ENST00000376207.4:c.119G>A
  hgvsp: ENSP00000365380.4:p.Gly40Asp
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000396415
  ensembl transcript: ENST00000455775
  gene symbol: FOXP3
  hgvsc: ENST00000455775.2:c.119G>A
  hgvsp: ENSP00000396415.2:p.Gly40Asp
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000451208
  ensembl transcript: ENST00000557224
  gene symbol: FOXP3
  hgvsc: ENST00000557224.1:c.119G>A
  hgvsp: ENSP00000451208.1:p.Gly40Asp
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000428952
  ensembl transcript: ENST00000518685
  gene symbol: FOXP3
  hgvsc: ENST00000518685.1:c.119G>A
  hgvsp: ENSP00000428952.1:p.Gly40Asp
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365369
  ensembl transcript: ENST00000376197
  gene symbol: FOXP3
  hgvsc: ENST00000376197.1:c.74G>A
  hgvsp: ENSP00000365369.1:p.Gly25Asp
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365372
  ensembl transcript: ENST00000376199
  gene symbol: FOXP3
  hgvsc: ENST00000376199.2:c.119G>A
  hgvsp: ENSP00000365372.2:p.Gly40Asp
  variant of: http://identifiers.org/hgnc/6106
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8769
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2617
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4465
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32474
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 871
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2559
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7196
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29890
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6074
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gly40Asp
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP

X-49114847-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049114847
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049114847
    reference: chr 0
allele count: 1
allele frequency: 7.179266278986288e-5
allele num: 13929
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365380
  ensembl transcript: ENST00000376207
  gene symbol: FOXP3
  hgvsc: ENST00000376207.4:c.116G>A
  hgvsp: ENSP00000365380.4:p.Arg39Gln
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365369
  ensembl transcript: ENST00000376197
  gene symbol: FOXP3
  hgvsc: ENST00000376197.1:c.71G>A
  hgvsp: ENSP00000365369.1:p.Arg24Gln
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000428952
  ensembl transcript: ENST00000518685
  gene symbol: FOXP3
  hgvsc: ENST00000518685.1:c.116G>A
  hgvsp: ENSP00000428952.1:p.Arg39Gln
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000396415
  ensembl transcript: ENST00000455775
  gene symbol: FOXP3
  hgvsc: ENST00000455775.2:c.116G>A
  hgvsp: ENSP00000396415.2:p.Arg39Gln
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365372
  ensembl transcript: ENST00000376199
  gene symbol: FOXP3
  hgvsc: ENST00000376199.2:c.116G>A
  hgvsp: ENSP00000365372.2:p.Arg39Gln
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000451208
  ensembl transcript: ENST00000557224
  gene symbol: FOXP3
  hgvsc: ENST00000557224.1:c.116G>A
  hgvsp: ENSP00000451208.1:p.Arg39Gln
  variant of: http://identifiers.org/hgnc/6106
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32382
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genotype depth: GenotypeDepth
  all individuals: 56
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 9778
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 1.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 126
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genotype depth: GenotypeDepth
  all individuals: 19
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genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 892
  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 155
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6187
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 1113
  bin: 1.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 173
  bin: 7.75e1
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 253
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2206
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg39Gln
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: DP
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

X-49114851-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049114851
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049114851
    reference: chr 0
allele count: 3
allele frequency: 2.114313905137783e-4
allele num: 14189
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365372
  ensembl transcript: ENST00000376199
  gene symbol: FOXP3
  hgvsc: ENST00000376199.2:c.112G>T
  hgvsp: ENSP00000365372.2:p.Ala38Ser
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365369
  ensembl transcript: ENST00000376197
  gene symbol: FOXP3
  hgvsc: ENST00000376197.1:c.67G>T
  hgvsp: ENSP00000365369.1:p.Ala23Ser
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000428952
  ensembl transcript: ENST00000518685
  gene symbol: FOXP3
  hgvsc: ENST00000518685.1:c.112G>T
  hgvsp: ENSP00000428952.1:p.Ala38Ser
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000451208
  ensembl transcript: ENST00000557224
  gene symbol: FOXP3
  hgvsc: ENST00000557224.1:c.112G>T
  hgvsp: ENSP00000451208.1:p.Ala38Ser
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000396415
  ensembl transcript: ENST00000455775
  gene symbol: FOXP3
  hgvsc: ENST00000455775.2:c.112G>T
  hgvsp: ENSP00000396415.2:p.Ala38Ser
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365380
  ensembl transcript: ENST00000376207
  gene symbol: FOXP3
  hgvsc: ENST00000376207.4:c.112G>T
  hgvsp: ENSP00000365380.4:p.Ala38Ser
  variant of: http://identifiers.org/hgnc/6106
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
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  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 27
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genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31803
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
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genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
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genotype depth: GenotypeDepth
  all individuals: 19
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genotype depth: GenotypeDepth
  all individuals: 2620
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 902
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  variant carriers: 0
hgvs: p.Ala38Ser
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum

X-49114858-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049114858
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049114858
    reference: chr 0
allele count: 1
allele frequency: 6.787023211619383e-5
allele num: 14734
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365372
  ensembl transcript: ENST00000376199
  gene symbol: FOXP3
  hgvsc: ENST00000376199.2:c.105G>A
  hgvsp: ENST00000376199.2:c.105G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000451208
  ensembl transcript: ENST00000557224
  gene symbol: FOXP3
  hgvsc: ENST00000557224.1:c.105G>A
  hgvsp: ENST00000557224.1:c.105G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000396415
  ensembl transcript: ENST00000455775
  gene symbol: FOXP3
  hgvsc: ENST00000455775.2:c.105G>A
  hgvsp: ENST00000455775.2:c.105G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365380
  ensembl transcript: ENST00000376207
  gene symbol: FOXP3
  hgvsc: ENST00000376207.4:c.105G>A
  hgvsp: ENST00000376207.4:c.105G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365369
  ensembl transcript: ENST00000376197
  gene symbol: FOXP3
  hgvsc: ENST00000376197.1:c.60G>A
  hgvsp: ENST00000376197.1:c.60G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000428952
  ensembl transcript: ENST00000518685
  gene symbol: FOXP3
  hgvsc: ENST00000518685.1:c.105G>A
  hgvsp: ENST00000518685.1:c.105G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 46
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1087
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genotype quality: GenotypeQuality
  all individuals: 13728
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Leu35Leu
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: DP

X-49114860-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049114860
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049114860
    reference: chr 0
allele count: 2
allele frequency: 1.34147159433899e-4
allele num: 14909
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000451208
  ensembl transcript: ENST00000557224
  gene symbol: FOXP3
  hgvsc: ENST00000557224.1:c.103C>T
  hgvsp: ENST00000557224.1:c.103C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000428952
  ensembl transcript: ENST00000518685
  gene symbol: FOXP3
  hgvsc: ENST00000518685.1:c.103C>T
  hgvsp: ENST00000518685.1:c.103C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365372
  ensembl transcript: ENST00000376199
  gene symbol: FOXP3
  hgvsc: ENST00000376199.2:c.103C>T
  hgvsp: ENST00000376199.2:c.103C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365380
  ensembl transcript: ENST00000376207
  gene symbol: FOXP3
  hgvsc: ENST00000376207.4:c.103C>T
  hgvsp: ENST00000376207.4:c.103C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365369
  ensembl transcript: ENST00000376197
  gene symbol: FOXP3
  hgvsc: ENST00000376197.1:c.58C>T
  hgvsp: ENST00000376197.1:c.58C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000396415
  ensembl transcript: ENST00000455775
  gene symbol: FOXP3
  hgvsc: ENST00000455775.2:c.103C>T
  hgvsp: ENST00000455775.2:c.103C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4637
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 26
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
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  variant carriers: 0
hgvs: p.Leu35Leu
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP

X-49114894-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049114894
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049114894
    reference: chr 0
allele count: 1
allele frequency: 5.640794223826715e-5
allele num: 17728
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365372
  ensembl transcript: ENST00000376199
  gene symbol: FOXP3
  hgvsc: ENST00000376199.2:c.69G>A
  hgvsp: ENST00000376199.2:c.69G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000451208
  ensembl transcript: ENST00000557224
  gene symbol: FOXP3
  hgvsc: ENST00000557224.1:c.69G>A
  hgvsp: ENST00000557224.1:c.69G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365369
  ensembl transcript: ENST00000376197
  gene symbol: FOXP3
  hgvsc: ENST00000376197.1:c.24G>A
  hgvsp: ENST00000376197.1:c.24G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000428952
  ensembl transcript: ENST00000518685
  gene symbol: FOXP3
  hgvsc: ENST00000518685.1:c.69G>A
  hgvsp: ENST00000518685.1:c.69G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365380
  ensembl transcript: ENST00000376207
  gene symbol: FOXP3
  hgvsc: ENST00000376207.4:c.69G>A
  hgvsp: ENST00000376207.4:c.69G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000396415
  ensembl transcript: ENST00000455775
  gene symbol: FOXP3
  hgvsc: ENST00000455775.2:c.69G>A
  hgvsp: ENST00000455775.2:c.69G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4312
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3323
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2192
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21735
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25005
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2185
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1217
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 819
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1076
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 712
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Ser23Ser
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: Other
population: East Asian
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

X-49114895-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049114895
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049114895
    reference: chr 0
allele count: 2
allele frequency: 1.113957892391668e-4
allele num: 17954
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000428952
  ensembl transcript: ENST00000518685
  gene symbol: FOXP3
  hgvsc: ENST00000518685.1:c.68C>T
  hgvsp: ENSP00000428952.1:p.Ser23Leu
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000451208
  ensembl transcript: ENST00000557224
  gene symbol: FOXP3
  hgvsc: ENST00000557224.1:c.68C>T
  hgvsp: ENSP00000451208.1:p.Ser23Leu
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365369
  ensembl transcript: ENST00000376197
  gene symbol: FOXP3
  hgvsc: ENST00000376197.1:c.23C>T
  hgvsp: ENSP00000365369.1:p.Ser8Leu
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365372
  ensembl transcript: ENST00000376199
  gene symbol: FOXP3
  hgvsc: ENST00000376199.2:c.68C>T
  hgvsp: ENSP00000365372.2:p.Ser23Leu
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000396415
  ensembl transcript: ENST00000455775
  gene symbol: FOXP3
  hgvsc: ENST00000455775.2:c.68C>T
  hgvsp: ENSP00000396415.2:p.Ser23Leu
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365380
  ensembl transcript: ENST00000376207
  gene symbol: FOXP3
  hgvsc: ENST00000376207.4:c.68C>T
  hgvsp: ENSP00000365380.4:p.Ser23Leu
  variant of: http://identifiers.org/hgnc/6106
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4286
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2150
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25483
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3381
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 46
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5440
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1104
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genotype quality: GenotypeQuality
  all individuals: 38
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 162
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20564
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser23Leu
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

X-49114898-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049114898
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049114898
    reference: chr 0
allele count: 1
allele frequency: 5.430355688297583e-5
allele num: 18415
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000428952
  ensembl transcript: ENST00000518685
  gene symbol: FOXP3
  hgvsc: ENST00000518685.1:c.65C>T
  hgvsp: ENSP00000428952.1:p.Ala22Val
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365369
  ensembl transcript: ENST00000376197
  gene symbol: FOXP3
  hgvsc: ENST00000376197.1:c.20C>T
  hgvsp: ENSP00000365369.1:p.Ala7Val
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000451208
  ensembl transcript: ENST00000557224
  gene symbol: FOXP3
  hgvsc: ENST00000557224.1:c.65C>T
  hgvsp: ENSP00000451208.1:p.Ala22Val
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365372
  ensembl transcript: ENST00000376199
  gene symbol: FOXP3
  hgvsc: ENST00000376199.2:c.65C>T
  hgvsp: ENSP00000365372.2:p.Ala22Val
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365380
  ensembl transcript: ENST00000376207
  gene symbol: FOXP3
  hgvsc: ENST00000376207.4:c.65C>T
  hgvsp: ENSP00000365380.4:p.Ala22Val
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000396415
  ensembl transcript: ENST00000455775
  gene symbol: FOXP3
  hgvsc: ENST00000455775.2:c.65C>T
  hgvsp: ENSP00000396415.2:p.Ala22Val
  variant of: http://identifiers.org/hgnc/6106
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3549
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 853
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
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genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1918
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24978
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 995
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5531
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ala22Val
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Other
population: East Asian
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: DP

