19-49969484-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49969484
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49969484
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 12754
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000469507
  ensembl transcript: ENST00000600265
  gene symbol: ALDH16A1
  hgvsc: ENST00000600265.1:c.*3G>A
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000410142
  ensembl transcript: ENST00000455361
  gene symbol: ALDH16A1
  hgvsc: ENST00000455361.2:c.1729G>A
  hgvsp: ENSP00000410142.1:p.Ala577Thr
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000599652
  gene symbol: ALDH16A1
  hgvsc: ENST00000599652.1:n.2028G>A
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269469
  ensembl protein: ENSP00000470318
  ensembl transcript: ENST00000599536
  gene symbol: CTD-3148I10.9
  hgvsc: ENST00000599536.1:c.*120+1465G>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000398675
  ensembl transcript: ENST00000433981
  gene symbol: ALDH16A1
  hgvsc: ENST00000433981.2:c.1387G>A
  hgvsp: ENSP00000398675.2:p.Ala463Thr
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000470160
  ensembl transcript: ENST00000593417
  gene symbol: ALDH16A1
  hgvsc: ENST00000593417.1:c.*1340G>A
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000293350
  ensembl transcript: ENST00000293350
  gene symbol: ALDH16A1
  hgvsc: ENST00000293350.4:c.1882G>A
  hgvsp: ENSP00000293350.3:p.Ala628Thr
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000445088
  ensembl transcript: ENST00000540132
  gene symbol: ALDH16A1
  hgvsc: ENST00000540132.1:c.1393G>A
  hgvsp: ENSP00000445088.1:p.Ala465Thr
  variant of: http://identifiers.org/hgnc/28114
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4110
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1432
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27362
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22680
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1797
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1246
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ala628Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: African
population: Latino
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

19-49969490-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49969490
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49969490
    reference: chr 19
allele count: 1
allele frequency: 9.187798603454613e-5
allele num: 10884
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000293350
  ensembl transcript: ENST00000293350
  gene symbol: ALDH16A1
  hgvsc: ENST00000293350.4:c.1888C>T
  hgvsp: ENSP00000293350.3:p.Arg630Ter
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000469507
  ensembl transcript: ENST00000600265
  gene symbol: ALDH16A1
  hgvsc: ENST00000600265.1:c.*9C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000470160
  ensembl transcript: ENST00000593417
  gene symbol: ALDH16A1
  hgvsc: ENST00000593417.1:c.*1346C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000445088
  ensembl transcript: ENST00000540132
  gene symbol: ALDH16A1
  hgvsc: ENST00000540132.1:c.1399C>T
  hgvsp: ENSP00000445088.1:p.Arg467Ter
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000398675
  ensembl transcript: ENST00000433981
  gene symbol: ALDH16A1
  hgvsc: ENST00000433981.2:c.1393C>T
  hgvsp: ENSP00000398675.2:p.Arg465Ter
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000410142
  ensembl transcript: ENST00000455361
  gene symbol: ALDH16A1
  hgvsc: ENST00000455361.2:c.1735C>T
  hgvsp: ENSP00000410142.1:p.Arg579Ter
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000599652
  gene symbol: ALDH16A1
  hgvsc: ENST00000599652.1:n.2034C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269469
  ensembl protein: ENSP00000470318
  ensembl transcript: ENST00000599536
  gene symbol: CTD-3148I10.9
  hgvsc: ENST00000599536.1:c.*120+1471C>T
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29255
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20683
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3583
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2842
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1906
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1422
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18289
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg630Ter
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

19-49969491-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49969491
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49969491
    reference: chr 19
allele count: 1
allele frequency: 9.120758847136082e-5
allele num: 10964
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000469507
  ensembl transcript: ENST00000600265
  gene symbol: ALDH16A1
  hgvsc: ENST00000600265.1:c.*10G>A
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000398675
  ensembl transcript: ENST00000433981
  gene symbol: ALDH16A1
  hgvsc: ENST00000433981.2:c.1394G>A
  hgvsp: ENSP00000398675.2:p.Arg465Gln
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000470160
  ensembl transcript: ENST00000593417
  gene symbol: ALDH16A1
  hgvsc: ENST00000593417.1:c.*1347G>A
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000293350
  ensembl transcript: ENST00000293350
  gene symbol: ALDH16A1
  hgvsc: ENST00000293350.4:c.1889G>A
  hgvsp: ENSP00000293350.3:p.Arg630Gln
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269469
  ensembl protein: ENSP00000470318
  ensembl transcript: ENST00000599536
  gene symbol: CTD-3148I10.9
  hgvsc: ENST00000599536.1:c.*120+1472G>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000410142
  ensembl transcript: ENST00000455361
  gene symbol: ALDH16A1
  hgvsc: ENST00000455361.2:c.1736G>A
  hgvsp: ENSP00000410142.1:p.Arg579Gln
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000445088
  ensembl transcript: ENST00000540132
  gene symbol: ALDH16A1
  hgvsc: ENST00000540132.1:c.1400G>A
  hgvsp: ENSP00000445088.1:p.Arg467Gln
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000599652
  gene symbol: ALDH16A1
  hgvsc: ENST00000599652.1:n.2035G>A
  variant of: http://identifiers.org/hgnc/28114
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29304
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20703
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3541
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 609
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1721
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg630Gln
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: QD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

19-49969498-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49969498
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49969498
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 9690
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000469507
  ensembl transcript: ENST00000600265
  gene symbol: ALDH16A1
  hgvsc: ENST00000600265.1:c.*17G>A
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269469
  ensembl protein: ENSP00000470318
  ensembl transcript: ENST00000599536
  gene symbol: CTD-3148I10.9
  hgvsc: ENST00000599536.1:c.*120+1479G>A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000470160
  ensembl transcript: ENST00000593417
  gene symbol: ALDH16A1
  hgvsc: ENST00000593417.1:c.*1354G>A
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000445088
  ensembl transcript: ENST00000540132
  gene symbol: ALDH16A1
  hgvsc: ENST00000540132.1:c.1407G>A
  hgvsp: ENST00000540132.1:c.1407G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000398675
  ensembl transcript: ENST00000433981
  gene symbol: ALDH16A1
  hgvsc: ENST00000433981.2:c.1401G>A
  hgvsp: ENST00000433981.2:c.1401G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000599652
  gene symbol: ALDH16A1
  hgvsc: ENST00000599652.1:n.2042G>A
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000410142
  ensembl transcript: ENST00000455361
  gene symbol: ALDH16A1
  hgvsc: ENST00000455361.2:c.1743G>A
  hgvsp: ENST00000455361.2:c.1743G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000293350
  ensembl transcript: ENST00000293350
  gene symbol: ALDH16A1
  hgvsc: ENST00000293350.4:c.1896G>A
  hgvsp: ENST00000293350.4:c.1896G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28114
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30553
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 958
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19405
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3082
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 431
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16853
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1408
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1153
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29425
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2662
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg632Arg
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD

19-49969500-CG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49969500
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49969499
    reference: chr 19
allele count: 2
allele frequency: 2.107037505267594e-4
allele num: 9492
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000398675
  ensembl transcript: ENST00000433981
  gene symbol: ALDH16A1
  hgvsc: ENST00000433981.2:c.1404delG
  hgvsp: ENSP00000398675.2:p.Trp469GlyfsTer14
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000470160
  ensembl transcript: ENST00000593417
  gene symbol: ALDH16A1
  hgvsc: ENST00000593417.1:c.*1357delG
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000410142
  ensembl transcript: ENST00000455361
  gene symbol: ALDH16A1
  hgvsc: ENST00000455361.2:c.1746delG
  hgvsp: ENSP00000410142.1:p.Trp583GlyfsTer14
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000469507
  ensembl transcript: ENST00000600265
  gene symbol: ALDH16A1
  hgvsc: ENST00000600265.1:c.*20delG
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000293350
  ensembl transcript: ENST00000293350
  gene symbol: ALDH16A1
  hgvsc: ENST00000293350.4:c.1899delG
  hgvsp: ENSP00000293350.3:p.Trp634GlyfsTer14
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000445088
  ensembl transcript: ENST00000540132
  gene symbol: ALDH16A1
  hgvsc: ENST00000540132.1:c.1410delG
  hgvsp: ENSP00000445088.1:p.Trp471GlyfsTer14
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269469
  ensembl protein: ENSP00000470318
  ensembl transcript: ENST00000599536
  gene symbol: CTD-3148I10.9
  hgvsc: ENST00000599536.1:c.*120+1482delG
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000599652
  gene symbol: ALDH16A1
  hgvsc: ENST00000599652.1:n.2045delG
  variant of: http://identifiers.org/hgnc/28114
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19258
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30679
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3047
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1881
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Trp634GlyfsTer14
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
reference allele: CG
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

19-49969501-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49969501
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49969501
    reference: chr 19
allele count: 382
allele frequency: 3.926002055498459e-2
allele num: 9730
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000398675
  ensembl transcript: ENST00000433981
  gene symbol: ALDH16A1
  hgvsc: ENST00000433981.2:c.1404G>A
  hgvsp: ENST00000433981.2:c.1404G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000293350
  ensembl transcript: ENST00000293350
  gene symbol: ALDH16A1
  hgvsc: ENST00000293350.4:c.1899G>A
  hgvsp: ENST00000293350.4:c.1899G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000445088
  ensembl transcript: ENST00000540132
  gene symbol: ALDH16A1
  hgvsc: ENST00000540132.1:c.1410G>A
  hgvsp: ENST00000540132.1:c.1410G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269469
  ensembl protein: ENSP00000470318
  ensembl transcript: ENST00000599536
  gene symbol: CTD-3148I10.9
  hgvsc: ENST00000599536.1:c.*120+1482G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000599652
  gene symbol: ALDH16A1
  hgvsc: ENST00000599652.1:n.2045G>A
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000470160
  ensembl transcript: ENST00000593417
  gene symbol: ALDH16A1
  hgvsc: ENST00000593417.1:c.*1357G>A
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000469507
  ensembl transcript: ENST00000600265
  gene symbol: ALDH16A1
  hgvsc: ENST00000600265.1:c.*20G>A
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000410142
  ensembl transcript: ENST00000455361
  gene symbol: ALDH16A1
  hgvsc: ENST00000455361.2:c.1746G>A
  hgvsp: ENST00000455361.2:c.1746G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28114
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 3.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 30587
  bin: 2.5e0
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 3.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 2.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 19280
  bin: 7.5e0
  variant carriers: 288
genotype depth: GenotypeDepth
  all individuals: 3075
  bin: 1.25e1
  variant carriers: 177
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 1.75e1
  variant carriers: 80
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 2.25e1
  variant carriers: 50
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 3.25e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1805
  bin: 2.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 3.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 6.75e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 9.75e1
  variant carriers: 348
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 8.25e1
  variant carriers: 23
hgvs: p.Ala633Ala
num of homozygotes: 14
population: African
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP

19-49969503-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49969503
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49969503
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 8690
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000410142
  ensembl transcript: ENST00000455361
  gene symbol: ALDH16A1
  hgvsc: ENST00000455361.2:c.1748G>T
  hgvsp: ENSP00000410142.1:p.Trp583Leu
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000470160
  ensembl transcript: ENST00000593417
  gene symbol: ALDH16A1
  hgvsc: ENST00000593417.1:c.*1359G>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269469
  ensembl protein: ENSP00000470318
  ensembl transcript: ENST00000599536
  gene symbol: CTD-3148I10.9
  hgvsc: ENST00000599536.1:c.*120+1484G>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000599652
  gene symbol: ALDH16A1
  hgvsc: ENST00000599652.1:n.2047G>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000398675
  ensembl transcript: ENST00000433981
  gene symbol: ALDH16A1
  hgvsc: ENST00000433981.2:c.1406G>T
  hgvsp: ENSP00000398675.2:p.Trp469Leu
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000469507
  ensembl transcript: ENST00000600265
  gene symbol: ALDH16A1
  hgvsc: ENST00000600265.1:c.*22G>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000445088
  ensembl transcript: ENST00000540132
  gene symbol: ALDH16A1
  hgvsc: ENST00000540132.1:c.1412G>T
  hgvsp: ENSP00000445088.1:p.Trp471Leu
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000293350
  ensembl transcript: ENST00000293350
  gene symbol: ALDH16A1
  hgvsc: ENST00000293350.4:c.1901G>T
  hgvsp: ENSP00000293350.3:p.Trp634Leu
  variant of: http://identifiers.org/hgnc/28114
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2950
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31534
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18017
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 501
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30256
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1353
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2442
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Trp634Leu
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

19-49969508-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49969508
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49969508
    reference: chr 19
allele count: 1
allele frequency: 1.201056930098487e-4
allele num: 8326
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000293350
  ensembl transcript: ENST00000293350
  gene symbol: ALDH16A1
  hgvsc: ENST00000293350.4:c.1906G>A
  hgvsp: ENSP00000293350.3:p.Ala636Thr
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000410142
  ensembl transcript: ENST00000455361
  gene symbol: ALDH16A1
  hgvsc: ENST00000455361.2:c.1753G>A
  hgvsp: ENSP00000410142.1:p.Ala585Thr
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000445088
  ensembl transcript: ENST00000540132
  gene symbol: ALDH16A1
  hgvsc: ENST00000540132.1:c.1417G>A
  hgvsp: ENSP00000445088.1:p.Ala473Thr
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000469507
  ensembl transcript: ENST00000600265
  gene symbol: ALDH16A1
  hgvsc: ENST00000600265.1:c.*27G>A
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000470160
  ensembl transcript: ENST00000593417
  gene symbol: ALDH16A1
  hgvsc: ENST00000593417.1:c.*1364G>A
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269469
  ensembl protein: ENSP00000470318
  ensembl transcript: ENST00000599536
  gene symbol: CTD-3148I10.9
  hgvsc: ENST00000599536.1:c.*120+1489G>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000398675
  ensembl transcript: ENST00000433981
  gene symbol: ALDH16A1
  hgvsc: ENST00000433981.2:c.1411G>A
  hgvsp: ENSP00000398675.2:p.Ala471Thr
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000599652
  gene symbol: ALDH16A1
  hgvsc: ENST00000599652.1:n.2052G>A
  variant of: http://identifiers.org/hgnc/28114
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17296
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2744
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32163
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30924
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 998
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ala636Thr
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: G
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum

19-49969512-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49969512
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49969512
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 7802
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000293350
  ensembl transcript: ENST00000293350
  gene symbol: ALDH16A1
  hgvsc: ENST00000293350.4:c.1910G>A
  hgvsp: ENSP00000293350.3:p.Arg637Gln
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000398675
  ensembl transcript: ENST00000433981
  gene symbol: ALDH16A1
  hgvsc: ENST00000433981.2:c.1415G>A
  hgvsp: ENSP00000398675.2:p.Arg472Gln
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000445088
  ensembl transcript: ENST00000540132
  gene symbol: ALDH16A1
  hgvsc: ENST00000540132.1:c.1421G>A
  hgvsp: ENSP00000445088.1:p.Arg474Gln
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000410142
  ensembl transcript: ENST00000455361
  gene symbol: ALDH16A1
  hgvsc: ENST00000455361.2:c.1757G>A
  hgvsp: ENSP00000410142.1:p.Arg586Gln
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269469
  ensembl protein: ENSP00000470318
  ensembl transcript: ENST00000599536
  gene symbol: CTD-3148I10.9
  hgvsc: ENST00000599536.1:c.*120+1493G>A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000470160
  ensembl transcript: ENST00000593417
  gene symbol: ALDH16A1
  hgvsc: ENST00000593417.1:c.*1368G>A
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000469507
  ensembl transcript: ENST00000600265
  gene symbol: ALDH16A1
  hgvsc: ENST00000600265.1:c.*31G>A
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000599652
  gene symbol: ALDH16A1
  hgvsc: ENST00000599652.1:n.2056G>A
  variant of: http://identifiers.org/hgnc/28114
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 32771
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16425
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2583
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14705
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1996
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1668
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31559
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg637Gln
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

19-49969522-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49969522
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49969522
    reference: chr 19
allele count: 123
allele frequency: 1.768257619321449e-2
allele num: 6956
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000470160
  ensembl transcript: ENST00000593417
  gene symbol: ALDH16A1
  hgvsc: ENST00000593417.1:c.*1378C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000599652
  gene symbol: ALDH16A1
  hgvsc: ENST00000599652.1:n.2066C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000398675
  ensembl transcript: ENST00000433981
  gene symbol: ALDH16A1
  hgvsc: ENST00000433981.2:c.1425C>T
  hgvsp: ENST00000433981.2:c.1425C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000469507
  ensembl transcript: ENST00000600265
  gene symbol: ALDH16A1
  hgvsc: ENST00000600265.1:c.*41C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269469
  ensembl protein: ENSP00000470318
  ensembl transcript: ENST00000599536
  gene symbol: CTD-3148I10.9
  hgvsc: ENST00000599536.1:c.*120+1503C>T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000445088
  ensembl transcript: ENST00000540132
  gene symbol: ALDH16A1
  hgvsc: ENST00000540132.1:c.1431C>T
  hgvsp: ENST00000540132.1:c.1431C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000293350
  ensembl transcript: ENST00000293350
  gene symbol: ALDH16A1
  hgvsc: ENST00000293350.4:c.1920C>T
  hgvsp: ENST00000293350.4:c.1920C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000410142
  ensembl transcript: ENST00000455361
  gene symbol: ALDH16A1
  hgvsc: ENST00000455361.2:c.1767C>T
  hgvsp: ENST00000455361.2:c.1767C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28114
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13817
  bin: 7.5e0
  variant carriers: 106
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 1.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 2.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 3.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 2357
  bin: 1.25e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 34145
  bin: 2.5e0
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 2.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 8.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 9.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 1465
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 6.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 7.25e1
  variant carriers: 6
hgvs: p.Ala640Ala
num of homozygotes: 1
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: Latino
population: East Asian
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

19-49969535-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49969535
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49969535
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 5436
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000293350
  ensembl transcript: ENST00000293350
  gene symbol: ALDH16A1
  hgvsc: ENST00000293350.4:c.1933C>T
  hgvsp: ENST00000293350.4:c.1933C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000445088
  ensembl transcript: ENST00000540132
  gene symbol: ALDH16A1
  hgvsc: ENST00000540132.1:c.1444C>T
  hgvsp: ENST00000540132.1:c.1444C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000469507
  ensembl transcript: ENST00000600265
  gene symbol: ALDH16A1
  hgvsc: ENST00000600265.1:c.*54C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269469
  ensembl protein: ENSP00000470318
  ensembl transcript: ENST00000599536
  gene symbol: CTD-3148I10.9
  hgvsc: ENST00000599536.1:c.*120+1516C>T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000398675
  ensembl transcript: ENST00000433981
  gene symbol: ALDH16A1
  hgvsc: ENST00000433981.2:c.1438C>T
  hgvsp: ENST00000433981.2:c.1438C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000470160
  ensembl transcript: ENST00000593417
  gene symbol: ALDH16A1
  hgvsc: ENST00000593417.1:c.*1391C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000410142
  ensembl transcript: ENST00000455361
  gene symbol: ALDH16A1
  hgvsc: ENST00000455361.2:c.1780C>T
  hgvsp: ENST00000455361.2:c.1780C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000599652
  gene symbol: ALDH16A1
  hgvsc: ENST00000599652.1:n.2079C>T
  variant of: http://identifiers.org/hgnc/28114
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1921
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10337
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35747
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33985
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2604
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 558
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1171
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Leu645Leu
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: QD

19-49969565-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49969565
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49969565
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 2550
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000599652
  gene symbol: ALDH16A1
  hgvsc: ENST00000599652.1:n.2084+25C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000293350
  ensembl transcript: ENST00000293350
  gene symbol: ALDH16A1
  hgvsc: ENST00000293350.4:c.1938+25C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000398675
  ensembl transcript: ENST00000433981
  gene symbol: ALDH16A1
  hgvsc: ENST00000433981.2:c.1443+25C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269469
  ensembl protein: ENSP00000470318
  ensembl transcript: ENST00000599536
  gene symbol: CTD-3148I10.9
  hgvsc: ENST00000599536.1:c.*120+1546C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000410142
  ensembl transcript: ENST00000455361
  gene symbol: ALDH16A1
  hgvsc: ENST00000455361.2:c.1785+25C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000469507
  ensembl transcript: ENST00000600265
  gene symbol: ALDH16A1
  hgvsc: ENST00000600265.1:c.*59+25C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000445088
  ensembl transcript: ENST00000540132
  gene symbol: ALDH16A1
  hgvsc: ENST00000540132.1:c.1449+25C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000470160
  ensembl transcript: ENST00000593417
  gene symbol: ALDH16A1
  hgvsc: ENST00000593417.1:c.*1396+25C>T
  variant of: http://identifiers.org/hgnc/28114
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35744
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5301
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3410
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4426
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum

19-49969578-C-CG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49969578
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49969579
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 1794
alternate allele: CG
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000599652
  gene symbol: ALDH16A1
  hgvsc: ENST00000599652.1:n.2084+42dupG
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000445088
  ensembl transcript: ENST00000540132
  gene symbol: ALDH16A1
  hgvsc: ENST00000540132.1:c.1449+42dupG
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000470160
  ensembl transcript: ENST00000593417
  gene symbol: ALDH16A1
  hgvsc: ENST00000593417.1:c.*1396+42dupG
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000469507
  ensembl transcript: ENST00000600265
  gene symbol: ALDH16A1
  hgvsc: ENST00000600265.1:c.*59+42dupG
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000293350
  ensembl transcript: ENST00000293350
  gene symbol: ALDH16A1
  hgvsc: ENST00000293350.4:c.1938+42dupG
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269469
  ensembl protein: ENSP00000470318
  ensembl transcript: ENST00000599536
  gene symbol: CTD-3148I10.9
  hgvsc: ENST00000599536.1:c.*120+1563dupG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000410142
  ensembl transcript: ENST00000455361
  gene symbol: ALDH16A1
  hgvsc: ENST00000455361.2:c.1785+42dupG
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000398675
  ensembl transcript: ENST00000433981
  gene symbol: ALDH16A1
  hgvsc: ENST00000433981.2:c.1443+42dupG
  variant of: http://identifiers.org/hgnc/28114
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 34420
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4568
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7700
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1029
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26948
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1943
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

19-49969578-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49969578
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49969578
    reference: chr 19
allele count: 3
allele frequency: 1.672240802675585e-3
allele num: 1794
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000445088
  ensembl transcript: ENST00000540132
  gene symbol: ALDH16A1
  hgvsc: ENST00000540132.1:c.1449+38C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000398675
  ensembl transcript: ENST00000433981
  gene symbol: ALDH16A1
  hgvsc: ENST00000433981.2:c.1443+38C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000469507
  ensembl transcript: ENST00000600265
  gene symbol: ALDH16A1
  hgvsc: ENST00000600265.1:c.*59+38C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000599652
  gene symbol: ALDH16A1
  hgvsc: ENST00000599652.1:n.2084+38C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000293350
  ensembl transcript: ENST00000293350
  gene symbol: ALDH16A1
  hgvsc: ENST00000293350.4:c.1938+38C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000470160
  ensembl transcript: ENST00000593417
  gene symbol: ALDH16A1
  hgvsc: ENST00000593417.1:c.*1396+38C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269469
  ensembl protein: ENSP00000470318
  ensembl transcript: ENST00000599536
  gene symbol: CTD-3148I10.9
  hgvsc: ENST00000599536.1:c.*120+1559C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000410142
  ensembl transcript: ENST00000455361
  gene symbol: ALDH16A1
  hgvsc: ENST00000455361.2:c.1785+38C>T
  variant of: http://identifiers.org/hgnc/28114
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34420
  bin: 2.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4568
  bin: 7.5e0
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1698
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1029
  bin: 1.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD

19-49969579-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49969579
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49969579
    reference: chr 19
allele count: 23
allele frequency: 1.295045045045045e-2
allele num: 1776
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000410142
  ensembl transcript: ENST00000455361
  gene symbol: ALDH16A1
  hgvsc: ENST00000455361.2:c.1785+39G>A
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269469
  ensembl protein: ENSP00000470318
  ensembl transcript: ENST00000599536
  gene symbol: CTD-3148I10.9
  hgvsc: ENST00000599536.1:c.*120+1560G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000599652
  gene symbol: ALDH16A1
  hgvsc: ENST00000599652.1:n.2084+39G>A
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000445088
  ensembl transcript: ENST00000540132
  gene symbol: ALDH16A1
  hgvsc: ENST00000540132.1:c.1449+39G>A
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000470160
  ensembl transcript: ENST00000593417
  gene symbol: ALDH16A1
  hgvsc: ENST00000593417.1:c.*1396+39G>A
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000293350
  ensembl transcript: ENST00000293350
  gene symbol: ALDH16A1
  hgvsc: ENST00000293350.4:c.1938+39G>A
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000469507
  ensembl transcript: ENST00000600265
  gene symbol: ALDH16A1
  hgvsc: ENST00000600265.1:c.*59+39G>A
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000398675
  ensembl transcript: ENST00000433981
  gene symbol: ALDH16A1
  hgvsc: ENST00000433981.2:c.1443+39G>A
  variant of: http://identifiers.org/hgnc/28114
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34456
  bin: 2.5e0
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4569
  bin: 7.5e0
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 1.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7532
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 6.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 939
  bin: 1.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 6.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 9.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 3
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: DP
site quality: ClippingRankSum

19-49969582-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49969582
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49969582
    reference: chr 19
allele count: 2
allele frequency: 1.199040767386091e-3
allele num: 1668
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000469507
  ensembl transcript: ENST00000600265
  gene symbol: ALDH16A1
  hgvsc: ENST00000600265.1:c.*59+42G>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000599652
  gene symbol: ALDH16A1
  hgvsc: ENST00000599652.1:n.2084+42G>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000470160
  ensembl transcript: ENST00000593417
  gene symbol: ALDH16A1
  hgvsc: ENST00000593417.1:c.*1396+42G>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000410142
  ensembl transcript: ENST00000455361
  gene symbol: ALDH16A1
  hgvsc: ENST00000455361.2:c.1785+42G>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000445088
  ensembl transcript: ENST00000540132
  gene symbol: ALDH16A1
  hgvsc: ENST00000540132.1:c.1449+42G>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269469
  ensembl protein: ENSP00000470318
  ensembl transcript: ENST00000599536
  gene symbol: CTD-3148I10.9
  hgvsc: ENST00000599536.1:c.*120+1563G>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000398675
  ensembl transcript: ENST00000433981
  gene symbol: ALDH16A1
  hgvsc: ENST00000433981.2:c.1443+42G>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000293350
  ensembl transcript: ENST00000293350
  gene symbol: ALDH16A1
  hgvsc: ENST00000293350.4:c.1938+42G>T
  variant of: http://identifiers.org/hgnc/28114
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4530
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34242
  bin: 2.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8855
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25529
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1169
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Other
population: European (Finnish)
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum

19-49969582-GT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49969582
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49969581
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 1668
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000293350
  ensembl transcript: ENST00000293350
  gene symbol: ALDH16A1
  hgvsc: ENST00000293350.4:c.1938+43delT
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000445088
  ensembl transcript: ENST00000540132
  gene symbol: ALDH16A1
  hgvsc: ENST00000540132.1:c.1449+43delT
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000469507
  ensembl transcript: ENST00000600265
  gene symbol: ALDH16A1
  hgvsc: ENST00000600265.1:c.*59+43delT
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000599652
  gene symbol: ALDH16A1
  hgvsc: ENST00000599652.1:n.2084+43delT
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000470160
  ensembl transcript: ENST00000593417
  gene symbol: ALDH16A1
  hgvsc: ENST00000593417.1:c.*1396+43delT
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269469
  ensembl protein: ENSP00000470318
  ensembl transcript: ENST00000599536
  gene symbol: CTD-3148I10.9
  hgvsc: ENST00000599536.1:c.*120+1564delT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000398675
  ensembl transcript: ENST00000433981
  gene symbol: ALDH16A1
  hgvsc: ENST00000433981.2:c.1443+43delT
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000410142
  ensembl transcript: ENST00000455361
  gene symbol: ALDH16A1
  hgvsc: ENST00000455361.2:c.1785+43delT
  variant of: http://identifiers.org/hgnc/28114
canonical: true
consequence: intron
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34242
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4530
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1169
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1456
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
reference allele: GT
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: InbreedingCoeff

19-49969583-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49969583
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49969583
    reference: chr 19
allele count: 24
allele frequency: 1.435406698564593e-2
allele num: 1672
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000410142
  ensembl transcript: ENST00000455361
  gene symbol: ALDH16A1
  hgvsc: ENST00000455361.2:c.1785+43T>G
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000398675
  ensembl transcript: ENST00000433981
  gene symbol: ALDH16A1
  hgvsc: ENST00000433981.2:c.1443+43T>G
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000599652
  gene symbol: ALDH16A1
  hgvsc: ENST00000599652.1:n.2084+43T>G
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000445088
  ensembl transcript: ENST00000540132
  gene symbol: ALDH16A1
  hgvsc: ENST00000540132.1:c.1449+43T>G
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000470160
  ensembl transcript: ENST00000593417
  gene symbol: ALDH16A1
  hgvsc: ENST00000593417.1:c.*1396+43T>G
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269469
  ensembl protein: ENSP00000470318
  ensembl transcript: ENST00000599536
  gene symbol: CTD-3148I10.9
  hgvsc: ENST00000599536.1:c.*120+1564T>G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000469507
  ensembl transcript: ENST00000600265
  gene symbol: ALDH16A1
  hgvsc: ENST00000600265.1:c.*59+43T>G
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000293350
  ensembl transcript: ENST00000293350
  gene symbol: ALDH16A1
  hgvsc: ENST00000293350.4:c.1938+43T>G
  variant of: http://identifiers.org/hgnc/28114
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4526
  bin: 7.5e0
  variant carriers: 75
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34078
  bin: 2.5e0
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 1.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9211
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 9.75e1
  variant carriers: 33
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 8.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 1988
  bin: 1.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 8.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1148
  bin: 1.75e1
  variant carriers: 8
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ

19-49969586-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49969586
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49969586
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 1638
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000445088
  ensembl transcript: ENST00000540132
  gene symbol: ALDH16A1
  hgvsc: ENST00000540132.1:c.1449+46G>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000469507
  ensembl transcript: ENST00000600265
  gene symbol: ALDH16A1
  hgvsc: ENST00000600265.1:c.*59+46G>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000599652
  gene symbol: ALDH16A1
  hgvsc: ENST00000599652.1:n.2084+46G>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000470160
  ensembl transcript: ENST00000593417
  gene symbol: ALDH16A1
  hgvsc: ENST00000593417.1:c.*1396+46G>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000410142
  ensembl transcript: ENST00000455361
  gene symbol: ALDH16A1
  hgvsc: ENST00000455361.2:c.1785+46G>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000398675
  ensembl transcript: ENST00000433981
  gene symbol: ALDH16A1
  hgvsc: ENST00000433981.2:c.1443+46G>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269469
  ensembl protein: ENSP00000470318
  ensembl transcript: ENST00000599536
  gene symbol: CTD-3148I10.9
  hgvsc: ENST00000599536.1:c.*120+1567G>T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000293350
  ensembl transcript: ENST00000293350
  gene symbol: ALDH16A1
  hgvsc: ENST00000293350.4:c.1938+46G>T
  variant of: http://identifiers.org/hgnc/28114
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4503
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34293
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24742
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1266
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
reference allele: G
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

19-49971592-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49971592
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49971592
    reference: chr 19
allele count: 73
allele frequency: 6.424925189227248e-4
allele num: 113620
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000469507
  ensembl transcript: ENST00000600265
  gene symbol: ALDH16A1
  hgvsc: ENST00000600265.1:c.*60-46C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000445088
  ensembl transcript: ENST00000540132
  gene symbol: ALDH16A1
  hgvsc: ENST00000540132.1:c.1450-46C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000594549
  gene symbol: ALDH16A1
  hgvsc: ENST00000594549.1:n.43C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000398675
  ensembl transcript: ENST00000433981
  gene symbol: ALDH16A1
  hgvsc: ENST00000433981.2:c.1444-46C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269469
  ensembl protein: ENSP00000470318
  ensembl transcript: ENST00000599536
  gene symbol: CTD-3148I10.9
  hgvsc: ENST00000599536.1:c.*120+3573C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000410142
  ensembl transcript: ENST00000455361
  gene symbol: ALDH16A1
  hgvsc: ENST00000455361.2:c.1786-46C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000470160
  ensembl transcript: ENST00000593417
  gene symbol: ALDH16A1
  hgvsc: ENST00000593417.1:c.*1397-46C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000599652
  gene symbol: ALDH16A1
  hgvsc: ENST00000599652.1:n.2085-46C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000293350
  ensembl transcript: ENST00000293350
  gene symbol: ALDH16A1
  hgvsc: ENST00000293350.4:c.1939-46C>T
  variant of: http://identifiers.org/hgnc/28114
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2597
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3342
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8736
  bin: 3.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 7041
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2249
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 6884
  bin: 4.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 8482
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5220
  bin: 4.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 5282
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3390
  bin: 5.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 2512
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2062
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3466
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum

19-49971593-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49971593
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49971593
    reference: chr 19
allele count: 1
allele frequency: 8.774084862948794e-6
allele num: 113972
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000445088
  ensembl transcript: ENST00000540132
  gene symbol: ALDH16A1
  hgvsc: ENST00000540132.1:c.1450-45G>C
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000293350
  ensembl transcript: ENST00000293350
  gene symbol: ALDH16A1
  hgvsc: ENST00000293350.4:c.1939-45G>C
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000599652
  gene symbol: ALDH16A1
  hgvsc: ENST00000599652.1:n.2085-45G>C
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000398675
  ensembl transcript: ENST00000433981
  gene symbol: ALDH16A1
  hgvsc: ENST00000433981.2:c.1444-45G>C
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000410142
  ensembl transcript: ENST00000455361
  gene symbol: ALDH16A1
  hgvsc: ENST00000455361.2:c.1786-45G>C
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000469507
  ensembl transcript: ENST00000600265
  gene symbol: ALDH16A1
  hgvsc: ENST00000600265.1:c.*60-45G>C
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000594549
  gene symbol: ALDH16A1
  hgvsc: ENST00000594549.1:n.44G>C
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269469
  ensembl protein: ENSP00000470318
  ensembl transcript: ENST00000599536
  gene symbol: CTD-3148I10.9
  hgvsc: ENST00000599536.1:c.*120+3574G>C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000470160
  ensembl transcript: ENST00000593417
  gene symbol: ALDH16A1
  hgvsc: ENST00000593417.1:c.*1397-45G>C
  variant of: http://identifiers.org/hgnc/28114
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3387
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2248
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6891
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5622
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5232
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7180
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2587
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1975
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3278
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8536
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8831
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3523
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2223
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2103
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ

19-49971596-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49971596
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49971596
    reference: chr 19
allele count: 40032
allele frequency: 3.484619000365592e-1
allele num: 114882
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000445088
  ensembl transcript: ENST00000540132
  gene symbol: ALDH16A1
  hgvsc: ENST00000540132.1:c.1450-42C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000599652
  gene symbol: ALDH16A1
  hgvsc: ENST00000599652.1:n.2085-42C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000469507
  ensembl transcript: ENST00000600265
  gene symbol: ALDH16A1
  hgvsc: ENST00000600265.1:c.*60-42C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000470160
  ensembl transcript: ENST00000593417
  gene symbol: ALDH16A1
  hgvsc: ENST00000593417.1:c.*1397-42C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000398675
  ensembl transcript: ENST00000433981
  gene symbol: ALDH16A1
  hgvsc: ENST00000433981.2:c.1444-42C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000293350
  ensembl transcript: ENST00000293350
  gene symbol: ALDH16A1
  hgvsc: ENST00000293350.4:c.1939-42C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000594549
  gene symbol: ALDH16A1
  hgvsc: ENST00000594549.1:n.47C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269469
  ensembl protein: ENSP00000470318
  ensembl transcript: ENST00000599536
  gene symbol: CTD-3148I10.9
  hgvsc: ENST00000599536.1:c.*120+3577C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000410142
  ensembl transcript: ENST00000455361
  gene symbol: ALDH16A1
  hgvsc: ENST00000455361.2:c.1786-42C>T
  variant of: http://identifiers.org/hgnc/28114
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3482
  bin: 5.75e1
  variant carriers: 2692
genotype depth: GenotypeDepth
  all individuals: 4049
  bin: 2.25e1
  variant carriers: 1547
genotype depth: GenotypeDepth
  all individuals: 2594
  bin: 6.25e1
  variant carriers: 2067
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 8.25e1
  variant carriers: 494
genotype depth: GenotypeDepth
  all individuals: 4585
  bin: 5.25e1
  variant carriers: 3283
genotype depth: GenotypeDepth
  all individuals: 6778
  bin: 4.25e1
  variant carriers: 3663
genotype depth: GenotypeDepth
  all individuals: 7373
  bin: 3.75e1
  variant carriers: 3362
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 9.25e1
  variant carriers: 186
genotype depth: GenotypeDepth
  all individuals: 5414
  bin: 2.75e1
  variant carriers: 1891
genotype depth: GenotypeDepth
  all individuals: 2298
  bin: 1.75e1
  variant carriers: 1615
genotype depth: GenotypeDepth
  all individuals: 2997
  bin: 1.25e1
  variant carriers: 1664
genotype depth: GenotypeDepth
  all individuals: 6981
  bin: 3.25e1
  variant carriers: 2656
genotype depth: GenotypeDepth
  all individuals: 5734
  bin: 4.75e1
  variant carriers: 3581
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 2.5e0
  variant carriers: 98
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 9.75e1
  variant carriers: 617
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 7.25e1
  variant carriers: 1086
genotype depth: GenotypeDepth
  all individuals: 1746
  bin: 6.75e1
  variant carriers: 1472
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 7.75e1
  variant carriers: 689
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 8.75e1
  variant carriers: 283
genotype depth: GenotypeDepth
  all individuals: 2008
  bin: 7.5e0
  variant carriers: 858
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 2.75e1
  variant carriers: 111
genotype quality: GenotypeQuality
  all individuals: 1128
  bin: 2.25e1
  variant carriers: 171
genotype quality: GenotypeQuality
  all individuals: 1995
  bin: 7.75e1
  variant carriers: 272
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 7.5e0
  variant carriers: 71
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 4.25e1
  variant carriers: 105
num of homozygotes: 7250
population: East Asian
population: Other
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

19-49971601-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49971601
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49971601
    reference: chr 19
allele count: 1
allele frequency: 8.641399215360951e-6
allele num: 115722
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000594549
  gene symbol: ALDH16A1
  hgvsc: ENST00000594549.1:n.52C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000599652
  gene symbol: ALDH16A1
  hgvsc: ENST00000599652.1:n.2085-37C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000293350
  ensembl transcript: ENST00000293350
  gene symbol: ALDH16A1
  hgvsc: ENST00000293350.4:c.1939-37C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000470160
  ensembl transcript: ENST00000593417
  gene symbol: ALDH16A1
  hgvsc: ENST00000593417.1:c.*1397-37C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000398675
  ensembl transcript: ENST00000433981
  gene symbol: ALDH16A1
  hgvsc: ENST00000433981.2:c.1444-37C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269469
  ensembl protein: ENSP00000470318
  ensembl transcript: ENST00000599536
  gene symbol: CTD-3148I10.9
  hgvsc: ENST00000599536.1:c.*120+3582C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000445088
  ensembl transcript: ENST00000540132
  gene symbol: ALDH16A1
  hgvsc: ENST00000540132.1:c.1450-37C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000469507
  ensembl transcript: ENST00000600265
  gene symbol: ALDH16A1
  hgvsc: ENST00000600265.1:c.*60-37C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000410142
  ensembl transcript: ENST00000455361
  gene symbol: ALDH16A1
  hgvsc: ENST00000455361.2:c.1786-37C>T
  variant of: http://identifiers.org/hgnc/28114
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1870
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1796
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2654
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8377
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6310
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8362
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2923
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5746
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7205
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4646
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2058
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4141
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1369
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 480
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4529
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 996
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ClippingRankSum

