18-44036615-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44036615
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 44036615
    reference: chr 18
allele count: 3
allele frequency: 2.473818751546137e-5
allele num: 121270
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000141622
  ensembl protein: ENSP00000444285
  ensembl transcript: ENST00000543885
  gene symbol: RNF165
  hgvsc: ENST00000543885.1:c.*16G>A
  variant of: http://identifiers.org/hgnc/31696
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141622
  ensembl protein: ENSP00000468365
  ensembl transcript: ENST00000586604
  gene symbol: RNF165
  hgvsc: ENST00000586604.1:c.*546G>A
  variant of: http://identifiers.org/hgnc/31696
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000141622
  ensembl protein: ENSP00000269439
  ensembl transcript: ENST00000269439
  gene symbol: RNF165
  hgvsc: ENST00000269439.7:c.*16G>A
  variant of: http://identifiers.org/hgnc/31696
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3975
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2459
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2139
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4793
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3223
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1817
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5462
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3091
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2776
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5510
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4779
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2442
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4781
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3657
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5252
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3950
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 970
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48561
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 720
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1474
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 706
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1198
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 991
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5359
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum

18-44036616-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44036616
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 44036616
    reference: chr 18
allele count: 1
allele frequency: 8.247014580721778e-6
allele num: 121256
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000141622
  ensembl protein: ENSP00000269439
  ensembl transcript: ENST00000269439
  gene symbol: RNF165
  hgvsc: ENST00000269439.7:c.*17T>C
  variant of: http://identifiers.org/hgnc/31696
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000141622
  ensembl protein: ENSP00000444285
  ensembl transcript: ENST00000543885
  gene symbol: RNF165
  hgvsc: ENST00000543885.1:c.*17T>C
  variant of: http://identifiers.org/hgnc/31696
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141622
  ensembl protein: ENSP00000468365
  ensembl transcript: ENST00000586604
  gene symbol: RNF165
  hgvsc: ENST00000586604.1:c.*547T>C
  variant of: http://identifiers.org/hgnc/31696
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3092
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3949
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2141
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4779
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1817
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5462
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3221
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4781
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3975
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3625
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5252
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2459
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2445
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4793
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1473
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1198
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48559
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 991
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 968
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 720
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5312
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 706
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD

18-44036624-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44036624
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 44036624
    reference: chr 18
allele count: 1
allele frequency: 8.250280509537325e-6
allele num: 121208
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141622
  ensembl protein: ENSP00000468365
  ensembl transcript: ENST00000586604
  gene symbol: RNF165
  hgvsc: ENST00000586604.1:c.*555C>T
  variant of: http://identifiers.org/hgnc/31696
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000141622
  ensembl protein: ENSP00000444285
  ensembl transcript: ENST00000543885
  gene symbol: RNF165
  hgvsc: ENST00000543885.1:c.*25C>T
  variant of: http://identifiers.org/hgnc/31696
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000141622
  ensembl protein: ENSP00000269439
  ensembl transcript: ENST00000269439
  gene symbol: RNF165
  hgvsc: ENST00000269439.7:c.*25C>T
  variant of: http://identifiers.org/hgnc/31696
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3974
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5508
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5252
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3230
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2444
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2676
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4781
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1817
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3091
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3949
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4793
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4780
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5462
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3221
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2459
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 207
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 692
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

18-44036642-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44036642
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 44036642
    reference: chr 18
allele count: 2
allele frequency: 1.652947204866277e-5
allele num: 120996
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141622
  ensembl protein: ENSP00000468365
  ensembl transcript: ENST00000586604
  gene symbol: RNF165
  hgvsc: ENST00000586604.1:c.*573C>G
  variant of: http://identifiers.org/hgnc/31696
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000141622
  ensembl protein: ENSP00000444285
  ensembl transcript: ENST00000543885
  gene symbol: RNF165
  hgvsc: ENST00000543885.1:c.*43C>G
  variant of: http://identifiers.org/hgnc/31696
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000141622
  ensembl protein: ENSP00000269439
  ensembl transcript: ENST00000269439
  gene symbol: RNF165
  hgvsc: ENST00000269439.7:c.*43C>G
  variant of: http://identifiers.org/hgnc/31696
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2741
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3965
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5253
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3092
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5463
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
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genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 625
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2839
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genotype quality: GenotypeQuality
  all individuals: 906
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1091
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum

18-44036645-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44036645
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 44036645
    reference: chr 18
allele count: 1
allele frequency: 8.261049153242462e-6
allele num: 121050
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000141622
  ensembl protein: ENSP00000444285
  ensembl transcript: ENST00000543885
  gene symbol: RNF165
  hgvsc: ENST00000543885.1:c.*46C>T
  variant of: http://identifiers.org/hgnc/31696
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000141622
  ensembl protein: ENSP00000269439
  ensembl transcript: ENST00000269439
  gene symbol: RNF165
  hgvsc: ENST00000269439.7:c.*46C>T
  variant of: http://identifiers.org/hgnc/31696
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141622
  ensembl protein: ENSP00000468365
  ensembl transcript: ENST00000586604
  gene symbol: RNF165
  hgvsc: ENST00000586604.1:c.*576C>T
  variant of: http://identifiers.org/hgnc/31696
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2459
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3949
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3191
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2089
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3963
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3091
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2363
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1657
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2771
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4779
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4786
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4779
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5507
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5462
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5254
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1817
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 699
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 718
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1194
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 966
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48551
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3038
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 906
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 637
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
population: African
reference allele: C
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP

18-44036649-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44036649
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 44036649
    reference: chr 18
allele count: 1
allele frequency: 8.271161767381846e-6
allele num: 120902
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000141622
  ensembl protein: ENSP00000269439
  ensembl transcript: ENST00000269439
  gene symbol: RNF165
  hgvsc: ENST00000269439.7:c.*50C>T
  variant of: http://identifiers.org/hgnc/31696
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000141622
  ensembl protein: ENSP00000444285
  ensembl transcript: ENST00000543885
  gene symbol: RNF165
  hgvsc: ENST00000543885.1:c.*50C>T
  variant of: http://identifiers.org/hgnc/31696
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000141622
  ensembl protein: ENSP00000468365
  ensembl transcript: ENST00000586604
  gene symbol: RNF165
  hgvsc: ENST00000586604.1:c.*580C>T
  variant of: http://identifiers.org/hgnc/31696
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5507
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1817
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3091
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2933
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1874
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4779
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5252
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3183
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2337
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5464
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2009
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2459
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4780
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3949
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3966
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 728
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 719
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 432
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 631
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 640
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2248
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 913
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48552
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 968
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 715
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1195
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1069
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 668
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
population: African
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD

18-44057108-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44057108
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 44057108
    reference: chr 18
allele count: 7
allele frequency: 3.22432058959005e-4
allele num: 21710
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381707
  ensembl transcript: ENST00000398722
  gene symbol: LOXHD1
  hgvsc: ENST00000398722.4:c.*38G>A
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000463285
  ensembl transcript: ENST00000579038
  gene symbol: LOXHD1
  hgvsc: ENST00000579038.1:c.*73G>A
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381692
  ensembl transcript: ENST00000398705
  gene symbol: LOXHD1
  hgvsc: ENST00000398705.2:c.*73G>A
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000300591
  ensembl transcript: ENST00000300591
  gene symbol: LOXHD1
  hgvsc: ENST00000300591.6:c.*38G>A
  variant of: http://identifiers.org/hgnc/26521
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1564
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1576
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 587
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1105
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5676
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 587
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum

18-44057121-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44057121
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 44057121
    reference: chr 18
allele count: 1
allele frequency: 4.605323754259925e-5
allele num: 21714
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000300591
  ensembl transcript: ENST00000300591
  gene symbol: LOXHD1
  hgvsc: ENST00000300591.6:c.*25T>C
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381707
  ensembl transcript: ENST00000398722
  gene symbol: LOXHD1
  hgvsc: ENST00000398722.4:c.*25T>C
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381692
  ensembl transcript: ENST00000398705
  gene symbol: LOXHD1
  hgvsc: ENST00000398705.2:c.*60T>C
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000463285
  ensembl transcript: ENST00000579038
  gene symbol: LOXHD1
  hgvsc: ENST00000579038.1:c.*60T>C
  variant of: http://identifiers.org/hgnc/26521
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1038
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1302
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1190
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1206
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 588
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 585
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5677
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD

18-44057123-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44057123
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 44057123
    reference: chr 18
allele count: 50
allele frequency: 2.302661877129962e-3
allele num: 21714
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000463285
  ensembl transcript: ENST00000579038
  gene symbol: LOXHD1
  hgvsc: ENST00000579038.1:c.*58G>C
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381707
  ensembl transcript: ENST00000398722
  gene symbol: LOXHD1
  hgvsc: ENST00000398722.4:c.*23G>C
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381692
  ensembl transcript: ENST00000398705
  gene symbol: LOXHD1
  hgvsc: ENST00000398705.2:c.*58G>C
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000300591
  ensembl transcript: ENST00000300591
  gene symbol: LOXHD1
  hgvsc: ENST00000300591.6:c.*23G>C
  variant of: http://identifiers.org/hgnc/26521
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1575
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1520
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1186
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 6.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 5.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1916
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 584
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1240
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 593
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 753
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5690
  bin: 9.75e1
  variant carriers: 50
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: QD

18-44057151-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44057151
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 44057151
    reference: chr 18
allele count: 40
allele frequency: 1.84331797235023e-3
allele num: 21700
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000300591
  ensembl transcript: ENST00000300591
  gene symbol: LOXHD1
  hgvsc: ENST00000300591.6:c.3340G>A
  hgvsp: ENSP00000300591.6:p.Gly1114Arg
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381692
  ensembl transcript: ENST00000398705
  gene symbol: LOXHD1
  hgvsc: ENST00000398705.2:c.*30G>A
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381707
  ensembl transcript: ENST00000398722
  gene symbol: LOXHD1
  hgvsc: ENST00000398722.4:c.5839G>A
  hgvsp: ENSP00000381707.4:p.Gly1947Arg
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000463285
  ensembl transcript: ENST00000579038
  gene symbol: LOXHD1
  hgvsc: ENST00000579038.1:c.*30G>A
  variant of: http://identifiers.org/hgnc/26521
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1571
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1159
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1181
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1255
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1910
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5682
  bin: 9.75e1
  variant carriers: 40
genotype quality: GenotypeQuality
  all individuals: 585
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Gly1114Arg
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/18-44057163-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44057163
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 44057163
    reference: chr 18
allele count: 1
allele frequency: 4.611695259177273e-5
allele num: 21684
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381692
  ensembl transcript: ENST00000398705
  gene symbol: LOXHD1
  hgvsc: ENST00000398705.2:c.*18G>T
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381707
  ensembl transcript: ENST00000398722
  gene symbol: LOXHD1
  hgvsc: ENST00000398722.4:c.5827G>T
  hgvsp: ENSP00000381707.4:p.Ala1943Ser
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000300591
  ensembl transcript: ENST00000300591
  gene symbol: LOXHD1
  hgvsc: ENST00000300591.6:c.3328G>T
  hgvsp: ENSP00000300591.6:p.Ala1110Ser
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000463285
  ensembl transcript: ENST00000579038
  gene symbol: LOXHD1
  hgvsc: ENST00000579038.1:c.*18G>T
  variant of: http://identifiers.org/hgnc/26521
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1180
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1290
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1293
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5660
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1923
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 744
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 584
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1191
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 597
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ala1110Ser
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD

18-44057174-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44057174
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 44057174
    reference: chr 18
allele count: 1
allele frequency: 4.625346901017576e-5
allele num: 21620
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000463285
  ensembl transcript: ENST00000579038
  gene symbol: LOXHD1
  hgvsc: ENST00000579038.1:c.*7G>A
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381707
  ensembl transcript: ENST00000398722
  gene symbol: LOXHD1
  hgvsc: ENST00000398722.4:c.5816G>A
  hgvsp: ENSP00000381707.4:p.Arg1939Lys
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000300591
  ensembl transcript: ENST00000300591
  gene symbol: LOXHD1
  hgvsc: ENST00000300591.6:c.3317G>A
  hgvsp: ENSP00000300591.6:p.Arg1106Lys
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381692
  ensembl transcript: ENST00000398705
  gene symbol: LOXHD1
  hgvsc: ENST00000398705.2:c.*7G>A
  variant of: http://identifiers.org/hgnc/26521
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1287
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1553
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1876
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 730
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 588
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 596
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1107
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 571
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg1106Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

http://identifiers.org/exac.variant/18-44057181-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44057181
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 44057181
    reference: chr 18
allele count: 1
allele frequency: 4.631344942571323e-5
allele num: 21592
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_lost
  consequence: splice_region_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000463285
  ensembl transcript: ENST00000579038
  gene symbol: LOXHD1
  hgvsc: ENST00000579038.1:c.3036G>T
  hgvsp: ENSP00000463285.1:p.Ter1012TyrextTer1
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381707
  ensembl transcript: ENST00000398722
  gene symbol: LOXHD1
  hgvsc: ENST00000398722.4:c.5809G>T
  hgvsp: ENSP00000381707.4:p.Val1937Leu
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000300591
  ensembl transcript: ENST00000300591
  gene symbol: LOXHD1
  hgvsc: ENST00000300591.6:c.3310G>T
  hgvsp: ENSP00000300591.6:p.Val1104Leu
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: stop_lost
  consequence: splice_region_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381692
  ensembl transcript: ENST00000398705
  gene symbol: LOXHD1
  hgvsc: ENST00000398705.2:c.1374G>T
  hgvsp: ENSP00000381692.2:p.Ter458TyrextTer1
  variant of: http://identifiers.org/hgnc/26521
canonical: false
consequence: stop lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1269
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1521
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5660
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1117
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 567
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ter458TyrextTer1
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

18-44057184-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44057184
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 44057184
    reference: chr 18
allele count: 1
allele frequency: 4.636928498562552e-5
allele num: 21566
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381692
  ensembl transcript: ENST00000398705
  gene symbol: LOXHD1
  hgvsc: ENST00000398705.2:c.1372-1G>A
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381707
  ensembl transcript: ENST00000398722
  gene symbol: LOXHD1
  hgvsc: ENST00000398722.4:c.5807-1G>A
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000300591
  ensembl transcript: ENST00000300591
  gene symbol: LOXHD1
  hgvsc: ENST00000300591.6:c.3308-1G>A
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000463285
  ensembl transcript: ENST00000579038
  gene symbol: LOXHD1
  hgvsc: ENST00000579038.1:c.3034-1G>A
  variant of: http://identifiers.org/hgnc/26521
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1224
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1500
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1098
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 712
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 565
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 584
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1803
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
hgvs: c.3308-1G>A
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

18-44057190-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44057190
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 44057190
    reference: chr 18
allele count: 1
allele frequency: 4.646408326363721e-5
allele num: 21522
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381692
  ensembl transcript: ENST00000398705
  gene symbol: LOXHD1
  hgvsc: ENST00000398705.2:c.1372-7A>G
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000300591
  ensembl transcript: ENST00000300591
  gene symbol: LOXHD1
  hgvsc: ENST00000300591.6:c.3308-7A>G
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381707
  ensembl transcript: ENST00000398722
  gene symbol: LOXHD1
  hgvsc: ENST00000398722.4:c.5807-7A>G
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000463285
  ensembl transcript: ENST00000579038
  gene symbol: LOXHD1
  hgvsc: ENST00000579038.1:c.3034-7A>G
  variant of: http://identifiers.org/hgnc/26521
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1158
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1443
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 701
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 593
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5658
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1054
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 583
  bin: 8.25e1
  variant carriers: 0
hgvs: c.3308-7A>G
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: South Asian
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: QD

http://identifiers.org/exac.variant/18-44057208-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44057208
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 44057208
    reference: chr 18
allele count: 1
allele frequency: 4.667662434652726e-5
allele num: 21424
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000300591
  ensembl transcript: ENST00000300591
  gene symbol: LOXHD1
  hgvsc: ENST00000300591.6:c.3308-25G>T
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381692
  ensembl transcript: ENST00000398705
  gene symbol: LOXHD1
  hgvsc: ENST00000398705.2:c.1372-25G>T
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000463285
  ensembl transcript: ENST00000579038
  gene symbol: LOXHD1
  hgvsc: ENST00000579038.1:c.3034-25G>T
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381707
  ensembl transcript: ENST00000398722
  gene symbol: LOXHD1
  hgvsc: ENST00000398722.4:c.5807-25G>T
  variant of: http://identifiers.org/hgnc/26521
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1256
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1131
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1278
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1034
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5655
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 578
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1394
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 591
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

18-44057215-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44057215
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 44057215
    reference: chr 18
allele count: 1
allele frequency: 4.675081813931744e-5
allele num: 21390
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381707
  ensembl transcript: ENST00000398722
  gene symbol: LOXHD1
  hgvsc: ENST00000398722.4:c.5807-32A>G
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000463285
  ensembl transcript: ENST00000579038
  gene symbol: LOXHD1
  hgvsc: ENST00000579038.1:c.3034-32A>G
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000300591
  ensembl transcript: ENST00000300591
  gene symbol: LOXHD1
  hgvsc: ENST00000300591.6:c.3308-32A>G
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381692
  ensembl transcript: ENST00000398705
  gene symbol: LOXHD1
  hgvsc: ENST00000398705.2:c.1372-32A>G
  variant of: http://identifiers.org/hgnc/26521
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1121
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1022
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 590
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 577
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 590
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ

18-44057225-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44057225
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 44057225
    reference: chr 18
allele count: 1
allele frequency: 4.706768332862657e-5
allele num: 21246
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000300591
  ensembl transcript: ENST00000300591
  gene symbol: LOXHD1
  hgvsc: ENST00000300591.6:c.3308-42C>G
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381692
  ensembl transcript: ENST00000398705
  gene symbol: LOXHD1
  hgvsc: ENST00000398705.2:c.1372-42C>G
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000463285
  ensembl transcript: ENST00000579038
  gene symbol: LOXHD1
  hgvsc: ENST00000579038.1:c.3034-42C>G
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000444586
  ensembl transcript: ENST00000536736
  gene symbol: LOXHD1
  hgvsc: ENST00000536736.1:c.*210C>G
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000409062
  ensembl transcript: ENST00000441893
  gene symbol: LOXHD1
  hgvsc: ENST00000441893.2:c.*210C>G
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000461964
  ensembl transcript: ENST00000582408
  gene symbol: LOXHD1
  hgvsc: ENST00000582408.1:c.*210C>G
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381707
  ensembl transcript: ENST00000398722
  gene symbol: LOXHD1
  hgvsc: ENST00000398722.4:c.5807-42C>G
  variant of: http://identifiers.org/hgnc/26521
canonical: false
consequence: 3' UTR
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1273
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1408
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 845
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5636
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 546
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 529
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1065
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP

18-44057397-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44057397
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 44057397
    reference: chr 18
allele count: 1
allele frequency: 7.552870090634441e-5
allele num: 13240
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381676
  ensembl transcript: ENST00000398686
  gene symbol: LOXHD1
  hgvsc: ENST00000398686.4:c.*38A>G
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000409062
  ensembl transcript: ENST00000441893
  gene symbol: LOXHD1
  hgvsc: ENST00000441893.2:c.*38A>G
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000444586
  ensembl transcript: ENST00000536736
  gene symbol: LOXHD1
  hgvsc: ENST00000536736.1:c.*38A>G
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000461964
  ensembl transcript: ENST00000582408
  gene symbol: LOXHD1
  hgvsc: ENST00000582408.1:c.*38A>G
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381707
  ensembl transcript: ENST00000398722
  gene symbol: LOXHD1
  hgvsc: ENST00000398722.4:c.5807-214A>G
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381692
  ensembl transcript: ENST00000398705
  gene symbol: LOXHD1
  hgvsc: ENST00000398705.2:c.1371+206A>G
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000300591
  ensembl transcript: ENST00000300591
  gene symbol: LOXHD1
  hgvsc: ENST00000300591.6:c.3308-214A>G
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000463285
  ensembl transcript: ENST00000579038
  gene symbol: LOXHD1
  hgvsc: ENST00000579038.1:c.3033+206A>G
  variant of: http://identifiers.org/hgnc/26521
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2680
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3039
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2892
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 609
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 832
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

18-44057416-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44057416
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 44057416
    reference: chr 18
allele count: 3
allele frequency: 2.157031924072476e-4
allele num: 13908
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000409062
  ensembl transcript: ENST00000441893
  gene symbol: LOXHD1
  hgvsc: ENST00000441893.2:c.*19C>T
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381707
  ensembl transcript: ENST00000398722
  gene symbol: LOXHD1
  hgvsc: ENST00000398722.4:c.5806+201C>T
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000463285
  ensembl transcript: ENST00000579038
  gene symbol: LOXHD1
  hgvsc: ENST00000579038.1:c.3033+187C>T
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000387621
  ensembl transcript: ENST00000441551
  gene symbol: LOXHD1
  hgvsc: ENST00000441551.2:c.*19C>T
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000444586
  ensembl transcript: ENST00000536736
  gene symbol: LOXHD1
  hgvsc: ENST00000536736.1:c.*19C>T
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381692
  ensembl transcript: ENST00000398705
  gene symbol: LOXHD1
  hgvsc: ENST00000398705.2:c.1371+187C>T
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000300591
  ensembl transcript: ENST00000300591
  gene symbol: LOXHD1
  hgvsc: ENST00000300591.6:c.3307+201C>T
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000461964
  ensembl transcript: ENST00000582408
  gene symbol: LOXHD1
  hgvsc: ENST00000582408.1:c.*19C>T
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381676
  ensembl transcript: ENST00000398686
  gene symbol: LOXHD1
  hgvsc: ENST00000398686.4:c.*19C>T
  variant of: http://identifiers.org/hgnc/26521
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2607
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2616
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2534
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2236
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 865
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD

18-44057459-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44057459
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 44057459
    reference: chr 18
allele count: 1
allele frequency: 5.806526535826269e-5
allele num: 17222
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000463285
  ensembl transcript: ENST00000579038
  gene symbol: LOXHD1
  hgvsc: ENST00000579038.1:c.3033+144G>A
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000409062
  ensembl transcript: ENST00000441893
  gene symbol: LOXHD1
  hgvsc: ENST00000441893.2:c.3411G>A
  hgvsp: ENSP00000409062.2:p.Trp1137Ter
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381676
  ensembl transcript: ENST00000398686
  gene symbol: LOXHD1
  hgvsc: ENST00000398686.4:c.1515G>A
  hgvsp: ENSP00000381676.4:p.Trp505Ter
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000444586
  ensembl transcript: ENST00000536736
  gene symbol: LOXHD1
  hgvsc: ENST00000536736.1:c.6612G>A
  hgvsp: ENSP00000444586.1:p.Trp2204Ter
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381707
  ensembl transcript: ENST00000398722
  gene symbol: LOXHD1
  hgvsc: ENST00000398722.4:c.5806+158G>A
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000387621
  ensembl transcript: ENST00000441551
  gene symbol: LOXHD1
  hgvsc: ENST00000441551.2:c.6180G>A
  hgvsp: ENSP00000387621.2:p.Trp2060Ter
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381692
  ensembl transcript: ENST00000398705
  gene symbol: LOXHD1
  hgvsc: ENST00000398705.2:c.1371+144G>A
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000300591
  ensembl transcript: ENST00000300591
  gene symbol: LOXHD1
  hgvsc: ENST00000300591.6:c.3307+158G>A
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000461964
  ensembl transcript: ENST00000582408
  gene symbol: LOXHD1
  hgvsc: ENST00000582408.1:c.3279G>A
  hgvsp: ENSP00000461964.1:p.Trp1093Ter
  variant of: http://identifiers.org/hgnc/26521
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2081
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4841
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2126
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Trp2204Ter
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: Latino
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

18-44057474-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44057474
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 44057474
    reference: chr 18
allele count: 28
allele frequency: 1.591632560254661e-3
allele num: 17592
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000387621
  ensembl transcript: ENST00000441551
  gene symbol: LOXHD1
  hgvsc: ENST00000441551.2:c.6165G>A
  hgvsp: ENST00000441551.2:c.6165G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381692
  ensembl transcript: ENST00000398705
  gene symbol: LOXHD1
  hgvsc: ENST00000398705.2:c.1371+129G>A
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000409062
  ensembl transcript: ENST00000441893
  gene symbol: LOXHD1
  hgvsc: ENST00000441893.2:c.3396G>A
  hgvsp: ENST00000441893.2:c.3396G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000300591
  ensembl transcript: ENST00000300591
  gene symbol: LOXHD1
  hgvsc: ENST00000300591.6:c.3307+143G>A
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000461964
  ensembl transcript: ENST00000582408
  gene symbol: LOXHD1
  hgvsc: ENST00000582408.1:c.3264G>A
  hgvsp: ENST00000582408.1:c.3264G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381676
  ensembl transcript: ENST00000398686
  gene symbol: LOXHD1
  hgvsc: ENST00000398686.4:c.1500G>A
  hgvsp: ENST00000398686.4:c.1500G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000463285
  ensembl transcript: ENST00000579038
  gene symbol: LOXHD1
  hgvsc: ENST00000579038.1:c.3033+129G>A
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381707
  ensembl transcript: ENST00000398722
  gene symbol: LOXHD1
  hgvsc: ENST00000398722.4:c.5806+143G>A
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000444586
  ensembl transcript: ENST00000536736
  gene symbol: LOXHD1
  hgvsc: ENST00000536736.1:c.6597G>A
  hgvsp: ENST00000536736.1:c.6597G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2228
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 4796
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2299
  bin: 2.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6200
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gly2199Gly
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
reference allele: C
site quality: QD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

18-44057478-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44057478
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 44057478
    reference: chr 18
allele count: 0
allele frequency: 0.0e0
allele num: 17654
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000463285
  ensembl transcript: ENST00000579038
  gene symbol: LOXHD1
  hgvsc: ENST00000579038.1:c.3033+125G>C
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381676
  ensembl transcript: ENST00000398686
  gene symbol: LOXHD1
  hgvsc: ENST00000398686.4:c.1496G>C
  hgvsp: ENSP00000381676.4:p.Arg499Pro
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381707
  ensembl transcript: ENST00000398722
  gene symbol: LOXHD1
  hgvsc: ENST00000398722.4:c.5806+139G>C
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000409062
  ensembl transcript: ENST00000441893
  gene symbol: LOXHD1
  hgvsc: ENST00000441893.2:c.3392G>C
  hgvsp: ENSP00000409062.2:p.Arg1131Pro
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000387621
  ensembl transcript: ENST00000441551
  gene symbol: LOXHD1
  hgvsc: ENST00000441551.2:c.6161G>C
  hgvsp: ENSP00000387621.2:p.Arg2054Pro
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000461964
  ensembl transcript: ENST00000582408
  gene symbol: LOXHD1
  hgvsc: ENST00000582408.1:c.3260G>C
  hgvsp: ENSP00000461964.1:p.Arg1087Pro
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000444586
  ensembl transcript: ENST00000536736
  gene symbol: LOXHD1
  hgvsc: ENST00000536736.1:c.6593G>C
  hgvsp: ENSP00000444586.1:p.Arg2198Pro
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000300591
  ensembl transcript: ENST00000300591
  gene symbol: LOXHD1
  hgvsc: ENST00000300591.6:c.3307+139G>C
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381692
  ensembl transcript: ENST00000398705
  gene symbol: LOXHD1
  hgvsc: ENST00000398705.2:c.1371+125G>C
  variant of: http://identifiers.org/hgnc/26521
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 2323
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2232
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4798
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 824
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg2198Pro
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: DP

18-44057479-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44057479
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 44057479
    reference: chr 18
allele count: 1
allele frequency: 5.652911249293386e-5
allele num: 17690
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000300591
  ensembl transcript: ENST00000300591
  gene symbol: LOXHD1
  hgvsc: ENST00000300591.6:c.3307+138C>T
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381676
  ensembl transcript: ENST00000398686
  gene symbol: LOXHD1
  hgvsc: ENST00000398686.4:c.1495C>T
  hgvsp: ENSP00000381676.4:p.Arg499Trp
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381692
  ensembl transcript: ENST00000398705
  gene symbol: LOXHD1
  hgvsc: ENST00000398705.2:c.1371+124C>T
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000461964
  ensembl transcript: ENST00000582408
  gene symbol: LOXHD1
  hgvsc: ENST00000582408.1:c.3259C>T
  hgvsp: ENSP00000461964.1:p.Arg1087Trp
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000463285
  ensembl transcript: ENST00000579038
  gene symbol: LOXHD1
  hgvsc: ENST00000579038.1:c.3033+124C>T
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000387621
  ensembl transcript: ENST00000441551
  gene symbol: LOXHD1
  hgvsc: ENST00000441551.2:c.6160C>T
  hgvsp: ENSP00000387621.2:p.Arg2054Trp
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000409062
  ensembl transcript: ENST00000441893
  gene symbol: LOXHD1
  hgvsc: ENST00000441893.2:c.3391C>T
  hgvsp: ENSP00000409062.2:p.Arg1131Trp
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000444586
  ensembl transcript: ENST00000536736
  gene symbol: LOXHD1
  hgvsc: ENST00000536736.1:c.6592C>T
  hgvsp: ENSP00000444586.1:p.Arg2198Trp
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381707
  ensembl transcript: ENST00000398722
  gene symbol: LOXHD1
  hgvsc: ENST00000398722.4:c.5806+138C>T
  variant of: http://identifiers.org/hgnc/26521
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4804
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2263
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2335
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1988
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg2198Trp
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

18-44057480-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44057480
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 44057480
    reference: chr 18
allele count: 1
allele frequency: 5.643977875606727e-5
allele num: 17718
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000387621
  ensembl transcript: ENST00000441551
  gene symbol: LOXHD1
  hgvsc: ENST00000441551.2:c.6159G>A
  hgvsp: ENST00000441551.2:c.6159G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000300591
  ensembl transcript: ENST00000300591
  gene symbol: LOXHD1
  hgvsc: ENST00000300591.6:c.3307+137G>A
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000409062
  ensembl transcript: ENST00000441893
  gene symbol: LOXHD1
  hgvsc: ENST00000441893.2:c.3390G>A
  hgvsp: ENST00000441893.2:c.3390G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381692
  ensembl transcript: ENST00000398705
  gene symbol: LOXHD1
  hgvsc: ENST00000398705.2:c.1371+123G>A
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381676
  ensembl transcript: ENST00000398686
  gene symbol: LOXHD1
  hgvsc: ENST00000398686.4:c.1494G>A
  hgvsp: ENST00000398686.4:c.1494G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381707
  ensembl transcript: ENST00000398722
  gene symbol: LOXHD1
  hgvsc: ENST00000398722.4:c.5806+137G>A
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000444586
  ensembl transcript: ENST00000536736
  gene symbol: LOXHD1
  hgvsc: ENST00000536736.1:c.6591G>A
  hgvsp: ENST00000536736.1:c.6591G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000463285
  ensembl transcript: ENST00000579038
  gene symbol: LOXHD1
  hgvsc: ENST00000579038.1:c.3033+123G>A
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000461964
  ensembl transcript: ENST00000582408
  gene symbol: LOXHD1
  hgvsc: ENST00000582408.1:c.3258G>A
  hgvsp: ENST00000582408.1:c.3258G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2340
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2265
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4817
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 839
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6295
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Lys2197Lys
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ClippingRankSum

18-44057481-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44057481
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 44057481
    reference: chr 18
allele count: 1
allele frequency: 5.636978579481398e-5
allele num: 17740
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000300591
  ensembl transcript: ENST00000300591
  gene symbol: LOXHD1
  hgvsc: ENST00000300591.6:c.3307+136A>G
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000444586
  ensembl transcript: ENST00000536736
  gene symbol: LOXHD1
  hgvsc: ENST00000536736.1:c.6590A>G
  hgvsp: ENSP00000444586.1:p.Lys2197Arg
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000387621
  ensembl transcript: ENST00000441551
  gene symbol: LOXHD1
  hgvsc: ENST00000441551.2:c.6158A>G
  hgvsp: ENSP00000387621.2:p.Lys2053Arg
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381676
  ensembl transcript: ENST00000398686
  gene symbol: LOXHD1
  hgvsc: ENST00000398686.4:c.1493A>G
  hgvsp: ENSP00000381676.4:p.Lys498Arg
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000409062
  ensembl transcript: ENST00000441893
  gene symbol: LOXHD1
  hgvsc: ENST00000441893.2:c.3389A>G
  hgvsp: ENSP00000409062.2:p.Lys1130Arg
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381707
  ensembl transcript: ENST00000398722
  gene symbol: LOXHD1
  hgvsc: ENST00000398722.4:c.5806+136A>G
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000461964
  ensembl transcript: ENST00000582408
  gene symbol: LOXHD1
  hgvsc: ENST00000582408.1:c.3257A>G
  hgvsp: ENSP00000461964.1:p.Lys1086Arg
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000463285
  ensembl transcript: ENST00000579038
  gene symbol: LOXHD1
  hgvsc: ENST00000579038.1:c.3033+122A>G
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381692
  ensembl transcript: ENST00000398705
  gene symbol: LOXHD1
  hgvsc: ENST00000398705.2:c.1371+122A>G
  variant of: http://identifiers.org/hgnc/26521
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2341
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2295
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4831
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 846
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Lys2197Arg
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: DP

http://identifiers.org/exac.variant/18-44057494-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44057494
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 44057494
    reference: chr 18
allele count: 13
allele frequency: 7.623739150832747e-4
allele num: 17052
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381707
  ensembl transcript: ENST00000398722
  gene symbol: LOXHD1
  hgvsc: ENST00000398722.4:c.5806+123T>G
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381676
  ensembl transcript: ENST00000398686
  gene symbol: LOXHD1
  hgvsc: ENST00000398686.4:c.1480T>G
  hgvsp: ENSP00000381676.4:p.Trp494Gly
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000461964
  ensembl transcript: ENST00000582408
  gene symbol: LOXHD1
  hgvsc: ENST00000582408.1:c.3244T>G
  hgvsp: ENSP00000461964.1:p.Trp1082Gly
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381692
  ensembl transcript: ENST00000398705
  gene symbol: LOXHD1
  hgvsc: ENST00000398705.2:c.1371+109T>G
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000387621
  ensembl transcript: ENST00000441551
  gene symbol: LOXHD1
  hgvsc: ENST00000441551.2:c.6145T>G
  hgvsp: ENSP00000387621.2:p.Trp2049Gly
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000300591
  ensembl transcript: ENST00000300591
  gene symbol: LOXHD1
  hgvsc: ENST00000300591.6:c.3307+123T>G
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000444586
  ensembl transcript: ENST00000536736
  gene symbol: LOXHD1
  hgvsc: ENST00000536736.1:c.6577T>G
  hgvsp: ENSP00000444586.1:p.Trp2193Gly
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000463285
  ensembl transcript: ENST00000579038
  gene symbol: LOXHD1
  hgvsc: ENST00000579038.1:c.3033+109T>G
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000409062
  ensembl transcript: ENST00000441893
  gene symbol: LOXHD1
  hgvsc: ENST00000441893.2:c.3376T>G
  hgvsp: ENSP00000409062.2:p.Trp1126Gly
  variant of: http://identifiers.org/hgnc/26521
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2278
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4741
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2382
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 3.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1766
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1199
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 8.25e1
  variant carriers: 1
hgvs: p.Trp2193Gly
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP

18-44057498-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44057498
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 44057498
    reference: chr 18
allele count: 1
allele frequency: 5.410084397316598e-5
allele num: 18484
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000444586
  ensembl transcript: ENST00000536736
  gene symbol: LOXHD1
  hgvsc: ENST00000536736.1:c.6573C>A
  hgvsp: ENST00000536736.1:c.6573C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000409062
  ensembl transcript: ENST00000441893
  gene symbol: LOXHD1
  hgvsc: ENST00000441893.2:c.3372C>A
  hgvsp: ENST00000441893.2:c.3372C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000387621
  ensembl transcript: ENST00000441551
  gene symbol: LOXHD1
  hgvsc: ENST00000441551.2:c.6141C>A
  hgvsp: ENST00000441551.2:c.6141C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381676
  ensembl transcript: ENST00000398686
  gene symbol: LOXHD1
  hgvsc: ENST00000398686.4:c.1476C>A
  hgvsp: ENST00000398686.4:c.1476C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381707
  ensembl transcript: ENST00000398722
  gene symbol: LOXHD1
  hgvsc: ENST00000398722.4:c.5806+119C>A
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000300591
  ensembl transcript: ENST00000300591
  gene symbol: LOXHD1
  hgvsc: ENST00000300591.6:c.3307+119C>A
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000461964
  ensembl transcript: ENST00000582408
  gene symbol: LOXHD1
  hgvsc: ENST00000582408.1:c.3240C>A
  hgvsp: ENST00000582408.1:c.3240C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000463285
  ensembl transcript: ENST00000579038
  gene symbol: LOXHD1
  hgvsc: ENST00000579038.1:c.3033+105C>A
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381692
  ensembl transcript: ENST00000398705
  gene symbol: LOXHD1
  hgvsc: ENST00000398705.2:c.1371+105C>A
  variant of: http://identifiers.org/hgnc/26521
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2564
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2476
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4809
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6459
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gly2191Gly
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ

18-44057502-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44057502
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 44057502
    reference: chr 18
allele count: 1
allele frequency: 5.390254420008625e-5
allele num: 18552
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381692
  ensembl transcript: ENST00000398705
  gene symbol: LOXHD1
  hgvsc: ENST00000398705.2:c.1371+101G>C
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000463285
  ensembl transcript: ENST00000579038
  gene symbol: LOXHD1
  hgvsc: ENST00000579038.1:c.3033+101G>C
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000387621
  ensembl transcript: ENST00000441551
  gene symbol: LOXHD1
  hgvsc: ENST00000441551.2:c.6137G>C
  hgvsp: ENSP00000387621.2:p.Cys2046Ser
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381676
  ensembl transcript: ENST00000398686
  gene symbol: LOXHD1
  hgvsc: ENST00000398686.4:c.1472G>C
  hgvsp: ENSP00000381676.4:p.Cys491Ser
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000444586
  ensembl transcript: ENST00000536736
  gene symbol: LOXHD1
  hgvsc: ENST00000536736.1:c.6569G>C
  hgvsp: ENSP00000444586.1:p.Cys2190Ser
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000409062
  ensembl transcript: ENST00000441893
  gene symbol: LOXHD1
  hgvsc: ENST00000441893.2:c.3368G>C
  hgvsp: ENSP00000409062.2:p.Cys1123Ser
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000300591
  ensembl transcript: ENST00000300591
  gene symbol: LOXHD1
  hgvsc: ENST00000300591.6:c.3307+115G>C
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000461964
  ensembl transcript: ENST00000582408
  gene symbol: LOXHD1
  hgvsc: ENST00000582408.1:c.3236G>C
  hgvsp: ENSP00000461964.1:p.Cys1079Ser
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381707
  ensembl transcript: ENST00000398722
  gene symbol: LOXHD1
  hgvsc: ENST00000398722.4:c.5806+115G>C
  variant of: http://identifiers.org/hgnc/26521
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2593
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4844
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2482
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 959
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Cys2190Ser
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

18-44057507-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44057507
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 44057507
    reference: chr 18
allele count: 1
allele frequency: 5.368262830148164e-5
allele num: 18628
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000387621
  ensembl transcript: ENST00000441551
  gene symbol: LOXHD1
  hgvsc: ENST00000441551.2:c.6132C>T
  hgvsp: ENST00000441551.2:c.6132C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000444586
  ensembl transcript: ENST00000536736
  gene symbol: LOXHD1
  hgvsc: ENST00000536736.1:c.6564C>T
  hgvsp: ENST00000536736.1:c.6564C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381676
  ensembl transcript: ENST00000398686
  gene symbol: LOXHD1
  hgvsc: ENST00000398686.4:c.1467C>T
  hgvsp: ENST00000398686.4:c.1467C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381707
  ensembl transcript: ENST00000398722
  gene symbol: LOXHD1
  hgvsc: ENST00000398722.4:c.5806+110C>T
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000409062
  ensembl transcript: ENST00000441893
  gene symbol: LOXHD1
  hgvsc: ENST00000441893.2:c.3363C>T
  hgvsp: ENST00000441893.2:c.3363C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000461964
  ensembl transcript: ENST00000582408
  gene symbol: LOXHD1
  hgvsc: ENST00000582408.1:c.3231C>T
  hgvsp: ENST00000582408.1:c.3231C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000300591
  ensembl transcript: ENST00000300591
  gene symbol: LOXHD1
  hgvsc: ENST00000300591.6:c.3307+110C>T
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000463285
  ensembl transcript: ENST00000579038
  gene symbol: LOXHD1
  hgvsc: ENST00000579038.1:c.3033+96C>T
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381692
  ensembl transcript: ENST00000398705
  gene symbol: LOXHD1
  hgvsc: ENST00000398705.2:c.1371+96C>T
  variant of: http://identifiers.org/hgnc/26521
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2500
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2575
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4862
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Phe2188Phe
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: FS

18-44057514-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44057514
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 44057514
    reference: chr 18
allele count: 1
allele frequency: 5.328218243819267e-5
allele num: 18768
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000409062
  ensembl transcript: ENST00000441893
  gene symbol: LOXHD1
  hgvsc: ENST00000441893.2:c.3356C>T
  hgvsp: ENSP00000409062.2:p.Thr1119Ile
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000300591
  ensembl transcript: ENST00000300591
  gene symbol: LOXHD1
  hgvsc: ENST00000300591.6:c.3307+103C>T
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000463285
  ensembl transcript: ENST00000579038
  gene symbol: LOXHD1
  hgvsc: ENST00000579038.1:c.3033+89C>T
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381676
  ensembl transcript: ENST00000398686
  gene symbol: LOXHD1
  hgvsc: ENST00000398686.4:c.1460C>T
  hgvsp: ENSP00000381676.4:p.Thr487Ile
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381692
  ensembl transcript: ENST00000398705
  gene symbol: LOXHD1
  hgvsc: ENST00000398705.2:c.1371+89C>T
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000461964
  ensembl transcript: ENST00000582408
  gene symbol: LOXHD1
  hgvsc: ENST00000582408.1:c.3224C>T
  hgvsp: ENSP00000461964.1:p.Thr1075Ile
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000387621
  ensembl transcript: ENST00000441551
  gene symbol: LOXHD1
  hgvsc: ENST00000441551.2:c.6125C>T
  hgvsp: ENSP00000387621.2:p.Thr2042Ile
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000444586
  ensembl transcript: ENST00000536736
  gene symbol: LOXHD1
  hgvsc: ENST00000536736.1:c.6557C>T
  hgvsp: ENSP00000444586.1:p.Thr2186Ile
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381707
  ensembl transcript: ENST00000398722
  gene symbol: LOXHD1
  hgvsc: ENST00000398722.4:c.5806+103C>T
  variant of: http://identifiers.org/hgnc/26521
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4961
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2597
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2539
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 921
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Thr2186Ile
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum

18-44057516-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44057516
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 44057516
    reference: chr 18
allele count: 50
allele frequency: 2.658160552897395e-3
allele num: 18810
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000461964
  ensembl transcript: ENST00000582408
  gene symbol: LOXHD1
  hgvsc: ENST00000582408.1:c.3222C>T
  hgvsp: ENST00000582408.1:c.3222C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381692
  ensembl transcript: ENST00000398705
  gene symbol: LOXHD1
  hgvsc: ENST00000398705.2:c.1371+87C>T
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381707
  ensembl transcript: ENST00000398722
  gene symbol: LOXHD1
  hgvsc: ENST00000398722.4:c.5806+101C>T
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000409062
  ensembl transcript: ENST00000441893
  gene symbol: LOXHD1
  hgvsc: ENST00000441893.2:c.3354C>T
  hgvsp: ENST00000441893.2:c.3354C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000463285
  ensembl transcript: ENST00000579038
  gene symbol: LOXHD1
  hgvsc: ENST00000579038.1:c.3033+87C>T
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000300591
  ensembl transcript: ENST00000300591
  gene symbol: LOXHD1
  hgvsc: ENST00000300591.6:c.3307+101C>T
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000444586
  ensembl transcript: ENST00000536736
  gene symbol: LOXHD1
  hgvsc: ENST00000536736.1:c.6555C>T
  hgvsp: ENST00000536736.1:c.6555C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000387621
  ensembl transcript: ENST00000441551
  gene symbol: LOXHD1
  hgvsc: ENST00000441551.2:c.6123C>T
  hgvsp: ENST00000441551.2:c.6123C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381676
  ensembl transcript: ENST00000398686
  gene symbol: LOXHD1
  hgvsc: ENST00000398686.4:c.1458C>T
  hgvsp: ENST00000398686.4:c.1458C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4963
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2529
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2563
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 913
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2265
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala2185Ala
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS

18-44057521-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44057521
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 44057521
    reference: chr 18
allele count: 3
allele frequency: 1.588983050847458e-4
allele num: 18880
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381676
  ensembl transcript: ENST00000398686
  gene symbol: LOXHD1
  hgvsc: ENST00000398686.4:c.1453G>A
  hgvsp: ENSP00000381676.4:p.Val485Met
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000409062
  ensembl transcript: ENST00000441893
  gene symbol: LOXHD1
  hgvsc: ENST00000441893.2:c.3349G>A
  hgvsp: ENSP00000409062.2:p.Val1117Met
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000387621
  ensembl transcript: ENST00000441551
  gene symbol: LOXHD1
  hgvsc: ENST00000441551.2:c.6118G>A
  hgvsp: ENSP00000387621.2:p.Val2040Met
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381692
  ensembl transcript: ENST00000398705
  gene symbol: LOXHD1
  hgvsc: ENST00000398705.2:c.1371+82G>A
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000463285
  ensembl transcript: ENST00000579038
  gene symbol: LOXHD1
  hgvsc: ENST00000579038.1:c.3033+82G>A
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000444586
  ensembl transcript: ENST00000536736
  gene symbol: LOXHD1
  hgvsc: ENST00000536736.1:c.6550G>A
  hgvsp: ENSP00000444586.1:p.Val2184Met
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000461964
  ensembl transcript: ENST00000582408
  gene symbol: LOXHD1
  hgvsc: ENST00000582408.1:c.3217G>A
  hgvsp: ENSP00000461964.1:p.Val1073Met
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381707
  ensembl transcript: ENST00000398722
  gene symbol: LOXHD1
  hgvsc: ENST00000398722.4:c.5806+96G>A
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000300591
  ensembl transcript: ENST00000300591
  gene symbol: LOXHD1
  hgvsc: ENST00000300591.6:c.3307+96G>A
  variant of: http://identifiers.org/hgnc/26521
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4993
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2578
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2587
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Val2184Met
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: Latino
reference allele: C
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP

18-44057525-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44057525
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 44057525
    reference: chr 18
allele count: 10
allele frequency: 5.255965520866183e-4
allele num: 19026
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000463285
  ensembl transcript: ENST00000579038
  gene symbol: LOXHD1
  hgvsc: ENST00000579038.1:c.3033+78C>T
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000444586
  ensembl transcript: ENST00000536736
  gene symbol: LOXHD1
  hgvsc: ENST00000536736.1:c.6546C>T
  hgvsp: ENST00000536736.1:c.6546C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000300591
  ensembl transcript: ENST00000300591
  gene symbol: LOXHD1
  hgvsc: ENST00000300591.6:c.3307+92C>T
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000461964
  ensembl transcript: ENST00000582408
  gene symbol: LOXHD1
  hgvsc: ENST00000582408.1:c.3213C>T
  hgvsp: ENST00000582408.1:c.3213C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381676
  ensembl transcript: ENST00000398686
  gene symbol: LOXHD1
  hgvsc: ENST00000398686.4:c.1449C>T
  hgvsp: ENST00000398686.4:c.1449C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000387621
  ensembl transcript: ENST00000441551
  gene symbol: LOXHD1
  hgvsc: ENST00000441551.2:c.6114C>T
  hgvsp: ENST00000441551.2:c.6114C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381707
  ensembl transcript: ENST00000398722
  gene symbol: LOXHD1
  hgvsc: ENST00000398722.4:c.5806+92C>T
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000409062
  ensembl transcript: ENST00000441893
  gene symbol: LOXHD1
  hgvsc: ENST00000441893.2:c.3345C>T
  hgvsp: ENST00000441893.2:c.3345C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381692
  ensembl transcript: ENST00000398705
  gene symbol: LOXHD1
  hgvsc: ENST00000398705.2:c.1371+78C>T
  variant of: http://identifiers.org/hgnc/26521
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 958
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2637
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2575
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5088
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Thr2182Thr
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD

18-44057526-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44057526
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 44057526
    reference: chr 18
allele count: 3
allele frequency: 1.571503404924044e-4
allele num: 19090
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381676
  ensembl transcript: ENST00000398686
  gene symbol: LOXHD1
  hgvsc: ENST00000398686.4:c.1448C>T
  hgvsp: ENSP00000381676.4:p.Thr483Ile
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000409062
  ensembl transcript: ENST00000441893
  gene symbol: LOXHD1
  hgvsc: ENST00000441893.2:c.3344C>T
  hgvsp: ENSP00000409062.2:p.Thr1115Ile
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000444586
  ensembl transcript: ENST00000536736
  gene symbol: LOXHD1
  hgvsc: ENST00000536736.1:c.6545C>T
  hgvsp: ENSP00000444586.1:p.Thr2182Ile
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000461964
  ensembl transcript: ENST00000582408
  gene symbol: LOXHD1
  hgvsc: ENST00000582408.1:c.3212C>T
  hgvsp: ENSP00000461964.1:p.Thr1071Ile
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000387621
  ensembl transcript: ENST00000441551
  gene symbol: LOXHD1
  hgvsc: ENST00000441551.2:c.6113C>T
  hgvsp: ENSP00000387621.2:p.Thr2038Ile
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381707
  ensembl transcript: ENST00000398722
  gene symbol: LOXHD1
  hgvsc: ENST00000398722.4:c.5806+91C>T
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000300591
  ensembl transcript: ENST00000300591
  gene symbol: LOXHD1
  hgvsc: ENST00000300591.6:c.3307+91C>T
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381692
  ensembl transcript: ENST00000398705
  gene symbol: LOXHD1
  hgvsc: ENST00000398705.2:c.1371+77C>T
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000463285
  ensembl transcript: ENST00000579038
  gene symbol: LOXHD1
  hgvsc: ENST00000579038.1:c.3033+77C>T
  variant of: http://identifiers.org/hgnc/26521
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5122
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2560
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2647
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1018
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Thr2182Ile
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD

18-44057531-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44057531
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 44057531
    reference: chr 18
allele count: 3
allele frequency: 1.560874089490114e-4
allele num: 19220
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381676
  ensembl transcript: ENST00000398686
  gene symbol: LOXHD1
  hgvsc: ENST00000398686.4:c.1443C>T
  hgvsp: ENST00000398686.4:c.1443C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000463285
  ensembl transcript: ENST00000579038
  gene symbol: LOXHD1
  hgvsc: ENST00000579038.1:c.3033+72C>T
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381692
  ensembl transcript: ENST00000398705
  gene symbol: LOXHD1
  hgvsc: ENST00000398705.2:c.1371+72C>T
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381707
  ensembl transcript: ENST00000398722
  gene symbol: LOXHD1
  hgvsc: ENST00000398722.4:c.5806+86C>T
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000409062
  ensembl transcript: ENST00000441893
  gene symbol: LOXHD1
  hgvsc: ENST00000441893.2:c.3339C>T
  hgvsp: ENST00000441893.2:c.3339C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000461964
  ensembl transcript: ENST00000582408
  gene symbol: LOXHD1
  hgvsc: ENST00000582408.1:c.3207C>T
  hgvsp: ENST00000582408.1:c.3207C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000444586
  ensembl transcript: ENST00000536736
  gene symbol: LOXHD1
  hgvsc: ENST00000536736.1:c.6540C>T
  hgvsp: ENST00000536736.1:c.6540C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000387621
  ensembl transcript: ENST00000441551
  gene symbol: LOXHD1
  hgvsc: ENST00000441551.2:c.6108C>T
  hgvsp: ENST00000441551.2:c.6108C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000300591
  ensembl transcript: ENST00000300591
  gene symbol: LOXHD1
  hgvsc: ENST00000300591.6:c.3307+86C>T
  variant of: http://identifiers.org/hgnc/26521
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5185
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2550
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2703
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 959
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Thr2180Thr
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

18-44057534-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44057534
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 44057534
    reference: chr 18
allele count: 3
allele frequency: 1.553599171413775e-4
allele num: 19310
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000461964
  ensembl transcript: ENST00000582408
  gene symbol: LOXHD1
  hgvsc: ENST00000582408.1:c.3204C>T
  hgvsp: ENST00000582408.1:c.3204C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000387621
  ensembl transcript: ENST00000441551
  gene symbol: LOXHD1
  hgvsc: ENST00000441551.2:c.6105C>T
  hgvsp: ENST00000441551.2:c.6105C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000409062
  ensembl transcript: ENST00000441893
  gene symbol: LOXHD1
  hgvsc: ENST00000441893.2:c.3336C>T
  hgvsp: ENST00000441893.2:c.3336C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381676
  ensembl transcript: ENST00000398686
  gene symbol: LOXHD1
  hgvsc: ENST00000398686.4:c.1440C>T
  hgvsp: ENST00000398686.4:c.1440C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000444586
  ensembl transcript: ENST00000536736
  gene symbol: LOXHD1
  hgvsc: ENST00000536736.1:c.6537C>T
  hgvsp: ENST00000536736.1:c.6537C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000463285
  ensembl transcript: ENST00000579038
  gene symbol: LOXHD1
  hgvsc: ENST00000579038.1:c.3033+69C>T
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381707
  ensembl transcript: ENST00000398722
  gene symbol: LOXHD1
  hgvsc: ENST00000398722.4:c.5806+83C>T
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381692
  ensembl transcript: ENST00000398705
  gene symbol: LOXHD1
  hgvsc: ENST00000398705.2:c.1371+69C>T
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000300591
  ensembl transcript: ENST00000300591
  gene symbol: LOXHD1
  hgvsc: ENST00000300591.6:c.3307+83C>T
  variant of: http://identifiers.org/hgnc/26521
canonical: false
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2705
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2575
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5210
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2402
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 958
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1027
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asn2179Asn
num of homozygotes: 1
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