X-49114902-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049114902
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049114902
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 18757
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000428952
  ensembl transcript: ENST00000518685
  gene symbol: FOXP3
  hgvsc: ENST00000518685.1:c.61G>C
  hgvsp: ENSP00000428952.1:p.Gly21Arg
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365372
  ensembl transcript: ENST00000376199
  gene symbol: FOXP3
  hgvsc: ENST00000376199.2:c.61G>C
  hgvsp: ENSP00000365372.2:p.Gly21Arg
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365369
  ensembl transcript: ENST00000376197
  gene symbol: FOXP3
  hgvsc: ENST00000376197.1:c.17-1G>C
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000396415
  ensembl transcript: ENST00000455775
  gene symbol: FOXP3
  hgvsc: ENST00000455775.2:c.61G>C
  hgvsp: ENSP00000396415.2:p.Gly21Arg
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365380
  ensembl transcript: ENST00000376207
  gene symbol: FOXP3
  hgvsc: ENST00000376207.4:c.61G>C
  hgvsp: ENSP00000365380.4:p.Gly21Arg
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000451208
  ensembl transcript: ENST00000557224
  gene symbol: FOXP3
  hgvsc: ENST00000557224.1:c.61G>C
  hgvsp: ENSP00000451208.1:p.Gly21Arg
  variant of: http://identifiers.org/hgnc/6106
canonical: false
consequence: splice acceptor
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 19990
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26896
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4373
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 812
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19333
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 1844
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 908
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
hgvs: c.17-1G>C
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

X-49114905-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049114905
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049114905
    reference: chr 0
allele count: 1
allele frequency: 5.252652589557727e-5
allele num: 19038
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000428952
  ensembl transcript: ENST00000518685
  gene symbol: FOXP3
  hgvsc: ENST00000518685.1:c.58C>T
  hgvsp: ENSP00000428952.1:p.Pro20Ser
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365369
  ensembl transcript: ENST00000376197
  gene symbol: FOXP3
  hgvsc: ENST00000376197.1:c.17-4C>T
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365372
  ensembl transcript: ENST00000376199
  gene symbol: FOXP3
  hgvsc: ENST00000376199.2:c.58C>T
  hgvsp: ENSP00000365372.2:p.Pro20Ser
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000396415
  ensembl transcript: ENST00000455775
  gene symbol: FOXP3
  hgvsc: ENST00000455775.2:c.58C>T
  hgvsp: ENSP00000396415.2:p.Pro20Ser
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365380
  ensembl transcript: ENST00000376207
  gene symbol: FOXP3
  hgvsc: ENST00000376207.4:c.58C>T
  hgvsp: ENSP00000365380.4:p.Pro20Ser
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000451208
  ensembl transcript: ENST00000557224
  gene symbol: FOXP3
  hgvsc: ENST00000557224.1:c.58C>T
  hgvsp: ENSP00000451208.1:p.Pro20Ser
  variant of: http://identifiers.org/hgnc/6106
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1869
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3878
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27411
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19456
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4379
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5285
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1851
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26633
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18822
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 828
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 912
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 933
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Pro20Ser
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum

X-49114933-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049114933
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049114933
    reference: chr 0
allele count: 5
allele frequency: 2.605523710265763e-4
allele num: 19190
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000428952
  ensembl transcript: ENST00000518685
  gene symbol: FOXP3
  hgvsc: ENST00000518685.1:c.30G>A
  hgvsp: ENST00000518685.1:c.30G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000451208
  ensembl transcript: ENST00000557224
  gene symbol: FOXP3
  hgvsc: ENST00000557224.1:c.30G>A
  hgvsp: ENST00000557224.1:c.30G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365380
  ensembl transcript: ENST00000376207
  gene symbol: FOXP3
  hgvsc: ENST00000376207.4:c.30G>A
  hgvsp: ENST00000376207.4:c.30G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365372
  ensembl transcript: ENST00000376199
  gene symbol: FOXP3
  hgvsc: ENST00000376199.2:c.30G>A
  hgvsp: ENST00000376199.2:c.30G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365369
  ensembl transcript: ENST00000376197
  gene symbol: FOXP3
  hgvsc: ENST00000376197.1:c.17-32G>A
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000396415
  ensembl transcript: ENST00000455775
  gene symbol: FOXP3
  hgvsc: ENST00000455775.2:c.30G>A
  hgvsp: ENST00000455775.2:c.30G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5150
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18712
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28455
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1173
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1041
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1060
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 163
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ser10Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

X-49114934-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049114934
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049114934
    reference: chr 0
allele count: 1
allele frequency: 5.179468586523023e-5
allele num: 19307
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365380
  ensembl transcript: ENST00000376207
  gene symbol: FOXP3
  hgvsc: ENST00000376207.4:c.29C>T
  hgvsp: ENSP00000365380.4:p.Ser10Leu
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365372
  ensembl transcript: ENST00000376199
  gene symbol: FOXP3
  hgvsc: ENST00000376199.2:c.29C>T
  hgvsp: ENSP00000365372.2:p.Ser10Leu
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365369
  ensembl transcript: ENST00000376197
  gene symbol: FOXP3
  hgvsc: ENST00000376197.1:c.17-33C>T
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000396415
  ensembl transcript: ENST00000455775
  gene symbol: FOXP3
  hgvsc: ENST00000455775.2:c.29C>T
  hgvsp: ENSP00000396415.2:p.Ser10Leu
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000428952
  ensembl transcript: ENST00000518685
  gene symbol: FOXP3
  hgvsc: ENST00000518685.1:c.29C>T
  hgvsp: ENSP00000428952.1:p.Ser10Leu
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000451208
  ensembl transcript: ENST00000557224
  gene symbol: FOXP3
  hgvsc: ENST00000557224.1:c.29C>T
  hgvsp: ENSP00000451208.1:p.Ser10Leu
  variant of: http://identifiers.org/hgnc/6106
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5162
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 56
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28043
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 432
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1027
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 958
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser10Leu
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: VQSLOD

X-49114954-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049114954
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049114954
    reference: chr 0
allele count: 1
allele frequency: 5.609468783306221e-5
allele num: 17827
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365372
  ensembl transcript: ENST00000376199
  gene symbol: FOXP3
  hgvsc: ENST00000376199.2:c.9C>A
  hgvsp: ENSP00000365372.2:p.Asn3Lys
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000451208
  ensembl transcript: ENST00000557224
  gene symbol: FOXP3
  hgvsc: ENST00000557224.1:c.9C>A
  hgvsp: ENSP00000451208.1:p.Asn3Lys
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365380
  ensembl transcript: ENST00000376207
  gene symbol: FOXP3
  hgvsc: ENST00000376207.4:c.9C>A
  hgvsp: ENSP00000365380.4:p.Asn3Lys
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365369
  ensembl transcript: ENST00000376197
  gene symbol: FOXP3
  hgvsc: ENST00000376197.1:c.17-53C>A
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000428952
  ensembl transcript: ENST00000518685
  gene symbol: FOXP3
  hgvsc: ENST00000518685.1:c.9C>A
  hgvsp: ENSP00000428952.1:p.Asn3Lys
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000396415
  ensembl transcript: ENST00000455775
  gene symbol: FOXP3
  hgvsc: ENST00000455775.2:c.9C>A
  hgvsp: ENSP00000396415.2:p.Asn3Lys
  variant of: http://identifiers.org/hgnc/6106
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5536
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21343
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
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genotype depth: GenotypeDepth
  all individuals: 56
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26442
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2204
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 736
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Asn3Lys
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP
site quality: QD

X-49114964-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049114964
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049114964
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 16603
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365372
  ensembl transcript: ENST00000376199
  gene symbol: FOXP3
  hgvsc: ENST00000376199.2:c.-2C>T
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000428952
  ensembl transcript: ENST00000518685
  gene symbol: FOXP3
  hgvsc: ENST00000518685.1:c.-2C>T
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365369
  ensembl transcript: ENST00000376197
  gene symbol: FOXP3
  hgvsc: ENST00000376197.1:c.17-63C>T
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365380
  ensembl transcript: ENST00000376207
  gene symbol: FOXP3
  hgvsc: ENST00000376207.4:c.-2C>T
  variant of: http://identifiers.org/hgnc/6106
canonical: true
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
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genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 108
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1219
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 299
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 1318
  bin: 1.25e1
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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  bin: 5.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 82
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 9.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum

X-49114968-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049114968
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049114968
    reference: chr 0
allele count: 1
allele frequency: 6.148548942449582e-5
allele num: 16264
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365380
  ensembl transcript: ENST00000376207
  gene symbol: FOXP3
  hgvsc: ENST00000376207.4:c.-6G>A
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365372
  ensembl transcript: ENST00000376199
  gene symbol: FOXP3
  hgvsc: ENST00000376199.2:c.-6G>A
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000428952
  ensembl transcript: ENST00000518685
  gene symbol: FOXP3
  hgvsc: ENST00000518685.1:c.-6G>A
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365369
  ensembl transcript: ENST00000376197
  gene symbol: FOXP3
  hgvsc: ENST00000376197.1:c.17-67G>A
  variant of: http://identifiers.org/hgnc/6106
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 279
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1382
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

X-49114973-TC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049114973
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049114972
    reference: chr 0
allele count: 1
allele frequency: 6.454527851287678e-5
allele num: 15493
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365369
  ensembl transcript: ENST00000376197
  gene symbol: FOXP3
  hgvsc: ENST00000376197.1:c.17-73delG
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000428952
  ensembl transcript: ENST00000518685
  gene symbol: FOXP3
  hgvsc: ENST00000518685.1:c.-12delG
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365380
  ensembl transcript: ENST00000376207
  gene symbol: FOXP3
  hgvsc: ENST00000376207.4:c.-12delG
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365372
  ensembl transcript: ENST00000376199
  gene symbol: FOXP3
  hgvsc: ENST00000376199.2:c.-12delG
  variant of: http://identifiers.org/hgnc/6106
canonical: true
consequence: 5' UTR
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: TC
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

X-49114988-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049114988
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049114988
    reference: chr 0
allele count: 1
allele frequency: 8.443093549476529e-5
allele num: 11844
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365369
  ensembl transcript: ENST00000376197
  gene symbol: FOXP3
  hgvsc: ENST00000376197.1:c.17-87G>A
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365380
  ensembl transcript: ENST00000376207
  gene symbol: FOXP3
  hgvsc: ENST00000376207.4:c.-22-4G>A
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365372
  ensembl transcript: ENST00000376199
  gene symbol: FOXP3
  hgvsc: ENST00000376199.2:c.-22-4G>A
  variant of: http://identifiers.org/hgnc/6106
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 91
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 9.75e1
  variant carriers: 1
hgvs: c.-22-4G>A
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum

X-49115633-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049115633
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049115633
    reference: chr 0
allele count: 1
allele frequency: 8.655011251514626e-5
allele num: 11554
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365380
  ensembl transcript: ENST00000376207
  gene symbol: FOXP3
  hgvsc: ENST00000376207.4:c.-22-649C>G
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365369
  ensembl transcript: ENST00000376197
  gene symbol: FOXP3
  hgvsc: ENST00000376197.1:c.16+49C>G
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365372
  ensembl transcript: ENST00000376199
  gene symbol: FOXP3
  hgvsc: ENST00000376199.2:c.-22-649C>G
  variant of: http://identifiers.org/hgnc/6106
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1611
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2131
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2758
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1398
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 653
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: DP