19-49971602-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49971602
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49971602
    reference: chr 19
allele count: 1
allele frequency: 8.631404502140589e-6
allele num: 115856
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000445088
  ensembl transcript: ENST00000540132
  gene symbol: ALDH16A1
  hgvsc: ENST00000540132.1:c.1450-36T>C
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000398675
  ensembl transcript: ENST00000433981
  gene symbol: ALDH16A1
  hgvsc: ENST00000433981.2:c.1444-36T>C
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000599652
  gene symbol: ALDH16A1
  hgvsc: ENST00000599652.1:n.2085-36T>C
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000470160
  ensembl transcript: ENST00000593417
  gene symbol: ALDH16A1
  hgvsc: ENST00000593417.1:c.*1397-36T>C
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000293350
  ensembl transcript: ENST00000293350
  gene symbol: ALDH16A1
  hgvsc: ENST00000293350.4:c.1939-36T>C
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269469
  ensembl protein: ENSP00000470318
  ensembl transcript: ENST00000599536
  gene symbol: CTD-3148I10.9
  hgvsc: ENST00000599536.1:c.*120+3583T>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000594549
  gene symbol: ALDH16A1
  hgvsc: ENST00000594549.1:n.53T>C
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000469507
  ensembl transcript: ENST00000600265
  gene symbol: ALDH16A1
  hgvsc: ENST00000600265.1:c.*60-36T>C
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000410142
  ensembl transcript: ENST00000455361
  gene symbol: ALDH16A1
  hgvsc: ENST00000455361.2:c.1786-36T>C
  variant of: http://identifiers.org/hgnc/28114
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4847
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1854
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2058
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2923
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8389
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5750
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8373
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6343
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2598
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7200
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4142
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1615
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1369
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4559
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 614
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3719
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
reference allele: T
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff

19-49971603-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49971603
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49971603
    reference: chr 19
allele count: 136
allele frequency: 1.173486116623811e-3
allele num: 115894
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000410142
  ensembl transcript: ENST00000455361
  gene symbol: ALDH16A1
  hgvsc: ENST00000455361.2:c.1786-35C>G
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000445088
  ensembl transcript: ENST00000540132
  gene symbol: ALDH16A1
  hgvsc: ENST00000540132.1:c.1450-35C>G
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000293350
  ensembl transcript: ENST00000293350
  gene symbol: ALDH16A1
  hgvsc: ENST00000293350.4:c.1939-35C>G
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000398675
  ensembl transcript: ENST00000433981
  gene symbol: ALDH16A1
  hgvsc: ENST00000433981.2:c.1444-35C>G
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269469
  ensembl protein: ENSP00000470318
  ensembl transcript: ENST00000599536
  gene symbol: CTD-3148I10.9
  hgvsc: ENST00000599536.1:c.*120+3584C>G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000469507
  ensembl transcript: ENST00000600265
  gene symbol: ALDH16A1
  hgvsc: ENST00000600265.1:c.*60-35C>G
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000594549
  gene symbol: ALDH16A1
  hgvsc: ENST00000594549.1:n.54C>G
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000599652
  gene symbol: ALDH16A1
  hgvsc: ENST00000599652.1:n.2085-35C>G
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000470160
  ensembl transcript: ENST00000593417
  gene symbol: ALDH16A1
  hgvsc: ENST00000593417.1:c.*1397-35C>G
  variant of: http://identifiers.org/hgnc/28114
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 4148
  bin: 5.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8373
  bin: 3.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2561
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1468
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2059
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 8397
  bin: 3.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 1369
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4995
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2933
  bin: 5.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 7191
  bin: 4.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 5754
  bin: 4.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 1842
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6382
  bin: 2.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 554
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3707
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 712
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3452
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 1
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP

19-49971604-CCCTG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49971604
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49971600
    reference: chr 19
allele count: 136
allele frequency: 1.1732431546438e-3
allele num: 115918
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000470160
  ensembl transcript: ENST00000593417
  gene symbol: ALDH16A1
  hgvsc: ENST00000593417.1:c.*1397-31_*1397-28delTGCC
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000594549
  gene symbol: ALDH16A1
  hgvsc: ENST00000594549.1:n.58_61delTGCC
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000410142
  ensembl transcript: ENST00000455361
  gene symbol: ALDH16A1
  hgvsc: ENST00000455361.2:c.1786-31_1786-28delTGCC
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000398675
  ensembl transcript: ENST00000433981
  gene symbol: ALDH16A1
  hgvsc: ENST00000433981.2:c.1444-31_1444-28delTGCC
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000445088
  ensembl transcript: ENST00000540132
  gene symbol: ALDH16A1
  hgvsc: ENST00000540132.1:c.1450-31_1450-28delTGCC
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000599652
  gene symbol: ALDH16A1
  hgvsc: ENST00000599652.1:n.2085-31_2085-28delTGCC
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269469
  ensembl protein: ENSP00000470318
  ensembl transcript: ENST00000599536
  gene symbol: CTD-3148I10.9
  hgvsc: ENST00000599536.1:c.*120+3588_*120+3591delTGCC
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000469507
  ensembl transcript: ENST00000600265
  gene symbol: ALDH16A1
  hgvsc: ENST00000600265.1:c.*60-31_*60-28delTGCC
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000293350
  ensembl transcript: ENST00000293350
  gene symbol: ALDH16A1
  hgvsc: ENST00000293350.4:c.1939-31_1939-28delTGCC
  variant of: http://identifiers.org/hgnc/28114
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 8389
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2509
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1822
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2073
  bin: 6.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 4147
  bin: 5.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 7194
  bin: 4.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 2934
  bin: 5.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 6416
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5748
  bin: 4.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 1380
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8374
  bin: 3.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5121
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9557
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 483
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 1
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Finnish)
reference allele: CCCTG
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

19-49971616-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49971616
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49971616
    reference: chr 19
allele count: 4
allele frequency: 3.428238399698315e-5
allele num: 116678
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000293350
  ensembl transcript: ENST00000293350
  gene symbol: ALDH16A1
  hgvsc: ENST00000293350.4:c.1939-22C>G
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000470160
  ensembl transcript: ENST00000593417
  gene symbol: ALDH16A1
  hgvsc: ENST00000593417.1:c.*1397-22C>G
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000594549
  gene symbol: ALDH16A1
  hgvsc: ENST00000594549.1:n.67C>G
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000469507
  ensembl transcript: ENST00000600265
  gene symbol: ALDH16A1
  hgvsc: ENST00000600265.1:c.*60-22C>G
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269469
  ensembl protein: ENSP00000470318
  ensembl transcript: ENST00000599536
  gene symbol: CTD-3148I10.9
  hgvsc: ENST00000599536.1:c.*120+3597C>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000398675
  ensembl transcript: ENST00000433981
  gene symbol: ALDH16A1
  hgvsc: ENST00000433981.2:c.1444-22C>G
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000445088
  ensembl transcript: ENST00000540132
  gene symbol: ALDH16A1
  hgvsc: ENST00000540132.1:c.1450-22C>G
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000410142
  ensembl transcript: ENST00000455361
  gene symbol: ALDH16A1
  hgvsc: ENST00000455361.2:c.1786-22C>G
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000599652
  gene symbol: ALDH16A1
  hgvsc: ENST00000599652.1:n.2085-22C>G
  variant of: http://identifiers.org/hgnc/28114
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8406
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6361
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8559
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4148
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6883
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1608
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7205
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5748
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1647
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2064
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2927
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11242
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3797
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24283
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2102
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

19-49971617-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49971617
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49971617
    reference: chr 19
allele count: 3
allele frequency: 2.567306211169493e-5
allele num: 116854
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000293350
  ensembl transcript: ENST00000293350
  gene symbol: ALDH16A1
  hgvsc: ENST00000293350.4:c.1939-21G>A
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000599652
  gene symbol: ALDH16A1
  hgvsc: ENST00000599652.1:n.2085-21G>A
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000410142
  ensembl transcript: ENST00000455361
  gene symbol: ALDH16A1
  hgvsc: ENST00000455361.2:c.1786-21G>A
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269469
  ensembl protein: ENSP00000470318
  ensembl transcript: ENST00000599536
  gene symbol: CTD-3148I10.9
  hgvsc: ENST00000599536.1:c.*120+3598G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000445088
  ensembl transcript: ENST00000540132
  gene symbol: ALDH16A1
  hgvsc: ENST00000540132.1:c.1450-21G>A
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000470160
  ensembl transcript: ENST00000593417
  gene symbol: ALDH16A1
  hgvsc: ENST00000593417.1:c.*1397-21G>A
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000469507
  ensembl transcript: ENST00000600265
  gene symbol: ALDH16A1
  hgvsc: ENST00000600265.1:c.*60-21G>A
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000594549
  gene symbol: ALDH16A1
  hgvsc: ENST00000594549.1:n.68G>A
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000398675
  ensembl transcript: ENST00000433981
  gene symbol: ALDH16A1
  hgvsc: ENST00000433981.2:c.1444-21G>A
  variant of: http://identifiers.org/hgnc/28114
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4148
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7203
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6929
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8404
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5750
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6530
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2065
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2925
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8565
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1667
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 501
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2103
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQ

19-49971630-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49971630
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49971630
    reference: chr 19
allele count: 239
allele frequency: 2.023092029525293e-3
allele num: 118136
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000445088
  ensembl transcript: ENST00000540132
  gene symbol: ALDH16A1
  hgvsc: ENST00000540132.1:c.1450-8C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000469507
  ensembl transcript: ENST00000600265
  gene symbol: ALDH16A1
  hgvsc: ENST00000600265.1:c.*60-8C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269469
  ensembl protein: ENSP00000470318
  ensembl transcript: ENST00000599536
  gene symbol: CTD-3148I10.9
  hgvsc: ENST00000599536.1:c.*120+3611C>T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000470160
  ensembl transcript: ENST00000593417
  gene symbol: ALDH16A1
  hgvsc: ENST00000593417.1:c.*1397-8C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000398675
  ensembl transcript: ENST00000433981
  gene symbol: ALDH16A1
  hgvsc: ENST00000433981.2:c.1444-8C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000410142
  ensembl transcript: ENST00000455361
  gene symbol: ALDH16A1
  hgvsc: ENST00000455361.2:c.1786-8C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000293350
  ensembl transcript: ENST00000293350
  gene symbol: ALDH16A1
  hgvsc: ENST00000293350.4:c.1939-8C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000594549
  gene symbol: ALDH16A1
  hgvsc: ENST00000594549.1:n.81C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000599652
  gene symbol: ALDH16A1
  hgvsc: ENST00000599652.1:n.2085-8C>T
  variant of: http://identifiers.org/hgnc/28114
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 6.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 7.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 5734
  bin: 4.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8659
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 8.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 7.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 7184
  bin: 4.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7490
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4140
  bin: 5.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 2059
  bin: 6.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 8.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 9.75e1
  variant carriers: 71
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2911
  bin: 5.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 7700
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 8405
  bin: 3.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 4916
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 2.75e1
  variant carriers: 0
hgvs: c.1939-8C>T
num of homozygotes: 2
population: African
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/19-49971631-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49971631
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49971631
    reference: chr 19
allele count: 1
allele frequency: 8.459950593888532e-6
allele num: 118204
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000398675
  ensembl transcript: ENST00000433981
  gene symbol: ALDH16A1
  hgvsc: ENST00000433981.2:c.1444-7C>A
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000293350
  ensembl transcript: ENST00000293350
  gene symbol: ALDH16A1
  hgvsc: ENST00000293350.4:c.1939-7C>A
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000410142
  ensembl transcript: ENST00000455361
  gene symbol: ALDH16A1
  hgvsc: ENST00000455361.2:c.1786-7C>A
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000594549
  gene symbol: ALDH16A1
  hgvsc: ENST00000594549.1:n.82C>A
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000445088
  ensembl transcript: ENST00000540132
  gene symbol: ALDH16A1
  hgvsc: ENST00000540132.1:c.1450-7C>A
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000470160
  ensembl transcript: ENST00000593417
  gene symbol: ALDH16A1
  hgvsc: ENST00000593417.1:c.*1397-7C>A
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000469507
  ensembl transcript: ENST00000600265
  gene symbol: ALDH16A1
  hgvsc: ENST00000600265.1:c.*60-7C>A
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000599652
  gene symbol: ALDH16A1
  hgvsc: ENST00000599652.1:n.2085-7C>A
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269469
  ensembl protein: ENSP00000470318
  ensembl transcript: ENST00000599536
  gene symbol: CTD-3148I10.9
  hgvsc: ENST00000599536.1:c.*120+3612C>A
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2057
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7544
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2937
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8702
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7207
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8441
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7719
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4155
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5757
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
hgvs: c.1939-7C>A
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: African
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQ

19-49971632-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49971632
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49971632
    reference: chr 19
allele count: 1
allele frequency: 8.453514125822104e-6
allele num: 118294
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269469
  ensembl protein: ENSP00000470318
  ensembl transcript: ENST00000599536
  gene symbol: CTD-3148I10.9
  hgvsc: ENST00000599536.1:c.*120+3613C>T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000470160
  ensembl transcript: ENST00000593417
  gene symbol: ALDH16A1
  hgvsc: ENST00000593417.1:c.*1397-6C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000469507
  ensembl transcript: ENST00000600265
  gene symbol: ALDH16A1
  hgvsc: ENST00000600265.1:c.*60-6C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000398675
  ensembl transcript: ENST00000433981
  gene symbol: ALDH16A1
  hgvsc: ENST00000433981.2:c.1444-6C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000594549
  gene symbol: ALDH16A1
  hgvsc: ENST00000594549.1:n.83C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000445088
  ensembl transcript: ENST00000540132
  gene symbol: ALDH16A1
  hgvsc: ENST00000540132.1:c.1450-6C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000410142
  ensembl transcript: ENST00000455361
  gene symbol: ALDH16A1
  hgvsc: ENST00000455361.2:c.1786-6C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000599652
  gene symbol: ALDH16A1
  hgvsc: ENST00000599652.1:n.2085-6C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000293350
  ensembl transcript: ENST00000293350
  gene symbol: ALDH16A1
  hgvsc: ENST00000293350.4:c.1939-6C>T
  variant of: http://identifiers.org/hgnc/28114
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7747
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7578
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4153
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7208
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2936
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2059
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8712
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5757
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8437
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13320
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
hgvs: c.1939-6C>T
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum

19-49971642-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49971642
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49971642
    reference: chr 19
allele count: 1
allele frequency: 8.408448809363649e-6
allele num: 118928
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000599652
  gene symbol: ALDH16A1
  hgvsc: ENST00000599652.1:n.2089C>G
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000470160
  ensembl transcript: ENST00000593417
  gene symbol: ALDH16A1
  hgvsc: ENST00000593417.1:c.*1401C>G
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000293350
  ensembl transcript: ENST00000293350
  gene symbol: ALDH16A1
  hgvsc: ENST00000293350.4:c.1943C>G
  hgvsp: ENSP00000293350.3:p.Ala648Gly
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000398675
  ensembl transcript: ENST00000433981
  gene symbol: ALDH16A1
  hgvsc: ENST00000433981.2:c.1448C>G
  hgvsp: ENSP00000398675.2:p.Ala483Gly
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269469
  ensembl protein: ENSP00000470318
  ensembl transcript: ENST00000599536
  gene symbol: CTD-3148I10.9
  hgvsc: ENST00000599536.1:c.*120+3623C>G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000445088
  ensembl transcript: ENST00000540132
  gene symbol: ALDH16A1
  hgvsc: ENST00000540132.1:c.1454C>G
  hgvsp: ENSP00000445088.1:p.Ala485Gly
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000410142
  ensembl transcript: ENST00000455361
  gene symbol: ALDH16A1
  hgvsc: ENST00000455361.2:c.1790C>G
  hgvsp: ENSP00000410142.1:p.Ala597Gly
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000594549
  gene symbol: ALDH16A1
  hgvsc: ENST00000594549.1:n.93C>G
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000469507
  ensembl transcript: ENST00000600265
  gene symbol: ALDH16A1
  hgvsc: ENST00000600265.1:c.*64C>G
  variant of: http://identifiers.org/hgnc/28114
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7981
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4153
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8448
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7871
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7220
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8805
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2057
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5759
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2936
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 781
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ala648Gly
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum

19-49971643-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49971643
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49971643
    reference: chr 19
allele count: 2
allele frequency: 1.680248676804167e-5
allele num: 119030
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000410142
  ensembl transcript: ENST00000455361
  gene symbol: ALDH16A1
  hgvsc: ENST00000455361.2:c.1791C>G
  hgvsp: ENST00000455361.2:c.1791C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000469507
  ensembl transcript: ENST00000600265
  gene symbol: ALDH16A1
  hgvsc: ENST00000600265.1:c.*65C>G
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269469
  ensembl protein: ENSP00000470318
  ensembl transcript: ENST00000599536
  gene symbol: CTD-3148I10.9
  hgvsc: ENST00000599536.1:c.*120+3624C>G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000293350
  ensembl transcript: ENST00000293350
  gene symbol: ALDH16A1
  hgvsc: ENST00000293350.4:c.1944C>G
  hgvsp: ENST00000293350.4:c.1944C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000470160
  ensembl transcript: ENST00000593417
  gene symbol: ALDH16A1
  hgvsc: ENST00000593417.1:c.*1402C>G
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000594549
  gene symbol: ALDH16A1
  hgvsc: ENST00000594549.1:n.94C>G
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000398675
  ensembl transcript: ENST00000433981
  gene symbol: ALDH16A1
  hgvsc: ENST00000433981.2:c.1449C>G
  hgvsp: ENST00000433981.2:c.1449C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000599652
  gene symbol: ALDH16A1
  hgvsc: ENST00000599652.1:n.2090C>G
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000445088
  ensembl transcript: ENST00000540132
  gene symbol: ALDH16A1
  hgvsc: ENST00000540132.1:c.1455C>G
  hgvsp: ENST00000540132.1:c.1455C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28114
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5758
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8446
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2057
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8001
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4153
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7217
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2936
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8828
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7919
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2400
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5074
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ala648Ala
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: European (Finnish)
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

19-49971643-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49971643
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49971643
    reference: chr 19
allele count: 2
allele frequency: 1.680248676804167e-5
allele num: 119030
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000445088
  ensembl transcript: ENST00000540132
  gene symbol: ALDH16A1
  hgvsc: ENST00000540132.1:c.1455C>T
  hgvsp: ENST00000540132.1:c.1455C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000599652
  gene symbol: ALDH16A1
  hgvsc: ENST00000599652.1:n.2090C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000293350
  ensembl transcript: ENST00000293350
  gene symbol: ALDH16A1
  hgvsc: ENST00000293350.4:c.1944C>T
  hgvsp: ENST00000293350.4:c.1944C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000398675
  ensembl transcript: ENST00000433981
  gene symbol: ALDH16A1
  hgvsc: ENST00000433981.2:c.1449C>T
  hgvsp: ENST00000433981.2:c.1449C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269469
  ensembl protein: ENSP00000470318
  ensembl transcript: ENST00000599536
  gene symbol: CTD-3148I10.9
  hgvsc: ENST00000599536.1:c.*120+3624C>T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000469507
  ensembl transcript: ENST00000600265
  gene symbol: ALDH16A1
  hgvsc: ENST00000600265.1:c.*65C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000470160
  ensembl transcript: ENST00000593417
  gene symbol: ALDH16A1
  hgvsc: ENST00000593417.1:c.*1402C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000410142
  ensembl transcript: ENST00000455361
  gene symbol: ALDH16A1
  hgvsc: ENST00000455361.2:c.1791C>T
  hgvsp: ENST00000455361.2:c.1791C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000594549
  gene symbol: ALDH16A1
  hgvsc: ENST00000594549.1:n.94C>T
  variant of: http://identifiers.org/hgnc/28114
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8001
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8828
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2057
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8446
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7919
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7217
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4153
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5758
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2936
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13954
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ala648Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ

19-49971644-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49971644
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49971644
    reference: chr 19
allele count: 3
allele frequency: 2.518130539887188e-5
allele num: 119136
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000398675
  ensembl transcript: ENST00000433981
  gene symbol: ALDH16A1
  hgvsc: ENST00000433981.2:c.1450G>A
  hgvsp: ENSP00000398675.2:p.Gly484Arg
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000410142
  ensembl transcript: ENST00000455361
  gene symbol: ALDH16A1
  hgvsc: ENST00000455361.2:c.1792G>A
  hgvsp: ENSP00000410142.1:p.Gly598Arg
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000445088
  ensembl transcript: ENST00000540132
  gene symbol: ALDH16A1
  hgvsc: ENST00000540132.1:c.1456G>A
  hgvsp: ENSP00000445088.1:p.Gly486Arg
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000293350
  ensembl transcript: ENST00000293350
  gene symbol: ALDH16A1
  hgvsc: ENST00000293350.4:c.1945G>A
  hgvsp: ENSP00000293350.3:p.Gly649Arg
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000469507
  ensembl transcript: ENST00000600265
  gene symbol: ALDH16A1
  hgvsc: ENST00000600265.1:c.*66G>A
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000594549
  gene symbol: ALDH16A1
  hgvsc: ENST00000594549.1:n.95G>A
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000599652
  gene symbol: ALDH16A1
  hgvsc: ENST00000599652.1:n.2091G>A
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269469
  ensembl protein: ENSP00000470318
  ensembl transcript: ENST00000599536
  gene symbol: CTD-3148I10.9
  hgvsc: ENST00000599536.1:c.*120+3625G>A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000470160
  ensembl transcript: ENST00000593417
  gene symbol: ALDH16A1
  hgvsc: ENST00000593417.1:c.*1403G>A
  variant of: http://identifiers.org/hgnc/28114
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5757
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7221
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8057
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7953
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8450
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2935
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8824
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4156
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2056
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3805
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gly649Arg
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: African
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD

19-49971657-C-CTGTGCTGCGCCTGCGGGAGCCGCTGGG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49971657
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49971684
    reference: chr 19
allele count: 14
allele frequency: 1.170509840643446e-4
allele num: 119606
alternate allele: CTGTGCTGCGCCTGCGGGAGCCGCTGGG
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000599652
  gene symbol: ALDH16A1
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000470160
  ensembl transcript: ENST00000593417
  gene symbol: ALDH16A1
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000469507
  ensembl transcript: ENST00000600265
  gene symbol: ALDH16A1
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269469
  ensembl protein: ENSP00000470318
  ensembl transcript: ENST00000599536
  gene symbol: CTD-3148I10.9
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000410142
  ensembl transcript: ENST00000455361
  gene symbol: ALDH16A1
  hgvsp: ENSP00000410142.1:p.Arg605_Leu613dup
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000293350
  ensembl transcript: ENST00000293350
  gene symbol: ALDH16A1
  hgvsp: ENSP00000293350.3:p.Arg656_Leu664dup
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000445088
  ensembl transcript: ENST00000540132
  gene symbol: ALDH16A1
  hgvsp: ENSP00000445088.1:p.Arg493_Leu501dup
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000398675
  ensembl transcript: ENST00000433981
  gene symbol: ALDH16A1
  hgvsp: ENSP00000398675.2:p.Arg491_Leu499dup
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000594549
  gene symbol: ALDH16A1
  variant of: http://identifiers.org/hgnc/28114
canonical: true
consequence: inframe insertion
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 7217
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8445
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8156
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8132
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4154
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5760
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2056
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8873
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2936
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14388
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 532
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3773
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg656_Leu664dup
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP

19-49971657-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49971657
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49971656
    reference: chr 19
allele count: 1
allele frequency: 8.360784576024614e-6
allele num: 119606
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000469507
  ensembl transcript: ENST00000600265
  gene symbol: ALDH16A1
  hgvsc: ENST00000600265.1:c.*80delT
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000398675
  ensembl transcript: ENST00000433981
  gene symbol: ALDH16A1
  hgvsc: ENST00000433981.2:c.1464delT
  hgvsp: ENSP00000398675.2:p.Val489CysfsTer69
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000410142
  ensembl transcript: ENST00000455361
  gene symbol: ALDH16A1
  hgvsc: ENST00000455361.2:c.1806delT
  hgvsp: ENSP00000410142.1:p.Val603CysfsTer69
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269469
  ensembl protein: ENSP00000470318
  ensembl transcript: ENST00000599536
  gene symbol: CTD-3148I10.9
  hgvsc: ENST00000599536.1:c.*120+3639delT
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000445088
  ensembl transcript: ENST00000540132
  gene symbol: ALDH16A1
  hgvsc: ENST00000540132.1:c.1470delT
  hgvsp: ENSP00000445088.1:p.Val491CysfsTer69
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000470160
  ensembl transcript: ENST00000593417
  gene symbol: ALDH16A1
  hgvsc: ENST00000593417.1:c.*1417delT
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000594549
  gene symbol: ALDH16A1
  hgvsc: ENST00000594549.1:n.109delT
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000293350
  ensembl transcript: ENST00000293350
  gene symbol: ALDH16A1
  hgvsc: ENST00000293350.4:c.1959delT
  hgvsp: ENSP00000293350.3:p.Val654CysfsTer69
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000599652
  gene symbol: ALDH16A1
  hgvsc: ENST00000599652.1:n.2105delT
  variant of: http://identifiers.org/hgnc/28114
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 8873
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8156
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7217
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4154
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2936
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2056
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8132
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5760
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8445
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2408
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Val654CysfsTer69
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: CT
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP

19-49971658-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49971658
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49971658
    reference: chr 19
allele count: 1
allele frequency: 8.358268835358821e-6
allele num: 119642
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000445088
  ensembl transcript: ENST00000540132
  gene symbol: ALDH16A1
  hgvsc: ENST00000540132.1:c.1470T>A
  hgvsp: ENST00000540132.1:c.1470T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269469
  ensembl protein: ENSP00000470318
  ensembl transcript: ENST00000599536
  gene symbol: CTD-3148I10.9
  hgvsc: ENST00000599536.1:c.*120+3639T>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000599652
  gene symbol: ALDH16A1
  hgvsc: ENST00000599652.1:n.2105T>A
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000293350
  ensembl transcript: ENST00000293350
  gene symbol: ALDH16A1
  hgvsc: ENST00000293350.4:c.1959T>A
  hgvsp: ENST00000293350.4:c.1959T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000470160
  ensembl transcript: ENST00000593417
  gene symbol: ALDH16A1
  hgvsc: ENST00000593417.1:c.*1417T>A
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000398675
  ensembl transcript: ENST00000433981
  gene symbol: ALDH16A1
  hgvsc: ENST00000433981.2:c.1464T>A
  hgvsp: ENST00000433981.2:c.1464T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000410142
  ensembl transcript: ENST00000455361
  gene symbol: ALDH16A1
  hgvsc: ENST00000455361.2:c.1806T>A
  hgvsp: ENST00000455361.2:c.1806T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000594549
  gene symbol: ALDH16A1
  hgvsc: ENST00000594549.1:n.109T>A
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000469507
  ensembl transcript: ENST00000600265
  gene symbol: ALDH16A1
  hgvsc: ENST00000600265.1:c.*80T>A
  variant of: http://identifiers.org/hgnc/28114
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7216
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5758
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8173
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2935
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2055
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4154
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8155
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8442
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8868
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24235
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3776
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Pro653Pro
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP

http://identifiers.org/exac.variant/19-49971665-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49971665
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49971665
    reference: chr 19
allele count: 1
allele frequency: 8.353241893178742e-6
allele num: 119714
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000410142
  ensembl transcript: ENST00000455361
  gene symbol: ALDH16A1
  hgvsc: ENST00000455361.2:c.1813C>A
  hgvsp: ENSP00000410142.1:p.Arg605Ser
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000470160
  ensembl transcript: ENST00000593417
  gene symbol: ALDH16A1
  hgvsc: ENST00000593417.1:c.*1424C>A
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000398675
  ensembl transcript: ENST00000433981
  gene symbol: ALDH16A1
  hgvsc: ENST00000433981.2:c.1471C>A
  hgvsp: ENSP00000398675.2:p.Arg491Ser
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269469
  ensembl protein: ENSP00000470318
  ensembl transcript: ENST00000599536
  gene symbol: CTD-3148I10.9
  hgvsc: ENST00000599536.1:c.*120+3646C>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000599652
  gene symbol: ALDH16A1
  hgvsc: ENST00000599652.1:n.2112C>A
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000445088
  ensembl transcript: ENST00000540132
  gene symbol: ALDH16A1
  hgvsc: ENST00000540132.1:c.1477C>A
  hgvsp: ENSP00000445088.1:p.Arg493Ser
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000594549
  gene symbol: ALDH16A1
  hgvsc: ENST00000594549.1:n.116C>A
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000293350
  ensembl transcript: ENST00000293350
  gene symbol: ALDH16A1
  hgvsc: ENST00000293350.4:c.1966C>A
  hgvsp: ENSP00000293350.3:p.Arg656Ser
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000469507
  ensembl transcript: ENST00000600265
  gene symbol: ALDH16A1
  hgvsc: ENST00000600265.1:c.*87C>A
  variant of: http://identifiers.org/hgnc/28114
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2055
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2935
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5758
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8152
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8440
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8881
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8206
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4159
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7219
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2416
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg656Ser
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

19-49971666-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49971666
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49971666
    reference: chr 19
allele count: 1
allele frequency: 8.352544184958738e-6
allele num: 119724
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000594549
  gene symbol: ALDH16A1
  hgvsc: ENST00000594549.1:n.117G>A
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000445088
  ensembl transcript: ENST00000540132
  gene symbol: ALDH16A1
  hgvsc: ENST00000540132.1:c.1478G>A
  hgvsp: ENSP00000445088.1:p.Arg493His
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000398675
  ensembl transcript: ENST00000433981
  gene symbol: ALDH16A1
  hgvsc: ENST00000433981.2:c.1472G>A
  hgvsp: ENSP00000398675.2:p.Arg491His
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000470160
  ensembl transcript: ENST00000593417
  gene symbol: ALDH16A1
  hgvsc: ENST00000593417.1:c.*1425G>A
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000469507
  ensembl transcript: ENST00000600265
  gene symbol: ALDH16A1
  hgvsc: ENST00000600265.1:c.*88G>A
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000410142
  ensembl transcript: ENST00000455361
  gene symbol: ALDH16A1
  hgvsc: ENST00000455361.2:c.1814G>A
  hgvsp: ENSP00000410142.1:p.Arg605His
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000293350
  ensembl transcript: ENST00000293350
  gene symbol: ALDH16A1
  hgvsc: ENST00000293350.4:c.1967G>A
  hgvsp: ENSP00000293350.3:p.Arg656His
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269469
  ensembl protein: ENSP00000470318
  ensembl transcript: ENST00000599536
  gene symbol: CTD-3148I10.9
  hgvsc: ENST00000599536.1:c.*120+3647G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000599652
  gene symbol: ALDH16A1
  hgvsc: ENST00000599652.1:n.2113G>A
  variant of: http://identifiers.org/hgnc/28114
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2935
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8150
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8226
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8440
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8878
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4156
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7221
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2056
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5759
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3808
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24236
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Arg656His
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum

19-49971670-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49971670
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49971670
    reference: chr 19
allele count: 1
allele frequency: 8.346966712296751e-6
allele num: 119804
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000470160
  ensembl transcript: ENST00000593417
  gene symbol: ALDH16A1
  hgvsc: ENST00000593417.1:c.*1429G>A
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000599652
  gene symbol: ALDH16A1
  hgvsc: ENST00000599652.1:n.2117G>A
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000445088
  ensembl transcript: ENST00000540132
  gene symbol: ALDH16A1
  hgvsc: ENST00000540132.1:c.1482G>A
  hgvsp: ENST00000540132.1:c.1482G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000293350
  ensembl transcript: ENST00000293350
  gene symbol: ALDH16A1
  hgvsc: ENST00000293350.4:c.1971G>A
  hgvsp: ENST00000293350.4:c.1971G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000469507
  ensembl transcript: ENST00000600265
  gene symbol: ALDH16A1
  hgvsc: ENST00000600265.1:c.*92G>A
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000398675
  ensembl transcript: ENST00000433981
  gene symbol: ALDH16A1
  hgvsc: ENST00000433981.2:c.1476G>A
  hgvsp: ENST00000433981.2:c.1476G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269469
  ensembl protein: ENSP00000470318
  ensembl transcript: ENST00000599536
  gene symbol: CTD-3148I10.9
  hgvsc: ENST00000599536.1:c.*120+3651G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000594549
  gene symbol: ALDH16A1
  hgvsc: ENST00000594549.1:n.121G>A
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000410142
  ensembl transcript: ENST00000455361
  gene symbol: ALDH16A1
  hgvsc: ENST00000455361.2:c.1818G>A
  hgvsp: ENST00000455361.2:c.1818G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28114
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4154
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5760
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2056
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8893
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8440
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2935
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7216
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8179
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8247
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3477
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Leu657Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: QD

19-49971671-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49971671
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49971671
    reference: chr 19
allele count: 6
allele frequency: 5.008180027378051e-5
allele num: 119804
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000599652
  gene symbol: ALDH16A1
  hgvsc: ENST00000599652.1:n.2118C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000398675
  ensembl transcript: ENST00000433981
  gene symbol: ALDH16A1
  hgvsc: ENST00000433981.2:c.1477C>T
  hgvsp: ENSP00000398675.2:p.Arg493Trp
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000470160
  ensembl transcript: ENST00000593417
  gene symbol: ALDH16A1
  hgvsc: ENST00000593417.1:c.*1430C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000594549
  gene symbol: ALDH16A1
  hgvsc: ENST00000594549.1:n.122C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000293350
  ensembl transcript: ENST00000293350
  gene symbol: ALDH16A1
  hgvsc: ENST00000293350.4:c.1972C>T
  hgvsp: ENSP00000293350.3:p.Arg658Trp
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000410142
  ensembl transcript: ENST00000455361
  gene symbol: ALDH16A1
  hgvsc: ENST00000455361.2:c.1819C>T
  hgvsp: ENSP00000410142.1:p.Arg607Trp
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000445088
  ensembl transcript: ENST00000540132
  gene symbol: ALDH16A1
  hgvsc: ENST00000540132.1:c.1483C>T
  hgvsp: ENSP00000445088.1:p.Arg495Trp
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269469
  ensembl protein: ENSP00000470318
  ensembl transcript: ENST00000599536
  gene symbol: CTD-3148I10.9
  hgvsc: ENST00000599536.1:c.*120+3652C>T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000469507
  ensembl transcript: ENST00000600265
  gene symbol: ALDH16A1
  hgvsc: ENST00000600265.1:c.*93C>T
  variant of: http://identifiers.org/hgnc/28114
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8901
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2937
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 8167
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8257
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2058
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7221
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8441
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4157
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5760
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5179
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg658Trp
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: C
site quality: MQ
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

19-49971672-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49971672
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49971672
    reference: chr 19
allele count: 1
allele frequency: 8.34278849362611e-6
allele num: 119864
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000445088
  ensembl transcript: ENST00000540132
  gene symbol: ALDH16A1
  hgvsc: ENST00000540132.1:c.1484G>A
  hgvsp: ENSP00000445088.1:p.Arg495Gln
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000599652
  gene symbol: ALDH16A1
  hgvsc: ENST00000599652.1:n.2119G>A
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000469507
  ensembl transcript: ENST00000600265
  gene symbol: ALDH16A1
  hgvsc: ENST00000600265.1:c.*94G>A
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000293350
  ensembl transcript: ENST00000293350
  gene symbol: ALDH16A1
  hgvsc: ENST00000293350.4:c.1973G>A
  hgvsp: ENSP00000293350.3:p.Arg658Gln
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000398675
  ensembl transcript: ENST00000433981
  gene symbol: ALDH16A1
  hgvsc: ENST00000433981.2:c.1478G>A
  hgvsp: ENSP00000398675.2:p.Arg493Gln
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269469
  ensembl protein: ENSP00000470318
  ensembl transcript: ENST00000599536
  gene symbol: CTD-3148I10.9
  hgvsc: ENST00000599536.1:c.*120+3653G>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000410142
  ensembl transcript: ENST00000455361
  gene symbol: ALDH16A1
  hgvsc: ENST00000455361.2:c.1820G>A
  hgvsp: ENSP00000410142.1:p.Arg607Gln
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000594549
  gene symbol: ALDH16A1
  hgvsc: ENST00000594549.1:n.123G>A
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000470160
  ensembl transcript: ENST00000593417
  gene symbol: ALDH16A1
  hgvsc: ENST00000593417.1:c.*1431G>A
  variant of: http://identifiers.org/hgnc/28114
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2057
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8282
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8173
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8443
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7219
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2937
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5758
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4155
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8900
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5181
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2414
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg658Gln
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/19-49971677-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49971677
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49971677
    reference: chr 19
allele count: 1
allele frequency: 8.335278231587371e-6
allele num: 119972
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000470160
  ensembl transcript: ENST00000593417
  gene symbol: ALDH16A1
  hgvsc: ENST00000593417.1:c.*1436C>A
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269469
  ensembl protein: ENSP00000470318
  ensembl transcript: ENST00000599536
  gene symbol: CTD-3148I10.9
  hgvsc: ENST00000599536.1:c.*120+3658C>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000398675
  ensembl transcript: ENST00000433981
  gene symbol: ALDH16A1
  hgvsc: ENST00000433981.2:c.1483C>A
  hgvsp: ENSP00000398675.2:p.Pro495Thr
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000469507
  ensembl transcript: ENST00000600265
  gene symbol: ALDH16A1
  hgvsc: ENST00000600265.1:c.*99C>A
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000599652
  gene symbol: ALDH16A1
  hgvsc: ENST00000599652.1:n.2124C>A
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000594549
  gene symbol: ALDH16A1
  hgvsc: ENST00000594549.1:n.128C>A
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000410142
  ensembl transcript: ENST00000455361
  gene symbol: ALDH16A1
  hgvsc: ENST00000455361.2:c.1825C>A
  hgvsp: ENSP00000410142.1:p.Pro609Thr
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000293350
  ensembl transcript: ENST00000293350
  gene symbol: ALDH16A1
  hgvsc: ENST00000293350.4:c.1978C>A
  hgvsp: ENSP00000293350.3:p.Pro660Thr
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000445088
  ensembl transcript: ENST00000540132
  gene symbol: ALDH16A1
  hgvsc: ENST00000540132.1:c.1489C>A
  hgvsp: ENSP00000445088.1:p.Pro497Thr
  variant of: http://identifiers.org/hgnc/28114
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8904
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2935
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7218
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8221
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5758
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8315
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8443
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2056
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4154
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24231
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Pro660Thr
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: QD

19-49971678-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49971678
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49971678
    reference: chr 19
allele count: 3
allele frequency: 2.500125006250312e-5
allele num: 119994
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000445088
  ensembl transcript: ENST00000540132
  gene symbol: ALDH16A1
  hgvsc: ENST00000540132.1:c.1490C>T
  hgvsp: ENSP00000445088.1:p.Pro497Leu
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000594549
  gene symbol: ALDH16A1
  hgvsc: ENST00000594549.1:n.129C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000410142
  ensembl transcript: ENST00000455361
  gene symbol: ALDH16A1
  hgvsc: ENST00000455361.2:c.1826C>T
  hgvsp: ENSP00000410142.1:p.Pro609Leu
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000293350
  ensembl transcript: ENST00000293350
  gene symbol: ALDH16A1
  hgvsc: ENST00000293350.4:c.1979C>T
  hgvsp: ENSP00000293350.3:p.Pro660Leu
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269469
  ensembl protein: ENSP00000470318
  ensembl transcript: ENST00000599536
  gene symbol: CTD-3148I10.9
  hgvsc: ENST00000599536.1:c.*120+3659C>T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000470160
  ensembl transcript: ENST00000593417
  gene symbol: ALDH16A1
  hgvsc: ENST00000593417.1:c.*1437C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000398675
  ensembl transcript: ENST00000433981
  gene symbol: ALDH16A1
  hgvsc: ENST00000433981.2:c.1484C>T
  hgvsp: ENSP00000398675.2:p.Pro495Leu
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000469507
  ensembl transcript: ENST00000600265
  gene symbol: ALDH16A1
  hgvsc: ENST00000600265.1:c.*100C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000599652
  gene symbol: ALDH16A1
  hgvsc: ENST00000599652.1:n.2125C>T
  variant of: http://identifiers.org/hgnc/28114
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2056
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8326
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8907
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8444
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4153
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7218
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8224
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5758
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2935
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Pro660Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Other
reference allele: C
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

19-49971679-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49971679
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49971679
    reference: chr 19
allele count: 4
allele frequency: 3.333000033330001e-5
allele num: 120012
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000445088
  ensembl transcript: ENST00000540132
  gene symbol: ALDH16A1
  hgvsc: ENST00000540132.1:c.1491G>A
  hgvsp: ENST00000540132.1:c.1491G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000410142
  ensembl transcript: ENST00000455361
  gene symbol: ALDH16A1
  hgvsc: ENST00000455361.2:c.1827G>A
  hgvsp: ENST00000455361.2:c.1827G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000599652
  gene symbol: ALDH16A1
  hgvsc: ENST00000599652.1:n.2126G>A
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000469507
  ensembl transcript: ENST00000600265
  gene symbol: ALDH16A1
  hgvsc: ENST00000600265.1:c.*101G>A
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000293350
  ensembl transcript: ENST00000293350
  gene symbol: ALDH16A1
  hgvsc: ENST00000293350.4:c.1980G>A
  hgvsp: ENST00000293350.4:c.1980G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000398675
  ensembl transcript: ENST00000433981
  gene symbol: ALDH16A1
  hgvsc: ENST00000433981.2:c.1485G>A
  hgvsp: ENST00000433981.2:c.1485G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000594549
  gene symbol: ALDH16A1
  hgvsc: ENST00000594549.1:n.130G>A
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000470160
  ensembl transcript: ENST00000593417
  gene symbol: ALDH16A1
  hgvsc: ENST00000593417.1:c.*1438G>A
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269469
  ensembl protein: ENSP00000470318
  ensembl transcript: ENST00000599536
  gene symbol: CTD-3148I10.9
  hgvsc: ENST00000599536.1:c.*120+3660G>A
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5760
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8223
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8346
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4153
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8447
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7218
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2055
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8903
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2935
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 447
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14686
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Pro660Pro
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

