17-35944729-GA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35944729
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 35944728
    reference: chr 17
allele count: 1
allele frequency: 8.290911502810618e-6
allele num: 120614
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000378189
  gene symbol: SYNRG
  hgvsc: ENST00000378189.1:n.1097+26delT
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000343610
  ensembl transcript: ENST00000339208
  gene symbol: SYNRG
  hgvsc: ENST00000339208.6:c.589+26delT
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000005279
  ensembl transcript: ENST00000346661
  gene symbol: SYNRG
  hgvsc: ENST00000346661.4:c.589+26delT
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000315722
  ensembl transcript: ENST00000345615
  gene symbol: SYNRG
  hgvsc: ENST00000345615.4:c.589+26delT
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466741
  ensembl transcript: ENST00000585472
  gene symbol: SYNRG
  hgvsc: ENST00000585472.1:c.586+26delT
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000394379
  gene symbol: SYNRG
  hgvsc: ENST00000394379.3:n.672+26delT
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000467193
  ensembl transcript: ENST00000427923
  gene symbol: SYNRG
  hgvsc: ENST00000427923.1:c.227delT
  hgvsp: ENSP00000467193.1:p.Leu77PhefsTer21
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000468371
  ensembl transcript: ENST00000591288
  gene symbol: SYNRG
  hgvsc: ENST00000591288.1:c.589+26delT
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000377903
  ensembl transcript: ENST00000394378
  gene symbol: SYNRG
  hgvsc: ENST00000394378.2:c.589+26delT
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000424893
  ensembl transcript: ENST00000502449
  gene symbol: SYNRG
  hgvsc: ENST00000502449.2:c.589+26delT
  variant of: http://identifiers.org/hgnc/557
canonical: false
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10278
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43856
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3101
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2292
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Leu77PhefsTer21
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: GA
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

17-35944738-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35944738
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 35944738
    reference: chr 17
allele count: 2
allele frequency: 1.651936896010573e-5
allele num: 121070
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000467193
  ensembl transcript: ENST00000427923
  gene symbol: SYNRG
  hgvsc: ENST00000427923.1:c.219T>C
  hgvsp: ENSP00000467193.1:p.Tyr74His
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000315722
  ensembl transcript: ENST00000345615
  gene symbol: SYNRG
  hgvsc: ENST00000345615.4:c.589+18T>C
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466741
  ensembl transcript: ENST00000585472
  gene symbol: SYNRG
  hgvsc: ENST00000585472.1:c.586+18T>C
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000468371
  ensembl transcript: ENST00000591288
  gene symbol: SYNRG
  hgvsc: ENST00000591288.1:c.589+18T>C
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000343610
  ensembl transcript: ENST00000339208
  gene symbol: SYNRG
  hgvsc: ENST00000339208.6:c.589+18T>C
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000424893
  ensembl transcript: ENST00000502449
  gene symbol: SYNRG
  hgvsc: ENST00000502449.2:c.589+18T>C
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000377903
  ensembl transcript: ENST00000394378
  gene symbol: SYNRG
  hgvsc: ENST00000394378.2:c.589+18T>C
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000394379
  gene symbol: SYNRG
  hgvsc: ENST00000394379.3:n.672+18T>C
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000378189
  gene symbol: SYNRG
  hgvsc: ENST00000378189.1:n.1097+18T>C
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000005279
  ensembl transcript: ENST00000346661
  gene symbol: SYNRG
  hgvsc: ENST00000346661.4:c.589+18T>C
  variant of: http://identifiers.org/hgnc/557
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3125
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10413
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44022
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48957
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Tyr74His
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: South Asian
population: Latino
population: European (Finnish)
reference allele: A
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD

17-35944742-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35944742
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 35944742
    reference: chr 17
allele count: 1
allele frequency: 8.253276550790664e-6
allele num: 121164
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000424893
  ensembl transcript: ENST00000502449
  gene symbol: SYNRG
  hgvsc: ENST00000502449.2:c.589+14G>C
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000343610
  ensembl transcript: ENST00000339208
  gene symbol: SYNRG
  hgvsc: ENST00000339208.6:c.589+14G>C
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000468371
  ensembl transcript: ENST00000591288
  gene symbol: SYNRG
  hgvsc: ENST00000591288.1:c.589+14G>C
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000005279
  ensembl transcript: ENST00000346661
  gene symbol: SYNRG
  hgvsc: ENST00000346661.4:c.589+14G>C
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000377903
  ensembl transcript: ENST00000394378
  gene symbol: SYNRG
  hgvsc: ENST00000394378.2:c.589+14G>C
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000467193
  ensembl transcript: ENST00000427923
  gene symbol: SYNRG
  hgvsc: ENST00000427923.1:c.215G>C
  hgvsp: ENSP00000467193.1:p.Arg72Ser
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000394379
  gene symbol: SYNRG
  hgvsc: ENST00000394379.3:n.672+14G>C
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000315722
  ensembl transcript: ENST00000345615
  gene symbol: SYNRG
  hgvsc: ENST00000345615.4:c.589+14G>C
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000378189
  gene symbol: SYNRG
  hgvsc: ENST00000378189.1:n.1097+14G>C
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466741
  ensembl transcript: ENST00000585472
  gene symbol: SYNRG
  hgvsc: ENST00000585472.1:c.586+14G>C
  variant of: http://identifiers.org/hgnc/557
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3134
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10475
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44028
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5057
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg72Ser
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum

17-35944743-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35944743
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 35944743
    reference: chr 17
allele count: 2
allele frequency: 1.650110557407346e-5
allele num: 121204
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000394379
  gene symbol: SYNRG
  hgvsc: ENST00000394379.3:n.672+13G>C
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000315722
  ensembl transcript: ENST00000345615
  gene symbol: SYNRG
  hgvsc: ENST00000345615.4:c.589+13G>C
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000467193
  ensembl transcript: ENST00000427923
  gene symbol: SYNRG
  hgvsc: ENST00000427923.1:c.214G>C
  hgvsp: ENSP00000467193.1:p.Arg72Thr
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000343610
  ensembl transcript: ENST00000339208
  gene symbol: SYNRG
  hgvsc: ENST00000339208.6:c.589+13G>C
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000005279
  ensembl transcript: ENST00000346661
  gene symbol: SYNRG
  hgvsc: ENST00000346661.4:c.589+13G>C
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000377903
  ensembl transcript: ENST00000394378
  gene symbol: SYNRG
  hgvsc: ENST00000394378.2:c.589+13G>C
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000378189
  gene symbol: SYNRG
  hgvsc: ENST00000378189.1:n.1097+13G>C
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000424893
  ensembl transcript: ENST00000502449
  gene symbol: SYNRG
  hgvsc: ENST00000502449.2:c.589+13G>C
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000468371
  ensembl transcript: ENST00000591288
  gene symbol: SYNRG
  hgvsc: ENST00000591288.1:c.589+13G>C
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466741
  ensembl transcript: ENST00000585472
  gene symbol: SYNRG
  hgvsc: ENST00000585472.1:c.586+13G>C
  variant of: http://identifiers.org/hgnc/557
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44012
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10519
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3136
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg72Thr
num of homozygotes: 1
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQ
site quality: VQSLOD

17-35944746-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35944746
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 35944746
    reference: chr 17
allele count: 251
allele frequency: 2.069727554588033e-3
allele num: 121272
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000468371
  ensembl transcript: ENST00000591288
  gene symbol: SYNRG
  hgvsc: ENST00000591288.1:c.589+10A>G
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000315722
  ensembl transcript: ENST00000345615
  gene symbol: SYNRG
  hgvsc: ENST00000345615.4:c.589+10A>G
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000005279
  ensembl transcript: ENST00000346661
  gene symbol: SYNRG
  hgvsc: ENST00000346661.4:c.589+10A>G
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000394379
  gene symbol: SYNRG
  hgvsc: ENST00000394379.3:n.672+10A>G
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000467193
  ensembl transcript: ENST00000427923
  gene symbol: SYNRG
  hgvsc: ENST00000427923.1:c.211A>G
  hgvsp: ENSP00000467193.1:p.Lys71Arg
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000343610
  ensembl transcript: ENST00000339208
  gene symbol: SYNRG
  hgvsc: ENST00000339208.6:c.589+10A>G
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000424893
  ensembl transcript: ENST00000502449
  gene symbol: SYNRG
  hgvsc: ENST00000502449.2:c.589+10A>G
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000378189
  gene symbol: SYNRG
  hgvsc: ENST00000378189.1:n.1097+10A>G
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000377903
  ensembl transcript: ENST00000394378
  gene symbol: SYNRG
  hgvsc: ENST00000394378.2:c.589+10A>G
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466741
  ensembl transcript: ENST00000585472
  gene symbol: SYNRG
  hgvsc: ENST00000585472.1:c.586+10A>G
  variant of: http://identifiers.org/hgnc/557
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3111
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 43842
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 9.75e1
  variant carriers: 138
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 10541
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 752
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1309
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Lys71Arg
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: QD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

17-35944758-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35944758
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 35944758
    reference: chr 17
allele count: 3
allele frequency: 2.472636159831201e-5
allele num: 121328
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000378189
  gene symbol: SYNRG
  hgvsc: ENST00000378189.1:n.1095C>G
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000005279
  ensembl transcript: ENST00000346661
  gene symbol: SYNRG
  hgvsc: ENST00000346661.4:c.587C>G
  hgvsp: ENSP00000005279.4:p.Pro196Arg
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000424893
  ensembl transcript: ENST00000502449
  gene symbol: SYNRG
  hgvsc: ENST00000502449.2:c.587C>G
  hgvsp: ENSP00000424893.2:p.Pro196Arg
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000468371
  ensembl transcript: ENST00000591288
  gene symbol: SYNRG
  hgvsc: ENST00000591288.1:c.587C>G
  hgvsp: ENSP00000468371.1:p.Pro196Arg
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466741
  ensembl transcript: ENST00000585472
  gene symbol: SYNRG
  hgvsc: ENST00000585472.1:c.584C>G
  hgvsp: ENSP00000466741.1:p.Pro195Arg
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000467193
  ensembl transcript: ENST00000427923
  gene symbol: SYNRG
  hgvsc: ENST00000427923.1:c.199C>G
  hgvsp: ENSP00000467193.1:p.Pro67Arg
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000377903
  ensembl transcript: ENST00000394378
  gene symbol: SYNRG
  hgvsc: ENST00000394378.2:c.587C>G
  hgvsp: ENSP00000377903.2:p.Pro196Arg
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000394379
  gene symbol: SYNRG
  hgvsc: ENST00000394379.3:n.670C>G
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000343610
  ensembl transcript: ENST00000339208
  gene symbol: SYNRG
  hgvsc: ENST00000339208.6:c.587C>G
  hgvsp: ENSP00000343610.6:p.Pro196Arg
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000315722
  ensembl transcript: ENST00000345615
  gene symbol: SYNRG
  hgvsc: ENST00000345615.4:c.587C>G
  hgvsp: ENSP00000315722.5:p.Pro196Arg
  variant of: http://identifiers.org/hgnc/557
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3203
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43861
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10662
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro196Arg
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ClippingRankSum

17-35944759-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35944759
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 35944759
    reference: chr 17
allele count: 1
allele frequency: 8.241848811525402e-6
allele num: 121332
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000468371
  ensembl transcript: ENST00000591288
  gene symbol: SYNRG
  hgvsc: ENST00000591288.1:c.586C>T
  hgvsp: ENSP00000468371.1:p.Pro196Ser
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000394379
  gene symbol: SYNRG
  hgvsc: ENST00000394379.3:n.669C>T
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000005279
  ensembl transcript: ENST00000346661
  gene symbol: SYNRG
  hgvsc: ENST00000346661.4:c.586C>T
  hgvsp: ENSP00000005279.4:p.Pro196Ser
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000424893
  ensembl transcript: ENST00000502449
  gene symbol: SYNRG
  hgvsc: ENST00000502449.2:c.586C>T
  hgvsp: ENSP00000424893.2:p.Pro196Ser
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000467193
  ensembl transcript: ENST00000427923
  gene symbol: SYNRG
  hgvsc: ENST00000427923.1:c.198C>T
  hgvsp: ENSP00000467193.1:p.Pro67Ser
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466741
  ensembl transcript: ENST00000585472
  gene symbol: SYNRG
  hgvsc: ENST00000585472.1:c.583C>T
  hgvsp: ENSP00000466741.1:p.Pro195Ser
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000377903
  ensembl transcript: ENST00000394378
  gene symbol: SYNRG
  hgvsc: ENST00000394378.2:c.586C>T
  hgvsp: ENSP00000377903.2:p.Pro196Ser
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000343610
  ensembl transcript: ENST00000339208
  gene symbol: SYNRG
  hgvsc: ENST00000339208.6:c.586C>T
  hgvsp: ENSP00000343610.6:p.Pro196Ser
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000378189
  gene symbol: SYNRG
  hgvsc: ENST00000378189.1:n.1094C>T
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000315722
  ensembl transcript: ENST00000345615
  gene symbol: SYNRG
  hgvsc: ENST00000345615.4:c.586C>T
  hgvsp: ENSP00000315722.5:p.Pro196Ser
  variant of: http://identifiers.org/hgnc/557
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10663
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3203
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43863
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49229
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Pro196Ser
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD

17-35944768-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35944768
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 35944768
    reference: chr 17
allele count: 1
allele frequency: 8.239539904091756e-6
allele num: 121366
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000343610
  ensembl transcript: ENST00000339208
  gene symbol: SYNRG
  hgvsc: ENST00000339208.6:c.577C>T
  hgvsp: ENSP00000343610.6:p.Pro193Ser
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000424893
  ensembl transcript: ENST00000502449
  gene symbol: SYNRG
  hgvsc: ENST00000502449.2:c.577C>T
  hgvsp: ENSP00000424893.2:p.Pro193Ser
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466741
  ensembl transcript: ENST00000585472
  gene symbol: SYNRG
  hgvsc: ENST00000585472.1:c.574C>T
  hgvsp: ENSP00000466741.1:p.Pro192Ser
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000468371
  ensembl transcript: ENST00000591288
  gene symbol: SYNRG
  hgvsc: ENST00000591288.1:c.577C>T
  hgvsp: ENSP00000468371.1:p.Pro193Ser
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000394379
  gene symbol: SYNRG
  hgvsc: ENST00000394379.3:n.660C>T
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000005279
  ensembl transcript: ENST00000346661
  gene symbol: SYNRG
  hgvsc: ENST00000346661.4:c.577C>T
  hgvsp: ENSP00000005279.4:p.Pro193Ser
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000377903
  ensembl transcript: ENST00000394378
  gene symbol: SYNRG
  hgvsc: ENST00000394378.2:c.577C>T
  hgvsp: ENSP00000377903.2:p.Pro193Ser
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000467193
  ensembl transcript: ENST00000427923
  gene symbol: SYNRG
  hgvsc: ENST00000427923.1:c.189C>T
  hgvsp: ENSP00000467193.1:p.Pro64Ser
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000378189
  gene symbol: SYNRG
  hgvsc: ENST00000378189.1:n.1085C>T
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000315722
  ensembl transcript: ENST00000345615
  gene symbol: SYNRG
  hgvsc: ENST00000345615.4:c.577C>T
  hgvsp: ENSP00000315722.5:p.Pro193Ser
  variant of: http://identifiers.org/hgnc/557
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43882
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3204
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10671
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2305
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1287
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Pro193Ser
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: DP
site quality: MQRankSum

17-35944772-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35944772
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 35944772
    reference: chr 17
allele count: 7
allele frequency: 5.767582888405511e-5
allele num: 121368
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000315722
  ensembl transcript: ENST00000345615
  gene symbol: SYNRG
  hgvsc: ENST00000345615.4:c.573G>A
  hgvsp: ENST00000345615.4:c.573G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000467193
  ensembl transcript: ENST00000427923
  gene symbol: SYNRG
  hgvsc: ENST00000427923.1:c.185G>A
  hgvsp: ENST00000427923.1:c.185G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000394379
  gene symbol: SYNRG
  hgvsc: ENST00000394379.3:n.656G>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000424893
  ensembl transcript: ENST00000502449
  gene symbol: SYNRG
  hgvsc: ENST00000502449.2:c.573G>A
  hgvsp: ENST00000502449.2:c.573G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000005279
  ensembl transcript: ENST00000346661
  gene symbol: SYNRG
  hgvsc: ENST00000346661.4:c.573G>A
  hgvsp: ENST00000346661.4:c.573G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000377903
  ensembl transcript: ENST00000394378
  gene symbol: SYNRG
  hgvsc: ENST00000394378.2:c.573G>A
  hgvsp: ENST00000394378.2:c.573G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000343610
  ensembl transcript: ENST00000339208
  gene symbol: SYNRG
  hgvsc: ENST00000339208.6:c.573G>A
  hgvsp: ENST00000339208.6:c.573G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000468371
  ensembl transcript: ENST00000591288
  gene symbol: SYNRG
  hgvsc: ENST00000591288.1:c.573G>A
  hgvsp: ENST00000591288.1:c.573G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466741
  ensembl transcript: ENST00000585472
  gene symbol: SYNRG
  hgvsc: ENST00000585472.1:c.570G>A
  hgvsp: ENST00000585472.1:c.570G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000378189
  gene symbol: SYNRG
  hgvsc: ENST00000378189.1:n.1081G>A
  variant of: http://identifiers.org/hgnc/557
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10672
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3203
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43872
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49250
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser191Ser
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

17-35944773-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35944773
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 35944773
    reference: chr 17
allele count: 3
allele frequency: 2.47161759132627e-5
allele num: 121378
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000467193
  ensembl transcript: ENST00000427923
  gene symbol: SYNRG
  hgvsc: ENST00000427923.1:c.184C>T
  hgvsp: ENSP00000467193.1:p.Ser62Leu
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000424893
  ensembl transcript: ENST00000502449
  gene symbol: SYNRG
  hgvsc: ENST00000502449.2:c.572C>T
  hgvsp: ENSP00000424893.2:p.Ser191Leu
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000468371
  ensembl transcript: ENST00000591288
  gene symbol: SYNRG
  hgvsc: ENST00000591288.1:c.572C>T
  hgvsp: ENSP00000468371.1:p.Ser191Leu
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000315722
  ensembl transcript: ENST00000345615
  gene symbol: SYNRG
  hgvsc: ENST00000345615.4:c.572C>T
  hgvsp: ENSP00000315722.5:p.Ser191Leu
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000005279
  ensembl transcript: ENST00000346661
  gene symbol: SYNRG
  hgvsc: ENST00000346661.4:c.572C>T
  hgvsp: ENSP00000005279.4:p.Ser191Leu
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000378189
  gene symbol: SYNRG
  hgvsc: ENST00000378189.1:n.1080C>T
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466741
  ensembl transcript: ENST00000585472
  gene symbol: SYNRG
  hgvsc: ENST00000585472.1:c.569C>T
  hgvsp: ENSP00000466741.1:p.Ser190Leu
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000343610
  ensembl transcript: ENST00000339208
  gene symbol: SYNRG
  hgvsc: ENST00000339208.6:c.572C>T
  hgvsp: ENSP00000343610.6:p.Ser191Leu
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000377903
  ensembl transcript: ENST00000394378
  gene symbol: SYNRG
  hgvsc: ENST00000394378.2:c.572C>T
  hgvsp: ENSP00000377903.2:p.Ser191Leu
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000394379
  gene symbol: SYNRG
  hgvsc: ENST00000394379.3:n.655C>T
  variant of: http://identifiers.org/hgnc/557
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43879
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10676
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3203
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1312
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser191Leu
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum

17-35944779-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35944779
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 35944779
    reference: chr 17
allele count: 6
allele frequency: 4.943479550472926e-5
allele num: 121372
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466741
  ensembl transcript: ENST00000585472
  gene symbol: SYNRG
  hgvsc: ENST00000585472.1:c.563C>T
  hgvsp: ENSP00000466741.1:p.Pro188Leu
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000378189
  gene symbol: SYNRG
  hgvsc: ENST00000378189.1:n.1074C>T
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000377903
  ensembl transcript: ENST00000394378
  gene symbol: SYNRG
  hgvsc: ENST00000394378.2:c.566C>T
  hgvsp: ENSP00000377903.2:p.Pro189Leu
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000005279
  ensembl transcript: ENST00000346661
  gene symbol: SYNRG
  hgvsc: ENST00000346661.4:c.566C>T
  hgvsp: ENSP00000005279.4:p.Pro189Leu
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000394379
  gene symbol: SYNRG
  hgvsc: ENST00000394379.3:n.649C>T
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000467193
  ensembl transcript: ENST00000427923
  gene symbol: SYNRG
  hgvsc: ENST00000427923.1:c.178C>T
  hgvsp: ENSP00000467193.1:p.Pro60Leu
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000343610
  ensembl transcript: ENST00000339208
  gene symbol: SYNRG
  hgvsc: ENST00000339208.6:c.566C>T
  hgvsp: ENSP00000343610.6:p.Pro189Leu
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000468371
  ensembl transcript: ENST00000591288
  gene symbol: SYNRG
  hgvsc: ENST00000591288.1:c.566C>T
  hgvsp: ENSP00000468371.1:p.Pro189Leu
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000315722
  ensembl transcript: ENST00000345615
  gene symbol: SYNRG
  hgvsc: ENST00000345615.4:c.566C>T
  hgvsp: ENSP00000315722.5:p.Pro189Leu
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000424893
  ensembl transcript: ENST00000502449
  gene symbol: SYNRG
  hgvsc: ENST00000502449.2:c.566C>T
  hgvsp: ENSP00000424893.2:p.Pro189Leu
  variant of: http://identifiers.org/hgnc/557
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 43877
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10675
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3202
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1280
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Pro189Leu
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: Other
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/17-35944781-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35944781
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 35944781
    reference: chr 17
allele count: 1
allele frequency: 8.238861059847087e-6
allele num: 121376
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000424893
  ensembl transcript: ENST00000502449
  gene symbol: SYNRG
  hgvsc: ENST00000502449.2:c.564T>G
  hgvsp: ENST00000502449.2:c.564T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466741
  ensembl transcript: ENST00000585472
  gene symbol: SYNRG
  hgvsc: ENST00000585472.1:c.561T>G
  hgvsp: ENST00000585472.1:c.561T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000315722
  ensembl transcript: ENST00000345615
  gene symbol: SYNRG
  hgvsc: ENST00000345615.4:c.564T>G
  hgvsp: ENST00000345615.4:c.564T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000468371
  ensembl transcript: ENST00000591288
  gene symbol: SYNRG
  hgvsc: ENST00000591288.1:c.564T>G
  hgvsp: ENST00000591288.1:c.564T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000467193
  ensembl transcript: ENST00000427923
  gene symbol: SYNRG
  hgvsc: ENST00000427923.1:c.176T>G
  hgvsp: ENST00000427923.1:c.176T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000343610
  ensembl transcript: ENST00000339208
  gene symbol: SYNRG
  hgvsc: ENST00000339208.6:c.564T>G
  hgvsp: ENST00000339208.6:c.564T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000378189
  gene symbol: SYNRG
  hgvsc: ENST00000378189.1:n.1072T>G
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000377903
  ensembl transcript: ENST00000394378
  gene symbol: SYNRG
  hgvsc: ENST00000394378.2:c.564T>G
  hgvsp: ENST00000394378.2:c.564T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000005279
  ensembl transcript: ENST00000346661
  gene symbol: SYNRG
  hgvsc: ENST00000346661.4:c.564T>G
  hgvsp: ENST00000346661.4:c.564T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000394379
  gene symbol: SYNRG
  hgvsc: ENST00000394379.3:n.647T>G
  variant of: http://identifiers.org/hgnc/557
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3201
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10674
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43885
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 760
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Thr188Thr
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

17-35944785-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35944785
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 35944785
    reference: chr 17
allele count: 2
allele frequency: 1.647799363949445e-5
allele num: 121374
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000424893
  ensembl transcript: ENST00000502449
  gene symbol: SYNRG
  hgvsc: ENST00000502449.2:c.560C>T
  hgvsp: ENSP00000424893.2:p.Pro187Leu
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000468371
  ensembl transcript: ENST00000591288
  gene symbol: SYNRG
  hgvsc: ENST00000591288.1:c.560C>T
  hgvsp: ENSP00000468371.1:p.Pro187Leu
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000467193
  ensembl transcript: ENST00000427923
  gene symbol: SYNRG
  hgvsc: ENST00000427923.1:c.172C>T
  hgvsp: ENSP00000467193.1:p.Pro58Leu
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000343610
  ensembl transcript: ENST00000339208
  gene symbol: SYNRG
  hgvsc: ENST00000339208.6:c.560C>T
  hgvsp: ENSP00000343610.6:p.Pro187Leu
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000378189
  gene symbol: SYNRG
  hgvsc: ENST00000378189.1:n.1068C>T
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000394379
  gene symbol: SYNRG
  hgvsc: ENST00000394379.3:n.643C>T
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000315722
  ensembl transcript: ENST00000345615
  gene symbol: SYNRG
  hgvsc: ENST00000345615.4:c.560C>T
  hgvsp: ENSP00000315722.5:p.Pro187Leu
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000377903
  ensembl transcript: ENST00000394378
  gene symbol: SYNRG
  hgvsc: ENST00000394378.2:c.560C>T
  hgvsp: ENSP00000377903.2:p.Pro187Leu
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466741
  ensembl transcript: ENST00000585472
  gene symbol: SYNRG
  hgvsc: ENST00000585472.1:c.557C>T
  hgvsp: ENSP00000466741.1:p.Pro186Leu
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000005279
  ensembl transcript: ENST00000346661
  gene symbol: SYNRG
  hgvsc: ENST00000346661.4:c.560C>T
  hgvsp: ENSP00000005279.4:p.Pro187Leu
  variant of: http://identifiers.org/hgnc/557
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43882
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3200
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10675
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1277
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Pro187Leu
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: DP

17-35944801-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35944801
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 35944801
    reference: chr 17
allele count: 459
allele frequency: 3.781574914729193e-3
allele num: 121378
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000315722
  ensembl transcript: ENST00000345615
  gene symbol: SYNRG
  hgvsc: ENST00000345615.4:c.544G>A
  hgvsp: ENSP00000315722.5:p.Asp182Asn
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000467193
  ensembl transcript: ENST00000427923
  gene symbol: SYNRG
  hgvsc: ENST00000427923.1:c.156G>A
  hgvsp: ENSP00000467193.1:p.Asp53Asn
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000468371
  ensembl transcript: ENST00000591288
  gene symbol: SYNRG
  hgvsc: ENST00000591288.1:c.544G>A
  hgvsp: ENSP00000468371.1:p.Asp182Asn
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000378189
  gene symbol: SYNRG
  hgvsc: ENST00000378189.1:n.1052G>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000005279
  ensembl transcript: ENST00000346661
  gene symbol: SYNRG
  hgvsc: ENST00000346661.4:c.544G>A
  hgvsp: ENSP00000005279.4:p.Asp182Asn
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000377903
  ensembl transcript: ENST00000394378
  gene symbol: SYNRG
  hgvsc: ENST00000394378.2:c.544G>A
  hgvsp: ENSP00000377903.2:p.Asp182Asn
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466741
  ensembl transcript: ENST00000585472
  gene symbol: SYNRG
  hgvsc: ENST00000585472.1:c.541G>A
  hgvsp: ENSP00000466741.1:p.Asp181Asn
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000343610
  ensembl transcript: ENST00000339208
  gene symbol: SYNRG
  hgvsc: ENST00000339208.6:c.544G>A
  hgvsp: ENSP00000343610.6:p.Asp182Asn
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000424893
  ensembl transcript: ENST00000502449
  gene symbol: SYNRG
  hgvsc: ENST00000502449.2:c.544G>A
  hgvsp: ENSP00000424893.2:p.Asp182Asn
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000394379
  gene symbol: SYNRG
  hgvsc: ENST00000394379.3:n.627G>A
  variant of: http://identifiers.org/hgnc/557
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 43580
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10610
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3149
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 9.75e1
  variant carriers: 385
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Asp182Asn
num of homozygotes: 1
population: African
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD

17-35944811-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35944811
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 35944811
    reference: chr 17
allele count: 5
allele frequency: 4.119905736556747e-5
allele num: 121362
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000378189
  gene symbol: SYNRG
  hgvsc: ENST00000378189.1:n.1042G>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000377903
  ensembl transcript: ENST00000394378
  gene symbol: SYNRG
  hgvsc: ENST00000394378.2:c.534G>A
  hgvsp: ENST00000394378.2:c.534G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000315722
  ensembl transcript: ENST00000345615
  gene symbol: SYNRG
  hgvsc: ENST00000345615.4:c.534G>A
  hgvsp: ENST00000345615.4:c.534G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000468371
  ensembl transcript: ENST00000591288
  gene symbol: SYNRG
  hgvsc: ENST00000591288.1:c.534G>A
  hgvsp: ENST00000591288.1:c.534G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000005279
  ensembl transcript: ENST00000346661
  gene symbol: SYNRG
  hgvsc: ENST00000346661.4:c.534G>A
  hgvsp: ENST00000346661.4:c.534G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000343610
  ensembl transcript: ENST00000339208
  gene symbol: SYNRG
  hgvsc: ENST00000339208.6:c.534G>A
  hgvsp: ENST00000339208.6:c.534G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466741
  ensembl transcript: ENST00000585472
  gene symbol: SYNRG
  hgvsc: ENST00000585472.1:c.531G>A
  hgvsp: ENST00000585472.1:c.531G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000467193
  ensembl transcript: ENST00000427923
  gene symbol: SYNRG
  hgvsc: ENST00000427923.1:c.146G>A
  hgvsp: ENST00000427923.1:c.146G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000424893
  ensembl transcript: ENST00000502449
  gene symbol: SYNRG
  hgvsc: ENST00000502449.2:c.534G>A
  hgvsp: ENST00000502449.2:c.534G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000394379
  gene symbol: SYNRG
  hgvsc: ENST00000394379.3:n.617G>A
  variant of: http://identifiers.org/hgnc/557
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43604
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3271
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10770
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gly178Gly
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP

17-35944837-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35944837
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 35944837
    reference: chr 17
allele count: 93
allele frequency: 7.677955187160477e-4
allele num: 121126
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000467193
  ensembl transcript: ENST00000427923
  gene symbol: SYNRG
  hgvsc: ENST00000427923.1:c.120G>A
  hgvsp: ENSP00000467193.1:p.Glu41Lys
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466741
  ensembl transcript: ENST00000585472
  gene symbol: SYNRG
  hgvsc: ENST00000585472.1:c.505G>A
  hgvsp: ENSP00000466741.1:p.Glu169Lys
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000394379
  gene symbol: SYNRG
  hgvsc: ENST00000394379.3:n.591G>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000343610
  ensembl transcript: ENST00000339208
  gene symbol: SYNRG
  hgvsc: ENST00000339208.6:c.508G>A
  hgvsp: ENSP00000343610.6:p.Glu170Lys
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000377903
  ensembl transcript: ENST00000394378
  gene symbol: SYNRG
  hgvsc: ENST00000394378.2:c.508G>A
  hgvsp: ENSP00000377903.2:p.Glu170Lys
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000378189
  gene symbol: SYNRG
  hgvsc: ENST00000378189.1:n.1016G>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000424893
  ensembl transcript: ENST00000502449
  gene symbol: SYNRG
  hgvsc: ENST00000502449.2:c.508G>A
  hgvsp: ENSP00000424893.2:p.Glu170Lys
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000468371
  ensembl transcript: ENST00000591288
  gene symbol: SYNRG
  hgvsc: ENST00000591288.1:c.508G>A
  hgvsp: ENSP00000468371.1:p.Glu170Lys
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000315722
  ensembl transcript: ENST00000345615
  gene symbol: SYNRG
  hgvsc: ENST00000345615.4:c.508G>A
  hgvsp: ENSP00000315722.5:p.Glu170Lys
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000005279
  ensembl transcript: ENST00000346661
  gene symbol: SYNRG
  hgvsc: ENST00000346661.4:c.508G>A
  hgvsp: ENSP00000005279.4:p.Glu170Lys
  variant of: http://identifiers.org/hgnc/557
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10628
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43275
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 9.75e1
  variant carriers: 91
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3250
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 2.25e1
  variant carriers: 2
hgvs: p.Glu170Lys
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

17-35944849-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35944849
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 35944849
    reference: chr 17
allele count: 1
allele frequency: 8.254775387561705e-6
allele num: 121142
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000343610
  ensembl transcript: ENST00000339208
  gene symbol: SYNRG
  hgvsc: ENST00000339208.6:c.496G>C
  hgvsp: ENSP00000343610.6:p.Asp166His
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000315722
  ensembl transcript: ENST00000345615
  gene symbol: SYNRG
  hgvsc: ENST00000345615.4:c.496G>C
  hgvsp: ENSP00000315722.5:p.Asp166His
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000468371
  ensembl transcript: ENST00000591288
  gene symbol: SYNRG
  hgvsc: ENST00000591288.1:c.496G>C
  hgvsp: ENSP00000468371.1:p.Asp166His
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000377903
  ensembl transcript: ENST00000394378
  gene symbol: SYNRG
  hgvsc: ENST00000394378.2:c.496G>C
  hgvsp: ENSP00000377903.2:p.Asp166His
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000378189
  gene symbol: SYNRG
  hgvsc: ENST00000378189.1:n.1004G>C
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000424893
  ensembl transcript: ENST00000502449
  gene symbol: SYNRG
  hgvsc: ENST00000502449.2:c.496G>C
  hgvsp: ENSP00000424893.2:p.Asp166His
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000467193
  ensembl transcript: ENST00000427923
  gene symbol: SYNRG
  hgvsc: ENST00000427923.1:c.108G>C
  hgvsp: ENSP00000467193.1:p.Asp37His
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466741
  ensembl transcript: ENST00000585472
  gene symbol: SYNRG
  hgvsc: ENST00000585472.1:c.493G>C
  hgvsp: ENSP00000466741.1:p.Asp165His
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000005279
  ensembl transcript: ENST00000346661
  gene symbol: SYNRG
  hgvsc: ENST00000346661.4:c.496G>C
  hgvsp: ENSP00000005279.4:p.Asp166His
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000394379
  gene symbol: SYNRG
  hgvsc: ENST00000394379.3:n.579G>C
  variant of: http://identifiers.org/hgnc/557
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43225
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3263
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10616
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 759
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Asp166His
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

17-35944851-C-CCCGGAAAAATCAAGAACTGGT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35944851
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 35944872
    reference: chr 17
allele count: 1
allele frequency: 8.254911672445104e-6
allele num: 121140
alternate allele: CCCGGAAAAATCAAGAACTGGT
annotation: Annotation
  canonical: false
  consequence: protein_altering_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000468371
  ensembl transcript: ENST00000591288
  gene symbol: SYNRG
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: protein_altering_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000424893
  ensembl transcript: ENST00000502449
  gene symbol: SYNRG
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: protein_altering_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000315722
  ensembl transcript: ENST00000345615
  gene symbol: SYNRG
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: protein_altering_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000005279
  ensembl transcript: ENST00000346661
  gene symbol: SYNRG
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000394379
  gene symbol: SYNRG
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: true
  consequence: protein_altering_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000343610
  ensembl transcript: ENST00000339208
  gene symbol: SYNRG
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: protein_altering_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000377903
  ensembl transcript: ENST00000394378
  gene symbol: SYNRG
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: protein_altering_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000467193
  ensembl transcript: ENST00000427923
  gene symbol: SYNRG
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000378189
  gene symbol: SYNRG
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: protein_altering_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466741
  ensembl transcript: ENST00000585472
  gene symbol: SYNRG
  variant of: http://identifiers.org/hgnc/557
canonical: true
consequence: protein altering
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3260
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43230
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10615
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48767
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1317
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1262
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5039
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg165delinsAsnGlnPheLeuIlePheProGly
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: C
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum

17-35944865-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35944865
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 35944865
    reference: chr 17
allele count: 1
allele frequency: 8.265692417053776e-6
allele num: 120982
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000424893
  ensembl transcript: ENST00000502449
  gene symbol: SYNRG
  hgvsc: ENST00000502449.2:c.480A>G
  hgvsp: ENST00000502449.2:c.480A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466741
  ensembl transcript: ENST00000585472
  gene symbol: SYNRG
  hgvsc: ENST00000585472.1:c.477A>G
  hgvsp: ENST00000585472.1:c.477A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000468371
  ensembl transcript: ENST00000591288
  gene symbol: SYNRG
  hgvsc: ENST00000591288.1:c.480A>G
  hgvsp: ENST00000591288.1:c.480A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000343610
  ensembl transcript: ENST00000339208
  gene symbol: SYNRG
  hgvsc: ENST00000339208.6:c.480A>G
  hgvsp: ENST00000339208.6:c.480A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000394379
  gene symbol: SYNRG
  hgvsc: ENST00000394379.3:n.563A>G
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000467193
  ensembl transcript: ENST00000427923
  gene symbol: SYNRG
  hgvsc: ENST00000427923.1:c.92A>G
  hgvsp: ENST00000427923.1:c.92A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000315722
  ensembl transcript: ENST00000345615
  gene symbol: SYNRG
  hgvsc: ENST00000345615.4:c.480A>G
  hgvsp: ENST00000345615.4:c.480A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000005279
  ensembl transcript: ENST00000346661
  gene symbol: SYNRG
  hgvsc: ENST00000346661.4:c.480A>G
  hgvsp: ENST00000346661.4:c.480A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000377903
  ensembl transcript: ENST00000394378
  gene symbol: SYNRG
  hgvsc: ENST00000394378.2:c.480A>G
  hgvsp: ENST00000394378.2:c.480A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000378189
  gene symbol: SYNRG
  hgvsc: ENST00000378189.1:n.988A>G
  variant of: http://identifiers.org/hgnc/557
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10562
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3250
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43017
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.480A>G
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

17-35944872-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35944872
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 35944872
    reference: chr 17
allele count: 1
allele frequency: 8.278968109414843e-6
allele num: 120788
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000005279
  ensembl transcript: ENST00000346661
  gene symbol: SYNRG
  hgvsc: ENST00000346661.4:c.478-5C>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000377903
  ensembl transcript: ENST00000394378
  gene symbol: SYNRG
  hgvsc: ENST00000394378.2:c.478-5C>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466741
  ensembl transcript: ENST00000585472
  gene symbol: SYNRG
  hgvsc: ENST00000585472.1:c.475-5C>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000467193
  ensembl transcript: ENST00000427923
  gene symbol: SYNRG
  hgvsc: ENST00000427923.1:c.90-5C>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000315722
  ensembl transcript: ENST00000345615
  gene symbol: SYNRG
  hgvsc: ENST00000345615.4:c.478-5C>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000394379
  gene symbol: SYNRG
  hgvsc: ENST00000394379.3:n.561-5C>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000378189
  gene symbol: SYNRG
  hgvsc: ENST00000378189.1:n.986-5C>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000424893
  ensembl transcript: ENST00000502449
  gene symbol: SYNRG
  hgvsc: ENST00000502449.2:c.478-5C>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000468371
  ensembl transcript: ENST00000591288
  gene symbol: SYNRG
  hgvsc: ENST00000591288.1:c.478-5C>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000343610
  ensembl transcript: ENST00000339208
  gene symbol: SYNRG
  hgvsc: ENST00000339208.6:c.478-5C>A
  variant of: http://identifiers.org/hgnc/557
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3248
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42732
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10524
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 3.75e1
  variant carriers: 0
hgvs: c.478-5C>A
num of homozygotes: 0
population: Other
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

17-35944889-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35944889
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 35944889
    reference: chr 17
allele count: 3
allele frequency: 2.505177366557552e-5
allele num: 119752
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000343610
  ensembl transcript: ENST00000339208
  gene symbol: SYNRG
  hgvsc: ENST00000339208.6:c.478-22G>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000005279
  ensembl transcript: ENST00000346661
  gene symbol: SYNRG
  hgvsc: ENST00000346661.4:c.478-22G>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000467193
  ensembl transcript: ENST00000427923
  gene symbol: SYNRG
  hgvsc: ENST00000427923.1:c.90-22G>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000468371
  ensembl transcript: ENST00000591288
  gene symbol: SYNRG
  hgvsc: ENST00000591288.1:c.478-22G>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000378189
  gene symbol: SYNRG
  hgvsc: ENST00000378189.1:n.986-22G>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000377903
  ensembl transcript: ENST00000394378
  gene symbol: SYNRG
  hgvsc: ENST00000394378.2:c.478-22G>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466741
  ensembl transcript: ENST00000585472
  gene symbol: SYNRG
  hgvsc: ENST00000585472.1:c.475-22G>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000315722
  ensembl transcript: ENST00000345615
  gene symbol: SYNRG
  hgvsc: ENST00000345615.4:c.478-22G>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000424893
  ensembl transcript: ENST00000502449
  gene symbol: SYNRG
  hgvsc: ENST00000502449.2:c.478-22G>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000394379
  gene symbol: SYNRG
  hgvsc: ENST00000394379.3:n.561-22G>A
  variant of: http://identifiers.org/hgnc/557
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40416
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2147
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10118
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3200
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2536
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 4749
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