X-49115718-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049115718
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049115718
    reference: chr 0
allele count: 1
allele frequency: 8.694896095991653e-5
allele num: 11501
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365372
  ensembl transcript: ENST00000376199
  gene symbol: FOXP3
  hgvsc: ENST00000376199.2:c.-22-734C>T
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365380
  ensembl transcript: ENST00000376207
  gene symbol: FOXP3
  hgvsc: ENST00000376207.4:c.-22-734C>T
  variant of: http://identifiers.org/hgnc/6106
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1449
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2752
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2160
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 1249
  num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: DP

X-49126539-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049126539
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049126539
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 38
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000417535
  ensembl transcript: ENST00000495799
  gene symbol: PPP1R3F
  hgvsc: ENST00000495799.1:c.-32+143C>T
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000055335
  ensembl transcript: ENST00000055335
  gene symbol: PPP1R3F
  hgvsc: ENST00000055335.6:c.207C>T
  hgvsp: ENST00000055335.6:c.207C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000420687
  ensembl transcript: ENST00000466508
  gene symbol: PPP1R3F
  hgvsc: ENST00000466508.1:c.-298+143C>T
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000415548
  ensembl transcript: ENST00000438316
  gene symbol: PPP1R3F
  hgvsc: ENST00000438316.1:c.-247+143C>T
  variant of: http://identifiers.org/hgnc/14944
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala69Ala
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

X-49126548-T-TGGC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049126548
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049126551
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 58
alternate allele: TGGC
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000055335
  ensembl transcript: ENST00000055335
  gene symbol: PPP1R3F
  hgvsc: ENST00000055335.6:c.231_233dupCGG
  hgvsp: ENSP00000055335.6:p.Gly78dup
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000415548
  ensembl transcript: ENST00000438316
  gene symbol: PPP1R3F
  hgvsc: ENST00000438316.1:c.-247+167_-247+169dupCGG
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000417535
  ensembl transcript: ENST00000495799
  gene symbol: PPP1R3F
  hgvsc: ENST00000495799.1:c.-32+167_-32+169dupCGG
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000420687
  ensembl transcript: ENST00000466508
  gene symbol: PPP1R3F
  hgvsc: ENST00000466508.1:c.-298+167_-298+169dupCGG
  variant of: http://identifiers.org/hgnc/14944
canonical: true
consequence: inframe insertion
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26222
  bin: 2.5e0
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 4
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gly78dup
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: T
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum

X-49126548-TGGC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049126548
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049126545
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 58
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000055335
  ensembl transcript: ENST00000055335
  gene symbol: PPP1R3F
  hgvsc: ENST00000055335.6:c.231_233delCGG
  hgvsp: ENSP00000055335.6:p.Gly78del
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000415548
  ensembl transcript: ENST00000438316
  gene symbol: PPP1R3F
  hgvsc: ENST00000438316.1:c.-247+167_-247+169delCGG
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000417535
  ensembl transcript: ENST00000495799
  gene symbol: PPP1R3F
  hgvsc: ENST00000495799.1:c.-32+167_-32+169delCGG
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000420687
  ensembl transcript: ENST00000466508
  gene symbol: PPP1R3F
  hgvsc: ENST00000466508.1:c.-298+167_-298+169delCGG
  variant of: http://identifiers.org/hgnc/14944
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2013
  bin: 7.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26222
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2845
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23913
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1057
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 8.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Gly78del
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: TGGC
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

X-49126548-TGGCGGC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049126548
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049126542
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 58
alternate allele: T
canonical: false
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2013
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26222
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2845
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23913
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1057
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 2
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 20
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 32
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: NaN
  allele num: 0
  num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
reference allele: TGGCGGC
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: QD

X-49126556-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049126556
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049126556
    reference: chr 0
allele count: 1
allele frequency: 4.0e-3
allele num: 250
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000417535
  ensembl transcript: ENST00000495799
  gene symbol: PPP1R3F
  hgvsc: ENST00000495799.1:c.-32+160G>A
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000055335
  ensembl transcript: ENST00000055335
  gene symbol: PPP1R3F
  hgvsc: ENST00000055335.6:c.224G>A
  hgvsp: ENSP00000055335.6:p.Gly75Asp
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000415548
  ensembl transcript: ENST00000438316
  gene symbol: PPP1R3F
  hgvsc: ENST00000438316.1:c.-247+160G>A
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000420687
  ensembl transcript: ENST00000466508
  gene symbol: PPP1R3F
  hgvsc: ENST00000466508.1:c.-298+160G>A
  variant of: http://identifiers.org/hgnc/14944
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3009
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29428
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27542
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 567
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2223
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1685
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Gly75Asp
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum

X-49126560-C-CGGCGGGGCCGACGAGGACGACGAT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049126560
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049126584
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 252
alternate allele: CGGCGGGGCCGACGAGGACGACGAT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000417535
  ensembl transcript: ENST00000495799
  gene symbol: PPP1R3F
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000420687
  ensembl transcript: ENST00000466508
  gene symbol: PPP1R3F
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000415548
  ensembl transcript: ENST00000438316
  gene symbol: PPP1R3F
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000055335
  ensembl transcript: ENST00000055335
  gene symbol: PPP1R3F
  hgvsp: ENSP00000055335.6:p.Gly78_Gly85dup
  variant of: http://identifiers.org/hgnc/14944
canonical: true
consequence: inframe insertion
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3639
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30719
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3493
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27163
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 864
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 638
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2256
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 0
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
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genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gly78_Gly85dup
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: C
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum

X-49126567-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049126567
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049126567
    reference: chr 0
allele count: 1
allele frequency: 2.127659574468085e-3
allele num: 470
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000417535
  ensembl transcript: ENST00000495799
  gene symbol: PPP1R3F
  hgvsc: ENST00000495799.1:c.-32+171G>C
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000055335
  ensembl transcript: ENST00000055335
  gene symbol: PPP1R3F
  hgvsc: ENST00000055335.6:c.235G>C
  hgvsp: ENSP00000055335.6:p.Ala79Pro
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000415548
  ensembl transcript: ENST00000438316
  gene symbol: PPP1R3F
  hgvsc: ENST00000438316.1:c.-247+171G>C
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000420687
  ensembl transcript: ENST00000466508
  gene symbol: PPP1R3F
  hgvsc: ENST00000466508.1:c.-298+171G>C
  variant of: http://identifiers.org/hgnc/14944
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33321
  bin: 2.5e0
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 815
  bin: 1.75e1
  variant carriers: 1
hgvs: p.Ala79Pro
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP

X-49126568-C-CCGACGAGGA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049126568
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049126577
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 449
alternate allele: CCGACGAGGA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000417535
  ensembl transcript: ENST00000495799
  gene symbol: PPP1R3F
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000415548
  ensembl transcript: ENST00000438316
  gene symbol: PPP1R3F
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000055335
  ensembl transcript: ENST00000055335
  gene symbol: PPP1R3F
  hgvsc: ENST00000055335.6:c.243_251dupGGACGACGA
  hgvsp: ENSP00000055335.6:p.Glu81_Asp83dup
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000420687
  ensembl transcript: ENST00000466508
  gene symbol: PPP1R3F
  variant of: http://identifiers.org/hgnc/14944
canonical: true
consequence: inframe insertion
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Glu81_Asp83dup
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

X-49126569-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049126569
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049126569
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 489
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000055335
  ensembl transcript: ENST00000055335
  gene symbol: PPP1R3F
  hgvsc: ENST00000055335.6:c.237C>T
  hgvsp: ENST00000055335.6:c.237C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000417535
  ensembl transcript: ENST00000495799
  gene symbol: PPP1R3F
  hgvsc: ENST00000495799.1:c.-32+173C>T
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000415548
  ensembl transcript: ENST00000438316
  gene symbol: PPP1R3F
  hgvsc: ENST00000438316.1:c.-247+173C>T
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000420687
  ensembl transcript: ENST00000466508
  gene symbol: PPP1R3F
  hgvsc: ENST00000466508.1:c.-298+173C>T
  variant of: http://identifiers.org/hgnc/14944
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 5845
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1
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  variant carriers: 0
hgvs: p.Ala79Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum

X-49126576-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049126576
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049126576
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 718
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000417535
  ensembl transcript: ENST00000495799
  gene symbol: PPP1R3F
  hgvsc: ENST00000495799.1:c.-32+180G>T
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000055335
  ensembl transcript: ENST00000055335
  gene symbol: PPP1R3F
  hgvsc: ENST00000055335.6:c.244G>T
  hgvsp: ENSP00000055335.6:p.Asp82Tyr
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000420687
  ensembl transcript: ENST00000466508
  gene symbol: PPP1R3F
  hgvsc: ENST00000466508.1:c.-298+180G>T
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000415548
  ensembl transcript: ENST00000438316
  gene symbol: PPP1R3F
  hgvsc: ENST00000438316.1:c.-247+180G>T
  variant of: http://identifiers.org/hgnc/14944
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35150
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 0
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  variant carriers: 0
hgvs: p.Asp82Tyr
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: VQSLOD

X-49126579-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049126579
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049126579
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 834
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000415548
  ensembl transcript: ENST00000438316
  gene symbol: PPP1R3F
  hgvsc: ENST00000438316.1:c.-247+183G>A
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000420687
  ensembl transcript: ENST00000466508
  gene symbol: PPP1R3F
  hgvsc: ENST00000466508.1:c.-298+183G>A
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000417535
  ensembl transcript: ENST00000495799
  gene symbol: PPP1R3F
  hgvsc: ENST00000495799.1:c.-32+183G>A
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000055335
  ensembl transcript: ENST00000055335
  gene symbol: PPP1R3F
  hgvsc: ENST00000055335.6:c.247G>A
  hgvsp: ENSP00000055335.6:p.Asp83Asn
  variant of: http://identifiers.org/hgnc/14944
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.25e1
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genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Asp83Asn
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

X-49126596-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049126596
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049126596
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 2188
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000415548
  ensembl transcript: ENST00000438316
  gene symbol: PPP1R3F
  hgvsc: ENST00000438316.1:c.-247+200G>A
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000417535
  ensembl transcript: ENST00000495799
  gene symbol: PPP1R3F
  hgvsc: ENST00000495799.1:c.-32+200G>A
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000055335
  ensembl transcript: ENST00000055335
  gene symbol: PPP1R3F
  hgvsc: ENST00000055335.6:c.264G>A
  hgvsp: ENST00000055335.6:c.264G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000420687
  ensembl transcript: ENST00000466508
  gene symbol: PPP1R3F
  hgvsc: ENST00000466508.1:c.-298+200G>A
  variant of: http://identifiers.org/hgnc/14944
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Gly88Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Other
population: Latino
reference allele: G
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQ

X-49126602-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049126602
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049126602
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 2724
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000417535
  ensembl transcript: ENST00000495799
  gene symbol: PPP1R3F
  hgvsc: ENST00000495799.1:c.-32+206A>G
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000055335
  ensembl transcript: ENST00000055335
  gene symbol: PPP1R3F
  hgvsc: ENST00000055335.6:c.270A>G
  hgvsp: ENST00000055335.6:c.270A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000420687
  ensembl transcript: ENST00000466508
  gene symbol: PPP1R3F
  hgvsc: ENST00000466508.1:c.-298+206A>G
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000415548
  ensembl transcript: ENST00000438316
  gene symbol: PPP1R3F
  hgvsc: ENST00000438316.1:c.-247+206A>G
  variant of: http://identifiers.org/hgnc/14944
canonical: true
consequence: synonymous
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 25
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  variant carriers: 0
hgvs: p.Glu90Glu
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