18-44057588-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44057588
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 44057588
    reference: chr 18
allele count: 0
allele frequency: 0.0e0
allele num: 20468
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000444586
  ensembl transcript: ENST00000536736
  gene symbol: LOXHD1
  hgvsc: ENST00000536736.1:c.6483C>T
  hgvsp: ENST00000536736.1:c.6483C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000409062
  ensembl transcript: ENST00000441893
  gene symbol: LOXHD1
  hgvsc: ENST00000441893.2:c.3282C>T
  hgvsp: ENST00000441893.2:c.3282C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381676
  ensembl transcript: ENST00000398686
  gene symbol: LOXHD1
  hgvsc: ENST00000398686.4:c.1386C>T
  hgvsp: ENST00000398686.4:c.1386C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381692
  ensembl transcript: ENST00000398705
  gene symbol: LOXHD1
  hgvsc: ENST00000398705.2:c.1371+15C>T
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000461964
  ensembl transcript: ENST00000582408
  gene symbol: LOXHD1
  hgvsc: ENST00000582408.1:c.3150C>T
  hgvsp: ENST00000582408.1:c.3150C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000463285
  ensembl transcript: ENST00000579038
  gene symbol: LOXHD1
  hgvsc: ENST00000579038.1:c.3033+15C>T
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000300591
  ensembl transcript: ENST00000300591
  gene symbol: LOXHD1
  hgvsc: ENST00000300591.6:c.3307+29C>T
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000387621
  ensembl transcript: ENST00000441551
  gene symbol: LOXHD1
  hgvsc: ENST00000441551.2:c.6051C>T
  hgvsp: ENST00000441551.2:c.6051C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381707
  ensembl transcript: ENST00000398722
  gene symbol: LOXHD1
  hgvsc: ENST00000398722.4:c.5806+29C>T
  variant of: http://identifiers.org/hgnc/26521
canonical: false
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2411
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3129
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5374
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7657
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1021
  bin: 6.75e1
  variant carriers: 0
hgvs: p.His2161His
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

18-44057599-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44057599
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 44057599
    reference: chr 18
allele count: 1
allele frequency: 4.825323296660876e-5
allele num: 20724
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381676
  ensembl transcript: ENST00000398686
  gene symbol: LOXHD1
  hgvsc: ENST00000398686.4:c.1375C>T
  hgvsp: ENSP00000381676.4:p.Arg459Cys
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381707
  ensembl transcript: ENST00000398722
  gene symbol: LOXHD1
  hgvsc: ENST00000398722.4:c.5806+18C>T
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000444586
  ensembl transcript: ENST00000536736
  gene symbol: LOXHD1
  hgvsc: ENST00000536736.1:c.6472C>T
  hgvsp: ENSP00000444586.1:p.Arg2158Cys
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381692
  ensembl transcript: ENST00000398705
  gene symbol: LOXHD1
  hgvsc: ENST00000398705.2:c.1371+4C>T
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000409062
  ensembl transcript: ENST00000441893
  gene symbol: LOXHD1
  hgvsc: ENST00000441893.2:c.3271C>T
  hgvsp: ENSP00000409062.2:p.Arg1091Cys
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000461964
  ensembl transcript: ENST00000582408
  gene symbol: LOXHD1
  hgvsc: ENST00000582408.1:c.3139C>T
  hgvsp: ENSP00000461964.1:p.Arg1047Cys
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000387621
  ensembl transcript: ENST00000441551
  gene symbol: LOXHD1
  hgvsc: ENST00000441551.2:c.6040C>T
  hgvsp: ENSP00000387621.2:p.Arg2014Cys
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000463285
  ensembl transcript: ENST00000579038
  gene symbol: LOXHD1
  hgvsc: ENST00000579038.1:c.3033+4C>T
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000300591
  ensembl transcript: ENST00000300591
  gene symbol: LOXHD1
  hgvsc: ENST00000300591.6:c.3307+18C>T
  variant of: http://identifiers.org/hgnc/26521
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5515
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2075
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3194
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1892
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg2158Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: African
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ

18-44057604-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44057604
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 44057604
    reference: chr 18
allele count: 1
allele frequency: 4.78102887741442e-5
allele num: 20916
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000409062
  ensembl transcript: ENST00000441893
  gene symbol: LOXHD1
  hgvsc: ENST00000441893.2:c.3266A>T
  hgvsp: ENSP00000409062.2:p.Lys1089Met
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000444586
  ensembl transcript: ENST00000536736
  gene symbol: LOXHD1
  hgvsc: ENST00000536736.1:c.6467A>T
  hgvsp: ENSP00000444586.1:p.Lys2156Met
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381692
  ensembl transcript: ENST00000398705
  gene symbol: LOXHD1
  hgvsc: ENST00000398705.2:c.1370A>T
  hgvsp: ENSP00000381692.2:p.Lys457Met
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381707
  ensembl transcript: ENST00000398722
  gene symbol: LOXHD1
  hgvsc: ENST00000398722.4:c.5806+13A>T
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000300591
  ensembl transcript: ENST00000300591
  gene symbol: LOXHD1
  hgvsc: ENST00000300591.6:c.3307+13A>T
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000461964
  ensembl transcript: ENST00000582408
  gene symbol: LOXHD1
  hgvsc: ENST00000582408.1:c.3134A>T
  hgvsp: ENSP00000461964.1:p.Lys1045Met
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000387621
  ensembl transcript: ENST00000441551
  gene symbol: LOXHD1
  hgvsc: ENST00000441551.2:c.6035A>T
  hgvsp: ENSP00000387621.2:p.Lys2012Met
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381676
  ensembl transcript: ENST00000398686
  gene symbol: LOXHD1
  hgvsc: ENST00000398686.4:c.1370A>T
  hgvsp: ENSP00000381676.4:p.Lys457Met
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000463285
  ensembl transcript: ENST00000579038
  gene symbol: LOXHD1
  hgvsc: ENST00000579038.1:c.3032A>T
  hgvsp: ENSP00000463285.1:p.Lys1011Met
  variant of: http://identifiers.org/hgnc/26521
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2023
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5610
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3220
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Lys2012Met
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ

18-44057608-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44057608
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 44057608
    reference: chr 18
allele count: 2
allele frequency: 9.509319132750095e-5
allele num: 21032
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000300591
  ensembl transcript: ENST00000300591
  gene symbol: LOXHD1
  hgvsc: ENST00000300591.6:c.3307+9C>T
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000409062
  ensembl transcript: ENST00000441893
  gene symbol: LOXHD1
  hgvsc: ENST00000441893.2:c.3262C>T
  hgvsp: ENSP00000409062.2:p.Arg1088Cys
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000461964
  ensembl transcript: ENST00000582408
  gene symbol: LOXHD1
  hgvsc: ENST00000582408.1:c.3130C>T
  hgvsp: ENSP00000461964.1:p.Arg1044Cys
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381676
  ensembl transcript: ENST00000398686
  gene symbol: LOXHD1
  hgvsc: ENST00000398686.4:c.1366C>T
  hgvsp: ENSP00000381676.4:p.Arg456Cys
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000387621
  ensembl transcript: ENST00000441551
  gene symbol: LOXHD1
  hgvsc: ENST00000441551.2:c.6031C>T
  hgvsp: ENSP00000387621.2:p.Arg2011Cys
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381707
  ensembl transcript: ENST00000398722
  gene symbol: LOXHD1
  hgvsc: ENST00000398722.4:c.5806+9C>T
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000463285
  ensembl transcript: ENST00000579038
  gene symbol: LOXHD1
  hgvsc: ENST00000579038.1:c.3028C>T
  hgvsp: ENSP00000463285.1:p.Arg1010Cys
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000444586
  ensembl transcript: ENST00000536736
  gene symbol: LOXHD1
  hgvsc: ENST00000536736.1:c.6463C>T
  hgvsp: ENSP00000444586.1:p.Arg2155Cys
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381692
  ensembl transcript: ENST00000398705
  gene symbol: LOXHD1
  hgvsc: ENST00000398705.2:c.1366C>T
  hgvsp: ENSP00000381692.2:p.Arg456Cys
  variant of: http://identifiers.org/hgnc/26521
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3234
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1957
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5671
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8036
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1807
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg2011Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: African
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ

18-44057627-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44057627
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 44057627
    reference: chr 18
allele count: 2
allele frequency: 9.30925339787749e-5
allele num: 21484
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000463285
  ensembl transcript: ENST00000579038
  gene symbol: LOXHD1
  hgvsc: ENST00000579038.1:c.3009G>A
  hgvsp: ENST00000579038.1:c.3009G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000461964
  ensembl transcript: ENST00000582408
  gene symbol: LOXHD1
  hgvsc: ENST00000582408.1:c.3111G>A
  hgvsp: ENST00000582408.1:c.3111G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000300591
  ensembl transcript: ENST00000300591
  gene symbol: LOXHD1
  hgvsc: ENST00000300591.6:c.3297G>A
  hgvsp: ENST00000300591.6:c.3297G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381676
  ensembl transcript: ENST00000398686
  gene symbol: LOXHD1
  hgvsc: ENST00000398686.4:c.1347G>A
  hgvsp: ENST00000398686.4:c.1347G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000444586
  ensembl transcript: ENST00000536736
  gene symbol: LOXHD1
  hgvsc: ENST00000536736.1:c.6444G>A
  hgvsp: ENST00000536736.1:c.6444G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381692
  ensembl transcript: ENST00000398705
  gene symbol: LOXHD1
  hgvsc: ENST00000398705.2:c.1347G>A
  hgvsp: ENST00000398705.2:c.1347G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000409062
  ensembl transcript: ENST00000441893
  gene symbol: LOXHD1
  hgvsc: ENST00000441893.2:c.3243G>A
  hgvsp: ENST00000441893.2:c.3243G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000387621
  ensembl transcript: ENST00000441551
  gene symbol: LOXHD1
  hgvsc: ENST00000441551.2:c.6012G>A
  hgvsp: ENST00000441551.2:c.6012G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381707
  ensembl transcript: ENST00000398722
  gene symbol: LOXHD1
  hgvsc: ENST00000398722.4:c.5796G>A
  hgvsp: ENST00000398722.4:c.5796G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3350
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5861
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 958
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1713
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Thr1099Thr
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

18-44057628-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44057628
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 44057628
    reference: chr 18
allele count: 1
allele frequency: 4.647704034207102e-5
allele num: 21516
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000461964
  ensembl transcript: ENST00000582408
  gene symbol: LOXHD1
  hgvsc: ENST00000582408.1:c.3110C>T
  hgvsp: ENSP00000461964.1:p.Thr1037Met
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000300591
  ensembl transcript: ENST00000300591
  gene symbol: LOXHD1
  hgvsc: ENST00000300591.6:c.3296C>T
  hgvsp: ENSP00000300591.6:p.Thr1099Met
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000387621
  ensembl transcript: ENST00000441551
  gene symbol: LOXHD1
  hgvsc: ENST00000441551.2:c.6011C>T
  hgvsp: ENSP00000387621.2:p.Thr2004Met
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000409062
  ensembl transcript: ENST00000441893
  gene symbol: LOXHD1
  hgvsc: ENST00000441893.2:c.3242C>T
  hgvsp: ENSP00000409062.2:p.Thr1081Met
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000444586
  ensembl transcript: ENST00000536736
  gene symbol: LOXHD1
  hgvsc: ENST00000536736.1:c.6443C>T
  hgvsp: ENSP00000444586.1:p.Thr2148Met
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381707
  ensembl transcript: ENST00000398722
  gene symbol: LOXHD1
  hgvsc: ENST00000398722.4:c.5795C>T
  hgvsp: ENSP00000381707.4:p.Thr1932Met
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000463285
  ensembl transcript: ENST00000579038
  gene symbol: LOXHD1
  hgvsc: ENST00000579038.1:c.3008C>T
  hgvsp: ENSP00000463285.1:p.Thr1003Met
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381676
  ensembl transcript: ENST00000398686
  gene symbol: LOXHD1
  hgvsc: ENST00000398686.4:c.1346C>T
  hgvsp: ENSP00000381676.4:p.Thr449Met
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381692
  ensembl transcript: ENST00000398705
  gene symbol: LOXHD1
  hgvsc: ENST00000398705.2:c.1346C>T
  hgvsp: ENSP00000381692.2:p.Thr449Met
  variant of: http://identifiers.org/hgnc/26521
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5880
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3358
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1691
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1567
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Thr1099Met
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: QD

18-44057636-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44057636
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 44057636
    reference: chr 18
allele count: 1
allele frequency: 4.626630887387804e-5
allele num: 21614
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000387621
  ensembl transcript: ENST00000441551
  gene symbol: LOXHD1
  hgvsc: ENST00000441551.2:c.6003C>T
  hgvsp: ENST00000441551.2:c.6003C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000409062
  ensembl transcript: ENST00000441893
  gene symbol: LOXHD1
  hgvsc: ENST00000441893.2:c.3234C>T
  hgvsp: ENST00000441893.2:c.3234C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381707
  ensembl transcript: ENST00000398722
  gene symbol: LOXHD1
  hgvsc: ENST00000398722.4:c.5787C>T
  hgvsp: ENST00000398722.4:c.5787C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000444586
  ensembl transcript: ENST00000536736
  gene symbol: LOXHD1
  hgvsc: ENST00000536736.1:c.6435C>T
  hgvsp: ENST00000536736.1:c.6435C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381692
  ensembl transcript: ENST00000398705
  gene symbol: LOXHD1
  hgvsc: ENST00000398705.2:c.1338C>T
  hgvsp: ENST00000398705.2:c.1338C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000463285
  ensembl transcript: ENST00000579038
  gene symbol: LOXHD1
  hgvsc: ENST00000579038.1:c.3000C>T
  hgvsp: ENST00000579038.1:c.3000C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000300591
  ensembl transcript: ENST00000300591
  gene symbol: LOXHD1
  hgvsc: ENST00000300591.6:c.3288C>T
  hgvsp: ENST00000300591.6:c.3288C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000461964
  ensembl transcript: ENST00000582408
  gene symbol: LOXHD1
  hgvsc: ENST00000582408.1:c.3102C>T
  hgvsp: ENST00000582408.1:c.3102C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381676
  ensembl transcript: ENST00000398686
  gene symbol: LOXHD1
  hgvsc: ENST00000398686.4:c.1338C>T
  hgvsp: ENST00000398686.4:c.1338C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3392
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5935
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1652
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Phe1096Phe
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP

18-44057643-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44057643
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 44057643
    reference: chr 18
allele count: 1
allele frequency: 4.614248800295312e-5
allele num: 21672
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381692
  ensembl transcript: ENST00000398705
  gene symbol: LOXHD1
  hgvsc: ENST00000398705.2:c.1331G>A
  hgvsp: ENSP00000381692.2:p.Arg444His
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000300591
  ensembl transcript: ENST00000300591
  gene symbol: LOXHD1
  hgvsc: ENST00000300591.6:c.3281G>A
  hgvsp: ENSP00000300591.6:p.Arg1094His
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381676
  ensembl transcript: ENST00000398686
  gene symbol: LOXHD1
  hgvsc: ENST00000398686.4:c.1331G>A
  hgvsp: ENSP00000381676.4:p.Arg444His
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000409062
  ensembl transcript: ENST00000441893
  gene symbol: LOXHD1
  hgvsc: ENST00000441893.2:c.3227G>A
  hgvsp: ENSP00000409062.2:p.Arg1076His
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381707
  ensembl transcript: ENST00000398722
  gene symbol: LOXHD1
  hgvsc: ENST00000398722.4:c.5780G>A
  hgvsp: ENSP00000381707.4:p.Arg1927His
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000444586
  ensembl transcript: ENST00000536736
  gene symbol: LOXHD1
  hgvsc: ENST00000536736.1:c.6428G>A
  hgvsp: ENSP00000444586.1:p.Arg2143His
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000387621
  ensembl transcript: ENST00000441551
  gene symbol: LOXHD1
  hgvsc: ENST00000441551.2:c.5996G>A
  hgvsp: ENSP00000387621.2:p.Arg1999His
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000461964
  ensembl transcript: ENST00000582408
  gene symbol: LOXHD1
  hgvsc: ENST00000582408.1:c.3095G>A
  hgvsp: ENSP00000461964.1:p.Arg1032His
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000463285
  ensembl transcript: ENST00000579038
  gene symbol: LOXHD1
  hgvsc: ENST00000579038.1:c.2993G>A
  hgvsp: ENSP00000463285.1:p.Arg998His
  variant of: http://identifiers.org/hgnc/26521
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1609
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3423
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5950
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg1094His
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff

18-44057644-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44057644
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 44057644
    reference: chr 18
allele count: 1
allele frequency: 4.611269943742507e-5
allele num: 21686
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000300591
  ensembl transcript: ENST00000300591
  gene symbol: LOXHD1
  hgvsc: ENST00000300591.6:c.3280C>T
  hgvsp: ENSP00000300591.6:p.Arg1094Cys
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000409062
  ensembl transcript: ENST00000441893
  gene symbol: LOXHD1
  hgvsc: ENST00000441893.2:c.3226C>T
  hgvsp: ENSP00000409062.2:p.Arg1076Cys
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381692
  ensembl transcript: ENST00000398705
  gene symbol: LOXHD1
  hgvsc: ENST00000398705.2:c.1330C>T
  hgvsp: ENSP00000381692.2:p.Arg444Cys
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000463285
  ensembl transcript: ENST00000579038
  gene symbol: LOXHD1
  hgvsc: ENST00000579038.1:c.2992C>T
  hgvsp: ENSP00000463285.1:p.Arg998Cys
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000444586
  ensembl transcript: ENST00000536736
  gene symbol: LOXHD1
  hgvsc: ENST00000536736.1:c.6427C>T
  hgvsp: ENSP00000444586.1:p.Arg2143Cys
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381707
  ensembl transcript: ENST00000398722
  gene symbol: LOXHD1
  hgvsc: ENST00000398722.4:c.5779C>T
  hgvsp: ENSP00000381707.4:p.Arg1927Cys
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381676
  ensembl transcript: ENST00000398686
  gene symbol: LOXHD1
  hgvsc: ENST00000398686.4:c.1330C>T
  hgvsp: ENSP00000381676.4:p.Arg444Cys
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000387621
  ensembl transcript: ENST00000441551
  gene symbol: LOXHD1
  hgvsc: ENST00000441551.2:c.5995C>T
  hgvsp: ENSP00000387621.2:p.Arg1999Cys
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000461964
  ensembl transcript: ENST00000582408
  gene symbol: LOXHD1
  hgvsc: ENST00000582408.1:c.3094C>T
  hgvsp: ENSP00000461964.1:p.Arg1032Cys
  variant of: http://identifiers.org/hgnc/26521
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3437
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5950
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg1094Cys
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: Latino
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD

18-44057654-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44057654
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 44057654
    reference: chr 18
allele count: 1
allele frequency: 4.598123965422108e-5
allele num: 21748
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000387621
  ensembl transcript: ENST00000441551
  gene symbol: LOXHD1
  hgvsc: ENST00000441551.2:c.5985C>A
  hgvsp: ENST00000441551.2:c.5985C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000461964
  ensembl transcript: ENST00000582408
  gene symbol: LOXHD1
  hgvsc: ENST00000582408.1:c.3084C>A
  hgvsp: ENST00000582408.1:c.3084C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381692
  ensembl transcript: ENST00000398705
  gene symbol: LOXHD1
  hgvsc: ENST00000398705.2:c.1320C>A
  hgvsp: ENST00000398705.2:c.1320C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000463285
  ensembl transcript: ENST00000579038
  gene symbol: LOXHD1
  hgvsc: ENST00000579038.1:c.2982C>A
  hgvsp: ENST00000579038.1:c.2982C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000409062
  ensembl transcript: ENST00000441893
  gene symbol: LOXHD1
  hgvsc: ENST00000441893.2:c.3216C>A
  hgvsp: ENST00000441893.2:c.3216C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381676
  ensembl transcript: ENST00000398686
  gene symbol: LOXHD1
  hgvsc: ENST00000398686.4:c.1320C>A
  hgvsp: ENST00000398686.4:c.1320C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000300591
  ensembl transcript: ENST00000300591
  gene symbol: LOXHD1
  hgvsc: ENST00000300591.6:c.3270C>A
  hgvsp: ENST00000300591.6:c.3270C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381707
  ensembl transcript: ENST00000398722
  gene symbol: LOXHD1
  hgvsc: ENST00000398722.4:c.5769C>A
  hgvsp: ENST00000398722.4:c.5769C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000444586
  ensembl transcript: ENST00000536736
  gene symbol: LOXHD1
  hgvsc: ENST00000536736.1:c.6417C>A
  hgvsp: ENST00000536736.1:c.6417C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5972
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3449
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1118
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gly1090Gly
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

18-44057658-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44057658
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 44057658
    reference: chr 18
allele count: 24
allele frequency: 1.102130786186628e-3
allele num: 21776
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381692
  ensembl transcript: ENST00000398705
  gene symbol: LOXHD1
  hgvsc: ENST00000398705.2:c.1316G>A
  hgvsp: ENSP00000381692.2:p.Arg439Gln
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000444586
  ensembl transcript: ENST00000536736
  gene symbol: LOXHD1
  hgvsc: ENST00000536736.1:c.6413G>A
  hgvsp: ENSP00000444586.1:p.Arg2138Gln
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381676
  ensembl transcript: ENST00000398686
  gene symbol: LOXHD1
  hgvsc: ENST00000398686.4:c.1316G>A
  hgvsp: ENSP00000381676.4:p.Arg439Gln
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381707
  ensembl transcript: ENST00000398722
  gene symbol: LOXHD1
  hgvsc: ENST00000398722.4:c.5765G>A
  hgvsp: ENSP00000381707.4:p.Arg1922Gln
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000387621
  ensembl transcript: ENST00000441551
  gene symbol: LOXHD1
  hgvsc: ENST00000441551.2:c.5981G>A
  hgvsp: ENSP00000387621.2:p.Arg1994Gln
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000409062
  ensembl transcript: ENST00000441893
  gene symbol: LOXHD1
  hgvsc: ENST00000441893.2:c.3212G>A
  hgvsp: ENSP00000409062.2:p.Arg1071Gln
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000461964
  ensembl transcript: ENST00000582408
  gene symbol: LOXHD1
  hgvsc: ENST00000582408.1:c.3080G>A
  hgvsp: ENSP00000461964.1:p.Arg1027Gln
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000300591
  ensembl transcript: ENST00000300591
  gene symbol: LOXHD1
  hgvsc: ENST00000300591.6:c.3266G>A
  hgvsp: ENSP00000300591.6:p.Arg1089Gln
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000463285
  ensembl transcript: ENST00000579038
  gene symbol: LOXHD1
  hgvsc: ENST00000579038.1:c.2978G>A
  hgvsp: ENSP00000463285.1:p.Arg993Gln
  variant of: http://identifiers.org/hgnc/26521
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3463
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5961
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1584
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1422
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8539
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg1089Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff

18-44057662-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44057662
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 44057662
    reference: chr 18
allele count: 2
allele frequency: 9.169264624977077e-5
allele num: 21812
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381692
  ensembl transcript: ENST00000398705
  gene symbol: LOXHD1
  hgvsc: ENST00000398705.2:c.1312G>A
  hgvsp: ENSP00000381692.2:p.Glu438Lys
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381676
  ensembl transcript: ENST00000398686
  gene symbol: LOXHD1
  hgvsc: ENST00000398686.4:c.1312G>A
  hgvsp: ENSP00000381676.4:p.Glu438Lys
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000461964
  ensembl transcript: ENST00000582408
  gene symbol: LOXHD1
  hgvsc: ENST00000582408.1:c.3076G>A
  hgvsp: ENSP00000461964.1:p.Glu1026Lys
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000444586
  ensembl transcript: ENST00000536736
  gene symbol: LOXHD1
  hgvsc: ENST00000536736.1:c.6409G>A
  hgvsp: ENSP00000444586.1:p.Glu2137Lys
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000387621
  ensembl transcript: ENST00000441551
  gene symbol: LOXHD1
  hgvsc: ENST00000441551.2:c.5977G>A
  hgvsp: ENSP00000387621.2:p.Glu1993Lys
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000409062
  ensembl transcript: ENST00000441893
  gene symbol: LOXHD1
  hgvsc: ENST00000441893.2:c.3208G>A
  hgvsp: ENSP00000409062.2:p.Glu1070Lys
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000300591
  ensembl transcript: ENST00000300591
  gene symbol: LOXHD1
  hgvsc: ENST00000300591.6:c.3262G>A
  hgvsp: ENSP00000300591.6:p.Glu1088Lys
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000463285
  ensembl transcript: ENST00000579038
  gene symbol: LOXHD1
  hgvsc: ENST00000579038.1:c.2974G>A
  hgvsp: ENSP00000463285.1:p.Glu992Lys
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381707
  ensembl transcript: ENST00000398722
  gene symbol: LOXHD1
  hgvsc: ENST00000398722.4:c.5761G>A
  hgvsp: ENSP00000381707.4:p.Glu1921Lys
  variant of: http://identifiers.org/hgnc/26521
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1618
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5971
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3484
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8585
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Glu1088Lys
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: C
site quality: QD
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum

18-44057673-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44057673
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 44057673
    reference: chr 18
allele count: 1048
allele frequency: 4.783204016430854e-2
allele num: 21910
alternate allele: T
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381692
  ensembl transcript: ENST00000398705
  gene symbol: LOXHD1
  hgvsc: ENST00000398705.2:c.1301G>A
  hgvsp: ENSP00000381692.2:p.Arg434His
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000409062
  ensembl transcript: ENST00000441893
  gene symbol: LOXHD1
  hgvsc: ENST00000441893.2:c.3197G>A
  hgvsp: ENSP00000409062.2:p.Arg1066His
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000463285
  ensembl transcript: ENST00000579038
  gene symbol: LOXHD1
  hgvsc: ENST00000579038.1:c.2963G>A
  hgvsp: ENSP00000463285.1:p.Arg988His
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381676
  ensembl transcript: ENST00000398686
  gene symbol: LOXHD1
  hgvsc: ENST00000398686.4:c.1301G>A
  hgvsp: ENSP00000381676.4:p.Arg434His
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: true
  clinical significance: benign
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000300591
  ensembl transcript: ENST00000300591
  gene symbol: LOXHD1
  hgvsc: ENST00000300591.6:c.3251G>A
  hgvsp: ENSP00000300591.6:p.Arg1084His
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000387621
  ensembl transcript: ENST00000441551
  gene symbol: LOXHD1
  hgvsc: ENST00000441551.2:c.5966G>A
  hgvsp: ENSP00000387621.2:p.Arg1989His
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381707
  ensembl transcript: ENST00000398722
  gene symbol: LOXHD1
  hgvsc: ENST00000398722.4:c.5750G>A
  hgvsp: ENSP00000381707.4:p.Arg1917His
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000461964
  ensembl transcript: ENST00000582408
  gene symbol: LOXHD1
  hgvsc: ENST00000582408.1:c.3065G>A
  hgvsp: ENSP00000461964.1:p.Arg1022His
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000444586
  ensembl transcript: ENST00000536736
  gene symbol: LOXHD1
  hgvsc: ENST00000536736.1:c.6398G>A
  hgvsp: ENSP00000444586.1:p.Arg2133His
  variant of: http://identifiers.org/hgnc/26521
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 4.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 3.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 1518
  bin: 2.5e0
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 7.5e0
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 3237
  bin: 2.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 9.75e1
  variant carriers: 607
genotype depth: GenotypeDepth
  all individuals: 5535
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 3.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 5
hgvs: p.Arg1084His
num of homozygotes: 38
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQ

18-44057674-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44057674
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 44057674
    reference: chr 18
allele count: 1
allele frequency: 4.562876437306077e-5
allele num: 21916
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000444586
  ensembl transcript: ENST00000536736
  gene symbol: LOXHD1
  hgvsc: ENST00000536736.1:c.6397C>T
  hgvsp: ENSP00000444586.1:p.Arg2133Cys
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381676
  ensembl transcript: ENST00000398686
  gene symbol: LOXHD1
  hgvsc: ENST00000398686.4:c.1300C>T
  hgvsp: ENSP00000381676.4:p.Arg434Cys
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000300591
  ensembl transcript: ENST00000300591
  gene symbol: LOXHD1
  hgvsc: ENST00000300591.6:c.3250C>T
  hgvsp: ENSP00000300591.6:p.Arg1084Cys
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000463285
  ensembl transcript: ENST00000579038
  gene symbol: LOXHD1
  hgvsc: ENST00000579038.1:c.2962C>T
  hgvsp: ENSP00000463285.1:p.Arg988Cys
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000409062
  ensembl transcript: ENST00000441893
  gene symbol: LOXHD1
  hgvsc: ENST00000441893.2:c.3196C>T
  hgvsp: ENSP00000409062.2:p.Arg1066Cys
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381707
  ensembl transcript: ENST00000398722
  gene symbol: LOXHD1
  hgvsc: ENST00000398722.4:c.5749C>T
  hgvsp: ENSP00000381707.4:p.Arg1917Cys
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000387621
  ensembl transcript: ENST00000441551
  gene symbol: LOXHD1
  hgvsc: ENST00000441551.2:c.5965C>T
  hgvsp: ENSP00000387621.2:p.Arg1989Cys
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381692
  ensembl transcript: ENST00000398705
  gene symbol: LOXHD1
  hgvsc: ENST00000398705.2:c.1300C>T
  hgvsp: ENSP00000381692.2:p.Arg434Cys
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000461964
  ensembl transcript: ENST00000582408
  gene symbol: LOXHD1
  hgvsc: ENST00000582408.1:c.3064C>T
  hgvsp: ENSP00000461964.1:p.Arg1022Cys
  variant of: http://identifiers.org/hgnc/26521
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1572
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5646
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3701
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1105
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1148
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Arg1084Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Other
population: Latino
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

18-44057694-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44057694
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 44057694
    reference: chr 18
allele count: 1
allele frequency: 4.568296025582458e-5
allele num: 21890
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381676
  ensembl transcript: ENST00000398686
  gene symbol: LOXHD1
  hgvsc: ENST00000398686.4:c.1280G>A
  hgvsp: ENSP00000381676.4:p.Arg427Gln
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000300591
  ensembl transcript: ENST00000300591
  gene symbol: LOXHD1
  hgvsc: ENST00000300591.6:c.3230G>A
  hgvsp: ENSP00000300591.6:p.Arg1077Gln
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381707
  ensembl transcript: ENST00000398722
  gene symbol: LOXHD1
  hgvsc: ENST00000398722.4:c.5729G>A
  hgvsp: ENSP00000381707.4:p.Arg1910Gln
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381692
  ensembl transcript: ENST00000398705
  gene symbol: LOXHD1
  hgvsc: ENST00000398705.2:c.1280G>A
  hgvsp: ENSP00000381692.2:p.Arg427Gln
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000461964
  ensembl transcript: ENST00000582408
  gene symbol: LOXHD1
  hgvsc: ENST00000582408.1:c.3044G>A
  hgvsp: ENSP00000461964.1:p.Arg1015Gln
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000409062
  ensembl transcript: ENST00000441893
  gene symbol: LOXHD1
  hgvsc: ENST00000441893.2:c.3176G>A
  hgvsp: ENSP00000409062.2:p.Arg1059Gln
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000387621
  ensembl transcript: ENST00000441551
  gene symbol: LOXHD1
  hgvsc: ENST00000441551.2:c.5945G>A
  hgvsp: ENSP00000387621.2:p.Arg1982Gln
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000463285
  ensembl transcript: ENST00000579038
  gene symbol: LOXHD1
  hgvsc: ENST00000579038.1:c.2942G>A
  hgvsp: ENSP00000463285.1:p.Arg981Gln
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000444586
  ensembl transcript: ENST00000536736
  gene symbol: LOXHD1
  hgvsc: ENST00000536736.1:c.6377G>A
  hgvsp: ENSP00000444586.1:p.Arg2126Gln
  variant of: http://identifiers.org/hgnc/26521
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1623
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5643
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3719
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg1077Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: Other
reference allele: C
site quality: FS
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

18-44057695-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44057695
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 44057695
    reference: chr 18
allele count: 2
allele frequency: 9.137426900584795e-5
allele num: 21888
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000387621
  ensembl transcript: ENST00000441551
  gene symbol: LOXHD1
  hgvsc: ENST00000441551.2:c.5944C>T
  hgvsp: ENSP00000387621.2:p.Arg1982Trp
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381692
  ensembl transcript: ENST00000398705
  gene symbol: LOXHD1
  hgvsc: ENST00000398705.2:c.1279C>T
  hgvsp: ENSP00000381692.2:p.Arg427Trp
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000409062
  ensembl transcript: ENST00000441893
  gene symbol: LOXHD1
  hgvsc: ENST00000441893.2:c.3175C>T
  hgvsp: ENSP00000409062.2:p.Arg1059Trp
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381676
  ensembl transcript: ENST00000398686
  gene symbol: LOXHD1
  hgvsc: ENST00000398686.4:c.1279C>T
  hgvsp: ENSP00000381676.4:p.Arg427Trp
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381707
  ensembl transcript: ENST00000398722
  gene symbol: LOXHD1
  hgvsc: ENST00000398722.4:c.5728C>T
  hgvsp: ENSP00000381707.4:p.Arg1910Trp
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000444586
  ensembl transcript: ENST00000536736
  gene symbol: LOXHD1
  hgvsc: ENST00000536736.1:c.6376C>T
  hgvsp: ENSP00000444586.1:p.Arg2126Trp
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000461964
  ensembl transcript: ENST00000582408
  gene symbol: LOXHD1
  hgvsc: ENST00000582408.1:c.3043C>T
  hgvsp: ENSP00000461964.1:p.Arg1015Trp
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000463285
  ensembl transcript: ENST00000579038
  gene symbol: LOXHD1
  hgvsc: ENST00000579038.1:c.2941C>T
  hgvsp: ENSP00000463285.1:p.Arg981Trp
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000300591
  ensembl transcript: ENST00000300591
  gene symbol: LOXHD1
  hgvsc: ENST00000300591.6:c.3229C>T
  hgvsp: ENSP00000300591.6:p.Arg1077Trp
  variant of: http://identifiers.org/hgnc/26521
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5635
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1625
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3721
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg1077Trp
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ

18-44057718-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44057718
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 44057718
    reference: chr 18
allele count: 1
allele frequency: 4.572473708276177e-5
allele num: 21870
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381676
  ensembl transcript: ENST00000398686
  gene symbol: LOXHD1
  hgvsc: ENST00000398686.4:c.1256G>A
  hgvsp: ENSP00000381676.4:p.Gly419Glu
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381692
  ensembl transcript: ENST00000398705
  gene symbol: LOXHD1
  hgvsc: ENST00000398705.2:c.1256G>A
  hgvsp: ENSP00000381692.2:p.Gly419Glu
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000461964
  ensembl transcript: ENST00000582408
  gene symbol: LOXHD1
  hgvsc: ENST00000582408.1:c.3020G>A
  hgvsp: ENSP00000461964.1:p.Gly1007Glu
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000409062
  ensembl transcript: ENST00000441893
  gene symbol: LOXHD1
  hgvsc: ENST00000441893.2:c.3152G>A
  hgvsp: ENSP00000409062.2:p.Gly1051Glu
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000300591
  ensembl transcript: ENST00000300591
  gene symbol: LOXHD1
  hgvsc: ENST00000300591.6:c.3206G>A
  hgvsp: ENSP00000300591.6:p.Gly1069Glu
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381707
  ensembl transcript: ENST00000398722
  gene symbol: LOXHD1
  hgvsc: ENST00000398722.4:c.5705G>A
  hgvsp: ENSP00000381707.4:p.Gly1902Glu
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000387621
  ensembl transcript: ENST00000441551
  gene symbol: LOXHD1
  hgvsc: ENST00000441551.2:c.5921G>A
  hgvsp: ENSP00000387621.2:p.Gly1974Glu
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000463285
  ensembl transcript: ENST00000579038
  gene symbol: LOXHD1
  hgvsc: ENST00000579038.1:c.2918G>A
  hgvsp: ENSP00000463285.1:p.Gly973Glu
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000444586
  ensembl transcript: ENST00000536736
  gene symbol: LOXHD1
  hgvsc: ENST00000536736.1:c.6353G>A
  hgvsp: ENSP00000444586.1:p.Gly2118Glu
  variant of: http://identifiers.org/hgnc/26521
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1726
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5624
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3731
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1105
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1155
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 499
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gly1069Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