19-49971689-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49971689
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49971689
    reference: chr 19
allele count: 1
allele frequency: 8.315731701232391e-6
allele num: 120254
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000293350
  ensembl transcript: ENST00000293350
  gene symbol: ALDH16A1
  hgvsc: ENST00000293350.4:c.1990C>T
  hgvsp: ENST00000293350.4:c.1990C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000410142
  ensembl transcript: ENST00000455361
  gene symbol: ALDH16A1
  hgvsc: ENST00000455361.2:c.1837C>T
  hgvsp: ENST00000455361.2:c.1837C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000599652
  gene symbol: ALDH16A1
  hgvsc: ENST00000599652.1:n.2136C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000469507
  ensembl transcript: ENST00000600265
  gene symbol: ALDH16A1
  hgvsc: ENST00000600265.1:c.*111C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000398675
  ensembl transcript: ENST00000433981
  gene symbol: ALDH16A1
  hgvsc: ENST00000433981.2:c.1495C>T
  hgvsp: ENST00000433981.2:c.1495C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000445088
  ensembl transcript: ENST00000540132
  gene symbol: ALDH16A1
  hgvsc: ENST00000540132.1:c.1501C>T
  hgvsp: ENST00000540132.1:c.1501C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000470160
  ensembl transcript: ENST00000593417
  gene symbol: ALDH16A1
  hgvsc: ENST00000593417.1:c.*1448C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000594549
  gene symbol: ALDH16A1
  hgvsc: ENST00000594549.1:n.140C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269469
  ensembl protein: ENSP00000470318
  ensembl transcript: ENST00000599536
  gene symbol: CTD-3148I10.9
  hgvsc: ENST00000599536.1:c.*120+3670C>T
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8916
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4152
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8445
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7220
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8390
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2936
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8306
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5759
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2055
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3810
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3783
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Leu664Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: African
population: East Asian
reference allele: C
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD

19-49971696-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49971696
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49971696
    reference: chr 19
allele count: 1
allele frequency: 8.314348903337379e-6
allele num: 120274
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000398675
  ensembl transcript: ENST00000433981
  gene symbol: ALDH16A1
  hgvsc: ENST00000433981.2:c.1502T>G
  hgvsp: ENSP00000398675.2:p.Val501Gly
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000445088
  ensembl transcript: ENST00000540132
  gene symbol: ALDH16A1
  hgvsc: ENST00000540132.1:c.1508T>G
  hgvsp: ENSP00000445088.1:p.Val503Gly
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000410142
  ensembl transcript: ENST00000455361
  gene symbol: ALDH16A1
  hgvsc: ENST00000455361.2:c.1844T>G
  hgvsp: ENSP00000410142.1:p.Val615Gly
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000293350
  ensembl transcript: ENST00000293350
  gene symbol: ALDH16A1
  hgvsc: ENST00000293350.4:c.1997T>G
  hgvsp: ENSP00000293350.3:p.Val666Gly
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000469507
  ensembl transcript: ENST00000600265
  gene symbol: ALDH16A1
  hgvsc: ENST00000600265.1:c.*118T>G
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000594549
  gene symbol: ALDH16A1
  hgvsc: ENST00000594549.1:n.147T>G
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000470160
  ensembl transcript: ENST00000593417
  gene symbol: ALDH16A1
  hgvsc: ENST00000593417.1:c.*1455T>G
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000599652
  gene symbol: ALDH16A1
  hgvsc: ENST00000599652.1:n.2143T>G
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269469
  ensembl protein: ENSP00000470318
  ensembl transcript: ENST00000599536
  gene symbol: CTD-3148I10.9
  hgvsc: ENST00000599536.1:c.*120+3677T>G
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 7212
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8383
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8363
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2059
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8442
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8904
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4151
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5755
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2936
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2417
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5228
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Val666Gly
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

19-49971705-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49971705
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49971705
    reference: chr 19
allele count: 1
allele frequency: 8.298204268596276e-6
allele num: 120508
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000410142
  ensembl transcript: ENST00000455361
  gene symbol: ALDH16A1
  hgvsc: ENST00000455361.2:c.1853C>T
  hgvsp: ENSP00000410142.1:p.Pro618Leu
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000293350
  ensembl transcript: ENST00000293350
  gene symbol: ALDH16A1
  hgvsc: ENST00000293350.4:c.2006C>T
  hgvsp: ENSP00000293350.3:p.Pro669Leu
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000445088
  ensembl transcript: ENST00000540132
  gene symbol: ALDH16A1
  hgvsc: ENST00000540132.1:c.1517C>T
  hgvsp: ENSP00000445088.1:p.Pro506Leu
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000470160
  ensembl transcript: ENST00000593417
  gene symbol: ALDH16A1
  hgvsc: ENST00000593417.1:c.*1464C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000599652
  gene symbol: ALDH16A1
  hgvsc: ENST00000599652.1:n.2152C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000594549
  gene symbol: ALDH16A1
  hgvsc: ENST00000594549.1:n.156C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000469507
  ensembl transcript: ENST00000600265
  gene symbol: ALDH16A1
  hgvsc: ENST00000600265.1:c.*127C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269469
  ensembl protein: ENSP00000470318
  ensembl transcript: ENST00000599536
  gene symbol: CTD-3148I10.9
  hgvsc: ENST00000599536.1:c.*120+3686C>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000398675
  ensembl transcript: ENST00000433981
  gene symbol: ALDH16A1
  hgvsc: ENST00000433981.2:c.1511C>T
  hgvsp: ENSP00000398675.2:p.Pro504Leu
  variant of: http://identifiers.org/hgnc/28114
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2938
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2061
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5758
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8404
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8914
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1369
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8417
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8459
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4158
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7222
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14965
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Pro669Leu
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff

19-49971709-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49971709
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49971709
    reference: chr 19
allele count: 2
allele frequency: 1.658814942605003e-5
allele num: 120568
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000470160
  ensembl transcript: ENST00000593417
  gene symbol: ALDH16A1
  hgvsc: ENST00000593417.1:c.*1468C>G
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000398675
  ensembl transcript: ENST00000433981
  gene symbol: ALDH16A1
  hgvsc: ENST00000433981.2:c.1515C>G
  hgvsp: ENSP00000398675.2:p.Asp505Glu
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000594549
  gene symbol: ALDH16A1
  hgvsc: ENST00000594549.1:n.160C>G
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000599652
  gene symbol: ALDH16A1
  hgvsc: ENST00000599652.1:n.2156C>G
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000410142
  ensembl transcript: ENST00000455361
  gene symbol: ALDH16A1
  hgvsc: ENST00000455361.2:c.1857C>G
  hgvsp: ENSP00000410142.1:p.Asp619Glu
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000445088
  ensembl transcript: ENST00000540132
  gene symbol: ALDH16A1
  hgvsc: ENST00000540132.1:c.1521C>G
  hgvsp: ENSP00000445088.1:p.Asp507Glu
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000469507
  ensembl transcript: ENST00000600265
  gene symbol: ALDH16A1
  hgvsc: ENST00000600265.1:c.*131C>G
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000293350
  ensembl transcript: ENST00000293350
  gene symbol: ALDH16A1
  hgvsc: ENST00000293350.4:c.2010C>G
  hgvsp: ENSP00000293350.3:p.Asp670Glu
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269469
  ensembl protein: ENSP00000470318
  ensembl transcript: ENST00000599536
  gene symbol: CTD-3148I10.9
  hgvsc: ENST00000599536.1:c.*120+3690C>G
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8416
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4158
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2938
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8912
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2061
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7221
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8437
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5758
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8458
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1369
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Asp670Glu
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP

19-49971709-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49971709
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49971709
    reference: chr 19
allele count: 1
allele frequency: 8.294074713025015e-6
allele num: 120568
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000469507
  ensembl transcript: ENST00000600265
  gene symbol: ALDH16A1
  hgvsc: ENST00000600265.1:c.*131C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000398675
  ensembl transcript: ENST00000433981
  gene symbol: ALDH16A1
  hgvsc: ENST00000433981.2:c.1515C>T
  hgvsp: ENST00000433981.2:c.1515C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000470160
  ensembl transcript: ENST00000593417
  gene symbol: ALDH16A1
  hgvsc: ENST00000593417.1:c.*1468C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000293350
  ensembl transcript: ENST00000293350
  gene symbol: ALDH16A1
  hgvsc: ENST00000293350.4:c.2010C>T
  hgvsp: ENST00000293350.4:c.2010C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269469
  ensembl protein: ENSP00000470318
  ensembl transcript: ENST00000599536
  gene symbol: CTD-3148I10.9
  hgvsc: ENST00000599536.1:c.*120+3690C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000594549
  gene symbol: ALDH16A1
  hgvsc: ENST00000594549.1:n.160C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000445088
  ensembl transcript: ENST00000540132
  gene symbol: ALDH16A1
  hgvsc: ENST00000540132.1:c.1521C>T
  hgvsp: ENST00000540132.1:c.1521C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000599652
  gene symbol: ALDH16A1
  hgvsc: ENST00000599652.1:n.2156C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000410142
  ensembl transcript: ENST00000455361
  gene symbol: ALDH16A1
  hgvsc: ENST00000455361.2:c.1857C>T
  hgvsp: ENST00000455361.2:c.1857C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28114
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8416
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5758
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8437
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7221
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4158
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1369
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8912
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2938
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2061
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8458
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Asp670Asp
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: DP

19-49971710-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49971710
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49971710
    reference: chr 19
allele count: 1
allele frequency: 8.292148993333113e-6
allele num: 120596
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000445088
  ensembl transcript: ENST00000540132
  gene symbol: ALDH16A1
  hgvsc: ENST00000540132.1:c.1522G>A
  hgvsp: ENSP00000445088.1:p.Glu508Lys
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000293350
  ensembl transcript: ENST00000293350
  gene symbol: ALDH16A1
  hgvsc: ENST00000293350.4:c.2011G>A
  hgvsp: ENSP00000293350.3:p.Glu671Lys
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000410142
  ensembl transcript: ENST00000455361
  gene symbol: ALDH16A1
  hgvsc: ENST00000455361.2:c.1858G>A
  hgvsp: ENSP00000410142.1:p.Glu620Lys
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269469
  ensembl protein: ENSP00000470318
  ensembl transcript: ENST00000599536
  gene symbol: CTD-3148I10.9
  hgvsc: ENST00000599536.1:c.*120+3691G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000599652
  gene symbol: ALDH16A1
  hgvsc: ENST00000599652.1:n.2157G>A
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000594549
  gene symbol: ALDH16A1
  hgvsc: ENST00000594549.1:n.161G>A
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000469507
  ensembl transcript: ENST00000600265
  gene symbol: ALDH16A1
  hgvsc: ENST00000600265.1:c.*132G>A
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000470160
  ensembl transcript: ENST00000593417
  gene symbol: ALDH16A1
  hgvsc: ENST00000593417.1:c.*1469G>A
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000398675
  ensembl transcript: ENST00000433981
  gene symbol: ALDH16A1
  hgvsc: ENST00000433981.2:c.1516G>A
  hgvsp: ENSP00000398675.2:p.Glu506Lys
  variant of: http://identifiers.org/hgnc/28114
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2938
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8914
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8458
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7223
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4157
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8440
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2061
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5758
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8425
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3815
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24223
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Glu671Lys
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum

19-49971711-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49971711
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49971711
    reference: chr 19
allele count: 7
allele frequency: 5.803734288462176e-5
allele num: 120612
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269469
  ensembl protein: ENSP00000470318
  ensembl transcript: ENST00000599536
  gene symbol: CTD-3148I10.9
  hgvsc: ENST00000599536.1:c.*120+3692A>G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000293350
  ensembl transcript: ENST00000293350
  gene symbol: ALDH16A1
  hgvsc: ENST00000293350.4:c.2012A>G
  hgvsp: ENSP00000293350.3:p.Glu671Gly
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000445088
  ensembl transcript: ENST00000540132
  gene symbol: ALDH16A1
  hgvsc: ENST00000540132.1:c.1523A>G
  hgvsp: ENSP00000445088.1:p.Glu508Gly
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000410142
  ensembl transcript: ENST00000455361
  gene symbol: ALDH16A1
  hgvsc: ENST00000455361.2:c.1859A>G
  hgvsp: ENSP00000410142.1:p.Glu620Gly
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000469507
  ensembl transcript: ENST00000600265
  gene symbol: ALDH16A1
  hgvsc: ENST00000600265.1:c.*133A>G
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000398675
  ensembl transcript: ENST00000433981
  gene symbol: ALDH16A1
  hgvsc: ENST00000433981.2:c.1517A>G
  hgvsp: ENSP00000398675.2:p.Glu506Gly
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000470160
  ensembl transcript: ENST00000593417
  gene symbol: ALDH16A1
  hgvsc: ENST00000593417.1:c.*1470A>G
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000599652
  gene symbol: ALDH16A1
  hgvsc: ENST00000599652.1:n.2158A>G
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000594549
  gene symbol: ALDH16A1
  hgvsc: ENST00000594549.1:n.162A>G
  variant of: http://identifiers.org/hgnc/28114
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4158
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8912
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8436
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8428
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8456
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5757
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2061
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2938
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7224
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3786
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Glu671Gly
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Finnish)
reference allele: A
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ

19-49971719-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49971719
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49971719
    reference: chr 19
allele count: 1
allele frequency: 8.284180528862085e-6
allele num: 120712
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000470160
  ensembl transcript: ENST00000593417
  gene symbol: ALDH16A1
  hgvsc: ENST00000593417.1:c.*1478C>G
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000410142
  ensembl transcript: ENST00000455361
  gene symbol: ALDH16A1
  hgvsc: ENST00000455361.2:c.1867C>G
  hgvsp: ENSP00000410142.1:p.Leu623Val
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000293350
  ensembl transcript: ENST00000293350
  gene symbol: ALDH16A1
  hgvsc: ENST00000293350.4:c.2020C>G
  hgvsp: ENSP00000293350.3:p.Leu674Val
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000469507
  ensembl transcript: ENST00000600265
  gene symbol: ALDH16A1
  hgvsc: ENST00000600265.1:c.*141C>G
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000398675
  ensembl transcript: ENST00000433981
  gene symbol: ALDH16A1
  hgvsc: ENST00000433981.2:c.1525C>G
  hgvsp: ENSP00000398675.2:p.Leu509Val
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000599652
  gene symbol: ALDH16A1
  hgvsc: ENST00000599652.1:n.2166C>G
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000445088
  ensembl transcript: ENST00000540132
  gene symbol: ALDH16A1
  hgvsc: ENST00000540132.1:c.1531C>G
  hgvsp: ENSP00000445088.1:p.Leu511Val
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269469
  ensembl protein: ENSP00000470318
  ensembl transcript: ENST00000599536
  gene symbol: CTD-3148I10.9
  hgvsc: ENST00000599536.1:c.*120+3700C>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000594549
  gene symbol: ALDH16A1
  hgvsc: ENST00000594549.1:n.170C>G
  variant of: http://identifiers.org/hgnc/28114
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8454
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8911
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5759
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7224
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8459
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2061
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4158
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2938
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8480
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Leu674Val
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: South Asian
reference allele: C
site quality: FS
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD

19-49971720-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49971720
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49971720
    reference: chr 19
allele count: 1
allele frequency: 8.283357078956959e-6
allele num: 120724
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000469507
  ensembl transcript: ENST00000600265
  gene symbol: ALDH16A1
  hgvsc: ENST00000600265.1:c.*142T>C
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000445088
  ensembl transcript: ENST00000540132
  gene symbol: ALDH16A1
  hgvsc: ENST00000540132.1:c.1532T>C
  hgvsp: ENSP00000445088.1:p.Leu511Pro
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000293350
  ensembl transcript: ENST00000293350
  gene symbol: ALDH16A1
  hgvsc: ENST00000293350.4:c.2021T>C
  hgvsp: ENSP00000293350.3:p.Leu674Pro
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000470160
  ensembl transcript: ENST00000593417
  gene symbol: ALDH16A1
  hgvsc: ENST00000593417.1:c.*1479T>C
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269469
  ensembl protein: ENSP00000470318
  ensembl transcript: ENST00000599536
  gene symbol: CTD-3148I10.9
  hgvsc: ENST00000599536.1:c.*120+3701T>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000594549
  gene symbol: ALDH16A1
  hgvsc: ENST00000594549.1:n.171T>C
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000410142
  ensembl transcript: ENST00000455361
  gene symbol: ALDH16A1
  hgvsc: ENST00000455361.2:c.1868T>C
  hgvsp: ENSP00000410142.1:p.Leu623Pro
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000398675
  ensembl transcript: ENST00000433981
  gene symbol: ALDH16A1
  hgvsc: ENST00000433981.2:c.1526T>C
  hgvsp: ENSP00000398675.2:p.Leu509Pro
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000599652
  gene symbol: ALDH16A1
  hgvsc: ENST00000599652.1:n.2167T>C
  variant of: http://identifiers.org/hgnc/28114
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5759
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4158
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2061
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7224
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8486
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8459
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8914
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8452
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2938
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Leu674Pro
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: T
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum

19-49971727-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49971727
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49971727
    reference: chr 19
allele count: 2
allele frequency: 1.655492095025246e-5
allele num: 120810
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269469
  ensembl protein: ENSP00000470318
  ensembl transcript: ENST00000599536
  gene symbol: CTD-3148I10.9
  hgvsc: ENST00000599536.1:c.*120+3708C>T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000470160
  ensembl transcript: ENST00000593417
  gene symbol: ALDH16A1
  hgvsc: ENST00000593417.1:c.*1486C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000398675
  ensembl transcript: ENST00000433981
  gene symbol: ALDH16A1
  hgvsc: ENST00000433981.2:c.1533C>T
  hgvsp: ENST00000433981.2:c.1533C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000293350
  ensembl transcript: ENST00000293350
  gene symbol: ALDH16A1
  hgvsc: ENST00000293350.4:c.2028C>T
  hgvsp: ENST00000293350.4:c.2028C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000469507
  ensembl transcript: ENST00000600265
  gene symbol: ALDH16A1
  hgvsc: ENST00000600265.1:c.*149C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000410142
  ensembl transcript: ENST00000455361
  gene symbol: ALDH16A1
  hgvsc: ENST00000455361.2:c.1875C>T
  hgvsp: ENST00000455361.2:c.1875C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000445088
  ensembl transcript: ENST00000540132
  gene symbol: ALDH16A1
  hgvsc: ENST00000540132.1:c.1539C>T
  hgvsp: ENST00000540132.1:c.1539C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000594549
  gene symbol: ALDH16A1
  hgvsc: ENST00000594549.1:n.178C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000599652
  gene symbol: ALDH16A1
  hgvsc: ENST00000599652.1:n.2174C>T
  variant of: http://identifiers.org/hgnc/28114
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8466
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4158
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8458
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7223
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5759
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8509
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2061
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2937
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8917
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2435
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3790
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ala676Ala
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum

19-49971730-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49971730
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49971730
    reference: chr 19
allele count: 1
allele frequency: 8.275679433281473e-6
allele num: 120836
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000599652
  gene symbol: ALDH16A1
  hgvsc: ENST00000599652.1:n.2177C>G
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000398675
  ensembl transcript: ENST00000433981
  gene symbol: ALDH16A1
  hgvsc: ENST00000433981.2:c.1536C>G
  hgvsp: ENSP00000398675.2:p.Phe512Leu
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000445088
  ensembl transcript: ENST00000540132
  gene symbol: ALDH16A1
  hgvsc: ENST00000540132.1:c.1542C>G
  hgvsp: ENSP00000445088.1:p.Phe514Leu
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000470160
  ensembl transcript: ENST00000593417
  gene symbol: ALDH16A1
  hgvsc: ENST00000593417.1:c.*1489C>G
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000594549
  gene symbol: ALDH16A1
  hgvsc: ENST00000594549.1:n.181C>G
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000469507
  ensembl transcript: ENST00000600265
  gene symbol: ALDH16A1
  hgvsc: ENST00000600265.1:c.*152C>G
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000293350
  ensembl transcript: ENST00000293350
  gene symbol: ALDH16A1
  hgvsc: ENST00000293350.4:c.2031C>G
  hgvsp: ENSP00000293350.3:p.Phe677Leu
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269469
  ensembl protein: ENSP00000470318
  ensembl transcript: ENST00000599536
  gene symbol: CTD-3148I10.9
  hgvsc: ENST00000599536.1:c.*120+3711C>G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000410142
  ensembl transcript: ENST00000455361
  gene symbol: ALDH16A1
  hgvsc: ENST00000455361.2:c.1878C>G
  hgvsp: ENSP00000410142.1:p.Phe626Leu
  variant of: http://identifiers.org/hgnc/28114
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8462
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2936
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8903
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8518
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7215
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2062
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5751
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4152
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1369
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8439
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24258
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Phe677Leu
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: South Asian
reference allele: C
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ

19-49971730-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49971730
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49971730
    reference: chr 19
allele count: 79
allele frequency: 6.537786752292363e-4
allele num: 120836
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269469
  ensembl protein: ENSP00000470318
  ensembl transcript: ENST00000599536
  gene symbol: CTD-3148I10.9
  hgvsc: ENST00000599536.1:c.*120+3711C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000599652
  gene symbol: ALDH16A1
  hgvsc: ENST00000599652.1:n.2177C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000398675
  ensembl transcript: ENST00000433981
  gene symbol: ALDH16A1
  hgvsc: ENST00000433981.2:c.1536C>T
  hgvsp: ENST00000433981.2:c.1536C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000445088
  ensembl transcript: ENST00000540132
  gene symbol: ALDH16A1
  hgvsc: ENST00000540132.1:c.1542C>T
  hgvsp: ENST00000540132.1:c.1542C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000469507
  ensembl transcript: ENST00000600265
  gene symbol: ALDH16A1
  hgvsc: ENST00000600265.1:c.*152C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000293350
  ensembl transcript: ENST00000293350
  gene symbol: ALDH16A1
  hgvsc: ENST00000293350.4:c.2031C>T
  hgvsp: ENST00000293350.4:c.2031C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000410142
  ensembl transcript: ENST00000455361
  gene symbol: ALDH16A1
  hgvsc: ENST00000455361.2:c.1878C>T
  hgvsp: ENST00000455361.2:c.1878C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000470160
  ensembl transcript: ENST00000593417
  gene symbol: ALDH16A1
  hgvsc: ENST00000593417.1:c.*1489C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000594549
  gene symbol: ALDH16A1
  hgvsc: ENST00000594549.1:n.181C>T
  variant of: http://identifiers.org/hgnc/28114
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2062
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7215
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4152
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1369
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8518
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5751
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 9.75e1
  variant carriers: 77
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8903
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8462
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8439
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2936
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Phe677Phe
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: African
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

19-49971731-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49971731
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49971731
    reference: chr 19
allele count: 1
allele frequency: 8.274994621253496e-6
allele num: 120846
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000398675
  ensembl transcript: ENST00000433981
  gene symbol: ALDH16A1
  hgvsc: ENST00000433981.2:c.1537G>A
  hgvsp: ENSP00000398675.2:p.Val513Met
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000293350
  ensembl transcript: ENST00000293350
  gene symbol: ALDH16A1
  hgvsc: ENST00000293350.4:c.2032G>A
  hgvsp: ENSP00000293350.3:p.Val678Met
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000410142
  ensembl transcript: ENST00000455361
  gene symbol: ALDH16A1
  hgvsc: ENST00000455361.2:c.1879G>A
  hgvsp: ENSP00000410142.1:p.Val627Met
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000470160
  ensembl transcript: ENST00000593417
  gene symbol: ALDH16A1
  hgvsc: ENST00000593417.1:c.*1490G>A
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000594549
  gene symbol: ALDH16A1
  hgvsc: ENST00000594549.1:n.182G>A
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000445088
  ensembl transcript: ENST00000540132
  gene symbol: ALDH16A1
  hgvsc: ENST00000540132.1:c.1543G>A
  hgvsp: ENSP00000445088.1:p.Val515Met
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269469
  ensembl protein: ENSP00000470318
  ensembl transcript: ENST00000599536
  gene symbol: CTD-3148I10.9
  hgvsc: ENST00000599536.1:c.*120+3712G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000599652
  gene symbol: ALDH16A1
  hgvsc: ENST00000599652.1:n.2178G>A
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000469507
  ensembl transcript: ENST00000600265
  gene symbol: ALDH16A1
  hgvsc: ENST00000600265.1:c.*153G>A
  variant of: http://identifiers.org/hgnc/28114
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2067
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8462
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5767
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8911
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8527
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2940
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4159
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8453
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7234
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3811
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Val678Met
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD

19-49971735-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49971735
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49971735
    reference: chr 19
allele count: 1
allele frequency: 8.271572260455268e-6
allele num: 120896
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000293350
  ensembl transcript: ENST00000293350
  gene symbol: ALDH16A1
  hgvsc: ENST00000293350.4:c.2036C>T
  hgvsp: ENSP00000293350.3:p.Ser679Phe
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000410142
  ensembl transcript: ENST00000455361
  gene symbol: ALDH16A1
  hgvsc: ENST00000455361.2:c.1883C>T
  hgvsp: ENSP00000410142.1:p.Ser628Phe
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000599652
  gene symbol: ALDH16A1
  hgvsc: ENST00000599652.1:n.2182C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000398675
  ensembl transcript: ENST00000433981
  gene symbol: ALDH16A1
  hgvsc: ENST00000433981.2:c.1541C>T
  hgvsp: ENSP00000398675.2:p.Ser514Phe
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000470160
  ensembl transcript: ENST00000593417
  gene symbol: ALDH16A1
  hgvsc: ENST00000593417.1:c.*1494C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000469507
  ensembl transcript: ENST00000600265
  gene symbol: ALDH16A1
  hgvsc: ENST00000600265.1:c.*157C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000445088
  ensembl transcript: ENST00000540132
  gene symbol: ALDH16A1
  hgvsc: ENST00000540132.1:c.1547C>T
  hgvsp: ENSP00000445088.1:p.Ser516Phe
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269469
  ensembl protein: ENSP00000470318
  ensembl transcript: ENST00000599536
  gene symbol: CTD-3148I10.9
  hgvsc: ENST00000599536.1:c.*120+3716C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000594549
  gene symbol: ALDH16A1
  hgvsc: ENST00000594549.1:n.186C>T
  variant of: http://identifiers.org/hgnc/28114
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4159
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7234
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8454
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8538
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8911
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5767
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8469
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2940
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2067
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ser679Phe
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: African
population: Latino
reference allele: C
site quality: DP
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum

19-49971737-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49971737
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49971737
    reference: chr 19
allele count: 1
allele frequency: 8.270204108637402e-6
allele num: 120916
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000594549
  gene symbol: ALDH16A1
  hgvsc: ENST00000594549.1:n.188C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000410142
  ensembl transcript: ENST00000455361
  gene symbol: ALDH16A1
  hgvsc: ENST00000455361.2:c.1885C>T
  hgvsp: ENST00000455361.2:c.1885C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000470160
  ensembl transcript: ENST00000593417
  gene symbol: ALDH16A1
  hgvsc: ENST00000593417.1:c.*1496C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000293350
  ensembl transcript: ENST00000293350
  gene symbol: ALDH16A1
  hgvsc: ENST00000293350.4:c.2038C>T
  hgvsp: ENST00000293350.4:c.2038C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000398675
  ensembl transcript: ENST00000433981
  gene symbol: ALDH16A1
  hgvsc: ENST00000433981.2:c.1543C>T
  hgvsp: ENST00000433981.2:c.1543C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000445088
  ensembl transcript: ENST00000540132
  gene symbol: ALDH16A1
  hgvsc: ENST00000540132.1:c.1549C>T
  hgvsp: ENST00000540132.1:c.1549C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000599652
  gene symbol: ALDH16A1
  hgvsc: ENST00000599652.1:n.2184C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000469507
  ensembl transcript: ENST00000600265
  gene symbol: ALDH16A1
  hgvsc: ENST00000600265.1:c.*159C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269469
  ensembl protein: ENSP00000470318
  ensembl transcript: ENST00000599536
  gene symbol: CTD-3148I10.9
  hgvsc: ENST00000599536.1:c.*120+3718C>T
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8540
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8467
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8916
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8455
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4159
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2940
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7233
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5767
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2067
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15166
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Leu680Leu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: QD

19-49971739-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49971739
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49971739
    reference: chr 19
allele count: 1
allele frequency: 8.270067318347971e-6
allele num: 120918
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000398675
  ensembl transcript: ENST00000433981
  gene symbol: ALDH16A1
  hgvsc: ENST00000433981.2:c.1545G>C
  hgvsp: ENST00000433981.2:c.1545G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000594549
  gene symbol: ALDH16A1
  hgvsc: ENST00000594549.1:n.190G>C
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000293350
  ensembl transcript: ENST00000293350
  gene symbol: ALDH16A1
  hgvsc: ENST00000293350.4:c.2040G>C
  hgvsp: ENST00000293350.4:c.2040G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000599652
  gene symbol: ALDH16A1
  hgvsc: ENST00000599652.1:n.2186G>C
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269469
  ensembl protein: ENSP00000470318
  ensembl transcript: ENST00000599536
  gene symbol: CTD-3148I10.9
  hgvsc: ENST00000599536.1:c.*120+3720G>C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000410142
  ensembl transcript: ENST00000455361
  gene symbol: ALDH16A1
  hgvsc: ENST00000455361.2:c.1887G>C
  hgvsp: ENST00000455361.2:c.1887G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000470160
  ensembl transcript: ENST00000593417
  gene symbol: ALDH16A1
  hgvsc: ENST00000593417.1:c.*1498G>C
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000469507
  ensembl transcript: ENST00000600265
  gene symbol: ALDH16A1
  hgvsc: ENST00000600265.1:c.*161G>C
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000445088
  ensembl transcript: ENST00000540132
  gene symbol: ALDH16A1
  hgvsc: ENST00000540132.1:c.1551G>C
  hgvsp: ENST00000540132.1:c.1551G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28114
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8454
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8537
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7234
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8914
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8460
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5768
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2067
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4159
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2940
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2428
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3477
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Leu680Leu
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

19-49971746-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49971746
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49971746
    reference: chr 19
allele count: 1
allele frequency: 8.267742575567167e-6
allele num: 120952
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000594549
  gene symbol: ALDH16A1
  hgvsc: ENST00000594549.1:n.197C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000599652
  gene symbol: ALDH16A1
  hgvsc: ENST00000599652.1:n.2193C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000293350
  ensembl transcript: ENST00000293350
  gene symbol: ALDH16A1
  hgvsc: ENST00000293350.4:c.2047C>T
  hgvsp: ENSP00000293350.3:p.Pro683Ser
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000469507
  ensembl transcript: ENST00000600265
  gene symbol: ALDH16A1
  hgvsc: ENST00000600265.1:c.*168C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000398675
  ensembl transcript: ENST00000433981
  gene symbol: ALDH16A1
  hgvsc: ENST00000433981.2:c.1552C>T
  hgvsp: ENSP00000398675.2:p.Pro518Ser
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269469
  ensembl protein: ENSP00000470318
  ensembl transcript: ENST00000599536
  gene symbol: CTD-3148I10.9
  hgvsc: ENST00000599536.1:c.*120+3727C>T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000470160
  ensembl transcript: ENST00000593417
  gene symbol: ALDH16A1
  hgvsc: ENST00000593417.1:c.*1505C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000410142
  ensembl transcript: ENST00000455361
  gene symbol: ALDH16A1
  hgvsc: ENST00000455361.2:c.1894C>T
  hgvsp: ENSP00000410142.1:p.Pro632Ser
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000445088
  ensembl transcript: ENST00000540132
  gene symbol: ALDH16A1
  hgvsc: ENST00000540132.1:c.1558C>T
  hgvsp: ENSP00000445088.1:p.Pro520Ser
  variant of: http://identifiers.org/hgnc/28114
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8456
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8459
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2067
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8536
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8913
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7235
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4159
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5768
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2940
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24216
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5267
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro683Ser
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum

19-49971748-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49971748
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49971748
    reference: chr 19
allele count: 4
allele frequency: 3.306659612459494e-5
allele num: 120968
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269469
  ensembl protein: ENSP00000470318
  ensembl transcript: ENST00000599536
  gene symbol: CTD-3148I10.9
  hgvsc: ENST00000599536.1:c.*120+3729C>T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000293350
  ensembl transcript: ENST00000293350
  gene symbol: ALDH16A1
  hgvsc: ENST00000293350.4:c.2049C>T
  hgvsp: ENST00000293350.4:c.2049C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000410142
  ensembl transcript: ENST00000455361
  gene symbol: ALDH16A1
  hgvsc: ENST00000455361.2:c.1896C>T
  hgvsp: ENST00000455361.2:c.1896C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000398675
  ensembl transcript: ENST00000433981
  gene symbol: ALDH16A1
  hgvsc: ENST00000433981.2:c.1554C>T
  hgvsp: ENST00000433981.2:c.1554C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000470160
  ensembl transcript: ENST00000593417
  gene symbol: ALDH16A1
  hgvsc: ENST00000593417.1:c.*1507C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000445088
  ensembl transcript: ENST00000540132
  gene symbol: ALDH16A1
  hgvsc: ENST00000540132.1:c.1560C>T
  hgvsp: ENST00000540132.1:c.1560C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000594549
  gene symbol: ALDH16A1
  hgvsc: ENST00000594549.1:n.199C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000469507
  ensembl transcript: ENST00000600265
  gene symbol: ALDH16A1
  hgvsc: ENST00000600265.1:c.*170C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000599652
  gene symbol: ALDH16A1
  hgvsc: ENST00000599652.1:n.2195C>T
  variant of: http://identifiers.org/hgnc/28114
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7233
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4158
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8551
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2067
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8913
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5768
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8452
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2939
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8460
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15132
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Pro683Pro
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

19-49971749-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49971749
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49971749
    reference: chr 19
allele count: 1
allele frequency: 8.266649031148734e-6
allele num: 120968
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000445088
  ensembl transcript: ENST00000540132
  gene symbol: ALDH16A1
  hgvsc: ENST00000540132.1:c.1561G>A
  hgvsp: ENSP00000445088.1:p.Ala521Thr
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000398675
  ensembl transcript: ENST00000433981
  gene symbol: ALDH16A1
  hgvsc: ENST00000433981.2:c.1555G>A
  hgvsp: ENSP00000398675.2:p.Ala519Thr
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000410142
  ensembl transcript: ENST00000455361
  gene symbol: ALDH16A1
  hgvsc: ENST00000455361.2:c.1897G>A
  hgvsp: ENSP00000410142.1:p.Ala633Thr
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000599652
  gene symbol: ALDH16A1
  hgvsc: ENST00000599652.1:n.2196G>A
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000594549
  gene symbol: ALDH16A1
  hgvsc: ENST00000594549.1:n.200G>A
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000293350
  ensembl transcript: ENST00000293350
  gene symbol: ALDH16A1
  hgvsc: ENST00000293350.4:c.2050G>A
  hgvsp: ENSP00000293350.3:p.Ala684Thr
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000469507
  ensembl transcript: ENST00000600265
  gene symbol: ALDH16A1
  hgvsc: ENST00000600265.1:c.*171G>A
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269469
  ensembl protein: ENSP00000470318
  ensembl transcript: ENST00000599536
  gene symbol: CTD-3148I10.9
  hgvsc: ENST00000599536.1:c.*120+3730G>A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000470160
  ensembl transcript: ENST00000593417
  gene symbol: ALDH16A1
  hgvsc: ENST00000593417.1:c.*1508G>A
  variant of: http://identifiers.org/hgnc/28114
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2067
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8452
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2939
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5768
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7234
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4160
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8913
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8546
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8465
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2430
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ala684Thr
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: FS
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum

19-49971757-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49971757
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49971757
    reference: chr 19
allele count: 2
allele frequency: 1.652810604432838e-5
allele num: 121006
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000469507
  ensembl transcript: ENST00000600265
  gene symbol: ALDH16A1
  hgvsc: ENST00000600265.1:c.*179C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000293350
  ensembl transcript: ENST00000293350
  gene symbol: ALDH16A1
  hgvsc: ENST00000293350.4:c.2058C>T
  hgvsp: ENST00000293350.4:c.2058C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000398675
  ensembl transcript: ENST00000433981
  gene symbol: ALDH16A1
  hgvsc: ENST00000433981.2:c.1563C>T
  hgvsp: ENST00000433981.2:c.1563C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000470160
  ensembl transcript: ENST00000593417
  gene symbol: ALDH16A1
  hgvsc: ENST00000593417.1:c.*1516C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269469
  ensembl protein: ENSP00000470318
  ensembl transcript: ENST00000599536
  gene symbol: CTD-3148I10.9
  hgvsc: ENST00000599536.1:c.*120+3738C>T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000445088
  ensembl transcript: ENST00000540132
  gene symbol: ALDH16A1
  hgvsc: ENST00000540132.1:c.1569C>T
  hgvsp: ENST00000540132.1:c.1569C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000410142
  ensembl transcript: ENST00000455361
  gene symbol: ALDH16A1
  hgvsc: ENST00000455361.2:c.1905C>T
  hgvsp: ENST00000455361.2:c.1905C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000599652
  gene symbol: ALDH16A1
  hgvsc: ENST00000599652.1:n.2204C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000594549
  gene symbol: ALDH16A1
  hgvsc: ENST00000594549.1:n.208C>T
  variant of: http://identifiers.org/hgnc/28114
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2067
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4161
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2939
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8906
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5768
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8462
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7232
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8576
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8453
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala686Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum

19-49971759-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49971759
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49971759
    reference: chr 19
allele count: 7
allele frequency: 5.785123966942149e-5
allele num: 121000
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000469507
  ensembl transcript: ENST00000600265
  gene symbol: ALDH16A1
  hgvsc: ENST00000600265.1:c.*181A>G
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000470160
  ensembl transcript: ENST00000593417
  gene symbol: ALDH16A1
  hgvsc: ENST00000593417.1:c.*1518A>G
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000599652
  gene symbol: ALDH16A1
  hgvsc: ENST00000599652.1:n.2206A>G
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000398675
  ensembl transcript: ENST00000433981
  gene symbol: ALDH16A1
  hgvsc: ENST00000433981.2:c.1565A>G
  hgvsp: ENSP00000398675.2:p.Tyr522Cys
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269469
  ensembl protein: ENSP00000470318
  ensembl transcript: ENST00000599536
  gene symbol: CTD-3148I10.9
  hgvsc: ENST00000599536.1:c.*120+3740A>G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000445088
  ensembl transcript: ENST00000540132
  gene symbol: ALDH16A1
  hgvsc: ENST00000540132.1:c.1571A>G
  hgvsp: ENSP00000445088.1:p.Tyr524Cys
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000293350
  ensembl transcript: ENST00000293350
  gene symbol: ALDH16A1
  hgvsc: ENST00000293350.4:c.2060A>G
  hgvsp: ENSP00000293350.3:p.Tyr687Cys
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000410142
  ensembl transcript: ENST00000455361
  gene symbol: ALDH16A1
  hgvsc: ENST00000455361.2:c.1907A>G
  hgvsp: ENSP00000410142.1:p.Tyr636Cys
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000594549
  gene symbol: ALDH16A1
  hgvsc: ENST00000594549.1:n.210A>G
  variant of: http://identifiers.org/hgnc/28114
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7231
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5768
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8575
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4160
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8452
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8464
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8903
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2939
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2066
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2117
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Tyr687Cys
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
reference allele: A
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ

19-49971760-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49971760
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49971760
    reference: chr 19
allele count: 3
allele frequency: 2.479379824459908e-5
allele num: 120998
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000410142
  ensembl transcript: ENST00000455361
  gene symbol: ALDH16A1
  hgvsc: ENST00000455361.2:c.1908C>T
  hgvsp: ENST00000455361.2:c.1908C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000594549
  gene symbol: ALDH16A1
  hgvsc: ENST00000594549.1:n.211C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000470160
  ensembl transcript: ENST00000593417
  gene symbol: ALDH16A1
  hgvsc: ENST00000593417.1:c.*1519C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000293350
  ensembl transcript: ENST00000293350
  gene symbol: ALDH16A1
  hgvsc: ENST00000293350.4:c.2061C>T
  hgvsp: ENST00000293350.4:c.2061C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000398675
  ensembl transcript: ENST00000433981
  gene symbol: ALDH16A1
  hgvsc: ENST00000433981.2:c.1566C>T
  hgvsp: ENST00000433981.2:c.1566C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000445088
  ensembl transcript: ENST00000540132
  gene symbol: ALDH16A1
  hgvsc: ENST00000540132.1:c.1572C>T
  hgvsp: ENST00000540132.1:c.1572C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269469
  ensembl protein: ENSP00000470318
  ensembl transcript: ENST00000599536
  gene symbol: CTD-3148I10.9
  hgvsc: ENST00000599536.1:c.*120+3741C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000599652
  gene symbol: ALDH16A1
  hgvsc: ENST00000599652.1:n.2207C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000469507
  ensembl transcript: ENST00000600265
  gene symbol: ALDH16A1
  hgvsc: ENST00000600265.1:c.*182C>T
  variant of: http://identifiers.org/hgnc/28114
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4160
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2940
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8568
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8906
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7230
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8470
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2066
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8454
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5769
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5271
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Tyr687Tyr
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum

19-49971761-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49971761
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49971761
    reference: chr 19
allele count: 6
allele frequency: 4.958104021022361e-5
allele num: 121014
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000469507
  ensembl transcript: ENST00000600265
  gene symbol: ALDH16A1
  hgvsc: ENST00000600265.1:c.*183G>A
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000293350
  ensembl transcript: ENST00000293350
  gene symbol: ALDH16A1
  hgvsc: ENST00000293350.4:c.2062G>A
  hgvsp: ENSP00000293350.3:p.Gly688Ser
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000599652
  gene symbol: ALDH16A1
  hgvsc: ENST00000599652.1:n.2208G>A
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000470160
  ensembl transcript: ENST00000593417
  gene symbol: ALDH16A1
  hgvsc: ENST00000593417.1:c.*1520G>A
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269469
  ensembl protein: ENSP00000470318
  ensembl transcript: ENST00000599536
  gene symbol: CTD-3148I10.9
  hgvsc: ENST00000599536.1:c.*120+3742G>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000398675
  ensembl transcript: ENST00000433981
  gene symbol: ALDH16A1
  hgvsc: ENST00000433981.2:c.1567G>A
  hgvsp: ENSP00000398675.2:p.Gly523Ser
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000445088
  ensembl transcript: ENST00000540132
  gene symbol: ALDH16A1
  hgvsc: ENST00000540132.1:c.1573G>A
  hgvsp: ENSP00000445088.1:p.Gly525Ser
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000594549
  gene symbol: ALDH16A1
  hgvsc: ENST00000594549.1:n.212G>A
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000410142
  ensembl transcript: ENST00000455361
  gene symbol: ALDH16A1
  hgvsc: ENST00000455361.2:c.1909G>A
  hgvsp: ENSP00000410142.1:p.Gly637Ser
  variant of: http://identifiers.org/hgnc/28114
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4160
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8453
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7230
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5768
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8566
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8472
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2941
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8903
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2066
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gly688Ser
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum

19-49971763-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49971763
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49971763
    reference: chr 19
allele count: 1
allele frequency: 8.262277744728666e-6
allele num: 121032
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000594549
  gene symbol: ALDH16A1
  hgvsc: ENST00000594549.1:n.214C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000293350
  ensembl transcript: ENST00000293350
  gene symbol: ALDH16A1
  hgvsc: ENST00000293350.4:c.2064C>T
  hgvsp: ENST00000293350.4:c.2064C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000445088
  ensembl transcript: ENST00000540132
  gene symbol: ALDH16A1
  hgvsc: ENST00000540132.1:c.1575C>T
  hgvsp: ENST00000540132.1:c.1575C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000599652
  gene symbol: ALDH16A1
  hgvsc: ENST00000599652.1:n.2210C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000470160
  ensembl transcript: ENST00000593417
  gene symbol: ALDH16A1
  hgvsc: ENST00000593417.1:c.*1522C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000269469
  ensembl protein: ENSP00000470318
  ensembl transcript: ENST00000599536
  gene symbol: CTD-3148I10.9
  hgvsc: ENST00000599536.1:c.*120+3744C>T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000469507
  ensembl transcript: ENST00000600265
  gene symbol: ALDH16A1
  hgvsc: ENST00000600265.1:c.*185C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000398675
  ensembl transcript: ENST00000433981
  gene symbol: ALDH16A1
  hgvsc: ENST00000433981.2:c.1569C>T
  hgvsp: ENST00000433981.2:c.1569C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000410142
  ensembl transcript: ENST00000455361
  gene symbol: ALDH16A1
  hgvsc: ENST00000455361.2:c.1911C>T
  hgvsp: ENST00000455361.2:c.1911C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28114
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2941
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7231
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8904
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2066
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4161
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8454
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8573
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8466
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5768
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24215
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 15171
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Gly688Gly
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 1731
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22042
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26675
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1376
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 29
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 210
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 691
bin: 2.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6380
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 108
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2530
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1178
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 104
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2172
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 282
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.37452e5

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.35e-2

FS
type: SiteQuality
SIO_000300: 4.638e0

VQSLOD
type: SiteQuality
SIO_000300: -1.247e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.27e-1

QD
type: SiteQuality
SIO_000300: 1.115e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.080000000000001e-1

GenotypeQuality
all individuals: 190
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28127
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 607
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 9
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1346
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 82
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 258
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1548
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5678
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 4.793863854266539e-4
allele num: 2086
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 106
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1126
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.54e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.84e-2

MQ
type: SiteQuality
SIO_000300: 5.824e1

DP
type: SiteQuality
SIO_000300: 3.14095e5

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.67e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.252e-1

QD
type: SiteQuality
SIO_000300: 2.159e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.06e-1

GenotypeQuality
all individuals: 28
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18708
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28277
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2512
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1372
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1396
bin: 1.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 260
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1114
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1584
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 104
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 4.798464491362764e-4
allele num: 2084
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5736
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 82
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 4.51e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 6.33e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.751e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.98e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.79e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -6.33e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.98e-1

DP
type: SiteQuality
SIO_000300: 3.13958e5

GenotypeQuality
all individuals: 64
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1788
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 573
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 13
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 234
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1984
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1062
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1060
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5180
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 110
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.09e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.07e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.2e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.2e-1

DP
type: SiteQuality
SIO_000300: 2.95875e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.2e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.908e0

GenotypeQuality
all individuals: 75
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29583
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16921
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1366
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1128
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 178
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2399
bin: 1.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1008
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 114
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1038
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.937007874015748e-4
allele num: 5080
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 226
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1964
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.94493e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.27e0

VQSLOD
type: SiteQuality
SIO_000300: 4.29e0

QD
type: SiteQuality
SIO_000300: 1.489e1

MQRankSum
type: SiteQuality
SIO_000300: 9.19e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.15e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.7e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

GenotypeQuality
all individuals: 1274
bin: 1.25e1
variant carriers: 18

GenotypeQuality
all individuals: 29514
bin: 7.5e0
variant carriers: 18

GenotypeQuality
all individuals: 51
bin: 4.75e1
variant carriers: 9

GenotypeQuality
all individuals: 524
bin: 2.75e1
variant carriers: 16

GenotypeQuality
all individuals: 52
bin: 7.25e1
variant carriers: 16

GenotypeQuality
all individuals: 17224
bin: 2.25e1
variant carriers: 32

GenotypeQuality
all individuals: 25
bin: 8.75e1
variant carriers: 19

GenotypeQuality
all individuals: 39
bin: 5.75e1
variant carriers: 30

GenotypeQuality
all individuals: 1165
bin: 6.25e1
variant carriers: 32

GenotypeQuality
all individuals: 29
bin: 9.25e1
variant carriers: 26

GenotypeQuality
all individuals: 1955
bin: 1.75e1
variant carriers: 33

GenotypeQuality
all individuals: 36
bin: 7.75e1
variant carriers: 15

GenotypeQuality
all individuals: 55
bin: 5.25e1
variant carriers: 21

African
type: Population
allele count: 365
allele frequency: 1.710402999062793e-1
allele num: 2134
num of homozygotes: 14

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1038
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 120
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62
num of homozygotes: 0

Latino
type: Population
allele count: 11
allele frequency: 4.621848739495799e-2
allele num: 238
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 9.765625e-4
allele num: 5120
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.823182711198428e-4
allele num: 1018
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.65e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.73e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.41e-2

QD
type: SiteQuality
SIO_000300: 1.356e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.45e-1

FS
type: SiteQuality
SIO_000300: 5.81e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.98e-1

DP
type: SiteQuality
SIO_000300: 2.96298e5

GenotypeQuality
all individuals: 4
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 62
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15537
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 395
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2151
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 977
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1822
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 202
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 778
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4772
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 106
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 954
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.469999999999999e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

QD
type: SiteQuality
SIO_000300: 1.094e1

VQSLOD
type: SiteQuality
SIO_000300: -1.756e0

DP
type: SiteQuality
SIO_000300: 2.81896e5

MQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.370000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.370000000000001e-1

GenotypeQuality
all individuals: 2003
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1291
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15315
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 153
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1953
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 467
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 110
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1766
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.171081198436822e-4
allele num: 4606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 682
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 920
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.73706e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.53e-2

QD
type: SiteQuality
SIO_000300: 1.05e0

FS
type: SiteQuality
SIO_000300: 1.2793e1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.27e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.066e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.45e0

MQRankSum
type: SiteQuality
SIO_000300: 6.3e-1

GenotypeQuality
all individuals: 38
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1242
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 958
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 424
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 308
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 102
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4372
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1688
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 588
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.660000000000001e-2

QD
type: SiteQuality
SIO_000300: 9.5e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.46e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 9.379999999999999e-1

DP
type: SiteQuality
SIO_000300: 2.64859e5

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.48e-1

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 8

GenotypeQuality
all individuals: 1197
bin: 1.25e1
variant carriers: 10

GenotypeQuality
all individuals: 78
bin: 3.75e1
variant carriers: 2

GenotypeQuality
all individuals: 32698
bin: 7.5e0
variant carriers: 10

GenotypeQuality
all individuals: 12079
bin: 2.25e1
variant carriers: 11

GenotypeQuality
all individuals: 2202
bin: 2.5e0
variant carriers: 2

GenotypeQuality
all individuals: 142
bin: 9.75e1
variant carriers: 132

GenotypeQuality
all individuals: 30
bin: 5.25e1
variant carriers: 10

GenotypeQuality
all individuals: 21
bin: 7.75e1
variant carriers: 6

GenotypeQuality
all individuals: 7
bin: 8.75e1
variant carriers: 5

GenotypeQuality
all individuals: 373
bin: 2.75e1
variant carriers: 14

GenotypeQuality
all individuals: 261
bin: 3.25e1
variant carriers: 7

GenotypeQuality
all individuals: 775
bin: 6.25e1
variant carriers: 9

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 80
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.175983436853002e-4
allele num: 3864
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 448
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50
num of homozygotes: 0

African
type: Population
allele count: 118
allele frequency: 7.311028500619579e-2
allele num: 1614
num of homozygotes: 1

Latino
type: Population
allele count: 3
allele frequency: 1.807228915662651e-2
allele num: 166
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 734
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.445e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.809999999999999e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.75e0

MQRankSum
type: SiteQuality
SIO_000300: 3.82e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

FS
type: SiteQuality
SIO_000300: 6.53e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.25e-1

DP
type: SiteQuality
SIO_000300: 2.39957e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

GenotypeQuality
all individuals: 10
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1295
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8561
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3064
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1252
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 328
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 134
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.589e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.59e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.067e0

VQSLOD
type: SiteQuality
SIO_000300: -2.258e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.01e-2

DP
type: SiteQuality
SIO_000300: 2.06042e5

QD
type: SiteQuality
SIO_000300: 1.042e1

GenotypeQuality
all individuals: 9
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31760
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 7.25e1
variant carriers: 2

GenotypeQuality
all individuals: 16
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 640
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1454
bin: 1.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 176
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1426
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 78
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.2e-1

QD
type: SiteQuality
SIO_000300: 5.49e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.25e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.43095e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.256e0

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.2e-1

GenotypeQuality
all individuals: 3
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1698
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 14
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1042
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 134
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 150
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 378
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e-1

FS
type: SiteQuality
SIO_000300: 3.519e0

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.46e-2

DP
type: SiteQuality
SIO_000300: 1.23897e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.199e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.56e-1

GenotypeQuality
all individuals: 7700
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 26948
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 11
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1943
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 8.75e1
variant carriers: 3

GenotypeQuality
all individuals: 12
bin: 5.25e1
variant carriers: 3

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.0e-2
allele num: 150
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 378
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1042
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 134
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e-1

QD
type: SiteQuality
SIO_000300: 1.199e1

DP
type: SiteQuality
SIO_000300: 1.23897e5

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.519e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.46e-2

VQSLOD
type: SiteQuality
SIO_000300: 9.56e-1

GenotypeQuality
all individuals: 5
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1936
bin: 1.25e1
variant carriers: 6

GenotypeQuality
all individuals: 186
bin: 2.75e1
variant carriers: 8

GenotypeQuality
all individuals: 2
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 27129
bin: 7.5e0
variant carriers: 18

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 3

GenotypeQuality
all individuals: 27
bin: 4.75e1
variant carriers: 4

GenotypeQuality
all individuals: 157
bin: 3.25e1
variant carriers: 4

GenotypeQuality
all individuals: 72
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 37
bin: 9.75e1
variant carriers: 28

GenotypeQuality
all individuals: 5
bin: 8.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1760
bin: 2.25e1
variant carriers: 11

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 146
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 1.612903225806452e-2
allele num: 124
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 9.689922480620155e-4
allele num: 1032
num of homozygotes: 0

African
type: Population
allele count: 17
allele frequency: 4.473684210526316e-2
allele num: 380
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 4.6875e-2
allele num: 64
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.659999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.3e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.65e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.320000000000001e-2

QD
type: SiteQuality
SIO_000300: 1.713e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.2406e5

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e-1

GenotypeQuality
all individuals: 73
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2035
bin: 1.25e1
variant carriers: 2

GenotypeQuality
all individuals: 155
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 25
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1456
bin: 2.25e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 970
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 136
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 8.333333333333333e-3
allele num: 120
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.808988764044944e-3
allele num: 356
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.58e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.840000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.72e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

DP
type: SiteQuality
SIO_000300: 1.20943e5

QD
type: SiteQuality
SIO_000300: 1.409e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

GenotypeQuality
all individuals: 4
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8855
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 25529
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 25
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 64
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2035
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 120
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 136
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 970
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 356
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.409e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.58e0

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.840000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.20943e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.72e-2

GenotypeQuality
all individuals: 15
bin: 7.25e1
variant carriers: 4

GenotypeQuality
all individuals: 12
bin: 5.25e1
variant carriers: 4

GenotypeQuality
all individuals: 26
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 12

GenotypeQuality
all individuals: 191
bin: 2.75e1
variant carriers: 16

GenotypeQuality
all individuals: 71
bin: 6.25e1
variant carriers: 4

GenotypeQuality
all individuals: 156
bin: 3.25e1
variant carriers: 4

GenotypeQuality
all individuals: 25057
bin: 7.5e0
variant carriers: 23

GenotypeQuality
all individuals: 1402
bin: 2.25e1
variant carriers: 10

GenotypeQuality
all individuals: 17
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 9
bin: 9.25e1
variant carriers: 6

GenotypeQuality
all individuals: 74
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 24
allele frequency: 6.593406593406594e-2
allele num: 364
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 968
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 140
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 118
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.35e-1

FS
type: SiteQuality
SIO_000300: 1.089e0

DP
type: SiteQuality
SIO_000300: 1.20585e5

VQSLOD
type: SiteQuality
SIO_000300: 9.79e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.39e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

QD
type: SiteQuality
SIO_000300: 1.508e1

MQRankSum
type: SiteQuality
SIO_000300: 5.55e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9619
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1328
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2096
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 114
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 958
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 342
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 140
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.20816e5

QD
type: SiteQuality
SIO_000300: 1.419e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.166e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.018e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.370000000000001e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.370000000000001e-1

GenotypeQuality
all individuals: 3410
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 945
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1402
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3477
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26219
bin: 9.75e1
variant carriers: 71

GenotypeQuality
all individuals: 540
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1998
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 616
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 2041
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1475
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 645
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1088
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5859
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 732
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3648
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 65
allele frequency: 6.617796782732641e-3
allele num: 9822
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.763046544428773e-4
allele num: 11344
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 824
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13448
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.57952930026852e-5
allele num: 63310
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 5.980861244019139e-4
allele num: 8360
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6512
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.326e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.354e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.0e-1

DP
type: SiteQuality
SIO_000300: 2.135758e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.99e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.55e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.22e-1

GenotypeQuality
all individuals: 6472
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 810
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 933
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1327
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 583
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 625
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2025
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1462
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3469
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3537
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26245
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3841
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 355
bin: 1.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11362
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13656
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9852
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6516
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 824
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.577237311125832e-5
allele num: 63402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8360
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.019e1

FS
type: SiteQuality
SIO_000300: 1.352e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.53e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.15e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.47e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.76e-1

DP
type: SiteQuality
SIO_000300: 2.142583e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.32e-1

MQ
type: SiteQuality
SIO_000300: 5.95e1

GenotypeQuality
all individuals: 39438
bin: 9.75e1
variant carriers: 30515

GenotypeQuality
all individuals: 513
bin: 2.5e0
variant carriers: 16

GenotypeQuality
all individuals: 2337
bin: 6.75e1
variant carriers: 232

GenotypeQuality
all individuals: 743
bin: 3.75e1
variant carriers: 212

GenotypeQuality
all individuals: 553
bin: 4.75e1
variant carriers: 226

GenotypeQuality
all individuals: 4080
bin: 6.25e1
variant carriers: 219

GenotypeQuality
all individuals: 1295
bin: 7.25e1
variant carriers: 192

GenotypeQuality
all individuals: 277
bin: 1.75e1
variant carriers: 114

GenotypeQuality
all individuals: 180
bin: 1.25e1
variant carriers: 61

GenotypeQuality
all individuals: 393
bin: 5.75e1
variant carriers: 165

GenotypeQuality
all individuals: 789
bin: 3.25e1
variant carriers: 191

GenotypeQuality
all individuals: 1169
bin: 8.75e1
variant carriers: 209

GenotypeQuality
all individuals: 1803
bin: 9.25e1
variant carriers: 262

GenotypeQuality
all individuals: 1960
bin: 8.25e1
variant carriers: 246

GenotypeQuality
all individuals: 428
bin: 5.25e1
variant carriers: 214

East Asian
type: Population
allele count: 2379
allele frequency: 2.858000961076406e-1
allele num: 8324
num of homozygotes: 337

Other
type: Population
allele count: 350
allele frequency: 4.156769596199525e-1
allele num: 842
num of homozygotes: 64

Latino
type: Population
allele count: 2274
allele frequency: 2.007060900264784e-1
allele num: 11330
num of homozygotes: 255

African
type: Population
allele count: 4267
allele frequency: 4.309230458493234e-1
allele num: 9902
num of homozygotes: 936

South Asian
type: Population
allele count: 5432
allele frequency: 3.786949247071946e-1
allele num: 14344
num of homozygotes: 1025

European (Finnish)
type: Population
allele count: 2359
allele frequency: 3.635943279901356e-1
allele num: 6488
num of homozygotes: 432

European (Non-Finnish)
type: Population
allele count: 22971
allele frequency: 3.608841827436687e-1
allele num: 63652
num of homozygotes: 4201

FS
type: SiteQuality
SIO_000300: 4.591e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.04e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.15e-2

VQSLOD
type: SiteQuality
SIO_000300: 6.34e-1

DP
type: SiteQuality
SIO_000300: 2.414969e6

MQ
type: SiteQuality
SIO_000300: 5.966e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.899e0

MQRankSum
type: SiteQuality
SIO_000300: 8.3e-2

QD
type: SiteQuality
SIO_000300: 1.826e1

GenotypeQuality
all individuals: 3459
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1754
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24238
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 473
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2091
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2294
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 662
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 730
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3766
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8926
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1153
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3713
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8372
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9948
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11410
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6540
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.561524047470331e-5
allele num: 64040
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.36e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.154e-1

QD
type: SiteQuality
SIO_000300: 1.888e1

MQRankSum
type: SiteQuality
SIO_000300: 8.699999999999999e-2

MQ
type: SiteQuality
SIO_000300: 5.951e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.805e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

FS
type: SiteQuality
SIO_000300: 2.258e0

DP
type: SiteQuality
SIO_000300: 2.297435e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.79e-1

GenotypeQuality
all individuals: 477
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3771
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2293
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1784
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1126
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 723
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 973
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2094
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9286
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24235
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3454
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 351
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9942
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8374
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11408
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.560500608595237e-5
allele num: 64082
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14660
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.343e1