X-49126602-AGGG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049126602
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049126599
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 2724
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000415548
  ensembl transcript: ENST00000438316
  gene symbol: PPP1R3F
  hgvsc: ENST00000438316.1:c.-247+208_-247+210delGGG
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000420687
  ensembl transcript: ENST00000466508
  gene symbol: PPP1R3F
  hgvsc: ENST00000466508.1:c.-298+208_-298+210delGGG
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000055335
  ensembl transcript: ENST00000055335
  gene symbol: PPP1R3F
  hgvsc: ENST00000055335.6:c.272_274delGGG
  hgvsp: ENSP00000055335.6:p.Gly91del
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000417535
  ensembl transcript: ENST00000495799
  gene symbol: PPP1R3F
  hgvsc: ENST00000495799.1:c.-32+208_-32+210delGGG
  variant of: http://identifiers.org/hgnc/14944
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 292
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  variant carriers: 0
hgvs: p.Gly91del
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
reference allele: AGGG
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP

X-49126604-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049126604
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049126604
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 3089
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000055335
  ensembl transcript: ENST00000055335
  gene symbol: PPP1R3F
  hgvsc: ENST00000055335.6:c.272G>A
  hgvsp: ENSP00000055335.6:p.Gly91Glu
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000415548
  ensembl transcript: ENST00000438316
  gene symbol: PPP1R3F
  hgvsc: ENST00000438316.1:c.-247+208G>A
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000420687
  ensembl transcript: ENST00000466508
  gene symbol: PPP1R3F
  hgvsc: ENST00000466508.1:c.-298+208G>A
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000417535
  ensembl transcript: ENST00000495799
  gene symbol: PPP1R3F
  hgvsc: ENST00000495799.1:c.-32+208G>A
  variant of: http://identifiers.org/hgnc/14944
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Gly91Glu
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD

X-49126605-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049126605
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049126605
    reference: chr 0
allele count: 10
allele frequency: 3.108486167236556e-3
allele num: 3217
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000055335
  ensembl transcript: ENST00000055335
  gene symbol: PPP1R3F
  hgvsc: ENST00000055335.6:c.273G>A
  hgvsp: ENST00000055335.6:c.273G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000415548
  ensembl transcript: ENST00000438316
  gene symbol: PPP1R3F
  hgvsc: ENST00000438316.1:c.-247+209G>A
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000420687
  ensembl transcript: ENST00000466508
  gene symbol: PPP1R3F
  hgvsc: ENST00000466508.1:c.-298+209G>A
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000417535
  ensembl transcript: ENST00000495799
  gene symbol: PPP1R3F
  hgvsc: ENST00000495799.1:c.-32+209G>A
  variant of: http://identifiers.org/hgnc/14944
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Gly91Gly
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
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site quality: MQ

X-49126609-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049126609
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049126609
    reference: chr 0
allele count: 1
allele frequency: 2.744990392533626e-4
allele num: 3643
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000415548
  ensembl transcript: ENST00000438316
  gene symbol: PPP1R3F
  hgvsc: ENST00000438316.1:c.-247+213G>A
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000417535
  ensembl transcript: ENST00000495799
  gene symbol: PPP1R3F
  hgvsc: ENST00000495799.1:c.-32+213G>A
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000055335
  ensembl transcript: ENST00000055335
  gene symbol: PPP1R3F
  hgvsc: ENST00000055335.6:c.277G>A
  hgvsp: ENSP00000055335.6:p.Glu93Lys
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000420687
  ensembl transcript: ENST00000466508
  gene symbol: PPP1R3F
  hgvsc: ENST00000466508.1:c.-298+213G>A
  variant of: http://identifiers.org/hgnc/14944
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Glu93Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: East Asian
reference allele: G
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

X-49126615-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049126615
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049126615
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 4452
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000417535
  ensembl transcript: ENST00000495799
  gene symbol: PPP1R3F
  hgvsc: ENST00000495799.1:c.-32+219G>A
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000415548
  ensembl transcript: ENST00000438316
  gene symbol: PPP1R3F
  hgvsc: ENST00000438316.1:c.-247+219G>A
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000420687
  ensembl transcript: ENST00000466508
  gene symbol: PPP1R3F
  hgvsc: ENST00000466508.1:c.-298+219G>A
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000055335
  ensembl transcript: ENST00000055335
  gene symbol: PPP1R3F
  hgvsc: ENST00000055335.6:c.283G>A
  hgvsp: ENSP00000055335.6:p.Glu95Lys
  variant of: http://identifiers.org/hgnc/14944
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Glu95Lys
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
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site quality: DP
site quality: VQSLOD

X-49126632-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049126632
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049126632
    reference: chr 0
allele count: 1
allele frequency: 1.374759417102007e-4
allele num: 7274
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000055335
  ensembl transcript: ENST00000055335
  gene symbol: PPP1R3F
  hgvsc: ENST00000055335.6:c.300G>A
  hgvsp: ENST00000055335.6:c.300G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000417535
  ensembl transcript: ENST00000495799
  gene symbol: PPP1R3F
  hgvsc: ENST00000495799.1:c.-32+236G>A
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000415548
  ensembl transcript: ENST00000438316
  gene symbol: PPP1R3F
  hgvsc: ENST00000438316.1:c.-247+236G>A
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000420687
  ensembl transcript: ENST00000466508
  gene symbol: PPP1R3F
  hgvsc: ENST00000466508.1:c.-298+236G>A
  variant of: http://identifiers.org/hgnc/14944
canonical: true
consequence: synonymous
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 101
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  variant carriers: 0
hgvs: p.Glu100Glu
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: QD

X-49126635-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049126635
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049126635
    reference: chr 0
allele count: 2
allele frequency: 2.53613999492772e-4
allele num: 7886
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000055335
  ensembl transcript: ENST00000055335
  gene symbol: PPP1R3F
  hgvsc: ENST00000055335.6:c.303C>T
  hgvsp: ENST00000055335.6:c.303C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000420687
  ensembl transcript: ENST00000466508
  gene symbol: PPP1R3F
  hgvsc: ENST00000466508.1:c.-298+239C>T
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000415548
  ensembl transcript: ENST00000438316
  gene symbol: PPP1R3F
  hgvsc: ENST00000438316.1:c.-247+239C>T
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000417535
  ensembl transcript: ENST00000495799
  gene symbol: PPP1R3F
  hgvsc: ENST00000495799.1:c.-32+239C>T
  variant of: http://identifiers.org/hgnc/14944
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Pro101Pro
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

X-49126636-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049126636
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049126636
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 8036
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000417535
  ensembl transcript: ENST00000495799
  gene symbol: PPP1R3F
  hgvsc: ENST00000495799.1:c.-32+240T>C
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000420687
  ensembl transcript: ENST00000466508
  gene symbol: PPP1R3F
  hgvsc: ENST00000466508.1:c.-298+240T>C
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000055335
  ensembl transcript: ENST00000055335
  gene symbol: PPP1R3F
  hgvsc: ENST00000055335.6:c.304T>C
  hgvsp: ENSP00000055335.6:p.Ser102Pro
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000415548
  ensembl transcript: ENST00000438316
  gene symbol: PPP1R3F
  hgvsc: ENST00000438316.1:c.-247+240T>C
  variant of: http://identifiers.org/hgnc/14944
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Ser102Pro
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: T
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: InbreedingCoeff

X-49126647-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049126647
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049126647
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 9181
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000415548
  ensembl transcript: ENST00000438316
  gene symbol: PPP1R3F
  hgvsc: ENST00000438316.1:c.-247+251C>T
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000055335
  ensembl transcript: ENST00000055335
  gene symbol: PPP1R3F
  hgvsc: ENST00000055335.6:c.315C>T
  hgvsp: ENST00000055335.6:c.315C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000417535
  ensembl transcript: ENST00000495799
  gene symbol: PPP1R3F
  hgvsc: ENST00000495799.1:c.-32+251C>T
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000420687
  ensembl transcript: ENST00000466508
  gene symbol: PPP1R3F
  hgvsc: ENST00000466508.1:c.-298+251C>T
  variant of: http://identifiers.org/hgnc/14944
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Cys105Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
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site quality: DP
site quality: ReadPosRankSum

X-49126650-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049126650
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049126650
    reference: chr 0
allele count: 1
allele frequency: 1.046682018002931e-4
allele num: 9554
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000420687
  ensembl transcript: ENST00000466508
  gene symbol: PPP1R3F
  hgvsc: ENST00000466508.1:c.-298+254C>G
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000415548
  ensembl transcript: ENST00000438316
  gene symbol: PPP1R3F
  hgvsc: ENST00000438316.1:c.-247+254C>G
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000055335
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  hgvsc: ENST00000055335.6:c.318C>G
  hgvsp: ENST00000055335.6:c.318C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
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  ensembl protein: ENSP00000417535
  ensembl transcript: ENST00000495799
  gene symbol: PPP1R3F
  hgvsc: ENST00000495799.1:c.-32+254C>G
  variant of: http://identifiers.org/hgnc/14944
canonical: true
consequence: synonymous
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 190
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 79
  bin: 5.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1384
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Pro106Pro
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

X-49126653-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049126653
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049126653
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 9984
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000420687
  ensembl transcript: ENST00000466508
  gene symbol: PPP1R3F
  hgvsc: ENST00000466508.1:c.-298+257C>G
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000055335
  ensembl transcript: ENST00000055335
  gene symbol: PPP1R3F
  hgvsc: ENST00000055335.6:c.321C>G
  hgvsp: ENST00000055335.6:c.321C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000417535
  ensembl transcript: ENST00000495799
  gene symbol: PPP1R3F
  hgvsc: ENST00000495799.1:c.-32+257C>G
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000415548
  ensembl transcript: ENST00000438316
  gene symbol: PPP1R3F
  hgvsc: ENST00000438316.1:c.-247+257C>G
  variant of: http://identifiers.org/hgnc/14944
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.75e1
  variant carriers: 0
hgvs: p.Val107Val
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP

X-49126656-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049126656
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049126656
    reference: chr 0
allele count: 1854
allele frequency: 1.529450585711929e-1
allele num: 12122
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000415548
  ensembl transcript: ENST00000438316
  gene symbol: PPP1R3F
  hgvsc: ENST00000438316.1:c.-247+260C>T
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000417535
  ensembl transcript: ENST00000495799
  gene symbol: PPP1R3F
  hgvsc: ENST00000495799.1:c.-32+260C>T
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000055335
  ensembl transcript: ENST00000055335
  gene symbol: PPP1R3F
  hgvsc: ENST00000055335.6:c.324C>T
  hgvsp: ENST00000055335.6:c.324C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000420687
  ensembl transcript: ENST00000466508
  gene symbol: PPP1R3F
  hgvsc: ENST00000466508.1:c.-298+260C>T
  variant of: http://identifiers.org/hgnc/14944
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 3.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
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  variant carriers: 196
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 6.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Pro108Pro
num of homozygotes: 74
population: African
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ

X-49126662-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049126662
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049126662
    reference: chr 0
allele count: 1
allele frequency: 9.075233687267448e-5
allele num: 11019
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000420687
  ensembl transcript: ENST00000466508
  gene symbol: PPP1R3F
  hgvsc: ENST00000466508.1:c.-298+266C>T
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000415548
  ensembl transcript: ENST00000438316
  gene symbol: PPP1R3F
  hgvsc: ENST00000438316.1:c.-247+266C>T
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000055335
  ensembl transcript: ENST00000055335
  gene symbol: PPP1R3F
  hgvsc: ENST00000055335.6:c.330C>T
  hgvsp: ENST00000055335.6:c.330C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000417535
  ensembl transcript: ENST00000495799
  gene symbol: PPP1R3F
  hgvsc: ENST00000495799.1:c.-32+266C>T
  variant of: http://identifiers.org/hgnc/14944
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Gly110Gly
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