17-35944890-G-GT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35944890
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 35944891
    reference: chr 17
allele count: 1
allele frequency: 8.354498061756449e-6
allele num: 119696
alternate allele: GT
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000343610
  ensembl transcript: ENST00000339208
  gene symbol: SYNRG
  hgvsc: ENST00000339208.6:c.478-24dupA
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000467193
  ensembl transcript: ENST00000427923
  gene symbol: SYNRG
  hgvsc: ENST00000427923.1:c.90-24dupA
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000377903
  ensembl transcript: ENST00000394378
  gene symbol: SYNRG
  hgvsc: ENST00000394378.2:c.478-24dupA
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000378189
  gene symbol: SYNRG
  hgvsc: ENST00000378189.1:n.986-24dupA
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000424893
  ensembl transcript: ENST00000502449
  gene symbol: SYNRG
  hgvsc: ENST00000502449.2:c.478-24dupA
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000468371
  ensembl transcript: ENST00000591288
  gene symbol: SYNRG
  hgvsc: ENST00000591288.1:c.478-24dupA
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466741
  ensembl transcript: ENST00000585472
  gene symbol: SYNRG
  hgvsc: ENST00000585472.1:c.475-24dupA
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000315722
  ensembl transcript: ENST00000345615
  gene symbol: SYNRG
  hgvsc: ENST00000345615.4:c.478-24dupA
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000005279
  ensembl transcript: ENST00000346661
  gene symbol: SYNRG
  hgvsc: ENST00000346661.4:c.478-24dupA
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000394379
  gene symbol: SYNRG
  hgvsc: ENST00000394379.3:n.561-24dupA
  variant of: http://identifiers.org/hgnc/557
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3142
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10089
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2360
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40102
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ReadPosRankSum

17-35944896-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35944896
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 35944896
    reference: chr 17
allele count: 3
allele frequency: 2.514626745570066e-5
allele num: 119302
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000005279
  ensembl transcript: ENST00000346661
  gene symbol: SYNRG
  hgvsc: ENST00000346661.4:c.478-29G>C
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000424893
  ensembl transcript: ENST00000502449
  gene symbol: SYNRG
  hgvsc: ENST00000502449.2:c.478-29G>C
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000467193
  ensembl transcript: ENST00000427923
  gene symbol: SYNRG
  hgvsc: ENST00000427923.1:c.90-29G>C
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000468371
  ensembl transcript: ENST00000591288
  gene symbol: SYNRG
  hgvsc: ENST00000591288.1:c.478-29G>C
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466741
  ensembl transcript: ENST00000585472
  gene symbol: SYNRG
  hgvsc: ENST00000585472.1:c.475-29G>C
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000343610
  ensembl transcript: ENST00000339208
  gene symbol: SYNRG
  hgvsc: ENST00000339208.6:c.478-29G>C
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000378189
  gene symbol: SYNRG
  hgvsc: ENST00000378189.1:n.986-29G>C
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000315722
  ensembl transcript: ENST00000345615
  gene symbol: SYNRG
  hgvsc: ENST00000345615.4:c.478-29G>C
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000377903
  ensembl transcript: ENST00000394378
  gene symbol: SYNRG
  hgvsc: ENST00000394378.2:c.478-29G>C
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000394379
  gene symbol: SYNRG
  hgvsc: ENST00000394379.3:n.561-29G>C
  variant of: http://identifiers.org/hgnc/557
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37561
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2526
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9640
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3717
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3016
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1509
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1265
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum

17-35944911-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35944911
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 35944911
    reference: chr 17
allele count: 1
allele frequency: 8.477162524159914e-6
allele num: 117964
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466741
  ensembl transcript: ENST00000585472
  gene symbol: SYNRG
  hgvsc: ENST00000585472.1:c.475-44T>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000343610
  ensembl transcript: ENST00000339208
  gene symbol: SYNRG
  hgvsc: ENST00000339208.6:c.478-44T>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000315722
  ensembl transcript: ENST00000345615
  gene symbol: SYNRG
  hgvsc: ENST00000345615.4:c.478-44T>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000378189
  gene symbol: SYNRG
  hgvsc: ENST00000378189.1:n.986-44T>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000468371
  ensembl transcript: ENST00000591288
  gene symbol: SYNRG
  hgvsc: ENST00000591288.1:c.478-44T>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000394379
  gene symbol: SYNRG
  hgvsc: ENST00000394379.3:n.561-44T>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000005279
  ensembl transcript: ENST00000346661
  gene symbol: SYNRG
  hgvsc: ENST00000346661.4:c.478-44T>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000467193
  ensembl transcript: ENST00000427923
  gene symbol: SYNRG
  hgvsc: ENST00000427923.1:c.90-44T>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000424893
  ensembl transcript: ENST00000502449
  gene symbol: SYNRG
  hgvsc: ENST00000502449.2:c.478-44T>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000377903
  ensembl transcript: ENST00000394378
  gene symbol: SYNRG
  hgvsc: ENST00000394378.2:c.478-44T>A
  variant of: http://identifiers.org/hgnc/557
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4088
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2600
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7946
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32781
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8535
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1530
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3147
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3760
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: QD

17-35945402-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35945402
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 35945402
    reference: chr 17
allele count: 84
allele frequency: 6.963672840017907e-4
allele num: 120626
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000378189
  gene symbol: SYNRG
  hgvsc: ENST00000378189.1:n.985+31A>G
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000394379
  gene symbol: SYNRG
  hgvsc: ENST00000394379.3:n.560+31A>G
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000424893
  ensembl transcript: ENST00000502449
  gene symbol: SYNRG
  hgvsc: ENST00000502449.2:c.477+31A>G
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000468371
  ensembl transcript: ENST00000591288
  gene symbol: SYNRG
  hgvsc: ENST00000591288.1:c.477+31A>G
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000377903
  ensembl transcript: ENST00000394378
  gene symbol: SYNRG
  hgvsc: ENST00000394378.2:c.477+31A>G
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466741
  ensembl transcript: ENST00000585472
  gene symbol: SYNRG
  hgvsc: ENST00000585472.1:c.474+31A>G
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000005279
  ensembl transcript: ENST00000346661
  gene symbol: SYNRG
  hgvsc: ENST00000346661.4:c.477+31A>G
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000467193
  ensembl transcript: ENST00000427923
  gene symbol: SYNRG
  hgvsc: ENST00000427923.1:c.89+31A>G
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000315722
  ensembl transcript: ENST00000345615
  gene symbol: SYNRG
  hgvsc: ENST00000345615.4:c.477+31A>G
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000343610
  ensembl transcript: ENST00000339208
  gene symbol: SYNRG
  hgvsc: ENST00000339208.6:c.477+31A>G
  variant of: http://identifiers.org/hgnc/557
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2346
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3598
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4732
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8881
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 7.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 9637
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1537
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10849
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 9.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 9.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7056
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 7.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 5286
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 1
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD

17-35945415-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35945415
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 35945415
    reference: chr 17
allele count: 2
allele frequency: 1.653247805313538e-5
allele num: 120974
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466741
  ensembl transcript: ENST00000585472
  gene symbol: SYNRG
  hgvsc: ENST00000585472.1:c.474+18C>T
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000467193
  ensembl transcript: ENST00000427923
  gene symbol: SYNRG
  hgvsc: ENST00000427923.1:c.89+18C>T
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000468371
  ensembl transcript: ENST00000591288
  gene symbol: SYNRG
  hgvsc: ENST00000591288.1:c.477+18C>T
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000378189
  gene symbol: SYNRG
  hgvsc: ENST00000378189.1:n.985+18C>T
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000424893
  ensembl transcript: ENST00000502449
  gene symbol: SYNRG
  hgvsc: ENST00000502449.2:c.477+18C>T
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000343610
  ensembl transcript: ENST00000339208
  gene symbol: SYNRG
  hgvsc: ENST00000339208.6:c.477+18C>T
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000377903
  ensembl transcript: ENST00000394378
  gene symbol: SYNRG
  hgvsc: ENST00000394378.2:c.477+18C>T
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000394379
  gene symbol: SYNRG
  hgvsc: ENST00000394379.3:n.560+18C>T
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000315722
  ensembl transcript: ENST00000345615
  gene symbol: SYNRG
  hgvsc: ENST00000345615.4:c.477+18C>T
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000005279
  ensembl transcript: ENST00000346661
  gene symbol: SYNRG
  hgvsc: ENST00000346661.4:c.477+18C>T
  variant of: http://identifiers.org/hgnc/557
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9958
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5287
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2352
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5643
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10918
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8886
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7067
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3602
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff

17-35945421-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35945421
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 35945421
    reference: chr 17
allele count: 1
allele frequency: 8.255865792645674e-6
allele num: 121126
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000377903
  ensembl transcript: ENST00000394378
  gene symbol: SYNRG
  hgvsc: ENST00000394378.2:c.477+12A>G
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000378189
  gene symbol: SYNRG
  hgvsc: ENST00000378189.1:n.985+12A>G
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000424893
  ensembl transcript: ENST00000502449
  gene symbol: SYNRG
  hgvsc: ENST00000502449.2:c.477+12A>G
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466741
  ensembl transcript: ENST00000585472
  gene symbol: SYNRG
  hgvsc: ENST00000585472.1:c.474+12A>G
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000468371
  ensembl transcript: ENST00000591288
  gene symbol: SYNRG
  hgvsc: ENST00000591288.1:c.477+12A>G
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000343610
  ensembl transcript: ENST00000339208
  gene symbol: SYNRG
  hgvsc: ENST00000339208.6:c.477+12A>G
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000394379
  gene symbol: SYNRG
  hgvsc: ENST00000394379.3:n.560+12A>G
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000005279
  ensembl transcript: ENST00000346661
  gene symbol: SYNRG
  hgvsc: ENST00000346661.4:c.477+12A>G
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000467193
  ensembl transcript: ENST00000427923
  gene symbol: SYNRG
  hgvsc: ENST00000427923.1:c.89+12A>G
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000315722
  ensembl transcript: ENST00000345615
  gene symbol: SYNRG
  hgvsc: ENST00000345615.4:c.477+12A>G
  variant of: http://identifiers.org/hgnc/557
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8887
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7068
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5287
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3602
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5827
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10925
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2352
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10023
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3584
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: ClippingRankSum

17-35945422-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35945422
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 35945422
    reference: chr 17
allele count: 1
allele frequency: 8.254911672445104e-6
allele num: 121140
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000315722
  ensembl transcript: ENST00000345615
  gene symbol: SYNRG
  hgvsc: ENST00000345615.4:c.477+11A>T
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000377903
  ensembl transcript: ENST00000394378
  gene symbol: SYNRG
  hgvsc: ENST00000394378.2:c.477+11A>T
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000343610
  ensembl transcript: ENST00000339208
  gene symbol: SYNRG
  hgvsc: ENST00000339208.6:c.477+11A>T
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000378189
  gene symbol: SYNRG
  hgvsc: ENST00000378189.1:n.985+11A>T
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000394379
  gene symbol: SYNRG
  hgvsc: ENST00000394379.3:n.560+11A>T
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000424893
  ensembl transcript: ENST00000502449
  gene symbol: SYNRG
  hgvsc: ENST00000502449.2:c.477+11A>T
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000467193
  ensembl transcript: ENST00000427923
  gene symbol: SYNRG
  hgvsc: ENST00000427923.1:c.89+11A>T
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466741
  ensembl transcript: ENST00000585472
  gene symbol: SYNRG
  hgvsc: ENST00000585472.1:c.474+11A>T
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000468371
  ensembl transcript: ENST00000591288
  gene symbol: SYNRG
  hgvsc: ENST00000591288.1:c.477+11A>T
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000005279
  ensembl transcript: ENST00000346661
  gene symbol: SYNRG
  hgvsc: ENST00000346661.4:c.477+11A>T
  variant of: http://identifiers.org/hgnc/557
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5287
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10040
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3602
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7068
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5845
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8888
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10922
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2352
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: South Asian
reference allele: T
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

17-35945423-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35945423
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 35945423
    reference: chr 17
allele count: 1
allele frequency: 8.253685270473266e-6
allele num: 121158
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466741
  ensembl transcript: ENST00000585472
  gene symbol: SYNRG
  hgvsc: ENST00000585472.1:c.474+10C>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000467193
  ensembl transcript: ENST00000427923
  gene symbol: SYNRG
  hgvsc: ENST00000427923.1:c.89+10C>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000343610
  ensembl transcript: ENST00000339208
  gene symbol: SYNRG
  hgvsc: ENST00000339208.6:c.477+10C>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000377903
  ensembl transcript: ENST00000394378
  gene symbol: SYNRG
  hgvsc: ENST00000394378.2:c.477+10C>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000424893
  ensembl transcript: ENST00000502449
  gene symbol: SYNRG
  hgvsc: ENST00000502449.2:c.477+10C>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000468371
  ensembl transcript: ENST00000591288
  gene symbol: SYNRG
  hgvsc: ENST00000591288.1:c.477+10C>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000378189
  gene symbol: SYNRG
  hgvsc: ENST00000378189.1:n.985+10C>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000005279
  ensembl transcript: ENST00000346661
  gene symbol: SYNRG
  hgvsc: ENST00000346661.4:c.477+10C>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000315722
  ensembl transcript: ENST00000345615
  gene symbol: SYNRG
  hgvsc: ENST00000345615.4:c.477+10C>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000394379
  gene symbol: SYNRG
  hgvsc: ENST00000394379.3:n.560+10C>A
  variant of: http://identifiers.org/hgnc/557
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8886
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5857
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10053
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3602
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7071
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10930
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5287
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2353
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4103
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: DP

http://identifiers.org/exac.variant/17-35945424-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35945424
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 35945424
    reference: chr 17
allele count: 1
allele frequency: 8.251914444151043e-6
allele num: 121184
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000378189
  gene symbol: SYNRG
  hgvsc: ENST00000378189.1:n.985+9T>G
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000467193
  ensembl transcript: ENST00000427923
  gene symbol: SYNRG
  hgvsc: ENST00000427923.1:c.89+9T>G
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000468371
  ensembl transcript: ENST00000591288
  gene symbol: SYNRG
  hgvsc: ENST00000591288.1:c.477+9T>G
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000394379
  gene symbol: SYNRG
  hgvsc: ENST00000394379.3:n.560+9T>G
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000315722
  ensembl transcript: ENST00000345615
  gene symbol: SYNRG
  hgvsc: ENST00000345615.4:c.477+9T>G
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000005279
  ensembl transcript: ENST00000346661
  gene symbol: SYNRG
  hgvsc: ENST00000346661.4:c.477+9T>G
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000377903
  ensembl transcript: ENST00000394378
  gene symbol: SYNRG
  hgvsc: ENST00000394378.2:c.477+9T>G
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466741
  ensembl transcript: ENST00000585472
  gene symbol: SYNRG
  hgvsc: ENST00000585472.1:c.474+9T>G
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000424893
  ensembl transcript: ENST00000502449
  gene symbol: SYNRG
  hgvsc: ENST00000502449.2:c.477+9T>G
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000343610
  ensembl transcript: ENST00000339208
  gene symbol: SYNRG
  hgvsc: ENST00000339208.6:c.477+9T>G
  variant of: http://identifiers.org/hgnc/557
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5850
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3602
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10080
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2352
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8890
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7069
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5287
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10929
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4020
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17037
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: QD

17-35945427-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35945427
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 35945427
    reference: chr 17
allele count: 1
allele frequency: 8.250280509537325e-6
allele num: 121208
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000377903
  ensembl transcript: ENST00000394378
  gene symbol: SYNRG
  hgvsc: ENST00000394378.2:c.477+6A>C
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000468371
  ensembl transcript: ENST00000591288
  gene symbol: SYNRG
  hgvsc: ENST00000591288.1:c.477+6A>C
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000467193
  ensembl transcript: ENST00000427923
  gene symbol: SYNRG
  hgvsc: ENST00000427923.1:c.89+6A>C
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000315722
  ensembl transcript: ENST00000345615
  gene symbol: SYNRG
  hgvsc: ENST00000345615.4:c.477+6A>C
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000378189
  gene symbol: SYNRG
  hgvsc: ENST00000378189.1:n.985+6A>C
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000343610
  ensembl transcript: ENST00000339208
  gene symbol: SYNRG
  hgvsc: ENST00000339208.6:c.477+6A>C
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000424893
  ensembl transcript: ENST00000502449
  gene symbol: SYNRG
  hgvsc: ENST00000502449.2:c.477+6A>C
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000005279
  ensembl transcript: ENST00000346661
  gene symbol: SYNRG
  hgvsc: ENST00000346661.4:c.477+6A>C
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000394379
  gene symbol: SYNRG
  hgvsc: ENST00000394379.3:n.560+6A>C
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466741
  ensembl transcript: ENST00000585472
  gene symbol: SYNRG
  hgvsc: ENST00000585472.1:c.474+6A>C
  variant of: http://identifiers.org/hgnc/557
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5287
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2352
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5869
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10115
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3602
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8891
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10925
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7067
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 2.25e1
  variant carriers: 0
hgvs: c.477+6A>C
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ

17-35945430-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35945430
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 35945430
    reference: chr 17
allele count: 1
allele frequency: 8.247966876165026e-6
allele num: 121242
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000377903
  ensembl transcript: ENST00000394378
  gene symbol: SYNRG
  hgvsc: ENST00000394378.2:c.477+3A>T
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000394379
  gene symbol: SYNRG
  hgvsc: ENST00000394379.3:n.560+3A>T
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000315722
  ensembl transcript: ENST00000345615
  gene symbol: SYNRG
  hgvsc: ENST00000345615.4:c.477+3A>T
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000424893
  ensembl transcript: ENST00000502449
  gene symbol: SYNRG
  hgvsc: ENST00000502449.2:c.477+3A>T
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466741
  ensembl transcript: ENST00000585472
  gene symbol: SYNRG
  hgvsc: ENST00000585472.1:c.474+3A>T
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000005279
  ensembl transcript: ENST00000346661
  gene symbol: SYNRG
  hgvsc: ENST00000346661.4:c.477+3A>T
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000468371
  ensembl transcript: ENST00000591288
  gene symbol: SYNRG
  hgvsc: ENST00000591288.1:c.477+3A>T
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000378189
  gene symbol: SYNRG
  hgvsc: ENST00000378189.1:n.985+3A>T
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000467193
  ensembl transcript: ENST00000427923
  gene symbol: SYNRG
  hgvsc: ENST00000427923.1:c.89+3A>T
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000343610
  ensembl transcript: ENST00000339208
  gene symbol: SYNRG
  hgvsc: ENST00000339208.6:c.477+3A>T
  variant of: http://identifiers.org/hgnc/557
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7067
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10129
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8890
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3602
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5886
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10935
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2353
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5287
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.25e1
  variant carriers: 0
hgvs: c.477+3A>T
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum

17-35945446-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35945446
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 35945446
    reference: chr 17
allele count: 1
allele frequency: 8.242256400112095e-6
allele num: 121326
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000467193
  ensembl transcript: ENST00000427923
  gene symbol: SYNRG
  hgvsc: ENST00000427923.1:c.76G>A
  hgvsp: ENSP00000467193.1:p.Ser26Asn
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000468371
  ensembl transcript: ENST00000591288
  gene symbol: SYNRG
  hgvsc: ENST00000591288.1:c.464G>A
  hgvsp: ENSP00000468371.1:p.Ser155Asn
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000005279
  ensembl transcript: ENST00000346661
  gene symbol: SYNRG
  hgvsc: ENST00000346661.4:c.464G>A
  hgvsp: ENSP00000005279.4:p.Ser155Asn
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000424893
  ensembl transcript: ENST00000502449
  gene symbol: SYNRG
  hgvsc: ENST00000502449.2:c.464G>A
  hgvsp: ENSP00000424893.2:p.Ser155Asn
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000378189
  gene symbol: SYNRG
  hgvsc: ENST00000378189.1:n.972G>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000343610
  ensembl transcript: ENST00000339208
  gene symbol: SYNRG
  hgvsc: ENST00000339208.6:c.464G>A
  hgvsp: ENSP00000343610.6:p.Ser155Asn
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000377903
  ensembl transcript: ENST00000394378
  gene symbol: SYNRG
  hgvsc: ENST00000394378.2:c.464G>A
  hgvsp: ENSP00000377903.2:p.Ser155Asn
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000394379
  gene symbol: SYNRG
  hgvsc: ENST00000394379.3:n.547G>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000315722
  ensembl transcript: ENST00000345615
  gene symbol: SYNRG
  hgvsc: ENST00000345615.4:c.464G>A
  hgvsp: ENSP00000315722.5:p.Ser155Asn
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466741
  ensembl transcript: ENST00000585472
  gene symbol: SYNRG
  hgvsc: ENST00000585472.1:c.461G>A
  hgvsp: ENSP00000466741.1:p.Ser154Asn
  variant of: http://identifiers.org/hgnc/557
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5893
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5287
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10939
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10192
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3601
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8892
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2352
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7069
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17226
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ser155Asn
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