VQSLOD
type: SiteQuality
SIO_000300: 4.1e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.913e0

DP
type: SiteQuality
SIO_000300: 2.299485e6

FS
type: SiteQuality
SIO_000300: 2.204e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.0e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.37e0

MQ
type: SiteQuality
SIO_000300: 5.963e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

GenotypeQuality
all individuals: 480
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1810
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4567
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 407
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9442
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3761
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24348
bin: 9.75e1
variant carriers: 135

GenotypeQuality
all individuals: 1096
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 286
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2286
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2089
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14668
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64094
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9952
num of homozygotes: 0

East Asian
type: Population
allele count: 135
allele frequency: 1.612132791975161e-2
allele num: 8374
num of homozygotes: 1

Other
type: Population
allele count: 1
allele frequency: 1.173708920187793e-3
allele num: 852
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11408
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6546
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.38e0

MQ
type: SiteQuality
SIO_000300: 5.032e1

QD
type: SiteQuality
SIO_000300: 1.786e1

MQRankSum
type: SiteQuality
SIO_000300: -4.535e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.37e0

FS
type: SiteQuality
SIO_000300: 1.2064e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

DP
type: SiteQuality
SIO_000300: 2.30196e6

GenotypeQuality
all individuals: 2089
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1808
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 135

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1086
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3758
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64106
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.173708920187793e-3
allele num: 852
num of homozygotes: 0

East Asian
type: Population
allele count: 135
allele frequency: 1.612517916865743e-2
allele num: 8372
num of homozygotes: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11410
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9954
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14678
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6546
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.204e1

VQSLOD
type: SiteQuality
SIO_000300: 1.8e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.58e-1

MQ
type: SiteQuality
SIO_000300: 5.145e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.83e0

FS
type: SiteQuality
SIO_000300: 1.2064e1

MQRankSum
type: SiteQuality
SIO_000300: -4.135e0

DP
type: SiteQuality
SIO_000300: 2.304429e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.56e-1

GenotypeQuality
all individuals: 2315
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3738
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 737
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 214
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variant carriers: 0

GenotypeQuality
all individuals: 445
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GenotypeQuality
all individuals: 514
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 547
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variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4729
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 4
allele frequency: 4.002401440864519e-4
allele num: 9994
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11422
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15102
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8390
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64358
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.324773e6

VQSLOD
type: SiteQuality
SIO_000300: -1.577e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

QD
type: SiteQuality
SIO_000300: 1.316e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.73e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.3e-2

FS
type: SiteQuality
SIO_000300: 1.3067e1

MQRankSum
type: SiteQuality
SIO_000300: 9.8e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.5e-1

MQ
type: SiteQuality
SIO_000300: 5.974e1

GenotypeQuality
all individuals: 207
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3800
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 484
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 694
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variant carriers: 0

GenotypeQuality
all individuals: 4766
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variant carriers: 0

GenotypeQuality
all individuals: 45
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GenotypeQuality
all individuals: 73
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variant carriers: 0

GenotypeQuality
all individuals: 74
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variant carriers: 0

GenotypeQuality
all individuals: 3747
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variant carriers: 0

GenotypeQuality
all individuals: 54
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variant carriers: 0

GenotypeQuality
all individuals: 24280
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 3462
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2328
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11529
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.525785779676533e-4
allele num: 6554
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11426
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15214
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9998
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8392
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.10481867858917e-5
allele num: 64416
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.855e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.12e0

DP
type: SiteQuality
SIO_000300: 2.326968e6

MQRankSum
type: SiteQuality
SIO_000300: 4.57e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.47e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

FS
type: SiteQuality
SIO_000300: 1.0432e1

QD
type: SiteQuality
SIO_000300: 1.224e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.61e-1

MQ
type: SiteQuality
SIO_000300: 5.924e1

GenotypeQuality
all individuals: 46
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24357
bin: 9.75e1
variant carriers: 235

GenotypeQuality
all individuals: 279
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3798
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 2357
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1118
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3759
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
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variant carriers: 1

GenotypeQuality
all individuals: 86
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variant carriers: 0

GenotypeQuality
all individuals: 13172
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 5.25e1
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GenotypeQuality
all individuals: 2105
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3458
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 211
allele frequency: 2.100338443161457e-2
allele num: 10046
num of homozygotes: 2

South Asian
type: Population
allele count: 4
allele frequency: 2.520796571716663e-4
allele num: 15868
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.1441647597254e-3
allele num: 874
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8416
num of homozygotes: 0

Latino
type: Population
allele count: 20
allele frequency: 1.747030048916841e-3
allele num: 11448
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.62092973106189e-5
allele num: 64922
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 6.25e0

DP
type: SiteQuality
SIO_000300: 2.359962e6

MQ
type: SiteQuality
SIO_000300: 5.975e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.53e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.42e-1

QD
type: SiteQuality
SIO_000300: 1.432e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.830000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.1e0

GenotypeQuality
all individuals: 369
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1085
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24238
bin: 9.75e1
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GenotypeQuality
all individuals: 37
bin: 1.75e1
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GenotypeQuality
all individuals: 13272
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 218
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variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4954
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variant carriers: 0

GenotypeQuality
all individuals: 97
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variant carriers: 0

GenotypeQuality
all individuals: 25
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variant carriers: 0

GenotypeQuality
all individuals: 3473
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GenotypeQuality
all individuals: 263
bin: 3.25e1
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GenotypeQuality
all individuals: 2112
bin: 8.75e1
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GenotypeQuality
all individuals: 2371
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3768
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3813
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64960
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11448
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.954210631096954e-5
allele num: 10046
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8418
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.183e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.92e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.995e-1

FS
type: SiteQuality
SIO_000300: 2.764e0

MQRankSum
type: SiteQuality
SIO_000300: 2.14e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 6.52e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.1e-2

DP
type: SiteQuality
SIO_000300: 2.353009e6

MQ
type: SiteQuality
SIO_000300: 5.96e1

GenotypeQuality
all individuals: 37
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4978
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variant carriers: 0

GenotypeQuality
all individuals: 243
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variant carriers: 0

GenotypeQuality
all individuals: 204
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GenotypeQuality
all individuals: 1062
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GenotypeQuality
all individuals: 3771
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GenotypeQuality
all individuals: 354
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GenotypeQuality
all individuals: 37
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GenotypeQuality
all individuals: 3814
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GenotypeQuality
all individuals: 100
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GenotypeQuality
all individuals: 2384
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GenotypeQuality
all individuals: 2114
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GenotypeQuality
all individuals: 79
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GenotypeQuality
all individuals: 74
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GenotypeQuality
all individuals: 24235
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3475
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11452
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8418
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.278252134605726e-5
allele num: 15928
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65002
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10050
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

QD
type: SiteQuality
SIO_000300: 2.748e1

DP
type: SiteQuality
SIO_000300: 2.354256e6

VQSLOD
type: SiteQuality
SIO_000300: -2.223e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.744e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.6e-2

MQ
type: SiteQuality
SIO_000300: 5.977e1

MQRankSum
type: SiteQuality
SIO_000300: -1.5e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.81e-1

GenotypeQuality
all individuals: 38
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 322
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GenotypeQuality
all individuals: 3765
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GenotypeQuality
all individuals: 77
bin: 4.75e1
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GenotypeQuality
all individuals: 69
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GenotypeQuality
all individuals: 5067
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GenotypeQuality
all individuals: 136
bin: 3.25e1
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GenotypeQuality
all individuals: 19
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GenotypeQuality
all individuals: 3477
bin: 9.25e1
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GenotypeQuality
all individuals: 24233
bin: 9.75e1
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GenotypeQuality
all individuals: 13839
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2391
bin: 7.25e1
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GenotypeQuality
all individuals: 2120
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3806
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.722958827634333e-5
allele num: 11464
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10070
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8420
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65322
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16198
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.318e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 7.13e-1

FS
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VQSLOD
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MQRankSum
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MQ
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 9.0e-2

BaseQRankSum
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SIO_000300: -2.221e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8418
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.529145513487063e-5
allele num: 65396
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10074
num of homozygotes: 0

Latino
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allele frequency: 8.722958827634333e-5
allele num: 11464
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.87e-1

VQSLOD
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QD
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ClippingRankSum
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DP
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MQRankSum
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MQ
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 8.722958827634333e-5
allele num: 11464
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8418
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African
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allele frequency: 0.0e0
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South Asian
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allele num: 16226
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InbreedingCoeff
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FS
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ReadPosRankSum
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QD
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BaseQRankSum
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ClippingRankSum
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DP
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MQRankSum
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VQSLOD
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MQ
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SIO_000300: 5.944e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11470
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65440
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South Asian
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Other
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East Asian
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allele frequency: 3.561253561253561e-4
allele num: 8424
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African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
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ReadPosRankSum
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FS
type: SiteQuality
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ClippingRankSum
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QD
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MQRankSum
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MQ
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InbreedingCoeff
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DP
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 14

European (Non-Finnish)
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allele frequency: 4.566349051721514e-5
allele num: 65698
num of homozygotes: 0

South Asian
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allele frequency: 6.701596198367247e-4
allele num: 16414
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African
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allele frequency: 0.0e0
allele num: 10108
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8440
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6586
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11472
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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VQSLOD
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QD
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MQRankSum
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FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.162e1

DP
type: SiteQuality
SIO_000300: 2.373666e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 1.184834123222749e-4
allele num: 8440
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
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South Asian
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QD
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MQRankSum
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ReadPosRankSum
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MQ
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.373666e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
allele num: 8440
num of homozygotes: 0

African
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allele frequency: 0.0e0
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Other
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South Asian
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Latino
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European (Finnish)
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European (Non-Finnish)
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allele num: 65714
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MQ
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BaseQRankSum
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VQSLOD
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QD
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ReadPosRankSum
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InbreedingCoeff
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FS
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ClippingRankSum
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MQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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African
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Latino
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European (Finnish)
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European (Non-Finnish)
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Other
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QD
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DP
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BaseQRankSum
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VQSLOD
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FS
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InbreedingCoeff
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MQRankSum
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MQ
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ReadPosRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 1.520542529574552e-5
allele num: 65766
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African
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Other
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East Asian
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allele frequency: 0.0e0
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Latino
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European (Finnish)
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South Asian
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VQSLOD
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FS
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InbreedingCoeff
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QD
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DP
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ReadPosRankSum
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MQRankSum
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ClippingRankSum
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MQ
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65830
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8448
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10124
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16444
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.710801393728223e-5
allele num: 11480
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.8e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.4e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -8.728e0

MQRankSum
type: SiteQuality
SIO_000300: -1.176e0

DP
type: SiteQuality
SIO_000300: 2.376657e6

InbreedingCoeff
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SIO_000300: -5.0e-4

MQ
type: SiteQuality
SIO_000300: 5.949e1

FS
type: SiteQuality
SIO_000300: 3.876e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.2e-2

QD
type: SiteQuality
SIO_000300: 1.186e1

GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11482
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16438
num of homozygotes: 0

European (Non-Finnish)
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allele count: 4
allele frequency: 6.076072426783327e-5
allele num: 65832
num of homozygotes: 0

African
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allele count: 2
allele frequency: 1.975503753457131e-4
allele num: 10124
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8450
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.965e1

DP
type: SiteQuality
SIO_000300: 2.37789e6

FS
type: SiteQuality
SIO_000300: 2.471e0

VQSLOD
type: SiteQuality
SIO_000300: 1.76e0

BaseQRankSum
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SIO_000300: -2.685e0

ReadPosRankSum
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SIO_000300: 1.08e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQRankSum
type: SiteQuality
SIO_000300: 7.7e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -5.91e-1

QD
type: SiteQuality
SIO_000300: 1.492e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8458
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10130
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.516990291262136e-4
allele num: 6592
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16444
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65868
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.73e-1

DP
type: SiteQuality
SIO_000300: 2.378055e6

QD
type: SiteQuality
SIO_000300: 3.016e1

FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.922e1

VQSLOD
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MQRankSum
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SIO_000300: -2.08e-1

ReadPosRankSum
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ClippingRankSum
type: SiteQuality
SIO_000300: -2.95e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.867771857114664e-5
allele num: 10134
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8474
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65942
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11488
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16452
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.66e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.71e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.23e-1

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.378806e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

FS
type: SiteQuality
SIO_000300: 9.379999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.94e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.847e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.548624799102405e-5
allele num: 65954
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16454
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10138
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.987e1

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.379596e6

BaseQRankSum
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SIO_000300: -2.128e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.54e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.63e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 4

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8474
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 2
allele frequency: 1.972386587771203e-4
allele num: 10140
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6592
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.515840533575868e-5
allele num: 65970
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.123595505617978e-3
allele num: 890
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.58e0

BaseQRankSum
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MQRankSum
type: SiteQuality
SIO_000300: 5.4e-2

MQ
type: SiteQuality
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DP
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FS
type: SiteQuality
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QD
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 5.47e-1

ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.51285930408472e-5
allele num: 66100
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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South Asian
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allele frequency: 0.0e0
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African
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East Asian
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allele count: 0
allele frequency: 0.0e0
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MQ
type: SiteQuality
SIO_000300: 5.945e1

DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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QD
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ReadPosRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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European (Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66112
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East Asian
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South Asian
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Latino
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FS
type: SiteQuality
SIO_000300: 1.87763e2

ClippingRankSum
type: SiteQuality
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VQSLOD
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QD
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DP
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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MQ
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Other
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South Asian
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African
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East Asian
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European (Non-Finnish)
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VQSLOD
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FS
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BaseQRankSum
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DP
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ReadPosRankSum
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QD
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ClippingRankSum
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MQ
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MQRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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Other
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South Asian
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East Asian
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European (Non-Finnish)
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InbreedingCoeff
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MQ
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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VQSLOD
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FS
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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Other
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East Asian
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South Asian
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Latino
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MQRankSum
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BaseQRankSum
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FS
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MQ
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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African
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European (Non-Finnish)
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European (Finnish)
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East Asian
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InbreedingCoeff
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DP
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ReadPosRankSum
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FS
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MQRankSum
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VQSLOD
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BaseQRankSum
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MQ
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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South Asian
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East Asian
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Latino
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African
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European (Finnish)
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DP
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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FS
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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QD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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Latino
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Other
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East Asian
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South Asian
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FS
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QD
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MQ
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ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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DP
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InbreedingCoeff
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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European (Finnish)
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European (Non-Finnish)
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South Asian
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QD
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ReadPosRankSum
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VQSLOD
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DP
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MQRankSum
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FS
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MQ
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InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
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Latino
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European (Non-Finnish)
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African
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South Asian
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European (Finnish)
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InbreedingCoeff
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FS
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QD
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DP
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MQ
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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European (Finnish)
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505842669557885e-5
allele num: 66408
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10296
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.405055e6

FS
type: SiteQuality
SIO_000300: 5.28e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.762e0

VQSLOD
type: SiteQuality
SIO_000300: 3.16e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.919999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.75e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.4e-1

QD
type: SiteQuality
SIO_000300: 1.178e1

MQ
type: SiteQuality
SIO_000300: 5.958e1

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2122
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2430
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24258
bin: 9.75e1
variant carriers: 79

GenotypeQuality
all individuals: 3806
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15109
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 18
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3471
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3785
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5259
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 73
allele frequency: 8.512126865671642e-3
allele num: 8576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.011685339115769e-5
allele num: 66408
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10296
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.424536307431204e-4
allele num: 16498
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.762e0

FS
type: SiteQuality
SIO_000300: 5.28e-1

DP
type: SiteQuality
SIO_000300: 2.405055e6

VQSLOD
type: SiteQuality
SIO_000300: 3.16e0

MQ
type: SiteQuality
SIO_000300: 5.958e1

QD
type: SiteQuality
SIO_000300: 1.178e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.75e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.4e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.919999999999999e-1

GenotypeQuality
all individuals: 282
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2125
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24217
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2430
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3478
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5268
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3795
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15136
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10298
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505888022166672e-5
allele num: 66406
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.51e-1

FS
type: SiteQuality
SIO_000300: 1.12e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.71e-1

MQ
type: SiteQuality
SIO_000300: 5.957e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

DP
type: SiteQuality
SIO_000300: 2.389158e6

MQRankSum
type: SiteQuality
SIO_000300: 1.07e0

QD
type: SiteQuality
SIO_000300: 1.191e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.1e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.12e-1

GenotypeQuality
all individuals: 3811
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15162
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2428
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2125
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3477
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24217
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3798
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5269
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66426
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06060606060606e-5
allele num: 16500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10308
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.389441e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 8.33e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.706e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.7e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.416e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.05e0

MQRankSum
type: SiteQuality
SIO_000300: 6.24e-1

GenotypeQuality
all individuals: 3797
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2125
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3811
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24216
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5270
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2428
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3477
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10314
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66436
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.64902266043937e-5
allele num: 11562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.389705e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.215e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.78e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.426e0

MQRankSum
type: SiteQuality
SIO_000300: 2.66e-1

MQ
type: SiteQuality
SIO_000300: 5.974e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 9.65e-1

FS
type: SiteQuality
SIO_000300: 2.737e0

QD
type: SiteQuality
SIO_000300: 1.319e1

GenotypeQuality
all individuals: 23
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3811
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24217
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3797
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2125
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5269
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15120
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10318
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505298651252408e-5
allele num: 66432
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.953e1

VQSLOD
type: SiteQuality
SIO_000300: -7.21e-2

FS
type: SiteQuality
SIO_000300: 6.208e0

QD
type: SiteQuality
SIO_000300: 9.41e0

DP
type: SiteQuality
SIO_000300: 2.389669e6

MQRankSum
type: SiteQuality
SIO_000300: 3.15e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.59e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.16e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.886e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
all individuals: 3799
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3812
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3477
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2125
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15098
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2430
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.64902266043937e-5
allele num: 11562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66452
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10320
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

DP
type: SiteQuality
SIO_000300: 2.389727e6

QD
type: SiteQuality
SIO_000300: 1.097e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.35e0

MQ
type: SiteQuality
SIO_000300: 5.989e1

MQRankSum
type: SiteQuality
SIO_000300: 1.8e-1

FS
type: SiteQuality
SIO_000300: 2.382e0

VQSLOD
type: SiteQuality
SIO_000300: 3.32e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.186e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.296e0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2432
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24216
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 35
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3798
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5268
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3812
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3477
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2124
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504709741490866e-5
allele num: 66458
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.680542110358181e-5
allele num: 10330
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211680600993578e-4
allele num: 16506
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.254e1

DP
type: SiteQuality
SIO_000300: 2.390356e6

MQRankSum
type: SiteQuality
SIO_000300: 4.76e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.53e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.21e0

MQ
type: SiteQuality
SIO_000300: 5.964e1

FS
type: SiteQuality
SIO_000300: 5.25e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.45e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 3.17e-1

GenotypeQuality
all individuals: 3798
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15119
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5262
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2125
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3477
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3812
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24216
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10332
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504800312998465e-5
allele num: 66454
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.377e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.389628e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.51e-1

QD
type: SiteQuality
SIO_000300: 9.869999999999999e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.06e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.5e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.54e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.55e-1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

European (Non-Finnish)
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allele count: 2
allele frequency: 3.008876184744998e-5
allele num: 66470
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10342
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.390047e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.73e-1

FS
type: SiteQuality
SIO_000300: 1.761e0

VQSLOD
type: SiteQuality
SIO_000300: 2.54e0

MQ
type: SiteQuality
SIO_000300: 5.971e1

MQRankSum
type: SiteQuality
SIO_000300: 3.55e-1

QD
type: SiteQuality
SIO_000300: 1.209e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.44e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.302e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10342
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66464
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 7
allele frequency: 8.133860097606321e-4
allele num: 8606
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.23e-1

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.763e0

QD
type: SiteQuality
SIO_000300: 1.403e1

DP
type: SiteQuality
SIO_000300: 2.391193e6

MQRankSum
type: SiteQuality
SIO_000300: 8.43e-1

BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.979e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 249
bin: 2.25e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10342
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.323420074349442e-4
allele num: 8608
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504664459825459e-5
allele num: 66460
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.187e1

MQRankSum
type: SiteQuality
SIO_000300: -4.65e-1

FS
type: SiteQuality
SIO_000300: 5.39e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

DP
type: SiteQuality
SIO_000300: 2.390668e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -2.38e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.89e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.56e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.56e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 6

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.161710037174721e-4
allele num: 8608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10346
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.521964135275003e-5
allele num: 66472
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.25e-1

QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.391202e6

FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.952e1

BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQRankSum
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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