X-49126669-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049126669
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049126669
    reference: chr 0
allele count: 7
allele frequency: 7.037297677691766e-4
allele num: 9947
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000055335
  ensembl transcript: ENST00000055335
  gene symbol: PPP1R3F
  hgvsc: ENST00000055335.6:c.337T>G
  hgvsp: ENSP00000055335.6:p.Phe113Val
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000415548
  ensembl transcript: ENST00000438316
  gene symbol: PPP1R3F
  hgvsc: ENST00000438316.1:c.-247+273T>G
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000420687
  ensembl transcript: ENST00000466508
  gene symbol: PPP1R3F
  hgvsc: ENST00000466508.1:c.-298+273T>G
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000417535
  ensembl transcript: ENST00000495799
  gene symbol: PPP1R3F
  hgvsc: ENST00000495799.1:c.-32+273T>G
  variant of: http://identifiers.org/hgnc/14944
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Phe113Val
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: DP

X-49126679-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049126679
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049126679
    reference: chr 0
allele count: 1
allele frequency: 7.940289026520565e-5
allele num: 12594
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000415548
  ensembl transcript: ENST00000438316
  gene symbol: PPP1R3F
  hgvsc: ENST00000438316.1:c.-247+283T>C
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000055335
  ensembl transcript: ENST00000055335
  gene symbol: PPP1R3F
  hgvsc: ENST00000055335.6:c.347T>C
  hgvsp: ENSP00000055335.6:p.Val116Ala
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000417535
  ensembl transcript: ENST00000495799
  gene symbol: PPP1R3F
  hgvsc: ENST00000495799.1:c.-32+283T>C
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000420687
  ensembl transcript: ENST00000466508
  gene symbol: PPP1R3F
  hgvsc: ENST00000466508.1:c.-298+283T>C
  variant of: http://identifiers.org/hgnc/14944
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Val116Ala
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
reference allele: T
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
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X-49126692-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049126692
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049126692
    reference: chr 0
allele count: 1
allele frequency: 8.452370890034655e-5
allele num: 11831
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000415548
  ensembl transcript: ENST00000438316
  gene symbol: PPP1R3F
  hgvsc: ENST00000438316.1:c.-247+296G>A
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000420687
  ensembl transcript: ENST00000466508
  gene symbol: PPP1R3F
  hgvsc: ENST00000466508.1:c.-298+296G>A
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000055335
  ensembl transcript: ENST00000055335
  gene symbol: PPP1R3F
  hgvsc: ENST00000055335.6:c.360G>A
  hgvsp: ENST00000055335.6:c.360G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000417535
  ensembl transcript: ENST00000495799
  gene symbol: PPP1R3F
  hgvsc: ENST00000495799.1:c.-32+296G>A
  variant of: http://identifiers.org/hgnc/14944
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Ser120Ser
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: VQSLOD

X-49126693-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049126693
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049126693
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 11937
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000417535
  ensembl transcript: ENST00000495799
  gene symbol: PPP1R3F
  hgvsc: ENST00000495799.1:c.-32+297C>T
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000415548
  ensembl transcript: ENST00000438316
  gene symbol: PPP1R3F
  hgvsc: ENST00000438316.1:c.-247+297C>T
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000420687
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  gene symbol: PPP1R3F
  hgvsc: ENST00000466508.1:c.-298+297C>T
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
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  consequence: synonymous_variant
  ensembl gene: ENSG00000049769
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  hgvsp: ENST00000055335.6:c.361C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14944
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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hgvs: p.Leu121Leu
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
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site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
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X-49126695-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049126695
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049126695
    reference: chr 0
allele count: 1
allele frequency: 8.697164724299878e-5
allele num: 11498
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000420687
  ensembl transcript: ENST00000466508
  gene symbol: PPP1R3F
  hgvsc: ENST00000466508.1:c.-298+299G>T
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000055335
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  gene symbol: PPP1R3F
  hgvsc: ENST00000055335.6:c.363G>T
  hgvsp: ENST00000055335.6:c.363G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
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  gene symbol: PPP1R3F
  hgvsc: ENST00000495799.1:c.-32+299G>T
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
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  gene symbol: PPP1R3F
  hgvsc: ENST00000438316.1:c.-247+299G>T
  variant of: http://identifiers.org/hgnc/14944
canonical: true
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genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 978
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Leu121Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: East Asian
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: BaseQRankSum

X-49126714-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049126714
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049126714
    reference: chr 0
allele count: 688
allele frequency: 6.11936315929912e-2
allele num: 11243
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000055335
  ensembl transcript: ENST00000055335
  gene symbol: PPP1R3F
  hgvsc: ENST00000055335.6:c.382C>T
  hgvsp: ENST00000055335.6:c.382C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000415548
  ensembl transcript: ENST00000438316
  gene symbol: PPP1R3F
  hgvsc: ENST00000438316.1:c.-247+318C>T
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000420687
  ensembl transcript: ENST00000466508
  gene symbol: PPP1R3F
  hgvsc: ENST00000466508.1:c.-298+318C>T
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000417535
  ensembl transcript: ENST00000495799
  gene symbol: PPP1R3F
  hgvsc: ENST00000495799.1:c.-32+318C>T
  variant of: http://identifiers.org/hgnc/14944
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22871
  bin: 7.5e0
  variant carriers: 543
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 40
genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 27
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 6.75e1
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 7.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.75e1
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genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 58
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 6
hgvs: p.Leu128Leu
num of homozygotes: 78
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: East Asian
population: South Asian
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

X-49126722-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049126722
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049126722
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 10069
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000415548
  ensembl transcript: ENST00000438316
  gene symbol: PPP1R3F
  hgvsc: ENST00000438316.1:c.-247+326C>G
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000417535
  ensembl transcript: ENST00000495799
  gene symbol: PPP1R3F
  hgvsc: ENST00000495799.1:c.-32+326C>G
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000420687
  ensembl transcript: ENST00000466508
  gene symbol: PPP1R3F
  hgvsc: ENST00000466508.1:c.-298+326C>G
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000055335
  ensembl transcript: ENST00000055335
  gene symbol: PPP1R3F
  hgvsc: ENST00000055335.6:c.390C>G
  hgvsp: ENST00000055335.6:c.390C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14944
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 25552
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
hgvs: p.Arg130Arg
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: DP

X-49126725-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049126725
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049126725
    reference: chr 0
allele count: 1
allele frequency: 1.022181334968823e-4
allele num: 9783
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000415548
  ensembl transcript: ENST00000438316
  gene symbol: PPP1R3F
  hgvsc: ENST00000438316.1:c.-247+329G>A
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000055335
  ensembl transcript: ENST00000055335
  gene symbol: PPP1R3F
  hgvsc: ENST00000055335.6:c.393G>A
  hgvsp: ENST00000055335.6:c.393G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000417535
  ensembl transcript: ENST00000495799
  gene symbol: PPP1R3F
  hgvsc: ENST00000495799.1:c.-32+329G>A
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000420687
  ensembl transcript: ENST00000466508
  gene symbol: PPP1R3F
  hgvsc: ENST00000466508.1:c.-298+329G>A
  variant of: http://identifiers.org/hgnc/14944
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4133
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Leu131Leu
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

X-49126729-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049126729
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049126729
    reference: chr 0
allele count: 1
allele frequency: 1.066894270777766e-4
allele num: 9373
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000415548
  ensembl transcript: ENST00000438316
  gene symbol: PPP1R3F
  hgvsc: ENST00000438316.1:c.-247+333C>T
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000055335
  ensembl transcript: ENST00000055335
  gene symbol: PPP1R3F
  hgvsc: ENST00000055335.6:c.397C>T
  hgvsp: ENSP00000055335.6:p.Arg133Cys
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000417535
  ensembl transcript: ENST00000495799
  gene symbol: PPP1R3F
  hgvsc: ENST00000495799.1:c.-32+333C>T
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000420687
  ensembl transcript: ENST00000466508
  gene symbol: PPP1R3F
  hgvsc: ENST00000466508.1:c.-298+333C>T
  variant of: http://identifiers.org/hgnc/14944
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg133Cys
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: QD

X-49126736-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049126736
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049126736
    reference: chr 0
allele count: 1
allele frequency: 1.159823706796567e-4
allele num: 8622
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000415548
  ensembl transcript: ENST00000438316
  gene symbol: PPP1R3F
  hgvsc: ENST00000438316.1:c.-246-335T>C
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000055335
  ensembl transcript: ENST00000055335
  gene symbol: PPP1R3F
  hgvsc: ENST00000055335.6:c.404T>C
  hgvsp: ENSP00000055335.6:p.Met135Thr
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000417535
  ensembl transcript: ENST00000495799
  gene symbol: PPP1R3F
  hgvsc: ENST00000495799.1:c.-32+340T>C
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000420687
  ensembl transcript: ENST00000466508
  gene symbol: PPP1R3F
  hgvsc: ENST00000466508.1:c.-297-335T>C
  variant of: http://identifiers.org/hgnc/14944
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
hgvs: p.Met135Thr
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum

X-49126762-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049126762
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049126762
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 5074
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000055335
  ensembl transcript: ENST00000055335
  gene symbol: PPP1R3F
  hgvsc: ENST00000055335.6:c.430C>T
  hgvsp: ENSP00000055335.6:p.Pro144Ser
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000420687
  ensembl transcript: ENST00000466508
  gene symbol: PPP1R3F
  hgvsc: ENST00000466508.1:c.-297-309C>T
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000415548
  ensembl transcript: ENST00000438316
  gene symbol: PPP1R3F
  hgvsc: ENST00000438316.1:c.-246-309C>T
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000417535
  ensembl transcript: ENST00000495799
  gene symbol: PPP1R3F
  hgvsc: ENST00000495799.1:c.-32+366C>T
  variant of: http://identifiers.org/hgnc/14944
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Pro144Ser
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD

X-49126766-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049126766
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049126766
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 4415
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000417535
  ensembl transcript: ENST00000495799
  gene symbol: PPP1R3F
  hgvsc: ENST00000495799.1:c.-32+370C>T
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000420687
  ensembl transcript: ENST00000466508
  gene symbol: PPP1R3F
  hgvsc: ENST00000466508.1:c.-297-305C>T
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000055335
  ensembl transcript: ENST00000055335
  gene symbol: PPP1R3F
  hgvsc: ENST00000055335.6:c.434C>T
  hgvsp: ENSP00000055335.6:p.Pro145Leu
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000415548
  ensembl transcript: ENST00000438316
  gene symbol: PPP1R3F
  hgvsc: ENST00000438316.1:c.-246-305C>T
  variant of: http://identifiers.org/hgnc/14944
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Pro145Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: African
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: DP

X-49126791-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049126791
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049126791
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 2303
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000055335
  ensembl transcript: ENST00000055335
  gene symbol: PPP1R3F
  hgvsc: ENST00000055335.6:c.459G>A
  hgvsp: ENST00000055335.6:c.459G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000420687
  ensembl transcript: ENST00000466508
  gene symbol: PPP1R3F
  hgvsc: ENST00000466508.1:c.-297-280G>A
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000417535
  ensembl transcript: ENST00000495799
  gene symbol: PPP1R3F
  hgvsc: ENST00000495799.1:c.-32+395G>A
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000415548
  ensembl transcript: ENST00000438316
  gene symbol: PPP1R3F
  hgvsc: ENST00000438316.1:c.-246-280G>A
  variant of: http://identifiers.org/hgnc/14944
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Gly153Gly
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

X-49126800-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049126800
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049126800
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 2209
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000055335
  ensembl transcript: ENST00000055335
  gene symbol: PPP1R3F
  hgvsc: ENST00000055335.6:c.468G>A
  hgvsp: ENST00000055335.6:c.468G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000417535
  ensembl transcript: ENST00000495799
  gene symbol: PPP1R3F
  hgvsc: ENST00000495799.1:c.-32+404G>A
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000420687
  ensembl transcript: ENST00000466508
  gene symbol: PPP1R3F
  hgvsc: ENST00000466508.1:c.-297-271G>A
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000415548
  ensembl transcript: ENST00000438316
  gene symbol: PPP1R3F
  hgvsc: ENST00000438316.1:c.-246-271G>A
  variant of: http://identifiers.org/hgnc/14944
canonical: true
consequence: synonymous
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 1.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 24
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genotype quality: GenotypeQuality
  all individuals: 4574
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 1963
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6121
  bin: 2.5e0
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
hgvs: p.Val156Val
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQ

X-49126800-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049126800
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049126800
    reference: chr 0
allele count: 1
allele frequency: 4.526935264825713e-4
allele num: 2209
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000417535
  ensembl transcript: ENST00000495799
  gene symbol: PPP1R3F
  hgvsc: ENST00000495799.1:c.-32+404G>C
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000415548
  ensembl transcript: ENST00000438316
  gene symbol: PPP1R3F
  hgvsc: ENST00000438316.1:c.-246-271G>C
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000055335
  ensembl transcript: ENST00000055335
  gene symbol: PPP1R3F
  hgvsc: ENST00000055335.6:c.468G>C
  hgvsp: ENST00000055335.6:c.468G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000420687
  ensembl transcript: ENST00000466508
  gene symbol: PPP1R3F
  hgvsc: ENST00000466508.1:c.-297-271G>C
  variant of: http://identifiers.org/hgnc/14944
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1963
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  variant carriers: 0
hgvs: p.Val156Val
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: InbreedingCoeff

X-49126803-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049126803
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049126803
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 2141
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000420687
  ensembl transcript: ENST00000466508
  gene symbol: PPP1R3F
  hgvsc: ENST00000466508.1:c.-297-268T>C
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000415548
  ensembl transcript: ENST00000438316
  gene symbol: PPP1R3F
  hgvsc: ENST00000438316.1:c.-246-268T>C
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000417535
  ensembl transcript: ENST00000495799
  gene symbol: PPP1R3F
  hgvsc: ENST00000495799.1:c.-32+407T>C
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000055335
  ensembl transcript: ENST00000055335
  gene symbol: PPP1R3F
  hgvsc: ENST00000055335.6:c.471T>C
  hgvsp: ENST00000055335.6:c.471T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14944
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Pro157Pro
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum

X-49126817-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049126817
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049126817
    reference: chr 0
allele count: 1
allele frequency: 2.400960384153662e-4
allele num: 4165
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000420687
  ensembl transcript: ENST00000466508
  gene symbol: PPP1R3F
  hgvsc: ENST00000466508.1:c.-297-254C>T
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000417535
  ensembl transcript: ENST00000495799
  gene symbol: PPP1R3F
  hgvsc: ENST00000495799.1:c.-32+421C>T
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000055335
  ensembl transcript: ENST00000055335
  gene symbol: PPP1R3F
  hgvsc: ENST00000055335.6:c.485C>T
  hgvsp: ENSP00000055335.6:p.Pro162Leu
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000415548
  ensembl transcript: ENST00000438316
  gene symbol: PPP1R3F
  hgvsc: ENST00000438316.1:c.-246-254C>T
  variant of: http://identifiers.org/hgnc/14944
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 8132
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Pro162Leu
num of homozygotes: 0
population: Latino
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP

X-49126836-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049126836
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049126836
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 6577
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000055335
  ensembl transcript: ENST00000055335
  gene symbol: PPP1R3F
  hgvsc: ENST00000055335.6:c.504A>T
  hgvsp: ENST00000055335.6:c.504A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000417535
  ensembl transcript: ENST00000495799
  gene symbol: PPP1R3F
  hgvsc: ENST00000495799.1:c.-32+440A>T
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000415548
  ensembl transcript: ENST00000438316
  gene symbol: PPP1R3F
  hgvsc: ENST00000438316.1:c.-246-235A>T
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000420687
  ensembl transcript: ENST00000466508
  gene symbol: PPP1R3F
  hgvsc: ENST00000466508.1:c.-297-235A>T
  variant of: http://identifiers.org/hgnc/14944
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33131
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 2
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30772
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2244
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1750
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Val168Val
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

X-49126838-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049126838
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049126838
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 6821
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000420687
  ensembl transcript: ENST00000466508
  gene symbol: PPP1R3F
  hgvsc: ENST00000466508.1:c.-297-233G>C
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000415548
  ensembl transcript: ENST00000438316
  gene symbol: PPP1R3F
  hgvsc: ENST00000438316.1:c.-246-233G>C
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000417535
  ensembl transcript: ENST00000495799
  gene symbol: PPP1R3F
  hgvsc: ENST00000495799.1:c.-32+442G>C
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000055335
  ensembl transcript: ENST00000055335
  gene symbol: PPP1R3F
  hgvsc: ENST00000055335.6:c.506G>C
  hgvsp: ENSP00000055335.6:p.Arg169Pro
  variant of: http://identifiers.org/hgnc/14944
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 14009
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32995
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2735
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11355
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1431
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30805
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2890
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg169Pro
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: QD

X-49126840-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049126840
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049126840
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 7062
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000055335
  ensembl transcript: ENST00000055335
  gene symbol: PPP1R3F
  hgvsc: ENST00000055335.6:c.508G>A
  hgvsp: ENSP00000055335.6:p.Val170Met
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000420687
  ensembl transcript: ENST00000466508
  gene symbol: PPP1R3F
  hgvsc: ENST00000466508.1:c.-297-231G>A
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000417535
  ensembl transcript: ENST00000495799
  gene symbol: PPP1R3F
  hgvsc: ENST00000495799.1:c.-32+444G>A
  variant of: http://identifiers.org/hgnc/14944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049769
  ensembl protein: ENSP00000415548
  ensembl transcript: ENST00000438316
  gene symbol: PPP1R3F
  hgvsc: ENST00000438316.1:c.-246-231G>A
  variant of: http://identifiers.org/hgnc/14944
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14429
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32820
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2845
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1493
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30590
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2159
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1870
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11503
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3010
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Val170Met
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: African
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ

GenotypeQuality
all individuals: 756
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 5983
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 322
bin: 9.75e1
variant carriers: 12

GenotypeQuality
all individuals: 155
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6316
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 133
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 31
num of homozygotes: 0

African
type: Population
allele count: 12
allele frequency: 5.44464609800363e-3
allele num: 2204
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 301
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 496
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4265
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.04e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.11e0

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.7e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.462e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.35e-1

DP
type: SiteQuality
SIO_000300: 2.78978e5

QD
type: SiteQuality
SIO_000300: 1.488e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.31e-1

GenotypeQuality
all individuals: 181
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2207
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4280
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 31
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6325
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 301
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 496
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 133
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.819e0

QD
type: SiteQuality
SIO_000300: 1.902e1

MQ
type: SiteQuality
SIO_000300: 5.671e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.57e-2

MQRankSum
type: SiteQuality
SIO_000300: -5.09e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.65e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.39e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.620000000000001e-1

DP
type: SiteQuality
SIO_000300: 2.80448e5

ClippingRankSum
type: SiteQuality
SIO_000300: -7.41e-1

GenotypeQuality
all individuals: 268
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 752
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5965
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 7.25e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 31
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 301
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 496
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6325
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 133
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.336448598130841e-4
allele num: 4280
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 4.531037607612143e-4
allele num: 2207
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.620000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.09e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.39e0

DP
type: SiteQuality
SIO_000300: 2.80448e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.57e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.65e-1

FS
type: SiteQuality
SIO_000300: 2.819e0

MQ
type: SiteQuality
SIO_000300: 5.671e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.41e-1

QD
type: SiteQuality
SIO_000300: 1.902e1

GenotypeQuality
all individuals: 5598
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 311
bin: 9.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6301
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 502
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2177
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 304
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4307
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 31
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.91e1

DP
type: SiteQuality
SIO_000300: 2.86715e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.41e-2

VQSLOD
type: SiteQuality
SIO_000300: -7.76e-2

GenotypeQuality
all individuals: 735
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 2

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 107
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2494
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 86
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6305
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4353
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 29
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 301
num of homozygotes: 0

East Asian
type: Population
allele count: 20
allele frequency: 3.944773175542406e-2
allele num: 507
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 7.518796992481203e-3
allele num: 133
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2152
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.69e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.97e-2

QD
type: SiteQuality
SIO_000300: 1.514e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.05e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.12e-1

FS
type: SiteQuality
SIO_000300: 4.064e0

DP
type: SiteQuality
SIO_000300: 2.98933e5

BaseQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.44e-1

GenotypeQuality
all individuals: 27820
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
all individuals: 307
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 762
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 33
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2123
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 509
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 130
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 303
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4482
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.581527755812114e-4
allele num: 6323
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -8.625e-1

FS
type: SiteQuality
SIO_000300: 2.479e0

DP
type: SiteQuality
SIO_000300: 3.17359e5

BaseQRankSum
type: SiteQuality
SIO_000300: 9.99e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 9.24e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.489999999999999e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.8e-2

QD
type: SiteQuality
SIO_000300: 1.781e1

GenotypeQuality
all individuals: 60
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 306
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 130
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 29
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 300
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6281
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 540
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4543
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2006
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.193e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.363e1

VQSLOD
type: SiteQuality
SIO_000300: -6.525e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.03e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.37e-2

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.71e-1

DP
type: SiteQuality
SIO_000300: 3.35154e5

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6246
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 41
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 540
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4548
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 31
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2011
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6291
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 130
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 3.344481605351171e-3
allele num: 299
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.47e-1

DP
type: SiteQuality
SIO_000300: 3.36923e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.347e0

FS
type: SiteQuality
SIO_000300: 1.372e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.389999999999999e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.253e0

MQRankSum
type: SiteQuality
SIO_000300: 1.77e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.4e0

QD
type: SiteQuality
SIO_000300: 6.7e0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5795
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 799
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6271
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 35
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 308
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1961
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 565
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 131
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.190580503833516e-4
allele num: 4565
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.754e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.23e-2

FS
type: SiteQuality
SIO_000300: 3.68e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.75e0

VQSLOD
type: SiteQuality
SIO_000300: -4.59e0

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

QD
type: SiteQuality
SIO_000300: 3.0e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.370000000000001e-1

DP
type: SiteQuality
SIO_000300: 3.42777e5

GenotypeQuality
all individuals: 6391
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 821
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30142
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 762
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 41
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6182
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 312
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 4.370629370629371e-4
allele num: 4576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6290
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 35
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 131
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1956
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.12e-2

QD
type: SiteQuality
SIO_000300: 1.492e1

VQSLOD
type: SiteQuality
SIO_000300: -1.972e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.76e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.46853e5

MQRankSum
type: SiteQuality
SIO_000300: 1.21e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.935e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.61e-1

GenotypeQuality
all individuals: 85
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 745
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1367
bin: 1.75e1
variant carriers: 1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1911
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 587
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 318
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 130
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4588
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6233
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.08e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.27e-1

QD
type: SiteQuality
SIO_000300: 1.688e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.03e-2

DP
type: SiteQuality
SIO_000300: 3.55379e5

GenotypeQuality
all individuals: 88
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 740
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 90
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6309
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1916
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 318
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.176278563656148e-4
allele num: 4595
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.64224e5

QD
type: SiteQuality
SIO_000300: 2.568e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.840000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.87e-2

FS
type: SiteQuality
SIO_000300: 3.332e0

VQSLOD
type: SiteQuality
SIO_000300: -2.348e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.56e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.56e-1

GenotypeQuality
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bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 74
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1221
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
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GenotypeQuality
all individuals: 90
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1968
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 348
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4609
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 655
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 7.462686567164179e-3
allele num: 134
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.117692907248636e-4
allele num: 6415
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.874e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.69e-1

QD
type: SiteQuality
SIO_000300: 9.289999999999999e0

FS
type: SiteQuality
SIO_000300: 1.129e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.58e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.31e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 3.76907e5