18-44057731-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44057731
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 44057731
    reference: chr 18
allele count: 2
allele frequency: 9.1726288754357e-5
allele num: 21804
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000300591
  ensembl transcript: ENST00000300591
  gene symbol: LOXHD1
  hgvsc: ENST00000300591.6:c.3193G>A
  hgvsp: ENSP00000300591.6:p.Val1065Met
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000409062
  ensembl transcript: ENST00000441893
  gene symbol: LOXHD1
  hgvsc: ENST00000441893.2:c.3139G>A
  hgvsp: ENSP00000409062.2:p.Val1047Met
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000387621
  ensembl transcript: ENST00000441551
  gene symbol: LOXHD1
  hgvsc: ENST00000441551.2:c.5908G>A
  hgvsp: ENSP00000387621.2:p.Val1970Met
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381707
  ensembl transcript: ENST00000398722
  gene symbol: LOXHD1
  hgvsc: ENST00000398722.4:c.5692G>A
  hgvsp: ENSP00000381707.4:p.Val1898Met
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000461964
  ensembl transcript: ENST00000582408
  gene symbol: LOXHD1
  hgvsc: ENST00000582408.1:c.3007G>A
  hgvsp: ENSP00000461964.1:p.Val1003Met
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381692
  ensembl transcript: ENST00000398705
  gene symbol: LOXHD1
  hgvsc: ENST00000398705.2:c.1243G>A
  hgvsp: ENSP00000381692.2:p.Val415Met
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000444586
  ensembl transcript: ENST00000536736
  gene symbol: LOXHD1
  hgvsc: ENST00000536736.1:c.6340G>A
  hgvsp: ENSP00000444586.1:p.Val2114Met
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381676
  ensembl transcript: ENST00000398686
  gene symbol: LOXHD1
  hgvsc: ENST00000398686.4:c.1243G>A
  hgvsp: ENSP00000381676.4:p.Val415Met
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000463285
  ensembl transcript: ENST00000579038
  gene symbol: LOXHD1
  hgvsc: ENST00000579038.1:c.2905G>A
  hgvsp: ENSP00000463285.1:p.Val969Met
  variant of: http://identifiers.org/hgnc/26521
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5619
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3736
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1774
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Val1065Met
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: QD

18-44057733-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44057733
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 44057733
    reference: chr 18
allele count: 4
allele frequency: 1.834357516279923e-4
allele num: 21806
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381692
  ensembl transcript: ENST00000398705
  gene symbol: LOXHD1
  hgvsc: ENST00000398705.2:c.1241T>C
  hgvsp: ENSP00000381692.2:p.Phe414Ser
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381707
  ensembl transcript: ENST00000398722
  gene symbol: LOXHD1
  hgvsc: ENST00000398722.4:c.5690T>C
  hgvsp: ENSP00000381707.4:p.Phe1897Ser
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000409062
  ensembl transcript: ENST00000441893
  gene symbol: LOXHD1
  hgvsc: ENST00000441893.2:c.3137T>C
  hgvsp: ENSP00000409062.2:p.Phe1046Ser
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000387621
  ensembl transcript: ENST00000441551
  gene symbol: LOXHD1
  hgvsc: ENST00000441551.2:c.5906T>C
  hgvsp: ENSP00000387621.2:p.Phe1969Ser
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000463285
  ensembl transcript: ENST00000579038
  gene symbol: LOXHD1
  hgvsc: ENST00000579038.1:c.2903T>C
  hgvsp: ENSP00000463285.1:p.Phe968Ser
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381676
  ensembl transcript: ENST00000398686
  gene symbol: LOXHD1
  hgvsc: ENST00000398686.4:c.1241T>C
  hgvsp: ENSP00000381676.4:p.Phe414Ser
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000300591
  ensembl transcript: ENST00000300591
  gene symbol: LOXHD1
  hgvsc: ENST00000300591.6:c.3191T>C
  hgvsp: ENSP00000300591.6:p.Phe1064Ser
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000444586
  ensembl transcript: ENST00000536736
  gene symbol: LOXHD1
  hgvsc: ENST00000536736.1:c.6338T>C
  hgvsp: ENSP00000444586.1:p.Phe2113Ser
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000461964
  ensembl transcript: ENST00000582408
  gene symbol: LOXHD1
  hgvsc: ENST00000582408.1:c.3005T>C
  hgvsp: ENSP00000461964.1:p.Phe1002Ser
  variant of: http://identifiers.org/hgnc/26521
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1787
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5620
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3733
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 9.75e1
  variant carriers: 4
hgvs: p.Phe1064Ser
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff

18-44057737-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44057737
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 44057737
    reference: chr 18
allele count: 1
allele frequency: 4.587997797761057e-5
allele num: 21796
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000387621
  ensembl transcript: ENST00000441551
  gene symbol: LOXHD1
  hgvsc: ENST00000441551.2:c.5902G>A
  hgvsp: ENSP00000387621.2:p.Val1968Ile
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000461964
  ensembl transcript: ENST00000582408
  gene symbol: LOXHD1
  hgvsc: ENST00000582408.1:c.3001G>A
  hgvsp: ENSP00000461964.1:p.Val1001Ile
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000463285
  ensembl transcript: ENST00000579038
  gene symbol: LOXHD1
  hgvsc: ENST00000579038.1:c.2899G>A
  hgvsp: ENSP00000463285.1:p.Val967Ile
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000300591
  ensembl transcript: ENST00000300591
  gene symbol: LOXHD1
  hgvsc: ENST00000300591.6:c.3187G>A
  hgvsp: ENSP00000300591.6:p.Val1063Ile
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381692
  ensembl transcript: ENST00000398705
  gene symbol: LOXHD1
  hgvsc: ENST00000398705.2:c.1237G>A
  hgvsp: ENSP00000381692.2:p.Val413Ile
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000444586
  ensembl transcript: ENST00000536736
  gene symbol: LOXHD1
  hgvsc: ENST00000536736.1:c.6334G>A
  hgvsp: ENSP00000444586.1:p.Val2112Ile
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000409062
  ensembl transcript: ENST00000441893
  gene symbol: LOXHD1
  hgvsc: ENST00000441893.2:c.3133G>A
  hgvsp: ENSP00000409062.2:p.Val1045Ile
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381676
  ensembl transcript: ENST00000398686
  gene symbol: LOXHD1
  hgvsc: ENST00000398686.4:c.1237G>A
  hgvsp: ENSP00000381676.4:p.Val413Ile
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381707
  ensembl transcript: ENST00000398722
  gene symbol: LOXHD1
  hgvsc: ENST00000398722.4:c.5686G>A
  hgvsp: ENSP00000381707.4:p.Val1896Ile
  variant of: http://identifiers.org/hgnc/26521
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1796
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5620
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3739
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8743
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Val1063Ile
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: QD

18-44057764-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44057764
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 44057764
    reference: chr 18
allele count: 1
allele frequency: 4.593477262287552e-5
allele num: 21770
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000300591
  ensembl transcript: ENST00000300591
  gene symbol: LOXHD1
  hgvsc: ENST00000300591.6:c.3160G>A
  hgvsp: ENSP00000300591.6:p.Glu1054Lys
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000463285
  ensembl transcript: ENST00000579038
  gene symbol: LOXHD1
  hgvsc: ENST00000579038.1:c.2872G>A
  hgvsp: ENSP00000463285.1:p.Glu958Lys
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381692
  ensembl transcript: ENST00000398705
  gene symbol: LOXHD1
  hgvsc: ENST00000398705.2:c.1210G>A
  hgvsp: ENSP00000381692.2:p.Glu404Lys
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000444586
  ensembl transcript: ENST00000536736
  gene symbol: LOXHD1
  hgvsc: ENST00000536736.1:c.6307G>A
  hgvsp: ENSP00000444586.1:p.Glu2103Lys
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000387621
  ensembl transcript: ENST00000441551
  gene symbol: LOXHD1
  hgvsc: ENST00000441551.2:c.5875G>A
  hgvsp: ENSP00000387621.2:p.Glu1959Lys
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000461964
  ensembl transcript: ENST00000582408
  gene symbol: LOXHD1
  hgvsc: ENST00000582408.1:c.2974G>A
  hgvsp: ENSP00000461964.1:p.Glu992Lys
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000409062
  ensembl transcript: ENST00000441893
  gene symbol: LOXHD1
  hgvsc: ENST00000441893.2:c.3106G>A
  hgvsp: ENSP00000409062.2:p.Glu1036Lys
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381676
  ensembl transcript: ENST00000398686
  gene symbol: LOXHD1
  hgvsc: ENST00000398686.4:c.1210G>A
  hgvsp: ENSP00000381676.4:p.Glu404Lys
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381707
  ensembl transcript: ENST00000398722
  gene symbol: LOXHD1
  hgvsc: ENST00000398722.4:c.5659G>A
  hgvsp: ENSP00000381707.4:p.Glu1887Lys
  variant of: http://identifiers.org/hgnc/26521
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1810
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3739
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5623
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1151
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Glu1054Lys
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQ

18-44057774-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44057774
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 44057774
    reference: chr 18
allele count: 1
allele frequency: 4.595165885488466e-5
allele num: 21762
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000409062
  ensembl transcript: ENST00000441893
  gene symbol: LOXHD1
  hgvsc: ENST00000441893.2:c.3096A>G
  hgvsp: ENST00000441893.2:c.3096A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000300591
  ensembl transcript: ENST00000300591
  gene symbol: LOXHD1
  hgvsc: ENST00000300591.6:c.3150A>G
  hgvsp: ENST00000300591.6:c.3150A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000387621
  ensembl transcript: ENST00000441551
  gene symbol: LOXHD1
  hgvsc: ENST00000441551.2:c.5865A>G
  hgvsp: ENST00000441551.2:c.5865A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381707
  ensembl transcript: ENST00000398722
  gene symbol: LOXHD1
  hgvsc: ENST00000398722.4:c.5649A>G
  hgvsp: ENST00000398722.4:c.5649A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381692
  ensembl transcript: ENST00000398705
  gene symbol: LOXHD1
  hgvsc: ENST00000398705.2:c.1200A>G
  hgvsp: ENST00000398705.2:c.1200A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000463285
  ensembl transcript: ENST00000579038
  gene symbol: LOXHD1
  hgvsc: ENST00000579038.1:c.2862A>G
  hgvsp: ENST00000579038.1:c.2862A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381676
  ensembl transcript: ENST00000398686
  gene symbol: LOXHD1
  hgvsc: ENST00000398686.4:c.1200A>G
  hgvsp: ENST00000398686.4:c.1200A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000461964
  ensembl transcript: ENST00000582408
  gene symbol: LOXHD1
  hgvsc: ENST00000582408.1:c.2964A>G
  hgvsp: ENST00000582408.1:c.2964A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000444586
  ensembl transcript: ENST00000536736
  gene symbol: LOXHD1
  hgvsc: ENST00000536736.1:c.6297A>G
  hgvsp: ENST00000536736.1:c.6297A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1817
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3740
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5624
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Thr1050Thr
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum

18-44057795-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44057795
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 44057795
    reference: chr 18
allele count: 4
allele frequency: 1.838742300266618e-4
allele num: 21754
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000387621
  ensembl transcript: ENST00000441551
  gene symbol: LOXHD1
  hgvsc: ENST00000441551.2:c.5844C>G
  hgvsp: ENST00000441551.2:c.5844C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381676
  ensembl transcript: ENST00000398686
  gene symbol: LOXHD1
  hgvsc: ENST00000398686.4:c.1179C>G
  hgvsp: ENST00000398686.4:c.1179C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000409062
  ensembl transcript: ENST00000441893
  gene symbol: LOXHD1
  hgvsc: ENST00000441893.2:c.3075C>G
  hgvsp: ENST00000441893.2:c.3075C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000463285
  ensembl transcript: ENST00000579038
  gene symbol: LOXHD1
  hgvsc: ENST00000579038.1:c.2841C>G
  hgvsp: ENST00000579038.1:c.2841C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381707
  ensembl transcript: ENST00000398722
  gene symbol: LOXHD1
  hgvsc: ENST00000398722.4:c.5628C>G
  hgvsp: ENST00000398722.4:c.5628C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381692
  ensembl transcript: ENST00000398705
  gene symbol: LOXHD1
  hgvsc: ENST00000398705.2:c.1179C>G
  hgvsp: ENST00000398705.2:c.1179C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000461964
  ensembl transcript: ENST00000582408
  gene symbol: LOXHD1
  hgvsc: ENST00000582408.1:c.2943C>G
  hgvsp: ENST00000582408.1:c.2943C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000300591
  ensembl transcript: ENST00000300591
  gene symbol: LOXHD1
  hgvsc: ENST00000300591.6:c.3129C>G
  hgvsp: ENST00000300591.6:c.3129C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000444586
  ensembl transcript: ENST00000536736
  gene symbol: LOXHD1
  hgvsc: ENST00000536736.1:c.6276C>G
  hgvsp: ENST00000536736.1:c.6276C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5622
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3741
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8745
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Val1043Val
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum

18-44057797-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44057797
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 44057797
    reference: chr 18
allele count: 3
allele frequency: 1.379310344827586e-4
allele num: 21750
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000461964
  ensembl transcript: ENST00000582408
  gene symbol: LOXHD1
  hgvsc: ENST00000582408.1:c.2941G>A
  hgvsp: ENSP00000461964.1:p.Val981Ile
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381707
  ensembl transcript: ENST00000398722
  gene symbol: LOXHD1
  hgvsc: ENST00000398722.4:c.5626G>A
  hgvsp: ENSP00000381707.4:p.Val1876Ile
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000387621
  ensembl transcript: ENST00000441551
  gene symbol: LOXHD1
  hgvsc: ENST00000441551.2:c.5842G>A
  hgvsp: ENSP00000387621.2:p.Val1948Ile
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000463285
  ensembl transcript: ENST00000579038
  gene symbol: LOXHD1
  hgvsc: ENST00000579038.1:c.2839G>A
  hgvsp: ENSP00000463285.1:p.Val947Ile
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000409062
  ensembl transcript: ENST00000441893
  gene symbol: LOXHD1
  hgvsc: ENST00000441893.2:c.3073G>A
  hgvsp: ENSP00000409062.2:p.Val1025Ile
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000444586
  ensembl transcript: ENST00000536736
  gene symbol: LOXHD1
  hgvsc: ENST00000536736.1:c.6274G>A
  hgvsp: ENSP00000444586.1:p.Val2092Ile
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381676
  ensembl transcript: ENST00000398686
  gene symbol: LOXHD1
  hgvsc: ENST00000398686.4:c.1177G>A
  hgvsp: ENSP00000381676.4:p.Val393Ile
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000300591
  ensembl transcript: ENST00000300591
  gene symbol: LOXHD1
  hgvsc: ENST00000300591.6:c.3127G>A
  hgvsp: ENSP00000300591.6:p.Val1043Ile
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381692
  ensembl transcript: ENST00000398705
  gene symbol: LOXHD1
  hgvsc: ENST00000398705.2:c.1177G>A
  hgvsp: ENSP00000381692.2:p.Val393Ile
  variant of: http://identifiers.org/hgnc/26521
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1778
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3744
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5619
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Val1043Ile
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

18-44057838-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44057838
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 44057838
    reference: chr 18
allele count: 2
allele frequency: 9.198785760279643e-5
allele num: 21742
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000409062
  ensembl transcript: ENST00000441893
  gene symbol: LOXHD1
  hgvsc: ENST00000441893.2:c.3032C>T
  hgvsp: ENSP00000409062.2:p.Thr1011Met
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000387621
  ensembl transcript: ENST00000441551
  gene symbol: LOXHD1
  hgvsc: ENST00000441551.2:c.5801C>T
  hgvsp: ENSP00000387621.2:p.Thr1934Met
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000461964
  ensembl transcript: ENST00000582408
  gene symbol: LOXHD1
  hgvsc: ENST00000582408.1:c.2900C>T
  hgvsp: ENSP00000461964.1:p.Thr967Met
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000463285
  ensembl transcript: ENST00000579038
  gene symbol: LOXHD1
  hgvsc: ENST00000579038.1:c.2798C>T
  hgvsp: ENSP00000463285.1:p.Thr933Met
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000444586
  ensembl transcript: ENST00000536736
  gene symbol: LOXHD1
  hgvsc: ENST00000536736.1:c.6233C>T
  hgvsp: ENSP00000444586.1:p.Thr2078Met
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381692
  ensembl transcript: ENST00000398705
  gene symbol: LOXHD1
  hgvsc: ENST00000398705.2:c.1136C>T
  hgvsp: ENSP00000381692.2:p.Thr379Met
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000300591
  ensembl transcript: ENST00000300591
  gene symbol: LOXHD1
  hgvsc: ENST00000300591.6:c.3086C>T
  hgvsp: ENSP00000300591.6:p.Thr1029Met
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381676
  ensembl transcript: ENST00000398686
  gene symbol: LOXHD1
  hgvsc: ENST00000398686.4:c.1136C>T
  hgvsp: ENSP00000381676.4:p.Thr379Met
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381707
  ensembl transcript: ENST00000398722
  gene symbol: LOXHD1
  hgvsc: ENST00000398722.4:c.5585C>T
  hgvsp: ENSP00000381707.4:p.Thr1862Met
  variant of: http://identifiers.org/hgnc/26521
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5612
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3741
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1691
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1150
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Thr1029Met
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: African
population: European (Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: QD

18-44057840-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44057840
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 44057840
    reference: chr 18
allele count: 1
allele frequency: 4.600239212439047e-5
allele num: 21738
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000409062
  ensembl transcript: ENST00000441893
  gene symbol: LOXHD1
  hgvsc: ENST00000441893.2:c.3030G>A
  hgvsp: ENST00000441893.2:c.3030G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381692
  ensembl transcript: ENST00000398705
  gene symbol: LOXHD1
  hgvsc: ENST00000398705.2:c.1134G>A
  hgvsp: ENST00000398705.2:c.1134G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000461964
  ensembl transcript: ENST00000582408
  gene symbol: LOXHD1
  hgvsc: ENST00000582408.1:c.2898G>A
  hgvsp: ENST00000582408.1:c.2898G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000300591
  ensembl transcript: ENST00000300591
  gene symbol: LOXHD1
  hgvsc: ENST00000300591.6:c.3084G>A
  hgvsp: ENST00000300591.6:c.3084G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381707
  ensembl transcript: ENST00000398722
  gene symbol: LOXHD1
  hgvsc: ENST00000398722.4:c.5583G>A
  hgvsp: ENST00000398722.4:c.5583G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000463285
  ensembl transcript: ENST00000579038
  gene symbol: LOXHD1
  hgvsc: ENST00000579038.1:c.2796G>A
  hgvsp: ENST00000579038.1:c.2796G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381676
  ensembl transcript: ENST00000398686
  gene symbol: LOXHD1
  hgvsc: ENST00000398686.4:c.1134G>A
  hgvsp: ENST00000398686.4:c.1134G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000444586
  ensembl transcript: ENST00000536736
  gene symbol: LOXHD1
  hgvsc: ENST00000536736.1:c.6231G>A
  hgvsp: ENST00000536736.1:c.6231G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000387621
  ensembl transcript: ENST00000441551
  gene symbol: LOXHD1
  hgvsc: ENST00000441551.2:c.5799G>A
  hgvsp: ENST00000441551.2:c.5799G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26521
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1682
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3740
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5613
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1542
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Lys1028Lys
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