17-35945450-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35945450
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 35945450
    reference: chr 17
allele count: 10
allele frequency: 8.241712957621112e-5
allele num: 121334
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000424893
  ensembl transcript: ENST00000502449
  gene symbol: SYNRG
  hgvsc: ENST00000502449.2:c.460A>G
  hgvsp: ENSP00000424893.2:p.Ser154Gly
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000378189
  gene symbol: SYNRG
  hgvsc: ENST00000378189.1:n.968A>G
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: incomplete_terminal_codon_variant
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466456
  ensembl transcript: ENST00000585689
  gene symbol: SYNRG
  hgvsc: ENST00000585689.1:c.376A>G
  hgvsp: ENST00000585689.1:c.376A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466741
  ensembl transcript: ENST00000585472
  gene symbol: SYNRG
  hgvsc: ENST00000585472.1:c.457A>G
  hgvsp: ENSP00000466741.1:p.Ser153Gly
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000343610
  ensembl transcript: ENST00000339208
  gene symbol: SYNRG
  hgvsc: ENST00000339208.6:c.460A>G
  hgvsp: ENSP00000343610.6:p.Ser154Gly
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000315722
  ensembl transcript: ENST00000345615
  gene symbol: SYNRG
  hgvsc: ENST00000345615.4:c.460A>G
  hgvsp: ENSP00000315722.5:p.Ser154Gly
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000467193
  ensembl transcript: ENST00000427923
  gene symbol: SYNRG
  hgvsc: ENST00000427923.1:c.72A>G
  hgvsp: ENSP00000467193.1:p.Ser25Gly
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000005279
  ensembl transcript: ENST00000346661
  gene symbol: SYNRG
  hgvsc: ENST00000346661.4:c.460A>G
  hgvsp: ENSP00000005279.4:p.Ser154Gly
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000468371
  ensembl transcript: ENST00000591288
  gene symbol: SYNRG
  hgvsc: ENST00000591288.1:c.460A>G
  hgvsp: ENSP00000468371.1:p.Ser154Gly
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000394379
  gene symbol: SYNRG
  hgvsc: ENST00000394379.3:n.543A>G
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000377903
  ensembl transcript: ENST00000394378
  gene symbol: SYNRG
  hgvsc: ENST00000394378.2:c.460A>G
  hgvsp: ENSP00000377903.2:p.Ser154Gly
  variant of: http://identifiers.org/hgnc/557
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5286
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10935
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2351
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10192
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8893
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5899
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7068
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser154Gly
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum

17-35945453-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35945453
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 35945453
    reference: chr 17
allele count: 1
allele frequency: 8.241033755274261e-6
allele num: 121344
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000394379
  gene symbol: SYNRG
  hgvsc: ENST00000394379.3:n.540T>C
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000343610
  ensembl transcript: ENST00000339208
  gene symbol: SYNRG
  hgvsc: ENST00000339208.6:c.457T>C
  hgvsp: ENST00000339208.6:c.457T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466741
  ensembl transcript: ENST00000585472
  gene symbol: SYNRG
  hgvsc: ENST00000585472.1:c.454T>C
  hgvsp: ENST00000585472.1:c.454T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000315722
  ensembl transcript: ENST00000345615
  gene symbol: SYNRG
  hgvsc: ENST00000345615.4:c.457T>C
  hgvsp: ENST00000345615.4:c.457T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000424893
  ensembl transcript: ENST00000502449
  gene symbol: SYNRG
  hgvsc: ENST00000502449.2:c.457T>C
  hgvsp: ENST00000502449.2:c.457T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000467193
  ensembl transcript: ENST00000427923
  gene symbol: SYNRG
  hgvsc: ENST00000427923.1:c.69T>C
  hgvsp: ENST00000427923.1:c.69T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466456
  ensembl transcript: ENST00000585689
  gene symbol: SYNRG
  hgvsc: ENST00000585689.1:c.373T>C
  hgvsp: ENST00000585689.1:c.373T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000378189
  gene symbol: SYNRG
  hgvsc: ENST00000378189.1:n.965T>C
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000377903
  ensembl transcript: ENST00000394378
  gene symbol: SYNRG
  hgvsc: ENST00000394378.2:c.457T>C
  hgvsp: ENST00000394378.2:c.457T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000468371
  ensembl transcript: ENST00000591288
  gene symbol: SYNRG
  hgvsc: ENST00000591288.1:c.457T>C
  hgvsp: ENST00000591288.1:c.457T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000005279
  ensembl transcript: ENST00000346661
  gene symbol: SYNRG
  hgvsc: ENST00000346661.4:c.457T>C
  hgvsp: ENST00000346661.4:c.457T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/557
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10937
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10196
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2352
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3597
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5286
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8895
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5907
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu153Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: Latino
population: African
reference allele: A
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum

17-35945464-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35945464
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 35945464
    reference: chr 17
allele count: 1
allele frequency: 8.242256400112095e-6
allele num: 121326
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000377903
  ensembl transcript: ENST00000394378
  gene symbol: SYNRG
  hgvsc: ENST00000394378.2:c.446A>G
  hgvsp: ENSP00000377903.2:p.Lys149Arg
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466456
  ensembl transcript: ENST00000585689
  gene symbol: SYNRG
  hgvsc: ENST00000585689.1:c.362A>G
  hgvsp: ENSP00000466456.1:p.Lys121Arg
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000343610
  ensembl transcript: ENST00000339208
  gene symbol: SYNRG
  hgvsc: ENST00000339208.6:c.446A>G
  hgvsp: ENSP00000343610.6:p.Lys149Arg
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000468371
  ensembl transcript: ENST00000591288
  gene symbol: SYNRG
  hgvsc: ENST00000591288.1:c.446A>G
  hgvsp: ENSP00000468371.1:p.Lys149Arg
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000394379
  gene symbol: SYNRG
  hgvsc: ENST00000394379.3:n.529A>G
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466741
  ensembl transcript: ENST00000585472
  gene symbol: SYNRG
  hgvsc: ENST00000585472.1:c.443A>G
  hgvsp: ENSP00000466741.1:p.Lys148Arg
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000424893
  ensembl transcript: ENST00000502449
  gene symbol: SYNRG
  hgvsc: ENST00000502449.2:c.446A>G
  hgvsp: ENSP00000424893.2:p.Lys149Arg
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000467193
  ensembl transcript: ENST00000427923
  gene symbol: SYNRG
  hgvsc: ENST00000427923.1:c.58A>G
  hgvsp: ENSP00000467193.1:p.Lys20Arg
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000005279
  ensembl transcript: ENST00000346661
  gene symbol: SYNRG
  hgvsc: ENST00000346661.4:c.446A>G
  hgvsp: ENSP00000005279.4:p.Lys149Arg
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000378189
  gene symbol: SYNRG
  hgvsc: ENST00000378189.1:n.954A>G
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000315722
  ensembl transcript: ENST00000345615
  gene symbol: SYNRG
  hgvsc: ENST00000345615.4:c.446A>G
  hgvsp: ENSP00000315722.5:p.Lys149Arg
  variant of: http://identifiers.org/hgnc/557
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8895
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3597
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7068
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10187
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5911
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2351
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10933
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys149Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: African
population: Latino
population: East Asian
reference allele: T
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: QD

17-35945469-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35945469
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 35945469
    reference: chr 17
allele count: 1
allele frequency: 8.242935804015958e-6
allele num: 121316
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000468371
  ensembl transcript: ENST00000591288
  gene symbol: SYNRG
  hgvsc: ENST00000591288.1:c.441G>A
  hgvsp: ENST00000591288.1:c.441G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466741
  ensembl transcript: ENST00000585472
  gene symbol: SYNRG
  hgvsc: ENST00000585472.1:c.438G>A
  hgvsp: ENST00000585472.1:c.438G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000378189
  gene symbol: SYNRG
  hgvsc: ENST00000378189.1:n.949G>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000394379
  gene symbol: SYNRG
  hgvsc: ENST00000394379.3:n.524G>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000315722
  ensembl transcript: ENST00000345615
  gene symbol: SYNRG
  hgvsc: ENST00000345615.4:c.441G>A
  hgvsp: ENST00000345615.4:c.441G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000005279
  ensembl transcript: ENST00000346661
  gene symbol: SYNRG
  hgvsc: ENST00000346661.4:c.441G>A
  hgvsp: ENST00000346661.4:c.441G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000377903
  ensembl transcript: ENST00000394378
  gene symbol: SYNRG
  hgvsc: ENST00000394378.2:c.441G>A
  hgvsp: ENST00000394378.2:c.441G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466456
  ensembl transcript: ENST00000585689
  gene symbol: SYNRG
  hgvsc: ENST00000585689.1:c.357G>A
  hgvsp: ENST00000585689.1:c.357G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000467193
  ensembl transcript: ENST00000427923
  gene symbol: SYNRG
  hgvsc: ENST00000427923.1:c.53G>A
  hgvsp: ENST00000427923.1:c.53G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000424893
  ensembl transcript: ENST00000502449
  gene symbol: SYNRG
  hgvsc: ENST00000502449.2:c.441G>A
  hgvsp: ENST00000502449.2:c.441G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000343610
  ensembl transcript: ENST00000339208
  gene symbol: SYNRG
  hgvsc: ENST00000339208.6:c.441G>A
  hgvsp: ENST00000339208.6:c.441G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/557
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7068
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10182
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5910
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2351
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10931
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8895
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3597
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5286
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys147Lys
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
reference allele: C
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum

17-35945483-A-ACTG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35945483
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 35945486
    reference: chr 17
allele count: 1
allele frequency: 8.250416646040625e-6
allele num: 121206
alternate allele: ACTG
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000377903
  ensembl transcript: ENST00000394378
  gene symbol: SYNRG
  hgvsc: ENST00000394378.2:c.424_426dupCAG
  hgvsp: ENSP00000377903.2:p.Gln142dup
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000005279
  ensembl transcript: ENST00000346661
  gene symbol: SYNRG
  hgvsc: ENST00000346661.4:c.424_426dupCAG
  hgvsp: ENSP00000005279.4:p.Gln142dup
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466741
  ensembl transcript: ENST00000585472
  gene symbol: SYNRG
  hgvsc: ENST00000585472.1:c.421_423dupCAG
  hgvsp: ENSP00000466741.1:p.Gln141dup
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000468371
  ensembl transcript: ENST00000591288
  gene symbol: SYNRG
  hgvsc: ENST00000591288.1:c.424_426dupCAG
  hgvsp: ENSP00000468371.1:p.Gln142dup
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466456
  ensembl transcript: ENST00000585689
  gene symbol: SYNRG
  hgvsc: ENST00000585689.1:c.340_342dupCAG
  hgvsp: ENSP00000466456.1:p.Gln114dup
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000467193
  ensembl transcript: ENST00000427923
  gene symbol: SYNRG
  hgvsc: ENST00000427923.1:c.36_38dupCAG
  hgvsp: ENSP00000467193.1:p.Gln13dup
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000378189
  gene symbol: SYNRG
  hgvsc: ENST00000378189.1:n.932_934dupCAG
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000424893
  ensembl transcript: ENST00000502449
  gene symbol: SYNRG
  hgvsc: ENST00000502449.2:c.424_426dupCAG
  hgvsp: ENSP00000424893.2:p.Gln142dup
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000343610
  ensembl transcript: ENST00000339208
  gene symbol: SYNRG
  hgvsc: ENST00000339208.6:c.424_426dupCAG
  hgvsp: ENSP00000343610.6:p.Gln142dup
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000315722
  ensembl transcript: ENST00000345615
  gene symbol: SYNRG
  hgvsc: ENST00000345615.4:c.424_426dupCAG
  hgvsp: ENSP00000315722.5:p.Gln142dup
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000394379
  gene symbol: SYNRG
  hgvsc: ENST00000394379.3:n.507_509dupCAG
  variant of: http://identifiers.org/hgnc/557
canonical: true
consequence: inframe insertion
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2351
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8895
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10146
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5286
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10923
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5857
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7068
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln142dup
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: A
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff

17-35945489-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35945489
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 35945489
    reference: chr 17
allele count: 2
allele frequency: 1.651064110819423e-5
allele num: 121134
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000424893
  ensembl transcript: ENST00000502449
  gene symbol: SYNRG
  hgvsc: ENST00000502449.2:c.421C>T
  hgvsp: ENSP00000424893.2:p.Arg141Cys
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466456
  ensembl transcript: ENST00000585689
  gene symbol: SYNRG
  hgvsc: ENST00000585689.1:c.337C>T
  hgvsp: ENSP00000466456.1:p.Arg113Cys
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000468371
  ensembl transcript: ENST00000591288
  gene symbol: SYNRG
  hgvsc: ENST00000591288.1:c.421C>T
  hgvsp: ENSP00000468371.1:p.Arg141Cys
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000378189
  gene symbol: SYNRG
  hgvsc: ENST00000378189.1:n.929C>T
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466741
  ensembl transcript: ENST00000585472
  gene symbol: SYNRG
  hgvsc: ENST00000585472.1:c.418C>T
  hgvsp: ENSP00000466741.1:p.Arg140Cys
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000467193
  ensembl transcript: ENST00000427923
  gene symbol: SYNRG
  hgvsc: ENST00000427923.1:c.33C>T
  hgvsp: ENSP00000467193.1:p.Arg12Cys
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000343610
  ensembl transcript: ENST00000339208
  gene symbol: SYNRG
  hgvsc: ENST00000339208.6:c.421C>T
  hgvsp: ENSP00000343610.6:p.Arg141Cys
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000005279
  ensembl transcript: ENST00000346661
  gene symbol: SYNRG
  hgvsc: ENST00000346661.4:c.421C>T
  hgvsp: ENSP00000005279.4:p.Arg141Cys
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000377903
  ensembl transcript: ENST00000394378
  gene symbol: SYNRG
  hgvsc: ENST00000394378.2:c.421C>T
  hgvsp: ENSP00000377903.2:p.Arg141Cys
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000315722
  ensembl transcript: ENST00000345615
  gene symbol: SYNRG
  hgvsc: ENST00000345615.4:c.421C>T
  hgvsp: ENSP00000315722.5:p.Arg141Cys
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000394379
  gene symbol: SYNRG
  hgvsc: ENST00000394379.3:n.504C>T
  variant of: http://identifiers.org/hgnc/557
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5837
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2351
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8895
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10911
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3597
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5286
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7068
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10113
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg141Cys
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

17-35945533-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35945533
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 35945533
    reference: chr 17
allele count: 1
allele frequency: 8.321959988016378e-6
allele num: 120164
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000005279
  ensembl transcript: ENST00000346661
  gene symbol: SYNRG
  hgvsc: ENST00000346661.4:c.377G>A
  hgvsp: ENSP00000005279.4:p.Arg126Gln
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000377903
  ensembl transcript: ENST00000394378
  gene symbol: SYNRG
  hgvsc: ENST00000394378.2:c.377G>A
  hgvsp: ENSP00000377903.2:p.Arg126Gln
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000343610
  ensembl transcript: ENST00000339208
  gene symbol: SYNRG
  hgvsc: ENST00000339208.6:c.377G>A
  hgvsp: ENSP00000343610.6:p.Arg126Gln
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466741
  ensembl transcript: ENST00000585472
  gene symbol: SYNRG
  hgvsc: ENST00000585472.1:c.374G>A
  hgvsp: ENSP00000466741.1:p.Arg125Gln
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000424893
  ensembl transcript: ENST00000502449
  gene symbol: SYNRG
  hgvsc: ENST00000502449.2:c.377G>A
  hgvsp: ENSP00000424893.2:p.Arg126Gln
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000315722
  ensembl transcript: ENST00000345615
  gene symbol: SYNRG
  hgvsc: ENST00000345615.4:c.377G>A
  hgvsp: ENSP00000315722.5:p.Arg126Gln
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000378189
  gene symbol: SYNRG
  hgvsc: ENST00000378189.1:n.885G>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000468371
  ensembl transcript: ENST00000591288
  gene symbol: SYNRG
  hgvsc: ENST00000591288.1:c.377G>A
  hgvsp: ENSP00000468371.1:p.Arg126Gln
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466456
  ensembl transcript: ENST00000585689
  gene symbol: SYNRG
  hgvsc: ENST00000585689.1:c.293G>A
  hgvsp: ENSP00000466456.1:p.Arg98Gln
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000394379
  gene symbol: SYNRG
  hgvsc: ENST00000394379.3:n.460G>A
  variant of: http://identifiers.org/hgnc/557
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7062
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5428
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10799
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2349
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9718
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8878
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5287
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3596
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2419
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3582
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg126Gln
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff

17-35945545-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35945545
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 35945545
    reference: chr 17
allele count: 8
allele frequency: 6.682705159048383e-5
allele num: 119712
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000005279
  ensembl transcript: ENST00000346661
  gene symbol: SYNRG
  hgvsc: ENST00000346661.4:c.372-7C>T
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000424893
  ensembl transcript: ENST00000502449
  gene symbol: SYNRG
  hgvsc: ENST00000502449.2:c.372-7C>T
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000315722
  ensembl transcript: ENST00000345615
  gene symbol: SYNRG
  hgvsc: ENST00000345615.4:c.372-7C>T
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000378189
  gene symbol: SYNRG
  hgvsc: ENST00000378189.1:n.880-7C>T
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000377903
  ensembl transcript: ENST00000394378
  gene symbol: SYNRG
  hgvsc: ENST00000394378.2:c.372-7C>T
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466456
  ensembl transcript: ENST00000585689
  gene symbol: SYNRG
  hgvsc: ENST00000585689.1:c.288-7C>T
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000468371
  ensembl transcript: ENST00000591288
  gene symbol: SYNRG
  hgvsc: ENST00000591288.1:c.372-7C>T
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000343610
  ensembl transcript: ENST00000339208
  gene symbol: SYNRG
  hgvsc: ENST00000339208.6:c.372-7C>T
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000394379
  gene symbol: SYNRG
  hgvsc: ENST00000394379.3:n.455-7C>T
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466741
  ensembl transcript: ENST00000585472
  gene symbol: SYNRG
  hgvsc: ENST00000585472.1:c.369-7C>T
  variant of: http://identifiers.org/hgnc/557
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5213
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5284
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7060
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9554
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1358
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3594
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10716
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2350
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8866
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 3.25e1
  variant carriers: 0
hgvs: c.372-7C>T
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

17-35945555-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35945555
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 35945555
    reference: chr 17
allele count: 1
allele frequency: 8.383916294979712e-6
allele num: 119276
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000343610
  ensembl transcript: ENST00000339208
  gene symbol: SYNRG
  hgvsc: ENST00000339208.6:c.372-17G>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000424893
  ensembl transcript: ENST00000502449
  gene symbol: SYNRG
  hgvsc: ENST00000502449.2:c.372-17G>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000315722
  ensembl transcript: ENST00000345615
  gene symbol: SYNRG
  hgvsc: ENST00000345615.4:c.372-17G>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000378189
  gene symbol: SYNRG
  hgvsc: ENST00000378189.1:n.880-17G>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000377903
  ensembl transcript: ENST00000394378
  gene symbol: SYNRG
  hgvsc: ENST00000394378.2:c.372-17G>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000394379
  gene symbol: SYNRG
  hgvsc: ENST00000394379.3:n.455-17G>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466456
  ensembl transcript: ENST00000585689
  gene symbol: SYNRG
  hgvsc: ENST00000585689.1:c.288-17G>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000005279
  ensembl transcript: ENST00000346661
  gene symbol: SYNRG
  hgvsc: ENST00000346661.4:c.372-17G>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466741
  ensembl transcript: ENST00000585472
  gene symbol: SYNRG
  hgvsc: ENST00000585472.1:c.369-17G>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000468371
  ensembl transcript: ENST00000591288
  gene symbol: SYNRG
  hgvsc: ENST00000591288.1:c.372-17G>A
  variant of: http://identifiers.org/hgnc/557
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8848
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1105
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7059
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3595
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9290
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10609
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5285
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1534
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4925
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2351
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff

17-35945569-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35945569
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 35945569
    reference: chr 17
allele count: 2
allele frequency: 1.688561683158286e-5
allele num: 118444
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000394379
  gene symbol: SYNRG
  hgvsc: ENST00000394379.3:n.455-31C>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000424893
  ensembl transcript: ENST00000502449
  gene symbol: SYNRG
  hgvsc: ENST00000502449.2:c.372-31C>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000315722
  ensembl transcript: ENST00000345615
  gene symbol: SYNRG
  hgvsc: ENST00000345615.4:c.372-31C>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000005279
  ensembl transcript: ENST00000346661
  gene symbol: SYNRG
  hgvsc: ENST00000346661.4:c.372-31C>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466456
  ensembl transcript: ENST00000585689
  gene symbol: SYNRG
  hgvsc: ENST00000585689.1:c.288-31C>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000378189
  gene symbol: SYNRG
  hgvsc: ENST00000378189.1:n.880-31C>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000343610
  ensembl transcript: ENST00000339208
  gene symbol: SYNRG
  hgvsc: ENST00000339208.6:c.372-31C>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000377903
  ensembl transcript: ENST00000394378
  gene symbol: SYNRG
  hgvsc: ENST00000394378.2:c.372-31C>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000468371
  ensembl transcript: ENST00000591288
  gene symbol: SYNRG
  hgvsc: ENST00000591288.1:c.372-31C>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466741
  ensembl transcript: ENST00000585472
  gene symbol: SYNRG
  hgvsc: ENST00000585472.1:c.369-31C>A
  variant of: http://identifiers.org/hgnc/557
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7012
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2197
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5272
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3592
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10062
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8683
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1532
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4120
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8518
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2351
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2364
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 695
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

17-35945570-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35945570
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 35945570
    reference: chr 17
allele count: 1
allele frequency: 8.449656943928076e-6
allele num: 118348
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000343610
  ensembl transcript: ENST00000339208
  gene symbol: SYNRG
  hgvsc: ENST00000339208.6:c.372-32G>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000468371
  ensembl transcript: ENST00000591288
  gene symbol: SYNRG
  hgvsc: ENST00000591288.1:c.372-32G>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000424893
  ensembl transcript: ENST00000502449
  gene symbol: SYNRG
  hgvsc: ENST00000502449.2:c.372-32G>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000315722
  ensembl transcript: ENST00000345615
  gene symbol: SYNRG
  hgvsc: ENST00000345615.4:c.372-32G>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466741
  ensembl transcript: ENST00000585472
  gene symbol: SYNRG
  hgvsc: ENST00000585472.1:c.369-32G>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000378189
  gene symbol: SYNRG
  hgvsc: ENST00000378189.1:n.880-32G>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000377903
  ensembl transcript: ENST00000394378
  gene symbol: SYNRG
  hgvsc: ENST00000394378.2:c.372-32G>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000005279
  ensembl transcript: ENST00000346661
  gene symbol: SYNRG
  hgvsc: ENST00000346661.4:c.372-32G>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466456
  ensembl transcript: ENST00000585689
  gene symbol: SYNRG
  hgvsc: ENST00000585689.1:c.288-32G>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000394379
  gene symbol: SYNRG
  hgvsc: ENST00000394379.3:n.455-32G>A
  variant of: http://identifiers.org/hgnc/557
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8438
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5268
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4017
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8662
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1532
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7003
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2263
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10004
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3592
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2351
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1218
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2193
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2032
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/17-35945573-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35945573
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 35945573
    reference: chr 17
allele count: 1
allele frequency: 8.465536799688468e-6
allele num: 118126
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000378189
  gene symbol: SYNRG
  hgvsc: ENST00000378189.1:n.880-35G>T
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000343610
  ensembl transcript: ENST00000339208
  gene symbol: SYNRG
  hgvsc: ENST00000339208.6:c.372-35G>T
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000468371
  ensembl transcript: ENST00000591288
  gene symbol: SYNRG
  hgvsc: ENST00000591288.1:c.372-35G>T
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000394379
  gene symbol: SYNRG
  hgvsc: ENST00000394379.3:n.455-35G>T
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000377903
  ensembl transcript: ENST00000394378
  gene symbol: SYNRG
  hgvsc: ENST00000394378.2:c.372-35G>T
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466741
  ensembl transcript: ENST00000585472
  gene symbol: SYNRG
  hgvsc: ENST00000585472.1:c.369-35G>T
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000424893
  ensembl transcript: ENST00000502449
  gene symbol: SYNRG
  hgvsc: ENST00000502449.2:c.372-35G>T
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000005279
  ensembl transcript: ENST00000346661
  gene symbol: SYNRG
  hgvsc: ENST00000346661.4:c.372-35G>T
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466456
  ensembl transcript: ENST00000585689
  gene symbol: SYNRG
  hgvsc: ENST00000585689.1:c.288-35G>T
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000315722
  ensembl transcript: ENST00000345615
  gene symbol: SYNRG
  hgvsc: ENST00000345615.4:c.372-35G>T
  variant of: http://identifiers.org/hgnc/557
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5259
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1914
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3592
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8149
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8560
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6964
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2342
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3865
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2351
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1532
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9708
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11943
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21445
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2165
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: Latino
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: BaseQRankSum

17-35945574-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35945574
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 35945574
    reference: chr 17
allele count: 328
allele frequency: 2.780273619611101e-3
allele num: 117974
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000378189
  gene symbol: SYNRG
  hgvsc: ENST00000378189.1:n.880-36G>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466456
  ensembl transcript: ENST00000585689
  gene symbol: SYNRG
  hgvsc: ENST00000585689.1:c.288-36G>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000394379
  gene symbol: SYNRG
  hgvsc: ENST00000394379.3:n.455-36G>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000343610
  ensembl transcript: ENST00000339208
  gene symbol: SYNRG
  hgvsc: ENST00000339208.6:c.372-36G>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000377903
  ensembl transcript: ENST00000394378
  gene symbol: SYNRG
  hgvsc: ENST00000394378.2:c.372-36G>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000315722
  ensembl transcript: ENST00000345615
  gene symbol: SYNRG
  hgvsc: ENST00000345615.4:c.372-36G>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000468371
  ensembl transcript: ENST00000591288
  gene symbol: SYNRG
  hgvsc: ENST00000591288.1:c.372-36G>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466741
  ensembl transcript: ENST00000585472
  gene symbol: SYNRG
  hgvsc: ENST00000585472.1:c.369-36G>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000005279
  ensembl transcript: ENST00000346661
  gene symbol: SYNRG
  hgvsc: ENST00000346661.4:c.372-36G>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000424893
  ensembl transcript: ENST00000502449
  gene symbol: SYNRG
  hgvsc: ENST00000502449.2:c.372-36G>A
  variant of: http://identifiers.org/hgnc/557
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6959
  bin: 4.25e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3592
  bin: 5.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 8001
  bin: 2.75e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 8484
  bin: 3.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 2358
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9610
  bin: 3.25e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2350
  bin: 5.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 6.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 5247
  bin: 4.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2315
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1537
  bin: 6.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 3725
  bin: 2.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 7.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 7.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 4900
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 552
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 6
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

17-35945575-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35945575
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 35945575
    reference: chr 17
allele count: 539
allele frequency: 4.571128110317689e-3
allele num: 117914
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000005279
  ensembl transcript: ENST00000346661
  gene symbol: SYNRG
  hgvsc: ENST00000346661.4:c.372-37C>T
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000343610
  ensembl transcript: ENST00000339208
  gene symbol: SYNRG
  hgvsc: ENST00000339208.6:c.372-37C>T
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000468371
  ensembl transcript: ENST00000591288
  gene symbol: SYNRG
  hgvsc: ENST00000591288.1:c.372-37C>T
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000377903
  ensembl transcript: ENST00000394378
  gene symbol: SYNRG
  hgvsc: ENST00000394378.2:c.372-37C>T
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000315722
  ensembl transcript: ENST00000345615
  gene symbol: SYNRG
  hgvsc: ENST00000345615.4:c.372-37C>T
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466741
  ensembl transcript: ENST00000585472
  gene symbol: SYNRG
  hgvsc: ENST00000585472.1:c.369-37C>T
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000424893
  ensembl transcript: ENST00000502449
  gene symbol: SYNRG
  hgvsc: ENST00000502449.2:c.372-37C>T
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000378189
  gene symbol: SYNRG
  hgvsc: ENST00000378189.1:n.880-37C>T
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466456
  ensembl transcript: ENST00000585689
  gene symbol: SYNRG
  hgvsc: ENST00000585689.1:c.288-37C>T
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000394379
  gene symbol: SYNRG
  hgvsc: ENST00000394379.3:n.455-37C>T
  variant of: http://identifiers.org/hgnc/557
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 9.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 9625
  bin: 3.25e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 2369
  bin: 1.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 8.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 8082
  bin: 2.75e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 3585
  bin: 5.25e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 9.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 6948
  bin: 4.25e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 7.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 6.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 1515
  bin: 6.25e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5225
  bin: 4.75e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 2332
  bin: 1.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 7.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 3688
  bin: 2.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 8.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 2345
  bin: 5.75e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 8477
  bin: 3.75e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 7.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 1076
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3949
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 5
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ClippingRankSum

17-35945577-GATTATAC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35945577
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 35945570
    reference: chr 17
allele count: 2
allele frequency: 1.697245370763251e-5
allele num: 117838
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000468371
  ensembl transcript: ENST00000591288
  gene symbol: SYNRG
  hgvsc: ENST00000591288.1:c.372-46_372-40delGTATAAT
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000424893
  ensembl transcript: ENST00000502449
  gene symbol: SYNRG
  hgvsc: ENST00000502449.2:c.372-46_372-40delGTATAAT
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466741
  ensembl transcript: ENST00000585472
  gene symbol: SYNRG
  hgvsc: ENST00000585472.1:c.369-46_369-40delGTATAAT
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000315722
  ensembl transcript: ENST00000345615
  gene symbol: SYNRG
  hgvsc: ENST00000345615.4:c.372-46_372-40delGTATAAT
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000005279
  ensembl transcript: ENST00000346661
  gene symbol: SYNRG
  hgvsc: ENST00000346661.4:c.372-46_372-40delGTATAAT
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466456
  ensembl transcript: ENST00000585689
  gene symbol: SYNRG
  hgvsc: ENST00000585689.1:c.288-46_288-40delGTATAAT
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000394379
  gene symbol: SYNRG
  hgvsc: ENST00000394379.3:n.455-46_455-40delGTATAAT
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000378189
  gene symbol: SYNRG
  hgvsc: ENST00000378189.1:n.880-46_880-40delGTATAAT
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000343610
  ensembl transcript: ENST00000339208
  gene symbol: SYNRG
  hgvsc: ENST00000339208.6:c.372-46_372-40delGTATAAT
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000377903
  ensembl transcript: ENST00000394378
  gene symbol: SYNRG
  hgvsc: ENST00000394378.2:c.372-46_372-40delGTATAAT
  variant of: http://identifiers.org/hgnc/557
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3556
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6933
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2325
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2701
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5228
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9447
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8443
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7973
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3721
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2363
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1492
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 737
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3975
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1086
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4887
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: GATTATAC
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

17-35945588-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35945588
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 35945588
    reference: chr 17
allele count: 2
allele frequency: 1.712035610340695e-5
allele num: 116820
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000468371
  ensembl transcript: ENST00000591288
  gene symbol: SYNRG
  hgvsc: ENST00000591288.1:c.372-50C>T
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000343610
  ensembl transcript: ENST00000339208
  gene symbol: SYNRG
  hgvsc: ENST00000339208.6:c.372-50C>T
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000378189
  gene symbol: SYNRG
  hgvsc: ENST00000378189.1:n.880-50C>T
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000377903
  ensembl transcript: ENST00000394378
  gene symbol: SYNRG
  hgvsc: ENST00000394378.2:c.372-50C>T
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466456
  ensembl transcript: ENST00000585689
  gene symbol: SYNRG
  hgvsc: ENST00000585689.1:c.288-50C>T
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000315722
  ensembl transcript: ENST00000345615
  gene symbol: SYNRG
  hgvsc: ENST00000345615.4:c.372-50C>T
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000424893
  ensembl transcript: ENST00000502449
  gene symbol: SYNRG
  hgvsc: ENST00000502449.2:c.372-50C>T
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000005279
  ensembl transcript: ENST00000346661
  gene symbol: SYNRG
  hgvsc: ENST00000346661.4:c.372-50C>T
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466741
  ensembl transcript: ENST00000585472
  gene symbol: SYNRG
  hgvsc: ENST00000585472.1:c.369-50C>T
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000394379
  gene symbol: SYNRG
  hgvsc: ENST00000394379.3:n.455-50C>T
  variant of: http://identifiers.org/hgnc/557
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2093
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3555
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8012
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3188
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8227
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1519
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6050
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2324
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1492
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6753
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5218
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6893
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4252
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 625
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1555
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 785
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum

17-35946477-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35946477
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 35946477
    reference: chr 17
allele count: 198
allele frequency: 1.643399013960592e-3
allele num: 120482
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000468371
  ensembl transcript: ENST00000591288
  gene symbol: SYNRG
  hgvsc: ENST00000591288.1:c.371+50A>G
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466741
  ensembl transcript: ENST00000585472
  gene symbol: SYNRG
  hgvsc: ENST00000585472.1:c.368+50A>G
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466456
  ensembl transcript: ENST00000585689
  gene symbol: SYNRG
  hgvsc: ENST00000585689.1:c.287+50A>G
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000394379
  gene symbol: SYNRG
  hgvsc: ENST00000394379.3:n.454+50A>G
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000343610
  ensembl transcript: ENST00000339208
  gene symbol: SYNRG
  hgvsc: ENST00000339208.6:c.371+50A>G
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000005279
  ensembl transcript: ENST00000346661
  gene symbol: SYNRG
  hgvsc: ENST00000346661.4:c.371+50A>G
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000315722
  ensembl transcript: ENST00000345615
  gene symbol: SYNRG
  hgvsc: ENST00000345615.4:c.371+50A>G
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000377903
  ensembl transcript: ENST00000394378
  gene symbol: SYNRG
  hgvsc: ENST00000394378.2:c.371+50A>G
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000378189
  gene symbol: SYNRG
  hgvsc: ENST00000378189.1:n.879+50A>G
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000424893
  ensembl transcript: ENST00000502449
  gene symbol: SYNRG
  hgvsc: ENST00000502449.2:c.371+50A>G
  variant of: http://identifiers.org/hgnc/557
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9892
  bin: 3.25e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 11246
  bin: 2.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2207
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6288
  bin: 3.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2088
  bin: 4.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 12947
  bin: 2.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 3479
  bin: 4.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 6281
  bin: 1.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 5.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 15774
  bin: 9.75e1
  variant carriers: 194
genotype quality: GenotypeQuality
  all individuals: 2596
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 998
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 2
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: African
reference allele: T
site quality: FS
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

17-35946484-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35946484
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 35946484
    reference: chr 17
allele count: 1
allele frequency: 8.28953694646617e-6
allele num: 120634
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466741
  ensembl transcript: ENST00000585472
  gene symbol: SYNRG
  hgvsc: ENST00000585472.1:c.368+43A>G
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000005279
  ensembl transcript: ENST00000346661
  gene symbol: SYNRG
  hgvsc: ENST00000346661.4:c.371+43A>G
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000343610
  ensembl transcript: ENST00000339208
  gene symbol: SYNRG
  hgvsc: ENST00000339208.6:c.371+43A>G
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000377903
  ensembl transcript: ENST00000394378
  gene symbol: SYNRG
  hgvsc: ENST00000394378.2:c.371+43A>G
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000378189
  gene symbol: SYNRG
  hgvsc: ENST00000378189.1:n.879+43A>G
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000315722
  ensembl transcript: ENST00000345615
  gene symbol: SYNRG
  hgvsc: ENST00000345615.4:c.371+43A>G
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000394379
  gene symbol: SYNRG
  hgvsc: ENST00000394379.3:n.454+43A>G
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000424893
  ensembl transcript: ENST00000502449
  gene symbol: SYNRG
  hgvsc: ENST00000502449.2:c.371+43A>G
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000468371
  ensembl transcript: ENST00000591288
  gene symbol: SYNRG
  hgvsc: ENST00000591288.1:c.371+43A>G
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466456
  ensembl transcript: ENST00000585689
  gene symbol: SYNRG
  hgvsc: ENST00000585689.1:c.287+43A>G
  variant of: http://identifiers.org/hgnc/557
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3484
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3131
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13372
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6344
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2097
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1997
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13644
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10379
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1368
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: T
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: FS

17-35946492-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35946492
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 35946492
    reference: chr 17
allele count: 1
allele frequency: 8.280202036929701e-6
allele num: 120770
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000378189
  gene symbol: SYNRG
  hgvsc: ENST00000378189.1:n.879+35T>C
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000394379
  gene symbol: SYNRG
  hgvsc: ENST00000394379.3:n.454+35T>C
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000005279
  ensembl transcript: ENST00000346661
  gene symbol: SYNRG
  hgvsc: ENST00000346661.4:c.371+35T>C
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000315722
  ensembl transcript: ENST00000345615
  gene symbol: SYNRG
  hgvsc: ENST00000345615.4:c.371+35T>C
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000468371
  ensembl transcript: ENST00000591288
  gene symbol: SYNRG
  hgvsc: ENST00000591288.1:c.371+35T>C
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000424893
  ensembl transcript: ENST00000502449
  gene symbol: SYNRG
  hgvsc: ENST00000502449.2:c.371+35T>C
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000343610
  ensembl transcript: ENST00000339208
  gene symbol: SYNRG
  hgvsc: ENST00000339208.6:c.371+35T>C
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466456
  ensembl transcript: ENST00000585689
  gene symbol: SYNRG
  hgvsc: ENST00000585689.1:c.287+35T>C
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000377903
  ensembl transcript: ENST00000394378
  gene symbol: SYNRG
  hgvsc: ENST00000394378.2:c.371+35T>C
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466741
  ensembl transcript: ENST00000585472
  gene symbol: SYNRG
  hgvsc: ENST00000585472.1:c.368+35T>C
  variant of: http://identifiers.org/hgnc/557
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2107
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15235
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10882
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1293
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3506
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13928
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6426
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 770
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: A
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD

http://identifiers.org/exac.variant/17-35946494-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35946494
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 35946494
    reference: chr 17
allele count: 1793
allele frequency: 1.484640225221495e-2
allele num: 120770
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000005279
  ensembl transcript: ENST00000346661
  gene symbol: SYNRG
  hgvsc: ENST00000346661.4:c.371+33G>T
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000468371
  ensembl transcript: ENST00000591288
  gene symbol: SYNRG
  hgvsc: ENST00000591288.1:c.371+33G>T
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000343610
  ensembl transcript: ENST00000339208
  gene symbol: SYNRG
  hgvsc: ENST00000339208.6:c.371+33G>T
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000394379
  gene symbol: SYNRG
  hgvsc: ENST00000394379.3:n.454+33G>T
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000315722
  ensembl transcript: ENST00000345615
  gene symbol: SYNRG
  hgvsc: ENST00000345615.4:c.371+33G>T
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000378189
  gene symbol: SYNRG
  hgvsc: ENST00000378189.1:n.879+33G>T
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000424893
  ensembl transcript: ENST00000502449
  gene symbol: SYNRG
  hgvsc: ENST00000502449.2:c.371+33G>T
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000377903
  ensembl transcript: ENST00000394378
  gene symbol: SYNRG
  hgvsc: ENST00000394378.2:c.371+33G>T
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466456
  ensembl transcript: ENST00000585689
  gene symbol: SYNRG
  hgvsc: ENST00000585689.1:c.287+33G>T
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466741
  ensembl transcript: ENST00000585472
  gene symbol: SYNRG
  hgvsc: ENST00000585472.1:c.368+33G>T
  variant of: http://identifiers.org/hgnc/557
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2187
  bin: 4.75e1
  variant carriers: 154
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 5.25e1
  variant carriers: 124
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 5.75e1
  variant carriers: 92
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 6.25e1
  variant carriers: 72
genotype depth: GenotypeDepth
  all individuals: 13910
  bin: 2.75e1
  variant carriers: 154
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 8.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 6500
  bin: 3.75e1
  variant carriers: 220
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 7.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 1.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 10933
  bin: 3.25e1
  variant carriers: 220
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 8.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 6.75e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 7.25e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 9.75e1
  variant carriers: 170
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 9.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 3578
  bin: 4.25e1
  variant carriers: 184
genotype depth: GenotypeDepth
  all individuals: 15073
  bin: 2.25e1
  variant carriers: 74
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 539
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 4.75e1
  variant carriers: 3
num of homozygotes: 119
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: European (Finnish)
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff

17-35946497-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35946497
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 35946496
    reference: chr 17
allele count: 1
allele frequency: 8.273077750384698e-6
allele num: 120874
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000394379
  gene symbol: SYNRG
  hgvsc: ENST00000394379.3:n.454+29delC
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000343610
  ensembl transcript: ENST00000339208
  gene symbol: SYNRG
  hgvsc: ENST00000339208.6:c.371+29delC
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000377903
  ensembl transcript: ENST00000394378
  gene symbol: SYNRG
  hgvsc: ENST00000394378.2:c.371+29delC
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000005279
  ensembl transcript: ENST00000346661
  gene symbol: SYNRG
  hgvsc: ENST00000346661.4:c.371+29delC
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466741
  ensembl transcript: ENST00000585472
  gene symbol: SYNRG
  hgvsc: ENST00000585472.1:c.368+29delC
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000424893
  ensembl transcript: ENST00000502449
  gene symbol: SYNRG
  hgvsc: ENST00000502449.2:c.371+29delC
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000468371
  ensembl transcript: ENST00000591288
  gene symbol: SYNRG
  hgvsc: ENST00000591288.1:c.371+29delC
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466456
  ensembl transcript: ENST00000585689
  gene symbol: SYNRG
  hgvsc: ENST00000585689.1:c.287+29delC
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000378189
  gene symbol: SYNRG
  hgvsc: ENST00000378189.1:n.879+29delC
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000315722
  ensembl transcript: ENST00000345615
  gene symbol: SYNRG
  hgvsc: ENST00000345615.4:c.371+29delC
  variant of: http://identifiers.org/hgnc/557
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15408
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11093
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14119
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1431
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3585
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2190
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6537
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16041
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: Other
reference allele: TG
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD

17-35946498-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35946498
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 35946498
    reference: chr 17
allele count: 1
allele frequency: 8.272667107875579e-6
allele num: 120880
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000378189
  gene symbol: SYNRG
  hgvsc: ENST00000378189.1:n.879+29C>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000377903
  ensembl transcript: ENST00000394378
  gene symbol: SYNRG
  hgvsc: ENST00000394378.2:c.371+29C>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000315722
  ensembl transcript: ENST00000345615
  gene symbol: SYNRG
  hgvsc: ENST00000345615.4:c.371+29C>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466456
  ensembl transcript: ENST00000585689
  gene symbol: SYNRG
  hgvsc: ENST00000585689.1:c.287+29C>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000394379
  gene symbol: SYNRG
  hgvsc: ENST00000394379.3:n.454+29C>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000424893
  ensembl transcript: ENST00000502449
  gene symbol: SYNRG
  hgvsc: ENST00000502449.2:c.371+29C>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000343610
  ensembl transcript: ENST00000339208
  gene symbol: SYNRG
  hgvsc: ENST00000339208.6:c.371+29C>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466741
  ensembl transcript: ENST00000585472
  gene symbol: SYNRG
  hgvsc: ENST00000585472.1:c.368+29C>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000468371
  ensembl transcript: ENST00000591288
  gene symbol: SYNRG
  hgvsc: ENST00000591288.1:c.371+29C>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000005279
  ensembl transcript: ENST00000346661
  gene symbol: SYNRG
  hgvsc: ENST00000346661.4:c.371+29C>A
  variant of: http://identifiers.org/hgnc/557
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2194
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15465
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11151
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14171
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1431
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6558
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3594
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3379
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3545
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP

17-35946500-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35946500
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 35946500
    reference: chr 17
allele count: 1
allele frequency: 8.268562923763849e-6
allele num: 120940
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000315722
  ensembl transcript: ENST00000345615
  gene symbol: SYNRG
  hgvsc: ENST00000345615.4:c.371+27A>G
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466741
  ensembl transcript: ENST00000585472
  gene symbol: SYNRG
  hgvsc: ENST00000585472.1:c.368+27A>G
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000468371
  ensembl transcript: ENST00000591288
  gene symbol: SYNRG
  hgvsc: ENST00000591288.1:c.371+27A>G
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466456
  ensembl transcript: ENST00000585689
  gene symbol: SYNRG
  hgvsc: ENST00000585689.1:c.287+27A>G
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000005279
  ensembl transcript: ENST00000346661
  gene symbol: SYNRG
  hgvsc: ENST00000346661.4:c.371+27A>G
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000343610
  ensembl transcript: ENST00000339208
  gene symbol: SYNRG
  hgvsc: ENST00000339208.6:c.371+27A>G
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000377903
  ensembl transcript: ENST00000394378
  gene symbol: SYNRG
  hgvsc: ENST00000394378.2:c.371+27A>G
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000394379
  gene symbol: SYNRG
  hgvsc: ENST00000394379.3:n.454+27A>G
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000424893
  ensembl transcript: ENST00000502449
  gene symbol: SYNRG
  hgvsc: ENST00000502449.2:c.371+27A>G
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000378189
  gene symbol: SYNRG
  hgvsc: ENST00000378189.1:n.879+27A>G
  variant of: http://identifiers.org/hgnc/557
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6573
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14209
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11226
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3601
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15661
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2201
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4832
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6771
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQRankSum

17-35946503-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35946503
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 35946503
    reference: chr 17
allele count: 1
allele frequency: 8.263916435277007e-6
allele num: 121008
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000377903
  ensembl transcript: ENST00000394378
  gene symbol: SYNRG
  hgvsc: ENST00000394378.2:c.371+24G>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466456
  ensembl transcript: ENST00000585689
  gene symbol: SYNRG
  hgvsc: ENST00000585689.1:c.287+24G>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000378189
  gene symbol: SYNRG
  hgvsc: ENST00000378189.1:n.879+24G>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000005279
  ensembl transcript: ENST00000346661
  gene symbol: SYNRG
  hgvsc: ENST00000346661.4:c.371+24G>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466741
  ensembl transcript: ENST00000585472
  gene symbol: SYNRG
  hgvsc: ENST00000585472.1:c.368+24G>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000343610
  ensembl transcript: ENST00000339208
  gene symbol: SYNRG
  hgvsc: ENST00000339208.6:c.371+24G>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000315722
  ensembl transcript: ENST00000345615
  gene symbol: SYNRG
  hgvsc: ENST00000345615.4:c.371+24G>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000424893
  ensembl transcript: ENST00000502449
  gene symbol: SYNRG
  hgvsc: ENST00000502449.2:c.371+24G>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000468371
  ensembl transcript: ENST00000591288
  gene symbol: SYNRG
  hgvsc: ENST00000591288.1:c.371+24G>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000394379
  gene symbol: SYNRG
  hgvsc: ENST00000394379.3:n.454+24G>A
  variant of: http://identifiers.org/hgnc/557
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14302
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1433
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11341
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15747
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2205
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6615
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3607
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16999
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4845
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum

17-35946510-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35946510
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 35946510
    reference: chr 17
allele count: 27
allele frequency: 2.228200769141895e-4
allele num: 121174
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466456
  ensembl transcript: ENST00000585689
  gene symbol: SYNRG
  hgvsc: ENST00000585689.1:c.287+17A>G
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000377903
  ensembl transcript: ENST00000394378
  gene symbol: SYNRG
  hgvsc: ENST00000394378.2:c.371+17A>G
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000378189
  gene symbol: SYNRG
  hgvsc: ENST00000378189.1:n.879+17A>G
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000343610
  ensembl transcript: ENST00000339208
  gene symbol: SYNRG
  hgvsc: ENST00000339208.6:c.371+17A>G
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466741
  ensembl transcript: ENST00000585472
  gene symbol: SYNRG
  hgvsc: ENST00000585472.1:c.368+17A>G
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000315722
  ensembl transcript: ENST00000345615
  gene symbol: SYNRG
  hgvsc: ENST00000345615.4:c.371+17A>G
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000424893
  ensembl transcript: ENST00000502449
  gene symbol: SYNRG
  hgvsc: ENST00000502449.2:c.371+17A>G
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000005279
  ensembl transcript: ENST00000346661
  gene symbol: SYNRG
  hgvsc: ENST00000346661.4:c.371+17A>G
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000468371
  ensembl transcript: ENST00000591288
  gene symbol: SYNRG
  hgvsc: ENST00000591288.1:c.371+17A>G
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000394379
  gene symbol: SYNRG
  hgvsc: ENST00000394379.3:n.454+17A>G
  variant of: http://identifiers.org/hgnc/557
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11472
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6646
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15802
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14434
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3640
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1436
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2222
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4901
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5424
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: African
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: QD

17-35946515-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35946515
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 35946515
    reference: chr 17
allele count: 3
allele frequency: 2.474512521033356e-5
allele num: 121236
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000468371
  ensembl transcript: ENST00000591288
  gene symbol: SYNRG
  hgvsc: ENST00000591288.1:c.371+12C>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000394379
  gene symbol: SYNRG
  hgvsc: ENST00000394379.3:n.454+12C>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000315722
  ensembl transcript: ENST00000345615
  gene symbol: SYNRG
  hgvsc: ENST00000345615.4:c.371+12C>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000377903
  ensembl transcript: ENST00000394378
  gene symbol: SYNRG
  hgvsc: ENST00000394378.2:c.371+12C>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000424893
  ensembl transcript: ENST00000502449
  gene symbol: SYNRG
  hgvsc: ENST00000502449.2:c.371+12C>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466456
  ensembl transcript: ENST00000585689
  gene symbol: SYNRG
  hgvsc: ENST00000585689.1:c.287+12C>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000343610
  ensembl transcript: ENST00000339208
  gene symbol: SYNRG
  hgvsc: ENST00000339208.6:c.371+12C>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000005279
  ensembl transcript: ENST00000346661
  gene symbol: SYNRG
  hgvsc: ENST00000346661.4:c.371+12C>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000378189
  gene symbol: SYNRG
  hgvsc: ENST00000378189.1:n.879+12C>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466741
  ensembl transcript: ENST00000585472
  gene symbol: SYNRG
  hgvsc: ENST00000585472.1:c.368+12C>A
  variant of: http://identifiers.org/hgnc/557
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15771
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11535
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6666
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3653
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1439
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14498
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2229
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17440
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6908
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

17-35946527-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35946527
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 35946527
    reference: chr 17
allele count: 2
allele frequency: 1.648641519388024e-5
allele num: 121312
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466741
  ensembl transcript: ENST00000585472
  gene symbol: SYNRG
  hgvsc: ENST00000585472.1:c.368A>G
  hgvsp: ENSP00000466741.1:p.Gln123Arg
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000468371
  ensembl transcript: ENST00000591288
  gene symbol: SYNRG
  hgvsc: ENST00000591288.1:c.371A>G
  hgvsp: ENSP00000468371.1:p.Gln124Arg
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000005279
  ensembl transcript: ENST00000346661
  gene symbol: SYNRG
  hgvsc: ENST00000346661.4:c.371A>G
  hgvsp: ENSP00000005279.4:p.Gln124Arg
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000378189
  gene symbol: SYNRG
  hgvsc: ENST00000378189.1:n.879A>G
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000424893
  ensembl transcript: ENST00000502449
  gene symbol: SYNRG
  hgvsc: ENST00000502449.2:c.371A>G
  hgvsp: ENSP00000424893.2:p.Gln124Arg
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000377903
  ensembl transcript: ENST00000394378
  gene symbol: SYNRG
  hgvsc: ENST00000394378.2:c.371A>G
  hgvsp: ENSP00000377903.2:p.Gln124Arg
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000343610
  ensembl transcript: ENST00000339208
  gene symbol: SYNRG
  hgvsc: ENST00000339208.6:c.371A>G
  hgvsp: ENSP00000343610.6:p.Gln124Arg
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466456
  ensembl transcript: ENST00000585689
  gene symbol: SYNRG
  hgvsc: ENST00000585689.1:c.287A>G
  hgvsp: ENSP00000466456.1:p.Gln96Arg
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000394379
  gene symbol: SYNRG
  hgvsc: ENST00000394379.3:n.454A>G
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000315722
  ensembl transcript: ENST00000345615
  gene symbol: SYNRG
  hgvsc: ENST00000345615.4:c.371A>G
  hgvsp: ENSP00000315722.5:p.Gln124Arg
  variant of: http://identifiers.org/hgnc/557
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3652
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15699
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2230
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1441
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14616
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11603
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6676
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln124Arg
num of homozygotes: 0
population: Latino
population: Other
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP

17-35946537-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35946537
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 35946537
    reference: chr 17
allele count: 7
allele frequency: 5.768533473975673e-5
allele num: 121348
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000377903
  ensembl transcript: ENST00000394378
  gene symbol: SYNRG
  hgvsc: ENST00000394378.2:c.361G>A
  hgvsp: ENSP00000377903.2:p.Glu121Lys
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000378189
  gene symbol: SYNRG
  hgvsc: ENST00000378189.1:n.869G>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466741
  ensembl transcript: ENST00000585472
  gene symbol: SYNRG
  hgvsc: ENST00000585472.1:c.358G>A
  hgvsp: ENSP00000466741.1:p.Glu120Lys
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466456
  ensembl transcript: ENST00000585689
  gene symbol: SYNRG
  hgvsc: ENST00000585689.1:c.277G>A
  hgvsp: ENSP00000466456.1:p.Glu93Lys
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000394379
  gene symbol: SYNRG
  hgvsc: ENST00000394379.3:n.444G>A
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000343610
  ensembl transcript: ENST00000339208
  gene symbol: SYNRG
  hgvsc: ENST00000339208.6:c.361G>A
  hgvsp: ENSP00000343610.6:p.Glu121Lys
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000005279
  ensembl transcript: ENST00000346661
  gene symbol: SYNRG
  hgvsc: ENST00000346661.4:c.361G>A
  hgvsp: ENSP00000005279.4:p.Glu121Lys
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000468371
  ensembl transcript: ENST00000591288
  gene symbol: SYNRG
  hgvsc: ENST00000591288.1:c.361G>A
  hgvsp: ENSP00000468371.1:p.Glu121Lys
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000424893
  ensembl transcript: ENST00000502449
  gene symbol: SYNRG
  hgvsc: ENST00000502449.2:c.361G>A
  hgvsp: ENSP00000424893.2:p.Glu121Lys
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000315722
  ensembl transcript: ENST00000345615
  gene symbol: SYNRG
  hgvsc: ENST00000345615.4:c.361G>A
  hgvsp: ENSP00000315722.5:p.Glu121Lys
  variant of: http://identifiers.org/hgnc/557
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15653
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3661
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14655
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6681
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2236
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1442
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11621
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2392
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Glu121Lys
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP

17-35946538-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35946538
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 35946538
    reference: chr 17
allele count: 17
allele frequency: 1.400952647800504e-4
allele num: 121346
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000343610
  ensembl transcript: ENST00000339208
  gene symbol: SYNRG
  hgvsc: ENST00000339208.6:c.360C>T
  hgvsp: ENST00000339208.6:c.360C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000424893
  ensembl transcript: ENST00000502449
  gene symbol: SYNRG
  hgvsc: ENST00000502449.2:c.360C>T
  hgvsp: ENST00000502449.2:c.360C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000315722
  ensembl transcript: ENST00000345615
  gene symbol: SYNRG
  hgvsc: ENST00000345615.4:c.360C>T
  hgvsp: ENST00000345615.4:c.360C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000378189
  gene symbol: SYNRG
  hgvsc: ENST00000378189.1:n.868C>T
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466741
  ensembl transcript: ENST00000585472
  gene symbol: SYNRG
  hgvsc: ENST00000585472.1:c.357C>T
  hgvsp: ENST00000585472.1:c.357C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466456
  ensembl transcript: ENST00000585689
  gene symbol: SYNRG
  hgvsc: ENST00000585689.1:c.276C>T
  hgvsp: ENST00000585689.1:c.276C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000468371
  ensembl transcript: ENST00000591288
  gene symbol: SYNRG
  hgvsc: ENST00000591288.1:c.360C>T
  hgvsp: ENST00000591288.1:c.360C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000005279
  ensembl transcript: ENST00000346661
  gene symbol: SYNRG
  hgvsc: ENST00000346661.4:c.360C>T
  hgvsp: ENST00000346661.4:c.360C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000377903
  ensembl transcript: ENST00000394378
  gene symbol: SYNRG
  hgvsc: ENST00000394378.2:c.360C>T
  hgvsp: ENST00000394378.2:c.360C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000394379
  gene symbol: SYNRG
  hgvsc: ENST00000394379.3:n.443C>T
  variant of: http://identifiers.org/hgnc/557
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14659
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15637
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6674
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3665
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11624
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2234
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1444
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala120Ala
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

17-35946555-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35946555
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 35946555
    reference: chr 17
allele count: 2
allele frequency: 1.647473599235572e-5
allele num: 121398
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000394379
  gene symbol: SYNRG
  hgvsc: ENST00000394379.3:n.426A>G
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000343610
  ensembl transcript: ENST00000339208
  gene symbol: SYNRG
  hgvsc: ENST00000339208.6:c.343A>G
  hgvsp: ENSP00000343610.6:p.Met115Val
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000377903
  ensembl transcript: ENST00000394378
  gene symbol: SYNRG
  hgvsc: ENST00000394378.2:c.343A>G
  hgvsp: ENSP00000377903.2:p.Met115Val
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000468371
  ensembl transcript: ENST00000591288
  gene symbol: SYNRG
  hgvsc: ENST00000591288.1:c.343A>G
  hgvsp: ENSP00000468371.1:p.Met115Val
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466741
  ensembl transcript: ENST00000585472
  gene symbol: SYNRG
  hgvsc: ENST00000585472.1:c.340A>G
  hgvsp: ENSP00000466741.1:p.Met114Val
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000005279
  ensembl transcript: ENST00000346661
  gene symbol: SYNRG
  hgvsc: ENST00000346661.4:c.343A>G
  hgvsp: ENSP00000005279.4:p.Met115Val
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000315722
  ensembl transcript: ENST00000345615
  gene symbol: SYNRG
  hgvsc: ENST00000345615.4:c.343A>G
  hgvsp: ENSP00000315722.5:p.Met115Val
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466456
  ensembl transcript: ENST00000585689
  gene symbol: SYNRG
  hgvsc: ENST00000585689.1:c.259A>G
  hgvsp: ENSP00000466456.1:p.Met87Val
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000424893
  ensembl transcript: ENST00000502449
  gene symbol: SYNRG
  hgvsc: ENST00000502449.2:c.343A>G
  hgvsp: ENSP00000424893.2:p.Met115Val
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000378189
  gene symbol: SYNRG
  hgvsc: ENST00000378189.1:n.851A>G
  variant of: http://identifiers.org/hgnc/557
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11631
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3666
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15619
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6687
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2234
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14699
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1443
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Met115Val
num of homozygotes: 0
population: Other
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

17-35946561-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35946561
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 35946561
    reference: chr 17
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000424893
  ensembl transcript: ENST00000502449
  gene symbol: SYNRG
  hgvsc: ENST00000502449.2:c.337C>G
  hgvsp: ENSP00000424893.2:p.Pro113Ala
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000005279
  ensembl transcript: ENST00000346661
  gene symbol: SYNRG
  hgvsc: ENST00000346661.4:c.337C>G
  hgvsp: ENSP00000005279.4:p.Pro113Ala
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000343610
  ensembl transcript: ENST00000339208
  gene symbol: SYNRG
  hgvsc: ENST00000339208.6:c.337C>G
  hgvsp: ENSP00000343610.6:p.Pro113Ala
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000468371
  ensembl transcript: ENST00000591288
  gene symbol: SYNRG
  hgvsc: ENST00000591288.1:c.337C>G
  hgvsp: ENSP00000468371.1:p.Pro113Ala
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466741
  ensembl transcript: ENST00000585472
  gene symbol: SYNRG
  hgvsc: ENST00000585472.1:c.334C>G
  hgvsp: ENSP00000466741.1:p.Pro112Ala
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000377903
  ensembl transcript: ENST00000394378
  gene symbol: SYNRG
  hgvsc: ENST00000394378.2:c.337C>G
  hgvsp: ENSP00000377903.2:p.Pro113Ala
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466456
  ensembl transcript: ENST00000585689
  gene symbol: SYNRG
  hgvsc: ENST00000585689.1:c.253C>G
  hgvsp: ENSP00000466456.1:p.Pro85Ala
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000378189
  gene symbol: SYNRG
  hgvsc: ENST00000378189.1:n.845C>G
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000315722
  ensembl transcript: ENST00000345615
  gene symbol: SYNRG
  hgvsc: ENST00000345615.4:c.337C>G
  hgvsp: ENSP00000315722.5:p.Pro113Ala
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000394379
  gene symbol: SYNRG
  hgvsc: ENST00000394379.3:n.420C>G
  variant of: http://identifiers.org/hgnc/557
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15613
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3664
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2234
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6688
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14703
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1443
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11637
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3520
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro113Ala
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ

17-35946564-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35946564
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 35946564
    reference: chr 17
allele count: 3
allele frequency: 2.471088267272907e-5
allele num: 121404
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000005279
  ensembl transcript: ENST00000346661
  gene symbol: SYNRG
  hgvsc: ENST00000346661.4:c.334A>C
  hgvsp: ENSP00000005279.4:p.Thr112Pro
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000377903
  ensembl transcript: ENST00000394378
  gene symbol: SYNRG
  hgvsc: ENST00000394378.2:c.334A>C
  hgvsp: ENSP00000377903.2:p.Thr112Pro
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466456
  ensembl transcript: ENST00000585689
  gene symbol: SYNRG
  hgvsc: ENST00000585689.1:c.250A>C
  hgvsp: ENSP00000466456.1:p.Thr84Pro
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000394379
  gene symbol: SYNRG
  hgvsc: ENST00000394379.3:n.417A>C
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000343610
  ensembl transcript: ENST00000339208
  gene symbol: SYNRG
  hgvsc: ENST00000339208.6:c.334A>C
  hgvsp: ENSP00000343610.6:p.Thr112Pro
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000378189
  gene symbol: SYNRG
  hgvsc: ENST00000378189.1:n.842A>C
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000424893
  ensembl transcript: ENST00000502449
  gene symbol: SYNRG
  hgvsc: ENST00000502449.2:c.334A>C
  hgvsp: ENSP00000424893.2:p.Thr112Pro
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000315722
  ensembl transcript: ENST00000345615
  gene symbol: SYNRG
  hgvsc: ENST00000345615.4:c.334A>C
  hgvsp: ENSP00000315722.5:p.Thr112Pro
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000468371
  ensembl transcript: ENST00000591288
  gene symbol: SYNRG
  hgvsc: ENST00000591288.1:c.334A>C
  hgvsp: ENSP00000468371.1:p.Thr112Pro
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466741
  ensembl transcript: ENST00000585472
  gene symbol: SYNRG
  hgvsc: ENST00000585472.1:c.331A>C
  hgvsp: ENSP00000466741.1:p.Thr111Pro
  variant of: http://identifiers.org/hgnc/557
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6689
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2234
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14706
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15610
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1443
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11636
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3664
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Thr112Pro
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ

17-35946569-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35946569
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 35946569
    reference: chr 17
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000377903
  ensembl transcript: ENST00000394378
  gene symbol: SYNRG
  hgvsc: ENST00000394378.2:c.329A>T
  hgvsp: ENSP00000377903.2:p.Gln110Leu
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000468371
  ensembl transcript: ENST00000591288
  gene symbol: SYNRG
  hgvsc: ENST00000591288.1:c.329A>T
  hgvsp: ENSP00000468371.1:p.Gln110Leu
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000315722
  ensembl transcript: ENST00000345615
  gene symbol: SYNRG
  hgvsc: ENST00000345615.4:c.329A>T
  hgvsp: ENSP00000315722.5:p.Gln110Leu
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466741
  ensembl transcript: ENST00000585472
  gene symbol: SYNRG
  hgvsc: ENST00000585472.1:c.326A>T
  hgvsp: ENSP00000466741.1:p.Gln109Leu
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000394379
  gene symbol: SYNRG
  hgvsc: ENST00000394379.3:n.412A>T
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466456
  ensembl transcript: ENST00000585689
  gene symbol: SYNRG
  hgvsc: ENST00000585689.1:c.245A>T
  hgvsp: ENSP00000466456.1:p.Gln82Leu
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000343610
  ensembl transcript: ENST00000339208
  gene symbol: SYNRG
  hgvsc: ENST00000339208.6:c.329A>T
  hgvsp: ENSP00000343610.6:p.Gln110Leu
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000424893
  ensembl transcript: ENST00000502449
  gene symbol: SYNRG
  hgvsc: ENST00000502449.2:c.329A>T
  hgvsp: ENSP00000424893.2:p.Gln110Leu
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000005279
  ensembl transcript: ENST00000346661
  gene symbol: SYNRG
  hgvsc: ENST00000346661.4:c.329A>T
  hgvsp: ENSP00000005279.4:p.Gln110Leu
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000378189
  gene symbol: SYNRG
  hgvsc: ENST00000378189.1:n.837A>T
  variant of: http://identifiers.org/hgnc/557
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2235
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1443
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15612
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14701
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3665
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6690
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11637
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3636
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gln110Leu
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ

17-35946572-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35946572
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 35946572
    reference: chr 17
allele count: 41
allele frequency: 3.377098331219215e-4
allele num: 121406
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000343610
  ensembl transcript: ENST00000339208
  gene symbol: SYNRG
  hgvsc: ENST00000339208.6:c.326C>G
  hgvsp: ENSP00000343610.6:p.Pro109Arg
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000394379
  gene symbol: SYNRG
  hgvsc: ENST00000394379.3:n.409C>G
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000005279
  ensembl transcript: ENST00000346661
  gene symbol: SYNRG
  hgvsc: ENST00000346661.4:c.326C>G
  hgvsp: ENSP00000005279.4:p.Pro109Arg
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000468371
  ensembl transcript: ENST00000591288
  gene symbol: SYNRG
  hgvsc: ENST00000591288.1:c.326C>G
  hgvsp: ENSP00000468371.1:p.Pro109Arg
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000377903
  ensembl transcript: ENST00000394378
  gene symbol: SYNRG
  hgvsc: ENST00000394378.2:c.326C>G
  hgvsp: ENSP00000377903.2:p.Pro109Arg
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466741
  ensembl transcript: ENST00000585472
  gene symbol: SYNRG
  hgvsc: ENST00000585472.1:c.323C>G
  hgvsp: ENSP00000466741.1:p.Pro108Arg
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466456
  ensembl transcript: ENST00000585689
  gene symbol: SYNRG
  hgvsc: ENST00000585689.1:c.242C>G
  hgvsp: ENSP00000466456.1:p.Pro81Arg
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000424893
  ensembl transcript: ENST00000502449
  gene symbol: SYNRG
  hgvsc: ENST00000502449.2:c.326C>G
  hgvsp: ENSP00000424893.2:p.Pro109Arg
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000315722
  ensembl transcript: ENST00000345615
  gene symbol: SYNRG
  hgvsc: ENST00000345615.4:c.326C>G
  hgvsp: ENSP00000315722.5:p.Pro109Arg
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000378189
  gene symbol: SYNRG
  hgvsc: ENST00000378189.1:n.834C>G
  variant of: http://identifiers.org/hgnc/557
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11631
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6684
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14692
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2235
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15599
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3664
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1443
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 9.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 6.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3633
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Pro109Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum

17-35946579-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35946579
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 35946579
    reference: chr 17
allele count: 2
allele frequency: 1.647310765175851e-5
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000468371
  ensembl transcript: ENST00000591288
  gene symbol: SYNRG
  hgvsc: ENST00000591288.1:c.319C>G
  hgvsp: ENSP00000468371.1:p.Pro107Ala
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466741
  ensembl transcript: ENST00000585472
  gene symbol: SYNRG
  hgvsc: ENST00000585472.1:c.316C>G
  hgvsp: ENSP00000466741.1:p.Pro106Ala
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000424893
  ensembl transcript: ENST00000502449
  gene symbol: SYNRG
  hgvsc: ENST00000502449.2:c.319C>G
  hgvsp: ENSP00000424893.2:p.Pro107Ala
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000377903
  ensembl transcript: ENST00000394378
  gene symbol: SYNRG
  hgvsc: ENST00000394378.2:c.319C>G
  hgvsp: ENSP00000377903.2:p.Pro107Ala
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466456
  ensembl transcript: ENST00000585689
  gene symbol: SYNRG
  hgvsc: ENST00000585689.1:c.235C>G
  hgvsp: ENSP00000466456.1:p.Pro79Ala
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000315722
  ensembl transcript: ENST00000345615
  gene symbol: SYNRG
  hgvsc: ENST00000345615.4:c.319C>G
  hgvsp: ENSP00000315722.5:p.Pro107Ala
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000394379
  gene symbol: SYNRG
  hgvsc: ENST00000394379.3:n.402C>G
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000343610
  ensembl transcript: ENST00000339208
  gene symbol: SYNRG
  hgvsc: ENST00000339208.6:c.319C>G
  hgvsp: ENSP00000343610.6:p.Pro107Ala
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000005279
  ensembl transcript: ENST00000346661
  gene symbol: SYNRG
  hgvsc: ENST00000346661.4:c.319C>G
  hgvsp: ENSP00000005279.4:p.Pro107Ala
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000378189
  gene symbol: SYNRG
  hgvsc: ENST00000378189.1:n.827C>G
  variant of: http://identifiers.org/hgnc/557
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14696
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2240
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11632
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3667
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15599
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1446
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6689
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Pro107Ala
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum

17-35946581-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35946581
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 35946581
    reference: chr 17
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000424893
  ensembl transcript: ENST00000502449
  gene symbol: SYNRG
  hgvsc: ENST00000502449.2:c.317C>T
  hgvsp: ENSP00000424893.2:p.Pro106Leu
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000343610
  ensembl transcript: ENST00000339208
  gene symbol: SYNRG
  hgvsc: ENST00000339208.6:c.317C>T
  hgvsp: ENSP00000343610.6:p.Pro106Leu
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000394379
  gene symbol: SYNRG
  hgvsc: ENST00000394379.3:n.400C>T
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000377903
  ensembl transcript: ENST00000394378
  gene symbol: SYNRG
  hgvsc: ENST00000394378.2:c.317C>T
  hgvsp: ENSP00000377903.2:p.Pro106Leu
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000468371
  ensembl transcript: ENST00000591288
  gene symbol: SYNRG
  hgvsc: ENST00000591288.1:c.317C>T
  hgvsp: ENSP00000468371.1:p.Pro106Leu
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466741
  ensembl transcript: ENST00000585472
  gene symbol: SYNRG
  hgvsc: ENST00000585472.1:c.314C>T
  hgvsp: ENSP00000466741.1:p.Pro105Leu
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000006114
  ensembl transcript: ENST00000378189
  gene symbol: SYNRG
  hgvsc: ENST00000378189.1:n.825C>T
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000005279
  ensembl transcript: ENST00000346661
  gene symbol: SYNRG
  hgvsc: ENST00000346661.4:c.317C>T
  hgvsp: ENSP00000005279.4:p.Pro106Leu
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000315722
  ensembl transcript: ENST00000345615
  gene symbol: SYNRG
  hgvsc: ENST00000345615.4:c.317C>T
  hgvsp: ENSP00000315722.5:p.Pro106Leu
  variant of: http://identifiers.org/hgnc/557
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000006114
  ensembl protein: ENSP00000466456
  ensembl transcript: ENST00000585689
  gene symbol: SYNRG
  hgvsc: ENST00000585689.1:c.233C>T
  hgvsp: ENSP00000466456.1:p.Pro78Leu
  variant of: http://identifiers.org/hgnc/557
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6690
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2239
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11635
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1446
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14692
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3668
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15597
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro106Leu
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 26
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 385
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1273
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5001
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 763
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 318
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48617
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 294
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1308
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16146
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506250941406838e-5
allele num: 66390
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.11e-1

QD
type: SiteQuality
SIO_000300: 1.582e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.99e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.89e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.52e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.689e0

DP
type: SiteQuality
SIO_000300: 1.515644e6

GenotypeQuality
all individuals: 764
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1280
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2282
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 163
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1318
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5057
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66536
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.21921482565228e-4
allele num: 16404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.56e-1

QD
type: SiteQuality
SIO_000300: 1.517e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.16e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 3.65e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.29e0

DP
type: SiteQuality
SIO_000300: 1.519583e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.07e-1

GenotypeQuality
all individuals: 110
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49067
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1316
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1274
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 761
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2280
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.076810889645114e-5
allele num: 16456
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.22e1

MQ
type: SiteQuality
SIO_000300: 5.951e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.8e-3

DP
type: SiteQuality
SIO_000300: 1.520909e6

BaseQRankSum
type: SiteQuality
SIO_000300: 5.03e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.204e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.39e0

VQSLOD
type: SiteQuality
SIO_000300: 9.11e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.29e-1

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49111
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1275
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2280
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 759
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 316
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5066
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1315
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66592
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.214181641573579e-4
allele num: 16472
num of homozygotes: 1

QD
type: SiteQuality
SIO_000300: 3.068e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.02e-2

DP
type: SiteQuality
SIO_000300: 1.52118e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.01e0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1270
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5064
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2513
bin: 9.75e1
variant carriers: 251

GenotypeQuality
all individuals: 49032
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 314
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 3
allele frequency: 3.311258278145695e-3
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 5.765904285988853e-4
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 4
allele frequency: 6.047777441790142e-4
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 23
allele frequency: 1.98789974070873e-3
allele num: 11570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 201
allele frequency: 3.016659162539397e-3
allele num: 66630
num of homozygotes: 0

South Asian
type: Population
allele count: 14
allele frequency: 8.488964346349745e-4
allele num: 16492
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.479e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.973e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.74e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.96e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.87e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.08e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.66e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.99e-1

DP
type: SiteQuality
SIO_000300: 1.541786e6

GenotypeDepth
all individuals: 177
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 760
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 321
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49221
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2307
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 6
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1284
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5109
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1311
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.466605038132656e-4
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66666
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.383e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.687e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.99e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.79e-1

MQ
type: SiteQuality
SIO_000300: 5.952e1

VQSLOD
type: SiteQuality
SIO_000300: 1.04e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.25e-2

FS
type: SiteQuality
SIO_000300: 1.317e0

DP
type: SiteQuality
SIO_000300: 1.525365e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.48e0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1285
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2307
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 9
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1311
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5111
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 296
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 760
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
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European (Non-Finnish)
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allele frequency: 1.499925003749813e-5
allele num: 66670
num of homozygotes: 0

Other
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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MQ
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FS
type: SiteQuality
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InbreedingCoeff
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BaseQRankSum
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SIO_000300: 2.08e-1

DP
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SIO_000300: 1.525061e6

VQSLOD
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele frequency: 0.0e0
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Latino
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Other
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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allele num: 16512
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East Asian
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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FS
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MQ
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QD
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DP
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele num: 10406
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Other
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66704
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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South Asian
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allele frequency: 3.634161114476075e-4
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
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DP
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InbreedingCoeff
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MQ
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FS
type: SiteQuality
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VQSLOD
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QD
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ClippingRankSum
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SIO_000300: -5.37e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 8.640055296353897e-5
allele num: 11574
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498935755613514e-5
allele num: 66714
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.04e-1

QD
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DP
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InbreedingCoeff
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SIO_000300: 0.0e0

FS
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BaseQRankSum
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MQ
type: SiteQuality
SIO_000300: 5.977e1

VQSLOD
type: SiteQuality
SIO_000300: 5.2e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.07e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.65e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66712
num of homozygotes: 0

South Asian
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allele count: 6
allele frequency: 3.634161114476075e-4
allele num: 16510
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.525962e6

ReadPosRankSum
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VQSLOD
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SIO_000300: 9.11e-1

QD
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InbreedingCoeff
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MQ
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ClippingRankSum
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FS
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MQRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66718
num of homozygotes: 0

Latino
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allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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ClippingRankSum
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FS
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DP
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BaseQRankSum
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QD
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InbreedingCoeff
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VQSLOD
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MQRankSum
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ReadPosRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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African
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Latino
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allele frequency: 1.728608470181504e-4
allele num: 11570
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66716
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East Asian
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Other
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VQSLOD
type: SiteQuality
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ReadPosRankSum
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MQ
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FS
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
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QD
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BaseQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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Latino
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allele frequency: 1.382886776145203e-3
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num of homozygotes: 0

Other
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South Asian
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European (Finnish)
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allele frequency: 2.57030541276081e-3
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 6.114924612571565e-3
allele num: 66722
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QD
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DP
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MQRankSum
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MQ
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BaseQRankSum
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ReadPosRankSum
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ClippingRankSum
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InbreedingCoeff
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FS
type: SiteQuality
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1271
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 286
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 5.777675063554426e-4
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66712
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.42e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.583e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.17e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-2

QD
type: SiteQuality
SIO_000300: 1.169e1

MQ
type: SiteQuality
SIO_000300: 5.966e1

VQSLOD
type: SiteQuality
SIO_000300: 2.19e0

FS
type: SiteQuality
SIO_000300: 1.114e0

DP
type: SiteQuality
SIO_000300: 1.530085e6

GenotypeQuality
all individuals: 44
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 34
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 3

GenotypeQuality
all individuals: 1265
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variant carriers: 2

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
all individuals: 2470
bin: 9.75e1
variant carriers: 69

GenotypeQuality
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bin: 4.75e1
variant carriers: 3

GenotypeQuality
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bin: 5.25e1
variant carriers: 3

GenotypeQuality
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bin: 6.75e1
variant carriers: 1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 2

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
all individuals: 48803
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 757
bin: 8.25e1
variant carriers: 5

European (Finnish)
type: Population
allele count: 79
allele frequency: 1.197332525007578e-2
allele num: 6598
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10344
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.201020867737577e-4
allele num: 66610
num of homozygotes: 0

Other
type: Population
allele count: 6
allele frequency: 6.63716814159292e-3
allele num: 904
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.952e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

FS
type: SiteQuality
SIO_000300: 2.93731e2

MQRankSum
type: SiteQuality
SIO_000300: 1.78e-1

QD
type: SiteQuality
SIO_000300: 8.5e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.927e2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.99e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.59e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.712e0

DP
type: SiteQuality
SIO_000300: 1.543032e6

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 2537
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.652509652509652e-5
allele num: 10360
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66596
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.11e0

VQSLOD
type: SiteQuality
SIO_000300: -3.777e0

MQRankSum
type: SiteQuality
SIO_000300: -3.906e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.324e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.396e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.609e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.21e-2

MQ
type: SiteQuality
SIO_000300: 5.582e1

DP
type: SiteQuality
SIO_000300: 1.53293e6

GenotypeQuality
all individuals: 26
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 228
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
all individuals: 329
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GenotypeQuality
all individuals: 25
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66594
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.652509652509652e-5
allele num: 10360
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.558e1

QD
type: SiteQuality
SIO_000300: 3.2e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.251e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.29e-2

VQSLOD
type: SiteQuality
SIO_000300: -4.714e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.021e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -3.83e0

DP
type: SiteQuality
SIO_000300: 1.532905e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.671e0

GenotypeDepth
all individuals: 112
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
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variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
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GenotypeQuality
all individuals: 11
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GenotypeQuality
all individuals: 2536
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 80
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GenotypeQuality
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GenotypeQuality
all individuals: 7
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GenotypeQuality
all individuals: 78
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GenotypeQuality
all individuals: 1259
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 10
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GenotypeQuality
all individuals: 48528
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GenotypeQuality
all individuals: 329
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10330
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503488092374308e-5
allele num: 66512
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.529791e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.11e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.357e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -3.06e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.45e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.42e0

QD
type: SiteQuality
SIO_000300: 1.331e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.65e-1

GenotypeQuality
all individuals: 48216
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 14
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GenotypeQuality
all individuals: 5
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GenotypeQuality
all individuals: 755
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 328
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GenotypeQuality
all individuals: 285
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GenotypeQuality
all individuals: 125
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10306
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16476
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506114826194349e-5
allele num: 66396
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.852e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -6.05e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.5e0

MQRankSum
type: SiteQuality
SIO_000300: -3.49e-1

DP
type: SiteQuality
SIO_000300: 1.526091e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQ
type: SiteQuality
SIO_000300: 5.964e1

QD
type: SiteQuality
SIO_000300: 1.226e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.554e0

GenotypeQuality
all individuals: 344
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1977
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variant carriers: 0

GenotypeQuality
all individuals: 80
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GenotypeQuality
all individuals: 128
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GenotypeQuality
all individuals: 750
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 632
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.516530178950561e-4
allele num: 6594
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.116071428571429e-3
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.520218911523259e-5
allele num: 65780
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11412
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8418
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
SIO_000300: 3.72e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.837e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

DP
type: SiteQuality
SIO_000300: 1.498486e6

MQRankSum
type: SiteQuality
SIO_000300: -2.74e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.04e0

QD
type: SiteQuality
SIO_000300: 1.199e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.35e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.761811792268645e-5
allele num: 10244
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8414
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11412
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65728
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16408
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.218e0