MQRankSum
type: SiteQuality
SIO_000300: -5.73e-1

GenotypeQuality
all individuals: 420
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 840
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 9.75e1
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GenotypeQuality
all individuals: 24
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variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 8.75e1
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GenotypeQuality
all individuals: 732
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6391
bin: 6.25e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 765
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 103
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504438092372499e-4
allele num: 6647
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2034
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 397
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 136
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4652
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.04e-2

QD
type: SiteQuality
SIO_000300: 1.232e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.47e-1

FS
type: SiteQuality
SIO_000300: 2.801e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.2e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.47e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.394e0

MQRankSum
type: SiteQuality
SIO_000300: -7.02e-1

DP
type: SiteQuality
SIO_000300: 4.03015e5

GenotypeQuality
all individuals: 173
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6470
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 134
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 412
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4657
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.506265664160401e-3
allele num: 798
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 110
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6741
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2057
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.559e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.29e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 4.08e0

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

FS
type: SiteQuality
SIO_000300: 1.492e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

DP
type: SiteQuality
SIO_000300: 4.10425e5

GenotypeQuality
all individuals: 5559
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 377
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variant carriers: 0

GenotypeQuality
all individuals: 622
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4482
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.223540927444023e-4
allele num: 8173
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 244
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2439
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 153
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1359
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.406e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.37e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -7.11e-1

QD
type: SiteQuality
SIO_000300: 4.16e0

FS
type: SiteQuality
SIO_000300: 5.803e0

MQRankSum
type: SiteQuality
SIO_000300: 1.1e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.25e0

DP
type: SiteQuality
SIO_000300: 4.69616e5

GenotypeQuality
all individuals: 2184
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 169
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variant carriers: 1

GenotypeQuality
all individuals: 849
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 912
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 4.497413986957499e-4
allele num: 4447
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8340
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2456
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1383
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 264
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 152
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.27e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.468e1

FS
type: SiteQuality
SIO_000300: 1.432e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.7e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.23e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.62e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.81e-1

DP
type: SiteQuality
SIO_000300: 4.7096e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.2e-1

GenotypeQuality
all individuals: 1016
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20013
bin: 7.5e0
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 773
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 30
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variant carriers: 0

GenotypeQuality
all individuals: 96
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variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 278
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2521
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.247191011235955e-4
allele num: 4450
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 155
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1453
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 978
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.114e0

FS
type: SiteQuality
SIO_000300: 3.405e0

MQRankSum
type: SiteQuality
SIO_000300: 5.71e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.11e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.786e0

VQSLOD
type: SiteQuality
SIO_000300: -9.48e-2

QD
type: SiteQuality
SIO_000300: 1.041e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.77e-1

DP
type: SiteQuality
SIO_000300: 4.75963e5

GenotypeQuality
all individuals: 876
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 304
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 420
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
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variant carriers: 0

GenotypeQuality
all individuals: 26034
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1015
bin: 1.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8782
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4361
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2565
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 293
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1522
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1078
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 156
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.279e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.94e-2

QD
type: SiteQuality
SIO_000300: 8.82e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.589e0

MQRankSum
type: SiteQuality
SIO_000300: -1.067e0

DP
type: SiteQuality
SIO_000300: 4.79739e5

ClippingRankSum
type: SiteQuality
SIO_000300: -1.067e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.72e-1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1025
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variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 608
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variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 430
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GenotypeQuality
all individuals: 305
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variant carriers: 1

GenotypeQuality
all individuals: 30
bin: 9.25e1
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GenotypeQuality
all individuals: 144
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 158
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4314
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8955
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1131
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2591
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 313
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 6.345177664974619e-4
allele num: 1576
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.65e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.86e-2

DP
type: SiteQuality
SIO_000300: 4.82699e5

QD
type: SiteQuality
SIO_000300: 1.692e1

FS
type: SiteQuality
SIO_000300: 3.01e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.41e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -7.589e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.383e0

GenotypeQuality
all individuals: 167
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 896
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variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 307
bin: 9.75e1
variant carriers: 4

GenotypeQuality
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GenotypeQuality
all individuals: 3573
bin: 6.25e1
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 3.200682812333298e-4
allele num: 9373
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1452
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.985965959988056e-4
allele num: 3349
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 3.837298541826554e-4
allele num: 2606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1833
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 149
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 428
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.966e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.77e-2

DP
type: SiteQuality
SIO_000300: 4.67949e5

FS
type: SiteQuality
SIO_000300: 2.474e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.07e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.18e0

VQSLOD
type: SiteQuality
SIO_000300: 2.21e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.72e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.71e-1

QD
type: SiteQuality
SIO_000300: 1.473e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 209
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 148
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9448
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1841
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1459
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.986857825567503e-4
allele num: 3348
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2635
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 428
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.833e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.79e-2

QD
type: SiteQuality
SIO_000300: 2.457e1

DP
type: SiteQuality
SIO_000300: 4.69009e5

VQSLOD
type: SiteQuality
SIO_000300: -3.915e-1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2746
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 29
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GenotypeQuality
all individuals: 26524
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GenotypeQuality
all individuals: 124
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1792
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 427
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1364
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2706
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.124606387764283e-4
allele num: 8892
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 127
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.961e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.26e-2

MQ
type: SiteQuality
SIO_000300: 5.805e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 4.33931e5

QD
type: SiteQuality
SIO_000300: 2.498e1

GenotypeQuality
all individuals: 41
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 683
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2418
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1272
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2376
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 128
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 421
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1670
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8318
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.61e-1

DP
type: SiteQuality
SIO_000300: 4.07964e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.74e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.29e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.843e-1

FS
type: SiteQuality
SIO_000300: 2.808e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.159e0

MQ
type: SiteQuality
SIO_000300: 5.682e1

MQRankSum
type: SiteQuality
SIO_000300: -1.307e0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

East Asian
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allele frequency: 6.093845216331506e-4
allele num: 1641
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 424
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 2277
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 2380
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 1233
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 8186
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 123
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FS
type: SiteQuality
SIO_000300: 2.171e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
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MQRankSum
type: SiteQuality
SIO_000300: 5.97e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.91e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -5.97e-1

DP
type: SiteQuality
SIO_000300: 3.9584e5

VQSLOD
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.79e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 416
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 1164
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 1568
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South Asian
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allele frequency: 0.0e0
allele num: 2103
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African
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allele frequency: 4.299226139294927e-4
allele num: 2326
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Other
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allele frequency: 0.0e0
allele num: 117
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 7799
num of homozygotes: 0

VQSLOD
type: SiteQuality
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DP
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BaseQRankSum
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ClippingRankSum
type: SiteQuality
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MQRankSum
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MQ
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SIO_000300: 6.265e1

FS
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InbreedingCoeff
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QD
type: SiteQuality
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ReadPosRankSum
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 1461
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 309
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 88
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.67000668002672e-4
allele num: 5988
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 747
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African
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allele frequency: 0.0e0
allele num: 2007
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 1244
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BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.93e-1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 216
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 397
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European (Finnish)
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allele frequency: 0.0e0
allele num: 1261
num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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allele num: 4576
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Other
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allele frequency: 0.0e0
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MQ
type: SiteQuality
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FS
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InbreedingCoeff
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VQSLOD
type: SiteQuality
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QD
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DP
type: SiteQuality
SIO_000300: 3.1302e5

East Asian
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allele frequency: 0.0e0
allele num: 392
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 145
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 740
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4175
num of homozygotes: 0

South Asian
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allele frequency: 2.181500872600349e-4
allele num: 4584
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-2

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
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DP
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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East Asian
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allele num: 0
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Other
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allele frequency: NaN
allele num: 0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 16
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Latino
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 5.4142e4

ClippingRankSum
type: SiteQuality
SIO_000300: 7.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.024e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.31e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: NaN
allele num: 0
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East Asian
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allele count: 0
allele frequency: NaN
allele num: 0
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African
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
type: Population
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allele frequency: 0.0e0
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Other
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allele count: 0
allele frequency: NaN
allele num: 0
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QD
type: SiteQuality
SIO_000300: 1.964e1

DP
type: SiteQuality
SIO_000300: 7.0511e4

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.997e-1

MQ
type: SiteQuality
SIO_000300: 5.705e1

FS
type: SiteQuality
SIO_000300: 1.0022e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.05e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 3

South Asian
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allele frequency: 0.0e0
allele num: 32
num of homozygotes: 0

Other
type: Population
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allele frequency: NaN
allele num: 0
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 4
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
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East Asian
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 20
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.997e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

DP
type: SiteQuality
SIO_000300: 7.0511e4

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.964e1

FS
type: SiteQuality
SIO_000300: 1.0022e1

MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

African
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allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
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ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQRankSum
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InbreedingCoeff
type: SiteQuality
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DP
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FS
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ReadPosRankSum
type: SiteQuality
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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Other
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East Asian
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African
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.31578947368421e-2
allele num: 76
num of homozygotes: 0

DP
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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VQSLOD
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ClippingRankSum
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FS
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QD
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MQ
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BaseQRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

South Asian
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European (Finnish)
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Other
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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East Asian
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African
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QD
type: SiteQuality
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DP
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MQRankSum
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MQ
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FS
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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VQSLOD
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BaseQRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 2

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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African
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allele frequency: 2.941176470588235e-2
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 171
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Other
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num of homozygotes: 0

East Asian
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VQSLOD
type: SiteQuality
SIO_000300: -6.411e-1

MQRankSum
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MQ
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InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
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DP
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

East Asian
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European (Non-Finnish)
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Other
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African
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Latino
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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allele num: 183
num of homozygotes: 0

DP
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QD
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQRankSum
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ReadPosRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 175
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 28
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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South Asian
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East Asian
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Other
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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DP
type: SiteQuality
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
type: SiteQuality
SIO_000300: -3.58e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

QD
type: SiteQuality
SIO_000300: 1.092e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

GenotypeQuality
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bin: 1.75e1
variant carriers: 1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 252
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 53
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 257
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 78
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.459999999999999e-2

QD
type: SiteQuality
SIO_000300: 9.58e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 7.42e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.42e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.45574e5

VQSLOD
type: SiteQuality
SIO_000300: 1.0e-3

GenotypeQuality
all individuals: 2
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 270
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 88
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 328
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 16
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

MQ
type: SiteQuality
SIO_000300: 5.662e1

DP
type: SiteQuality
SIO_000300: 1.56062e5

ClippingRankSum
type: SiteQuality
SIO_000300: -1.495e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.32e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -9.22e-1

QD
type: SiteQuality
SIO_000300: 1.297e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.5e0

GenotypeQuality
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bin: 9.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 990
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 257
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 466
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 19
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 228
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.575e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.909999999999999e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.29e-1

DP
type: SiteQuality
SIO_000300: 2.1493e5

MQ
type: SiteQuality
SIO_000300: 5.395e1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 230
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 302
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 325
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1279
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.05e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.33809e5

FS
type: SiteQuality
SIO_000300: 3.01e0

VQSLOD
type: SiteQuality
SIO_000300: 2.76e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.48e-1

QD
type: SiteQuality
SIO_000300: 1.368e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.0e0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1279
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 302
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 230
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 325
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.01e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.05e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.76e-1

QD
type: SiteQuality
SIO_000300: 1.368e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.001e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.0e0

DP
type: SiteQuality
SIO_000300: 2.33809e5

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 544
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 365
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 350
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 68
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1478
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 260
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.38715e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.370000000000001e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.001e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.73e-1

QD
type: SiteQuality
SIO_000300: 6.52e0

MQRankSum
type: SiteQuality
SIO_000300: 5.73e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.73e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.358e0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 8.75e1
variant carriers: 3

GenotypeQuality
all individuals: 42
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 23
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 277
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1533
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 69
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 385
num of homozygotes: 0

Latino
type: Population
allele count: 10
allele frequency: 2.659574468085106e-2
allele num: 376
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.578e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