18-44057849-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44057849
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 44057849
    reference: chr 18
allele count: 1
allele frequency: 4.601509295048776e-5
allele num: 21732
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381707
  ensembl transcript: ENST00000398722
  gene symbol: LOXHD1
  hgvsc: ENST00000398722.4:c.5574G>C
  hgvsp: ENSP00000381707.4:p.Glu1858Asp
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381676
  ensembl transcript: ENST00000398686
  gene symbol: LOXHD1
  hgvsc: ENST00000398686.4:c.1125G>C
  hgvsp: ENSP00000381676.4:p.Glu375Asp
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000463285
  ensembl transcript: ENST00000579038
  gene symbol: LOXHD1
  hgvsc: ENST00000579038.1:c.2787G>C
  hgvsp: ENSP00000463285.1:p.Glu929Asp
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000300591
  ensembl transcript: ENST00000300591
  gene symbol: LOXHD1
  hgvsc: ENST00000300591.6:c.3075G>C
  hgvsp: ENSP00000300591.6:p.Glu1025Asp
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000387621
  ensembl transcript: ENST00000441551
  gene symbol: LOXHD1
  hgvsc: ENST00000441551.2:c.5790G>C
  hgvsp: ENSP00000387621.2:p.Glu1930Asp
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381692
  ensembl transcript: ENST00000398705
  gene symbol: LOXHD1
  hgvsc: ENST00000398705.2:c.1125G>C
  hgvsp: ENSP00000381692.2:p.Glu375Asp
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000444586
  ensembl transcript: ENST00000536736
  gene symbol: LOXHD1
  hgvsc: ENST00000536736.1:c.6222G>C
  hgvsp: ENSP00000444586.1:p.Glu2074Asp
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000461964
  ensembl transcript: ENST00000582408
  gene symbol: LOXHD1
  hgvsc: ENST00000582408.1:c.2889G>C
  hgvsp: ENSP00000461964.1:p.Glu963Asp
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000409062
  ensembl transcript: ENST00000441893
  gene symbol: LOXHD1
  hgvsc: ENST00000441893.2:c.3021G>C
  hgvsp: ENSP00000409062.2:p.Glu1007Asp
  variant of: http://identifiers.org/hgnc/26521
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3739
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1667
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5609
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Glu1025Asp
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

18-44057851-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44057851
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 44057851
    reference: chr 18
allele count: 1
allele frequency: 4.602780079167817e-5
allele num: 21726
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381676
  ensembl transcript: ENST00000398686
  gene symbol: LOXHD1
  hgvsc: ENST00000398686.4:c.1123G>A
  hgvsp: ENSP00000381676.4:p.Glu375Lys
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000444586
  ensembl transcript: ENST00000536736
  gene symbol: LOXHD1
  hgvsc: ENST00000536736.1:c.6220G>A
  hgvsp: ENSP00000444586.1:p.Glu2074Lys
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000387621
  ensembl transcript: ENST00000441551
  gene symbol: LOXHD1
  hgvsc: ENST00000441551.2:c.5788G>A
  hgvsp: ENSP00000387621.2:p.Glu1930Lys
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381707
  ensembl transcript: ENST00000398722
  gene symbol: LOXHD1
  hgvsc: ENST00000398722.4:c.5572G>A
  hgvsp: ENSP00000381707.4:p.Glu1858Lys
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000409062
  ensembl transcript: ENST00000441893
  gene symbol: LOXHD1
  hgvsc: ENST00000441893.2:c.3019G>A
  hgvsp: ENSP00000409062.2:p.Glu1007Lys
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381692
  ensembl transcript: ENST00000398705
  gene symbol: LOXHD1
  hgvsc: ENST00000398705.2:c.1123G>A
  hgvsp: ENSP00000381692.2:p.Glu375Lys
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000461964
  ensembl transcript: ENST00000582408
  gene symbol: LOXHD1
  hgvsc: ENST00000582408.1:c.2887G>A
  hgvsp: ENSP00000461964.1:p.Glu963Lys
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000300591
  ensembl transcript: ENST00000300591
  gene symbol: LOXHD1
  hgvsc: ENST00000300591.6:c.3073G>A
  hgvsp: ENSP00000300591.6:p.Glu1025Lys
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000463285
  ensembl transcript: ENST00000579038
  gene symbol: LOXHD1
  hgvsc: ENST00000579038.1:c.2785G>A
  hgvsp: ENSP00000463285.1:p.Glu929Lys
  variant of: http://identifiers.org/hgnc/26521
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1667
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3739
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5605
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Glu1025Lys
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

18-44057856-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44057856
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 44057856
    reference: chr 18
allele count: 1
allele frequency: 4.604051565377532e-5
allele num: 21720
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000409062
  ensembl transcript: ENST00000441893
  gene symbol: LOXHD1
  hgvsc: ENST00000441893.2:c.3014T>C
  hgvsp: ENSP00000409062.2:p.Val1005Ala
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381707
  ensembl transcript: ENST00000398722
  gene symbol: LOXHD1
  hgvsc: ENST00000398722.4:c.5567T>C
  hgvsp: ENSP00000381707.4:p.Val1856Ala
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000444586
  ensembl transcript: ENST00000536736
  gene symbol: LOXHD1
  hgvsc: ENST00000536736.1:c.6215T>C
  hgvsp: ENSP00000444586.1:p.Val2072Ala
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000461964
  ensembl transcript: ENST00000582408
  gene symbol: LOXHD1
  hgvsc: ENST00000582408.1:c.2882T>C
  hgvsp: ENSP00000461964.1:p.Val961Ala
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381692
  ensembl transcript: ENST00000398705
  gene symbol: LOXHD1
  hgvsc: ENST00000398705.2:c.1118T>C
  hgvsp: ENSP00000381692.2:p.Val373Ala
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000463285
  ensembl transcript: ENST00000579038
  gene symbol: LOXHD1
  hgvsc: ENST00000579038.1:c.2780T>C
  hgvsp: ENSP00000463285.1:p.Val927Ala
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000387621
  ensembl transcript: ENST00000441551
  gene symbol: LOXHD1
  hgvsc: ENST00000441551.2:c.5783T>C
  hgvsp: ENSP00000387621.2:p.Val1928Ala
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381676
  ensembl transcript: ENST00000398686
  gene symbol: LOXHD1
  hgvsc: ENST00000398686.4:c.1118T>C
  hgvsp: ENSP00000381676.4:p.Val373Ala
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000300591
  ensembl transcript: ENST00000300591
  gene symbol: LOXHD1
  hgvsc: ENST00000300591.6:c.3068T>C
  hgvsp: ENSP00000300591.6:p.Val1023Ala
  variant of: http://identifiers.org/hgnc/26521
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3737
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5597
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1146
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Val1023Ala
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

18-44057894-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44057894
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 44057894
    reference: chr 18
allele count: 2
allele frequency: 9.400263207369807e-5
allele num: 21276
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381692
  ensembl transcript: ENST00000398705
  gene symbol: LOXHD1
  hgvsc: ENST00000398705.2:c.1080C>A
  hgvsp: ENSP00000381692.2:p.Cys360Ter
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000463285
  ensembl transcript: ENST00000579038
  gene symbol: LOXHD1
  hgvsc: ENST00000579038.1:c.2742C>A
  hgvsp: ENSP00000463285.1:p.Cys914Ter
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000409062
  ensembl transcript: ENST00000441893
  gene symbol: LOXHD1
  hgvsc: ENST00000441893.2:c.2976C>A
  hgvsp: ENSP00000409062.2:p.Cys992Ter
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000461964
  ensembl transcript: ENST00000582408
  gene symbol: LOXHD1
  hgvsc: ENST00000582408.1:c.2844C>A
  hgvsp: ENSP00000461964.1:p.Cys948Ter
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381707
  ensembl transcript: ENST00000398722
  gene symbol: LOXHD1
  hgvsc: ENST00000398722.4:c.5529C>A
  hgvsp: ENSP00000381707.4:p.Cys1843Ter
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000300591
  ensembl transcript: ENST00000300591
  gene symbol: LOXHD1
  hgvsc: ENST00000300591.6:c.3030C>A
  hgvsp: ENSP00000300591.6:p.Cys1010Ter
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000387621
  ensembl transcript: ENST00000441551
  gene symbol: LOXHD1
  hgvsc: ENST00000441551.2:c.5745C>A
  hgvsp: ENSP00000387621.2:p.Cys1915Ter
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381676
  ensembl transcript: ENST00000398686
  gene symbol: LOXHD1
  hgvsc: ENST00000398686.4:c.1080C>A
  hgvsp: ENSP00000381676.4:p.Cys360Ter
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000444586
  ensembl transcript: ENST00000536736
  gene symbol: LOXHD1
  hgvsc: ENST00000536736.1:c.6177C>A
  hgvsp: ENSP00000444586.1:p.Cys2059Ter
  variant of: http://identifiers.org/hgnc/26521
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1742
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5219
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3550
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Cys1010Ter
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: VQSLOD

18-44057943-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44057943
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 44057943
    reference: chr 18
allele count: 3
allele frequency: 1.847290640394089e-4
allele num: 16240
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381707
  ensembl transcript: ENST00000398722
  gene symbol: LOXHD1
  hgvsc: ENST00000398722.4:c.5508-28C>G
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000387621
  ensembl transcript: ENST00000441551
  gene symbol: LOXHD1
  hgvsc: ENST00000441551.2:c.5724-28C>G
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000409062
  ensembl transcript: ENST00000441893
  gene symbol: LOXHD1
  hgvsc: ENST00000441893.2:c.2955-28C>G
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000300591
  ensembl transcript: ENST00000300591
  gene symbol: LOXHD1
  hgvsc: ENST00000300591.6:c.3009-28C>G
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381676
  ensembl transcript: ENST00000398686
  gene symbol: LOXHD1
  hgvsc: ENST00000398686.4:c.1059-28C>G
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000444586
  ensembl transcript: ENST00000536736
  gene symbol: LOXHD1
  hgvsc: ENST00000536736.1:c.6156-28C>G
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381692
  ensembl transcript: ENST00000398705
  gene symbol: LOXHD1
  hgvsc: ENST00000398705.2:c.1059-28C>G
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000463285
  ensembl transcript: ENST00000579038
  gene symbol: LOXHD1
  hgvsc: ENST00000579038.1:c.2721-28C>G
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000461964
  ensembl transcript: ENST00000582408
  gene symbol: LOXHD1
  hgvsc: ENST00000582408.1:c.2823-28C>G
  variant of: http://identifiers.org/hgnc/26521
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2354
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3799
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2323
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1491
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 472
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2079
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD

18-44063502-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44063502
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 44063502
    reference: chr 18
allele count: 1
allele frequency: 4.651162790697674e-5
allele num: 21500
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381707
  ensembl transcript: ENST00000398722
  gene symbol: LOXHD1
  hgvsc: ENST00000398722.4:c.5507+48G>A
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000461964
  ensembl transcript: ENST00000582408
  gene symbol: LOXHD1
  hgvsc: ENST00000582408.1:c.2822+48G>A
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000409062
  ensembl transcript: ENST00000441893
  gene symbol: LOXHD1
  hgvsc: ENST00000441893.2:c.2954+48G>A
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381676
  ensembl transcript: ENST00000398686
  gene symbol: LOXHD1
  hgvsc: ENST00000398686.4:c.1058+48G>A
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000387621
  ensembl transcript: ENST00000441551
  gene symbol: LOXHD1
  hgvsc: ENST00000441551.2:c.5723+48G>A
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000300591
  ensembl transcript: ENST00000300591
  gene symbol: LOXHD1
  hgvsc: ENST00000300591.6:c.3008+48G>A
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000463285
  ensembl transcript: ENST00000579038
  gene symbol: LOXHD1
  hgvsc: ENST00000579038.1:c.2720+48G>A
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000444586
  ensembl transcript: ENST00000536736
  gene symbol: LOXHD1
  hgvsc: ENST00000536736.1:c.6155+48G>A
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381692
  ensembl transcript: ENST00000398705
  gene symbol: LOXHD1
  hgvsc: ENST00000398705.2:c.1058+48G>A
  variant of: http://identifiers.org/hgnc/26521
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1312
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1344
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3112
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 784
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2375
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

18-44063505-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44063505
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 44063505
    reference: chr 18
allele count: 1
allele frequency: 4.649000464900047e-5
allele num: 21510
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000387621
  ensembl transcript: ENST00000441551
  gene symbol: LOXHD1
  hgvsc: ENST00000441551.2:c.5723+45T>A
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000463285
  ensembl transcript: ENST00000579038
  gene symbol: LOXHD1
  hgvsc: ENST00000579038.1:c.2720+45T>A
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000444586
  ensembl transcript: ENST00000536736
  gene symbol: LOXHD1
  hgvsc: ENST00000536736.1:c.6155+45T>A
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381692
  ensembl transcript: ENST00000398705
  gene symbol: LOXHD1
  hgvsc: ENST00000398705.2:c.1058+45T>A
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000300591
  ensembl transcript: ENST00000300591
  gene symbol: LOXHD1
  hgvsc: ENST00000300591.6:c.3008+45T>A
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381676
  ensembl transcript: ENST00000398686
  gene symbol: LOXHD1
  hgvsc: ENST00000398686.4:c.1058+45T>A
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000409062
  ensembl transcript: ENST00000441893
  gene symbol: LOXHD1
  hgvsc: ENST00000441893.2:c.2954+45T>A
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000461964
  ensembl transcript: ENST00000582408
  gene symbol: LOXHD1
  hgvsc: ENST00000582408.1:c.2822+45T>A
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381707
  ensembl transcript: ENST00000398722
  gene symbol: LOXHD1
  hgvsc: ENST00000398722.4:c.5507+45T>A
  variant of: http://identifiers.org/hgnc/26521
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2992
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2869
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

18-44063516-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44063516
    reference: chr 18
  end: Position
    type: ExactPosition
    position: 44063516
    reference: chr 18
allele count: 1
allele frequency: 4.640371229698376e-5
allele num: 21550
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000444586
  ensembl transcript: ENST00000536736
  gene symbol: LOXHD1
  hgvsc: ENST00000536736.1:c.6155+34C>T
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381692
  ensembl transcript: ENST00000398705
  gene symbol: LOXHD1
  hgvsc: ENST00000398705.2:c.1058+34C>T
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000387621
  ensembl transcript: ENST00000441551
  gene symbol: LOXHD1
  hgvsc: ENST00000441551.2:c.5723+34C>T
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000463285
  ensembl transcript: ENST00000579038
  gene symbol: LOXHD1
  hgvsc: ENST00000579038.1:c.2720+34C>T
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381676
  ensembl transcript: ENST00000398686
  gene symbol: LOXHD1
  hgvsc: ENST00000398686.4:c.1058+34C>T
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000409062
  ensembl transcript: ENST00000441893
  gene symbol: LOXHD1
  hgvsc: ENST00000441893.2:c.2954+34C>T
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000461964
  ensembl transcript: ENST00000582408
  gene symbol: LOXHD1
  hgvsc: ENST00000582408.1:c.2822+34C>T
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000300591
  ensembl transcript: ENST00000300591
  gene symbol: LOXHD1
  hgvsc: ENST00000300591.6:c.3008+34C>T
  variant of: http://identifiers.org/hgnc/26521
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000167210
  ensembl protein: ENSP00000381707
  ensembl transcript: ENST00000398722
  gene symbol: LOXHD1
  hgvsc: ENST00000398722.4:c.5507+34C>T
  variant of: http://identifiers.org/hgnc/26521
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1010
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1468
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2714
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1314
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2222
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 495
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 858
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 134
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.822821728034998e-4
allele num: 16458
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66662
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.42e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.04e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.201e0

DP
type: SiteQuality
SIO_000300: 3.727321e6

MQ
type: SiteQuality
SIO_000300: 5.961e1

QD
type: SiteQuality
SIO_000300: 1.45e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.76e-1

FS
type: SiteQuality
SIO_000300: 5.096e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -4.055e0

GenotypeQuality
all individuals: 102
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16446
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500195025353296e-5
allele num: 66658
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.24e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.71e0

DP
type: SiteQuality
SIO_000300: 3.726872e6

VQSLOD
type: SiteQuality
SIO_000300: 4.42e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.86e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.15e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.16e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.315e1

GenotypeQuality
all individuals: 1198
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16420
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500600240096038e-5
allele num: 66640
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.139999999999999e-1

QD
type: SiteQuality
SIO_000300: 8.470000000000001e0

MQ
type: SiteQuality
SIO_000300: 5.866e1

VQSLOD
type: SiteQuality
SIO_000300: -1.242e0

MQRankSum
type: SiteQuality
SIO_000300: 8.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.09e0

DP
type: SiteQuality
SIO_000300: 3.722655e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.350000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.5e-2

GenotypeQuality
all individuals: 48546
bin: 9.75e1
variant carriers: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.728011059270779e-4
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66586
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16268
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.67e-1

FS
type: SiteQuality
SIO_000300: 3.64e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.38e-1

MQ
type: SiteQuality
SIO_000300: 5.939e1

DP
type: SiteQuality
SIO_000300: 3.708413e6

MQRankSum
type: SiteQuality
SIO_000300: 5.38e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.31e-1

QD
type: SiteQuality
SIO_000300: 1.075e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.35e-1

GenotypeQuality
all individuals: 1117
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66596
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.641548565502938e-5
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16312
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 4.652e0

MQRankSum
type: SiteQuality
SIO_000300: 4.5e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.589e0