MQ
type: SiteQuality
SIO_000300: 6.184e1

VQSLOD
type: SiteQuality
SIO_000300: 5.15e-1

FS
type: SiteQuality
SIO_000300: 4.181e0

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

ClippingRankSum
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InbreedingCoeff
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QD
type: SiteQuality
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 65508
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Latino
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African
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Other
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European (Finnish)
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South Asian
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BaseQRankSum
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ReadPosRankSum
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ClippingRankSum
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DP
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FS
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MQ
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QD
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VQSLOD
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InbreedingCoeff
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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European (Non-Finnish)
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allele num: 64694
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South Asian
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African
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allele frequency: 0.0e0
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East Asian
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Other
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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MQRankSum
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ReadPosRankSum
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FS
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InbreedingCoeff
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MQ
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Latino
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East Asian
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South Asian
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African
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Other
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European (Non-Finnish)
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BaseQRankSum
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DP
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ReadPosRankSum
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MQRankSum
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QD
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InbreedingCoeff
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FS
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ClippingRankSum
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MQ
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Finnish)
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East Asian
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South Asian
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European (Non-Finnish)
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allele num: 66530
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African
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MQRankSum
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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FS
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MQ
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DP
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ReadPosRankSum
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QD
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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European (Non-Finnish)
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East Asian
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Other
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Latino
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South Asian
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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MQ
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ReadPosRankSum
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MQRankSum
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QD
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DP
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FS
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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European (Non-Finnish)
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African
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Latino
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Other
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South Asian
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QD
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MQRankSum
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MQ
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VQSLOD
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BaseQRankSum
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FS
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ReadPosRankSum
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ClippingRankSum
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InbreedingCoeff
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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Other
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African
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European (Non-Finnish)
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South Asian
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InbreedingCoeff
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MQRankSum
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QD
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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FS
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MQ
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DP
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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European (Non-Finnish)
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East Asian
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Latino
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African
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South Asian
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BaseQRankSum
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VQSLOD
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FS
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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DP
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MQ
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QD
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African
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European (Finnish)
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Other
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East Asian
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Latino
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European (Non-Finnish)
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South Asian
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QD
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ReadPosRankSum
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MQRankSum
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VQSLOD
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FS
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InbreedingCoeff
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DP
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ClippingRankSum
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BaseQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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Latino
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South Asian
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European (Finnish)
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East Asian
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Other
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MQ
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MQRankSum
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QD
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InbreedingCoeff
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VQSLOD
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FS
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DP
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ReadPosRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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African
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European (Non-Finnish)
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Latino
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South Asian
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Other
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FS
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MQ
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DP
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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VQSLOD
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QD
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ReadPosRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Other
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South Asian
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European (Finnish)
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Latino
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African
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European (Non-Finnish)
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FS
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MQ
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MQRankSum
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BaseQRankSum
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QD
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ReadPosRankSum
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DP
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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num of homozygotes: 0

European (Finnish)
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Other
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East Asian
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South Asian
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Latino
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African
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ReadPosRankSum
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VQSLOD
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FS
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InbreedingCoeff
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MQRankSum
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DP
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BaseQRankSum
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MQ
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QD
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ClippingRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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South Asian
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European (Finnish)
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Other
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African
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Latino
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East Asian
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FS
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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MQ
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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African
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South Asian
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European (Non-Finnish)
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Other
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East Asian
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European (Finnish)
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QD
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MQ
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VQSLOD
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DP
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ReadPosRankSum
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MQRankSum
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FS
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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East Asian
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Latino
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European (Non-Finnish)
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South Asian
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VQSLOD
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BaseQRankSum
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ReadPosRankSum
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MQ
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SIO_000300: 5.629e1

FS
type: SiteQuality
SIO_000300: 3.732e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.644e0

MQRankSum
type: SiteQuality
SIO_000300: -2.004e0

DP
type: SiteQuality
SIO_000300: 2.465932e6

QD
type: SiteQuality
SIO_000300: 1.524e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

GenotypeDepth
all individuals: 400
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21465
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2451
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17130
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4013
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2042
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5662
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3583
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4089
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10354
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.64902266043937e-5
allele num: 11562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502358703163967e-5
allele num: 66562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.465064e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.14e0

FS
type: SiteQuality
SIO_000300: 1.689e0

MQ
type: SiteQuality
SIO_000300: 5.969e1

VQSLOD
type: SiteQuality
SIO_000300: -3.165e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.46e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.66e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.74e-1

QD
type: SiteQuality
SIO_000300: 1.286e1

GenotypeQuality
all individuals: 14
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2039
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16362
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 52
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variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 883
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4067
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5535
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21462
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10132
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514187941007238e-5
allele num: 66042
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16444
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.342e0

VQSLOD
type: SiteQuality
SIO_000300: -4.477e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.51e0

DP
type: SiteQuality
SIO_000300: 2.449667e6

QD
type: SiteQuality
SIO_000300: 1.08e1

FS
type: SiteQuality
SIO_000300: 8.353999999999999e0

MQRankSum
type: SiteQuality
SIO_000300: -4.63e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.03e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.3e-3

GenotypeQuality
all individuals: 1204
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3581
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2410
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5485
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2040
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3997
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21461
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 15920
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4061
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11472
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8468
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 5.983246908655763e-4
allele num: 10028
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.038313128551029e-5
allele num: 65826
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16420
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.64e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.0e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.13e0

FS
type: SiteQuality
SIO_000300: 2.811e0

QD
type: SiteQuality
SIO_000300: 1.386e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.0e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -5.329e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.2e-2

MQ
type: SiteQuality
SIO_000300: 5.977e1

DP
type: SiteQuality
SIO_000300: 2.442022e6

GenotypeQuality
all individuals: 204
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2401
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2038
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5396
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1555
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4051
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21457
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 163
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3580
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3996
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15311
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9940
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11456
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8396
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.524436720631727e-5
allele num: 65598
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.080000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.97e1

DP
type: SiteQuality
SIO_000300: 2.430986e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e0

VQSLOD
type: SiteQuality
SIO_000300: 1.09e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.117e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.2e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.347e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.9e-3

GenotypeQuality
all individuals: 117
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13130
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3578
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4015
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variant carriers: 0

GenotypeQuality
all individuals: 444
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variant carriers: 0

GenotypeQuality
all individuals: 3984
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 97
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variant carriers: 0

GenotypeQuality
all individuals: 2175
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variant carriers: 0

GenotypeQuality
all individuals: 102
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variant carriers: 0

GenotypeQuality
all individuals: 464
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variant carriers: 0

GenotypeQuality
all individuals: 516
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21455
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 5141
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8280
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11396
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16364
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9764
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.068708380642588e-5
allele num: 65174
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.05e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.47e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.395326e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.73e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.608e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

QD
type: SiteQuality
SIO_000300: 1.471e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.129e0

GenotypeQuality
all individuals: 136
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3981
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 550
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variant carriers: 0

GenotypeQuality
all individuals: 32
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variant carriers: 0

GenotypeQuality
all individuals: 749
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3578
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12844
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21452
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2358
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5108
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
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variant carriers: 0

GenotypeQuality
all individuals: 4012
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 1.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11390
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65130
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9750
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.209774981853375e-4
allele num: 8266
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16350
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

FS
type: SiteQuality
SIO_000300: 5.633e0

QD
type: SiteQuality
SIO_000300: 1.004e1

VQSLOD
type: SiteQuality
SIO_000300: 3.33e-1

DP
type: SiteQuality
SIO_000300: 2.391523e6

MQRankSum
type: SiteQuality
SIO_000300: 5.97e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.29e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.583e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.195e0

GenotypeQuality
all individuals: 527
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 38
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variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2338
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variant carriers: 0

GenotypeQuality
all individuals: 168
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variant carriers: 0

GenotypeQuality
all individuals: 652
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 315
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variant carriers: 0

GenotypeQuality
all individuals: 3976
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variant carriers: 0

GenotypeQuality
all individuals: 248
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GenotypeQuality
all individuals: 2032
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 790
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variant carriers: 0

GenotypeQuality
all individuals: 982
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4005
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3577
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8224
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65030
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9682
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11378
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.114711997064938e-5
allele num: 16354
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.900000000000001e-2

QD
type: SiteQuality
SIO_000300: 1.231e1

MQ
type: SiteQuality
SIO_000300: 5.932e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.82e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

MQRankSum
type: SiteQuality
SIO_000300: -9.3e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.99e-1

DP
type: SiteQuality
SIO_000300: 2.378435e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.271e0

GenotypeQuality
all individuals: 693
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21607
bin: 9.75e1
variant carriers: 320

GenotypeQuality
all individuals: 3958
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 939
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3558
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 326
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2319
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 51
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11259
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1087
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2028
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3993
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2110
bin: 2.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8204
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11370
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.618795418154945e-5
allele num: 64952
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.138952164009112e-3
allele num: 878
num of homozygotes: 0

South Asian
type: Population
allele count: 324
allele frequency: 1.982378854625551e-2
allele num: 16344
num of homozygotes: 6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.95e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.11e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.92e-2

QD
type: SiteQuality
SIO_000300: 1.506e1

MQRankSum
type: SiteQuality
SIO_000300: 2.16e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.26e0

DP
type: SiteQuality
SIO_000300: 2.37351e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.15e-1

GenotypeQuality
all individuals: 3993
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3546
bin: 9.25e1
variant carriers: 3

GenotypeQuality
all individuals: 194
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2310
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11399
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 67
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 938
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 193
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4866
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 559
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 697
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2129
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2018
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 408
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21613
bin: 9.75e1
variant carriers: 531

GenotypeQuality
all individuals: 324
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 8
allele frequency: 9.09090909090909e-3
allele num: 880
num of homozygotes: 0

Latino
type: Population
allele count: 89
allele frequency: 7.833127970427742e-3
allele num: 11362
num of homozygotes: 0

South Asian
type: Population
allele count: 47
allele frequency: 2.875321179493454e-3
allele num: 16346
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 3
allele frequency: 4.564820450395618e-4
allele num: 6572
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.220107369448512e-4
allele num: 8196
num of homozygotes: 0

African
type: Population
allele count: 115
allele frequency: 1.192451265035255e-2
allele num: 9644
num of homozygotes: 2

European (Non-Finnish)
type: Population
allele count: 276
allele frequency: 4.251779277197523e-3
allele num: 64914
num of homozygotes: 2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.14e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.5e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.01e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.24e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.06e-2

QD
type: SiteQuality
SIO_000300: 1.622e1

DP
type: SiteQuality
SIO_000300: 2.370044e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.5e-2

GenotypeQuality
all individuals: 218
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 568
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2021
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2326
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3573
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21277
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 517
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 429
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2131
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1174
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11160
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4012
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9632
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11360
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64870
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8186
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.223990208078335e-4
allele num: 16340
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

MQRankSum
type: SiteQuality
SIO_000300: -3.843e0

VQSLOD
type: SiteQuality
SIO_000300: 1.6e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.01e-1

DP
type: SiteQuality
SIO_000300: 2.357043e6

BaseQRankSum
type: SiteQuality
SIO_000300: 7.47e-1

QD
type: SiteQuality
SIO_000300: 9.220000000000001e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.45e-1

MQ
type: SiteQuality
SIO_000300: 4.897e1

GenotypeQuality
all individuals: 3566
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2129
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6270
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 528
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1399
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 398
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3956
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1011
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1689
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3948
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 585
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2247
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2282
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2016
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21266
bin: 9.75e1
variant carriers: 2

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9488
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64270
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16272
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.476473501733531e-4
allele num: 8076
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11290
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

QD
type: SiteQuality
SIO_000300: 1.486e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.775e0

DP
type: SiteQuality
SIO_000300: 2.326759e6

ClippingRankSum
type: SiteQuality
SIO_000300: 6.69e-1

MQ
type: SiteQuality
SIO_000300: 5.953e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.78e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.536e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.23e0

GenotypeQuality
all individuals: 2186
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4964
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 535
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 622
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4427
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 8798
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1144
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3118
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3159
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1026
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1618
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3348
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6159
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.035731530661516e-5
allele num: 66272
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Latino
type: Population
allele count: 7
allele frequency: 6.111402130260171e-4
allele num: 11454
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16260
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.103752759381898e-3
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 186
allele frequency: 1.79156231939896e-2
allele num: 10382
num of homozygotes: 2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.942708e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.37e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.58e-1

QD
type: SiteQuality
SIO_000300: 1.591e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.56e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.99e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.0e-2

VQSLOD
type: SiteQuality
SIO_000300: 6.16e0

GenotypeQuality
all individuals: 1316
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2259
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 660
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6440
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3425
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 860
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4586
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3263
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13390
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 610
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 851
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 460
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5160
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15697
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16282
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11488
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.103752759381898e-3
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66360
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.08e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.25e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.49e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.66e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.85e-1

QD
type: SiteQuality
SIO_000300: 1.517e1

DP
type: SiteQuality
SIO_000300: 1.966396e6

FS
type: SiteQuality
SIO_000300: 5.342e0

GenotypeQuality
all individuals: 17
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 329
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 610
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 340
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5299
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2304
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15733
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3502
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4733
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6666
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 478
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3361
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15497
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.626492106276473e-5
allele num: 10388
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66416
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16342
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.26e-1

DP
type: SiteQuality
SIO_000300: 1.993415e6

ClippingRankSum
type: SiteQuality
SIO_000300: 8.68e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.54e0

FS
type: SiteQuality
SIO_000300: 2.062e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.95e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.073e0

MQ
type: SiteQuality
SIO_000300: 5.875e1

QD
type: SiteQuality
SIO_000300: 1.362e1

GenotypeQuality
all individuals: 394
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 679
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 300
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5177
bin: 7.75e1
variant carriers: 4

GenotypeQuality
all individuals: 4632
bin: 8.25e1
variant carriers: 3

GenotypeQuality
all individuals: 16702
bin: 9.75e1
variant carriers: 1641

GenotypeQuality
all individuals: 401
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 326
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2254
bin: 8.75e1
variant carriers: 3

GenotypeQuality
all individuals: 425
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 11
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15185
bin: 6.25e1
variant carriers: 5

GenotypeQuality
all individuals: 19
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3288
bin: 7.25e1
variant carriers: 4

GenotypeQuality
all individuals: 3408
bin: 9.25e1
variant carriers: 6

GenotypeQuality
all individuals: 6512
bin: 6.75e1
variant carriers: 3

Latino
type: Population
allele count: 133
allele frequency: 1.155516941789748e-2
allele num: 11510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 65
allele frequency: 9.785619655546189e-4
allele num: 66424
num of homozygotes: 0

South Asian
type: Population
allele count: 8
allele frequency: 4.901360127435363e-4
allele num: 16322
num of homozygotes: 0

Other
type: Population
allele count: 8
allele frequency: 8.830022075055188e-3
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 1579
allele frequency: 1.520315809743886e-1
allele num: 10386
num of homozygotes: 119

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.445e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.86e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.41e-1

MQ
type: SiteQuality
SIO_000300: 5.974e1

FS
type: SiteQuality
SIO_000300: 7.93e-1

QD
type: SiteQuality
SIO_000300: 1.396e1

MQRankSum
type: SiteQuality
SIO_000300: 1.44e-1

DP
type: SiteQuality
SIO_000300: 2.020745e6

VQSLOD
type: SiteQuality
SIO_000300: 5.99e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.179e-1

GenotypeQuality
all individuals: 4804
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3536
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3384
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 394
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6726
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2313
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 448
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 358
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16347
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5347
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66468
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.110975311659741e-5
allele num: 16364
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.091e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.6e-1

QD
type: SiteQuality
SIO_000300: 1.69e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.17e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.93e-1

MQ
type: SiteQuality
SIO_000300: 6.149e1

DP
type: SiteQuality
SIO_000300: 2.013801e6

VQSLOD
type: SiteQuality
SIO_000300: 3.37e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66480
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.110975311659741e-5
allele num: 16364
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.011e0

BaseQRankSum
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SIO_000300: -2.282e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.352e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -4.56e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.57e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.48e0

DP
type: SiteQuality
SIO_000300: 2.016934e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16378
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66504
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.679048776254123e-5
allele num: 11522
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.17e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.72e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
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SIO_000300: -1.831e0

FS
type: SiteQuality
SIO_000300: 4.028e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.61e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.91e-1

QD
type: SiteQuality
SIO_000300: 2.155e1

DP
type: SiteQuality
SIO_000300: 2.021211e6

MQRankSum
type: SiteQuality
SIO_000300: 1.4e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502765087761481e-5
allele num: 66544
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16390
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.524e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.27e-1

MQ
type: SiteQuality
SIO_000300: 5.907e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.8e-3

DP
type: SiteQuality
SIO_000300: 2.026865e6

QD
type: SiteQuality
SIO_000300: 1.076e1

VQSLOD
type: SiteQuality
SIO_000300: 9.73e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.93e-1

FS
type: SiteQuality
SIO_000300: 3.963e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.31e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 27

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66618
num of homozygotes: 0

East Asian
type: Population
allele count: 27
allele frequency: 3.122831367106176e-3
allele num: 8646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16452
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.59e0

MQRankSum
type: SiteQuality
SIO_000300: 1.72e-1

MQ
type: SiteQuality
SIO_000300: 5.95e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.6e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.9e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

FS
type: SiteQuality
SIO_000300: 1.47e0

DP
type: SiteQuality
SIO_000300: 2.03508e6

ClippingRankSum
type: SiteQuality
SIO_000300: 8.799999999999999e-2

QD
type: SiteQuality
SIO_000300: 1.445e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66652
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.821051353648173e-4
allele num: 16474
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 1.11e0

BaseQRankSum
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SIO_000300: -1.516e0

MQ
type: SiteQuality
SIO_000300: 5.913e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.5e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.98e-1

DP
type: SiteQuality
SIO_000300: 2.038174e6

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.063545961678389e-5
allele num: 16492
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.499520153550864e-5
allele num: 66688
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
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SIO_000300: -3.11e-1

VQSLOD
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BaseQRankSum
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MQRankSum
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SIO_000300: 7.000000000000001e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
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QD
type: SiteQuality
SIO_000300: 1.46e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

DP
type: SiteQuality
SIO_000300: 2.041053e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 8.994962820820341e-5
allele num: 66704
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.653513326410523e-5
allele num: 11556
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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African
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BaseQRankSum
type: SiteQuality
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QD
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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VQSLOD
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MQ
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SIO_000300: 5.935e1

InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.042634e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.199328376109379e-4
allele num: 66704
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 5.192107995846313e-4
allele num: 11556
num of homozygotes: 0

African
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allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
allele num: 908
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
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South Asian
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allele count: 3
allele frequency: 1.817520901490367e-4
allele num: 16506
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
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SIO_000300: 2.21e0

DP
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ClippingRankSum
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ReadPosRankSum
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FS
type: SiteQuality
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MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
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SIO_000300: 2.96e0

QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele frequency: 1.155535012710885e-4
allele num: 8654
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European (Non-Finnish)
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allele frequency: 1.498576352465158e-5
allele num: 66730
num of homozygotes: 0

FS
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QD
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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MQRankSum
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MQ
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ClippingRankSum
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SIO_000300: 1.34e-1

BaseQRankSum
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SIO_000300: 1.61e0

DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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InbreedingCoeff
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SIO_000300: -1.0e-4

MQRankSum
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QD
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VQSLOD
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DP
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FS
type: SiteQuality
SIO_000300: 5.99e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.84e-1

BaseQRankSum
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SIO_000300: 3.34e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.91e0

MQ
type: SiteQuality
SIO_000300: 5.973e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele frequency: 1.727712508638562e-4
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.498486528606108e-5
allele num: 66734
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African
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allele count: 0
allele frequency: 0.0e0
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South Asian
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BaseQRankSum
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SIO_000300: 5.07e0

QD
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ClippingRankSum
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SIO_000300: -6.4e-2

ReadPosRankSum
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DP
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MQRankSum
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VQSLOD
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InbreedingCoeff
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FS
type: SiteQuality
SIO_000300: 5.98e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
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FS
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
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QD
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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DP
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VQSLOD
type: SiteQuality
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 39
allele frequency: 5.843922320786382e-4
allele num: 66736
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele num: 6614
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African
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allele frequency: 9.609840476648087e-5
allele num: 10406
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Latino
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Other
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South Asian
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MQRankSum
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SIO_000300: 4.4e-2

ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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MQ
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QD
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FS
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DP
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ClippingRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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East Asian
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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Latino
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Other
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ClippingRankSum
type: SiteQuality
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FS
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InbreedingCoeff
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MQRankSum
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MQ
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VQSLOD
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BaseQRankSum
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DP
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QD
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ReadPosRankSum
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