QD
type: SiteQuality
SIO_000300: 1.286e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.16e-2

VQSLOD
type: SiteQuality
SIO_000300: 9.07e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.23e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

DP
type: SiteQuality
SIO_000300: 2.40609e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.8e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1784
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 432
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 80
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.763668430335097e-3
allele num: 567
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 309
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 447
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.34e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.12e-2

DP
type: SiteQuality
SIO_000300: 2.4888e5

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.819e0

MQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.8e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.61e-1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 543
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 27
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 561
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2242
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 368
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 616
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 95
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.815e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -5.78e-2

QD
type: SiteQuality
SIO_000300: 2.605e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.56e-1

DP
type: SiteQuality
SIO_000300: 2.67001e5

VQSLOD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 47
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 592
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European (Non-Finnish)
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allele count: 1
allele frequency: 2.628811777076761e-4
allele num: 3804
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 167
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 1044
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -4.97e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.132e0

DP
type: SiteQuality
SIO_000300: 3.09745e5

QD
type: SiteQuality
SIO_000300: 1.981e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 756
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 640
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 189
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 1133
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.042752867570386e-3
allele num: 959
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46
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European (Non-Finnish)
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allele count: 1
allele frequency: 2.402113860196973e-4
allele num: 4163
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -5.027e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.199999999999999e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.8e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.8e-1

FS
type: SiteQuality
SIO_000300: 3.916e0

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -3.61e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.17e-1

DP
type: SiteQuality
SIO_000300: 3.16854e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 656
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1169
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 753
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4254
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 189
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.18587e5

MQ
type: SiteQuality
SIO_000300: 5.203e1

VQSLOD
type: SiteQuality
SIO_000300: -4.629e-1

FS
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.868e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.79e-2

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4914
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 217
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 1402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 739
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.185e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.77e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.988e0

MQRankSum
type: SiteQuality
SIO_000300: 8.04e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.04e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.04e-1

DP
type: SiteQuality
SIO_000300: 3.29891e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.04e-1

GenotypeQuality
all individuals: 190
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1101
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.934984520123839e-4
allele num: 5168
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1435
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 237
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 741
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.239e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.72e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.31959e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.186e0

MQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.21e0

QD
type: SiteQuality
SIO_000300: 2.404e1

GenotypeQuality
all individuals: 136
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1158
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5427
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1492
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 739
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 252
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.424e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.58e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.46e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.34365e5

GenotypeQuality
all individuals: 1310
bin: 9.75e1
variant carriers: 1310

GenotypeQuality
all individuals: 145
bin: 4.25e1
variant carriers: 37

GenotypeQuality
all individuals: 150
bin: 5.75e1
variant carriers: 73

African
type: Population
allele count: 43
allele frequency: 4.73568281938326e-2
allele num: 908
num of homozygotes: 2

Latino
type: Population
allele count: 73
allele frequency: 4.536979490366688e-2
allele num: 1609
num of homozygotes: 3

East Asian
type: Population
allele count: 2
allele frequency: 1.737619461337967e-3
allele num: 1151
num of homozygotes: 0

South Asian
type: Population
allele count: 32
allele frequency: 4.204993429697766e-2
allele num: 761
num of homozygotes: 0

Other
type: Population
allele count: 10
allele frequency: 1.428571428571428e-1
allele num: 70
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 101
allele frequency: 2.679045092838196e-1
allele num: 377
num of homozygotes: 5

European (Non-Finnish)
type: Population
allele count: 1593
allele frequency: 2.19845431962462e-1
allele num: 7246
num of homozygotes: 63

VQSLOD
type: SiteQuality
SIO_000300: 9.699999999999999e0

DP
type: SiteQuality
SIO_000300: 3.47664e5

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.74e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.17e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.58e-1

FS
type: SiteQuality
SIO_000300: 5.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1457
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 319
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1139
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 642
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.57952930026852e-4
allele num: 6331
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1629
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.046e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.81e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.794e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.683e0

DP
type: SiteQuality
SIO_000300: 3.42225e5

QD
type: SiteQuality
SIO_000300: 8.74e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.08e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.5e-1

MQ
type: SiteQuality
SIO_000300: 5.926e1

GenotypeQuality
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 5.75e1
variant carriers: 3

GenotypeQuality
all individuals: 648
bin: 3.25e1
variant carriers: 2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1093
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 807
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 2.652519893899204e-3
allele num: 1508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 255
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 592
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.307855626326964e-4
allele num: 5652
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.91e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.56e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.365e0

VQSLOD
type: SiteQuality
SIO_000300: -2.018e2

MQ
type: SiteQuality
SIO_000300: 5.887e1

FS
type: SiteQuality
SIO_000300: 2.11656e2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.7e-2

QD
type: SiteQuality
SIO_000300: 1.7e-1

DP
type: SiteQuality
SIO_000300: 3.34742e5

GenotypeQuality
all individuals: 1770
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7020
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 345
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1341
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 708
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2001
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 8.936550491510277e-4
allele num: 1119
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.047e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.52e-2

FS
type: SiteQuality
SIO_000300: 1.2175e1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.07e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.05e0

VQSLOD
type: SiteQuality
SIO_000300: -3.237e0

DP
type: SiteQuality
SIO_000300: 3.46318e5

QD
type: SiteQuality
SIO_000300: 9.09e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 2
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 342
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 324
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1240
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.555209953343701e-3
allele num: 643
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1917
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1118
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6525
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.461e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.35e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.75e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.83e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.0e0

DP
type: SiteQuality
SIO_000300: 3.30033e5

QD
type: SiteQuality
SIO_000300: 9.92e0

VQSLOD
type: SiteQuality
SIO_000300: -2.095e0

GenotypeQuality
all individuals: 2
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1244
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21987
bin: 2.25e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 331
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1944
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1121
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6583
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 648
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1244
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.25e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.81e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -7.31e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.866e-1

DP
type: SiteQuality
SIO_000300: 3.30301e5

FS
type: SiteQuality
SIO_000300: 7.404e0

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

QD
type: SiteQuality
SIO_000300: 1.099e1

GenotypeQuality
all individuals: 2
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 855
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6352
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1068
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 633
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1865
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 304
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 8.250825082508251e-4
allele num: 1212
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 9.78e-1

DP
type: SiteQuality
SIO_000300: 3.2597e5

ClippingRankSum
type: SiteQuality
SIO_000300: -2.524e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.67e0

VQSLOD
type: SiteQuality
SIO_000300: -1.062e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.93e-2

QD
type: SiteQuality
SIO_000300: 1.257e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.545e0

GenotypeQuality
all individuals: 120
bin: 4.75e1
variant carriers: 20

GenotypeQuality
all individuals: 35
bin: 7.25e1
variant carriers: 25

GenotypeQuality
all individuals: 1096
bin: 6.25e1
variant carriers: 28

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 271
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.347935973041281e-3
allele num: 5935
num of homozygotes: 0

Latino
type: Population
allele count: 52
allele frequency: 2.973127501429388e-2
allele num: 1749
num of homozygotes: 0

African
type: Population
allele count: 597
allele frequency: 4.072305593451569e-1
allele num: 1466
num of homozygotes: 78

Other
type: Population
allele count: 1
allele frequency: 1.587301587301587e-2
allele num: 63
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1128
num of homozygotes: 0

South Asian
type: Population
allele count: 30
allele frequency: 4.754358161648178e-2
allele num: 631
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.44e-1

FS
type: SiteQuality
SIO_000300: 5.4e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.31e0

DP
type: SiteQuality
SIO_000300: 3.16111e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.8e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.44e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

QD
type: SiteQuality
SIO_000300: 1.765e1

GenotypeQuality
all individuals: 460
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24612
bin: 7.5e0
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1592
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 912
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 259
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1050
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5645
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 546
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.33e-2

QD
type: SiteQuality
SIO_000300: 2.102e1

VQSLOD
type: SiteQuality
SIO_000300: -3.303e-1

DP
type: SiteQuality
SIO_000300: 2.99659e5

GenotypeQuality
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1866
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 256
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1561
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 995
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 895
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.826150474799123e-4
allele num: 5476
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 536
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.368e0

FS
type: SiteQuality
SIO_000300: 1.576e0

MQRankSum
type: SiteQuality
SIO_000300: 9.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.96542e5

QD
type: SiteQuality
SIO_000300: 1.095e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.48e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.25e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.5e-2

GenotypeQuality
all individuals: 2
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.165501165501166e-3
allele num: 858
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5267
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 237
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 958
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1476
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 520
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.16e0

VQSLOD
type: SiteQuality
SIO_000300: -3.273e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 6.74e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.06e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.898e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.63e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.88825e5

QD
type: SiteQuality
SIO_000300: 1.552e1

GenotypeQuality
all individuals: 17
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 762
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 207
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 500
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1334
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.048760499897562e-4
allele num: 4881
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -9.441000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.271e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.03e-2

QD
type: SiteQuality
SIO_000300: 1.617e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.71374e5

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.766e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.271e0

GenotypeQuality
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 96
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 677
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2934
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 442
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 491
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.64e-2

DP
type: SiteQuality
SIO_000300: 2.04832e5

VQSLOD
type: SiteQuality
SIO_000300: 1.67e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.912e1

GenotypeQuality
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2535
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 28
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 418
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 420
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 83
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 585
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 346
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.52e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.216e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.98e-2

DP
type: SiteQuality
SIO_000300: 1.9508e5

GenotypeQuality
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 102
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 765
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 126
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 137
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 31
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1124
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.607e1

VQSLOD
type: SiteQuality
SIO_000300: 2.33e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.53e-2

DP
type: SiteQuality
SIO_000300: 1.6151e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1470
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 311
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 83
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 27
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 961
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 76
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 951
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 99
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.900000000000001e-2

QD
type: SiteQuality
SIO_000300: 2.059e1

DP
type: SiteQuality
SIO_000300: 1.54996e5

VQSLOD
type: SiteQuality
SIO_000300: 3.18e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 30
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 9.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 76
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 99
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.051524710830704e-3
allele num: 951
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 27
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 83
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 961
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.54996e5

VQSLOD
type: SiteQuality
SIO_000300: 3.18e0

QD
type: SiteQuality
SIO_000300: 2.059e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.900000000000001e-2

GenotypeQuality
all individuals: 109
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 9.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1017
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 80
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 31
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 861
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 86
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.84e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.98e-1

DP
type: SiteQuality
SIO_000300: 1.59945e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.22e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.57e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.3e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.22e-1

GenotypeQuality
all individuals: 1182
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 3.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 131
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 218
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 164
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1717
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 5.327650506126798e-4
allele num: 1877
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.0e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.91e-2

QD
type: SiteQuality
SIO_000300: 2.651e1

DP
type: SiteQuality
SIO_000300: 2.02509e5

GenotypeQuality
all individuals: 10876
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2712
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 23
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 230
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 191
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3070
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 426
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 68
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2544
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.58476e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

FS
type: SiteQuality
SIO_000300: 1.4e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.11e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.68e-1

QD
type: SiteQuality
SIO_000300: 1.541e1

GenotypeQuality
all individuals: 21
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1606
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 69
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3185
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 450
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 240
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2627
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.61e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.29e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.386e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.06e-2

MQRankSum
type: SiteQuality
SIO_000300: -7.29e-1

DP
type: SiteQuality
SIO_000300: 2.64765e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.29e-1

FS
type: SiteQuality
SIO_000300: 3.522e0

QD
type: SiteQuality
SIO_000300: 6.66e0

GenotypeQuality
all individuals: 3
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 478
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 221
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2717
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 72
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 245
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 482
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3269
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e0

VQSLOD
type: SiteQuality
SIO_000300: -1.949e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.06e-1

FS
type: SiteQuality
SIO_000300: 2.456e0

QD
type: SiteQuality
SIO_000300: 2.29e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.99e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

MQ
type: SiteQuality
SIO_000300: 5.79e1