QD
type: SiteQuality
SIO_000300: 9.720000000000001e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.74e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

DP
type: SiteQuality
SIO_000300: 3.707622e6

GenotypeQuality
all individuals: 264
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66568
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.173601679219657e-5
allele num: 16198
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.5e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.23e-1

FS
type: SiteQuality
SIO_000300: 4.771e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.77e0

DP
type: SiteQuality
SIO_000300: 3.70606e6

QD
type: SiteQuality
SIO_000300: 6.94e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -6.485e-1

GenotypeQuality
all individuals: 754
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 352
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1863
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1624
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2146
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 8.845084660096032e-4
allele num: 7914
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 618
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8756
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 410
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 242
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.5e-1

QD
type: SiteQuality
SIO_000300: 1.351e1

DP
type: SiteQuality
SIO_000300: 4.99664e5

FS
type: SiteQuality
SIO_000300: 1.988e0

VQSLOD
type: SiteQuality
SIO_000300: 1.09e0

MQ
type: SiteQuality
SIO_000300: 5.97e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.09e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -5.142e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.04e-1

GenotypeQuality
all individuals: 352
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1911
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1628
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 242
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 410
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 618
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.263583522870862e-4
allele num: 7914
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2146
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8756
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.92e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.83e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.22e0

MQ
type: SiteQuality
SIO_000300: 5.883e1

QD
type: SiteQuality
SIO_000300: 1.585e1

DP
type: SiteQuality
SIO_000300: 4.99889e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.04e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.6e-1

FS
type: SiteQuality
SIO_000300: 4.533e0

VQSLOD
type: SiteQuality
SIO_000300: -1.05e0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 585
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 410
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 618
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2146
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1628
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8756
num of homozygotes: 0

South Asian
type: Population
allele count: 50
allele frequency: 6.317917614354309e-3
allele num: 7914
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 242
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.02e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.1e-2

DP
type: SiteQuality
SIO_000300: 5.01047e5

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.67e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.14e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.97e0

MQ
type: SiteQuality
SIO_000300: 5.954e1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.89e-1

QD
type: SiteQuality
SIO_000300: 1.422e1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

South Asian
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allele count: 3
allele frequency: 3.790750568612585e-4
allele num: 7914
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1624
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 4.659832246039142e-4
allele num: 2146
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 34
allele frequency: 3.884826325411335e-3
allele num: 8752
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 4.132231404958678e-3
allele num: 242
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 612
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.439024390243902e-3
allele num: 410
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.01182e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.299999999999999e-3

MQRankSum
type: SiteQuality
SIO_000300: -2.27e-1

FS
type: SiteQuality
SIO_000300: 5.23e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.46e-1

MQ
type: SiteQuality
SIO_000300: 5.944e1

VQSLOD
type: SiteQuality
SIO_000300: 1.94e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e-1

QD
type: SiteQuality
SIO_000300: 1.085e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 2144
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 410
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8746
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.644736842105263e-3
allele num: 608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7912
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 242
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1622
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.98825e5

VQSLOD
type: SiteQuality
SIO_000300: -1.604e0

MQRankSum
type: SiteQuality
SIO_000300: 2.55e-1

FS
type: SiteQuality
SIO_000300: 2.037e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.68e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.16e-2

ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -3.91e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.508e1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 8714
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2138
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.672240802675585e-3
allele num: 598
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7904
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 242
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 402
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1622
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.992e1

FS
type: SiteQuality
SIO_000300: 5.71e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.195e0

MQRankSum
type: SiteQuality
SIO_000300: -8.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.38e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.32e-1

QD
type: SiteQuality
SIO_000300: 1.394e1

VQSLOD
type: SiteQuality
SIO_000300: -2.375e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.14e-2

DP
type: SiteQuality
SIO_000300: 4.97362e5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8700
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 242
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2130
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.265182186234818e-4
allele num: 7904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 596
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1624
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 396
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.938e0

MQ
type: SiteQuality
SIO_000300: 5.906e1

QD
type: SiteQuality
SIO_000300: 7.99e0

FS
type: SiteQuality
SIO_000300: 9.93e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.25e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.04e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.15e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.94e-1

DP
type: SiteQuality
SIO_000300: 4.96209e5

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2130
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 592
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 396
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.15233924867481e-4
allele num: 8678
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1624
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 242
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.070000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.14e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.1e-1

DP
type: SiteQuality
SIO_000300: 4.95199e5

MQ
type: SiteQuality
SIO_000300: 5.941e1

FS
type: SiteQuality
SIO_000300: 4.649e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.79e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.175e0

QD
type: SiteQuality
SIO_000300: 1.05e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.37e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 12
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GenotypeQuality
all individuals: 16
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 396
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.15473441108545e-4
allele num: 8660
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 582
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 242
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2122
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1624
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.762e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.05e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.074e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.44e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.02e-2

FS
type: SiteQuality
SIO_000300: 5.155e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 4.9328e5

BaseQRankSum
type: SiteQuality
SIO_000300: 7.97e0

QD
type: SiteQuality
SIO_000300: 1.743e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 619
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 242
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 390
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2102
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 1.266784899923993e-4
allele num: 7894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1614
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.87078e5

ClippingRankSum
type: SiteQuality
SIO_000300: 8.88e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.5e0

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 8.412000000000001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.22e-2

QD
type: SiteQuality
SIO_000300: 9.609999999999999e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.141e0

MQ
type: SiteQuality
SIO_000300: 5.89e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.193e0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 242
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 384
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2094
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.162250116225012e-4
allele num: 8604
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.01e0

FS
type: SiteQuality
SIO_000300: 9.412000000000001e0

DP
type: SiteQuality
SIO_000300: 4.83908e5

MQRankSum
type: SiteQuality
SIO_000300: 8.69e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.25e-2

QD
type: SiteQuality
SIO_000300: 1.135e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.79e0

VQSLOD
type: SiteQuality
SIO_000300: -2.23e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.89e-1

MQ
type: SiteQuality
SIO_000300: 5.85e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 380
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7888
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8520
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 240
num of homozygotes: 0

African
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allele frequency: 4.859086491739553e-4
allele num: 2058
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 548
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1612
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -9.654e0

FS
type: SiteQuality
SIO_000300: 4.2613e1

QD
type: SiteQuality
SIO_000300: 1.9e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.25e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.415e0

MQRankSum
type: SiteQuality
SIO_000300: -1.56e-1

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.813e1

ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 5556
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African
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East Asian
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allele frequency: 0.0e0
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MQRankSum
type: SiteQuality
SIO_000300: 1.91e0

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.662e1

FS
type: SiteQuality
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 8.95e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.09e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.95e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.206525511975009e-4
allele num: 5762
num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
type: Population
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 144
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 338
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 26
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 0.0e0
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MQRankSum
type: SiteQuality
SIO_000300: -1.45e-1

FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -5.596e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.73e-2

DP
type: SiteQuality
SIO_000300: 1.653e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.2e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.46e-1

QD
type: SiteQuality
SIO_000300: 1.487e1

GenotypeQuality
all individuals: 113
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 785
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.480165778567199e-4
allele num: 6756
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 174
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1552
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7782
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 374
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 552
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.8e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.107e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.23e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.353e-1

DP
type: SiteQuality
SIO_000300: 2.18609e5

ClippingRankSum
type: SiteQuality
SIO_000300: -1.299e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.4e0

QD
type: SiteQuality
SIO_000300: 1.393e1

GenotypeQuality
all individuals: 40
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 9.75e1
variant carriers: 28

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 139
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 176
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7884
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 380
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.439263097294185e-4
allele num: 6948
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36
num of homozygotes: 0

African
type: Population
allele count: 27
allele frequency: 1.691729323308271e-2
allele num: 1596
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 572
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.24e1

FS
type: SiteQuality
SIO_000300: 8.234e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.28e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.44e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.62e0

DP
type: SiteQuality
SIO_000300: 2.24529e5

ClippingRankSum
type: SiteQuality
SIO_000300: -3.91e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.78e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.99e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1925
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GenotypeQuality
all individuals: 69
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 382
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6982
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7898
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 176
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.840000000000001e-1

FS
type: SiteQuality
SIO_000300: 5.69e0

VQSLOD
type: SiteQuality
SIO_000300: 2.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.611e0

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.19e-2

MQ
type: SiteQuality
SIO_000300: 5.965e1

QD
type: SiteQuality
SIO_000300: 1.268e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.67e-1

DP
type: SiteQuality
SIO_000300: 2.24952e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 261
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 176
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1616
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.426940639269406e-4
allele num: 7008
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 380
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.05e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.28e-2

DP
type: SiteQuality
SIO_000300: 2.25502e5

MQRankSum
type: SiteQuality
SIO_000300: -2.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.35e-1

FS
type: SiteQuality
SIO_000300: 2.828e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.61e-1

QD
type: SiteQuality
SIO_000300: 1.656e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.6e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 234
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GenotypeQuality
all individuals: 80
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variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 6.172839506172839e-4
allele num: 1620
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 178
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7026
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 384
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7900
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.38e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-2

QD
type: SiteQuality
SIO_000300: 1.447e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 6.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.12e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.87e-1

DP
type: SiteQuality
SIO_000300: 2.25658e5

MQ
type: SiteQuality
SIO_000300: 5.962e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.24e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 188
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variant carriers: 1

GenotypeQuality
all individuals: 69
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1622
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7040
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 574
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 384
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.265822784810127e-4
allele num: 7900
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 180
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.05e0

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.19e-2

MQRankSum
type: SiteQuality
SIO_000300: 9.7e-2

FS
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -4.628e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.44e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.25952e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 180
num of homozygotes: 0

European (Non-Finnish)
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allele count: 7
allele frequency: 1.065124771758977e-3
allele num: 6572
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 378
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 3.50140056022409e-3
allele num: 1428
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 38
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.266464032421479e-4
allele num: 7896
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.27e0

QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 3.37e-1

MQ
type: SiteQuality
SIO_000300: 5.938e1

FS
type: SiteQuality
SIO_000300: 3.2596e2

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.131e0

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.29e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -4.046e0

DP
type: SiteQuality
SIO_000300: 2.34224e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.265182186234818e-4
allele num: 7904
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 390
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1820
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.35213e5

FS
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 1.15e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.32e-2

ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
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MQRankSum
type: SiteQuality
SIO_000300: -2.66e-1

MQ
type: SiteQuality
SIO_000300: 5.971e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 155
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 5.46448087431694e-4
allele num: 1830
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 586
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7914
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7588
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 390
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.27e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 7.35e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.317e0

MQRankSum
type: SiteQuality
SIO_000300: -3.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.27e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.165e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.35941e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.99e0

GenotypeQuality
all individuals: 73
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2348
bin: 7.5e0
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 392
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 584
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.263583522870862e-4
allele num: 7914
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1856
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7628
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 68
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.0e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.107e0

MQRankSum
type: SiteQuality
SIO_000300: 9.14e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.14e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e0

QD
type: SiteQuality
SIO_000300: 1.558e1

DP
type: SiteQuality
SIO_000300: 2.36881e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.43e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 197
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2343
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 392
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1914
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.263583522870862e-4
allele num: 7914
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 584
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 184
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7708
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 72
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.91e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.36e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.0e-2

QD
type: SiteQuality
SIO_000300: 1.527e1

DP
type: SiteQuality
SIO_000300: 2.39349e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.97e-1

FS
type: SiteQuality
SIO_000300: 7.429e0

MQ
type: SiteQuality
SIO_000300: 5.983e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.235e0

GenotypeQuality
all individuals: 236
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 2.5e0
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GenotypeQuality
all individuals: 66
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 190
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 9.75e1
variant carriers: 49

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6614
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 40
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 1.037344398340249e-3
allele num: 1928
num of homozygotes: 0

South Asian
type: Population
allele count: 8
allele frequency: 1.010866818296689e-3
allele num: 7914
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 184
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 7.692307692307693e-3
allele num: 390
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 582
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 78
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 37
allele frequency: 4.784070338763899e-3
allele num: 7734
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.42315e5

BaseQRankSum
type: SiteQuality
SIO_000300: -2.06e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.39e-2

MQ
type: SiteQuality
SIO_000300: 5.979e1

VQSLOD
type: SiteQuality
SIO_000300: 4.27e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.86e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.92e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.0e-1

QD
type: SiteQuality
SIO_000300: 1.371e1

FS
type: SiteQuality
SIO_000300: 1.378e0

GenotypeQuality
all individuals: 254
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 917
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2331
bin: 7.5e0
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GenotypeQuality
all individuals: 198
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 233
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variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 67
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 152
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variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6677
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 584
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 3.790750568612585e-4
allele num: 7914
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7768
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 88
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1950
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 184
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 392
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.352e1

FS
type: SiteQuality
SIO_000300: 1.903e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.34e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.11e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.89e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.644e0

MQRankSum
type: SiteQuality
SIO_000300: 8.02e-1

MQ
type: SiteQuality
SIO_000300: 5.945e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.416e0

DP
type: SiteQuality
SIO_000300: 2.41623e5

GenotypeQuality
all individuals: 125
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2366
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 941
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6916
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
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variant carriers: 0

GenotypeQuality
all individuals: 1028
bin: 2.25e1
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GenotypeQuality
all individuals: 204
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variant carriers: 10

GenotypeQuality
all individuals: 218
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variant carriers: 0

GenotypeQuality
all individuals: 37
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GenotypeQuality
all individuals: 75
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GenotypeQuality
all individuals: 150
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GenotypeQuality
all individuals: 228
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GenotypeQuality
all individuals: 41
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 102
num of homozygotes: 0

South Asian
type: Population
allele count: 10
allele frequency: 1.263902932254803e-3
allele num: 7912
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 184
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 586
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 390
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7872
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1980
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.45579e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

MQRankSum
type: SiteQuality
SIO_000300: 3.93e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.72e-1

MQ
type: SiteQuality
SIO_000300: 5.979e1

FS
type: SiteQuality
SIO_000300: 2.103e0

VQSLOD
type: SiteQuality
SIO_000300: 8.32e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.92e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.34e-2

QD
type: SiteQuality
SIO_000300: 1.335e1

GenotypeQuality
all individuals: 228
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 2.75e1
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GenotypeQuality
all individuals: 58
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variant carriers: 0

GenotypeQuality
all individuals: 153
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GenotypeQuality
all individuals: 36
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GenotypeQuality
all individuals: 123
bin: 3.25e1
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GenotypeQuality
all individuals: 2368
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GenotypeQuality
all individuals: 266
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 70
bin: 3.75e1
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GenotypeQuality
all individuals: 72
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 4.75e1
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GenotypeQuality
all individuals: 6938
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7914
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 1.503006012024048e-3
allele num: 1996
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 586
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 390
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 110
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.41e-1

FS
type: SiteQuality
SIO_000300: 9.555999999999999e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.36e-2

VQSLOD
type: SiteQuality
SIO_000300: -5.241e-1

DP
type: SiteQuality
SIO_000300: 2.45013e5

MQRankSum
type: SiteQuality
SIO_000300: 7.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.03e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.9e-2

QD
type: SiteQuality
SIO_000300: 1.327e1

GenotypeQuality
all individuals: 123
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 2.5e0
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
all individuals: 25
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GenotypeQuality
all individuals: 71
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GenotypeQuality
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GenotypeQuality
all individuals: 22
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GenotypeQuality
all individuals: 1018
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7057
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 392
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.527167045741723e-4
allele num: 7914
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2024
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.255650426921145e-4
allele num: 7964
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 588
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 152
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.953e1

VQSLOD
type: SiteQuality
SIO_000300: -4.431e-1

FS
type: SiteQuality
SIO_000300: 5.735e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.24e-2

QD
type: SiteQuality
SIO_000300: 1.324e1

DP
type: SiteQuality
SIO_000300: 2.47297e5

MQRankSum
type: SiteQuality
SIO_000300: 1.75e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.81e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.794e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e-1

GenotypeQuality
all individuals: 38
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 3.75e1
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GenotypeQuality
all individuals: 20
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GenotypeQuality
all individuals: 71
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GenotypeQuality
all individuals: 7078
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GenotypeQuality
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GenotypeQuality
all individuals: 177
bin: 2.5e0
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GenotypeQuality
all individuals: 60
bin: 1.75e1
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GenotypeQuality
all individuals: 233
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GenotypeQuality
all individuals: 24
bin: 4.25e1
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GenotypeQuality
all individuals: 69
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GenotypeQuality
all individuals: 269
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GenotypeQuality
all individuals: 153
bin: 8.25e1
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GenotypeQuality
all individuals: 196
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 23
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 588
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2044
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8008
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 3.790750568612585e-4
allele num: 7914
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 174
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 392
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.8e0

DP
type: SiteQuality
SIO_000300: 2.48135e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.98e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.566e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.15e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.2e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.2e-2

QD
type: SiteQuality
SIO_000300: 2.891e1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 400
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7912
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 780
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 218
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2128
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8428
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.48e-1

QD
type: SiteQuality
SIO_000300: 7.68e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.05e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 8.76e-1

DP
type: SiteQuality
SIO_000300: 2.63899e5

FS
type: SiteQuality
SIO_000300: 2.808e0

MQRankSum
type: SiteQuality
SIO_000300: -3.61e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.61e-1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 29
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.175088131609871e-4
allele num: 8510
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7914
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 938
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 220
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 400
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2138
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -5.416e-1

DP
type: SiteQuality
SIO_000300: 2.674e5

FS
type: SiteQuality
SIO_000300: 1.0173e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.76e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.000000000000001e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

QD
type: SiteQuality
SIO_000300: 1.195e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 9
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GenotypeQuality
all individuals: 155
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 228
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 4.664179104477612e-4
allele num: 2144
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1076
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7914
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 606
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.68883e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.327e0

QD
type: SiteQuality
SIO_000300: 1.197e1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.89e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.47e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.77e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.83e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 8.37e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.966e1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1056
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 228
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 400
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2148
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.527167045741723e-4
allele num: 7914
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1160
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.6e-1

FS
type: SiteQuality
SIO_000300: 4.635e0

DP
type: SiteQuality
SIO_000300: 2.70351e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.69e0

QD
type: SiteQuality
SIO_000300: 1.2e1

VQSLOD
type: SiteQuality
SIO_000300: -1.422e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.9e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.78e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 8.61e-1

MQ
type: SiteQuality
SIO_000300: 5.909e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 11
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 236
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 616
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 406
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.263583522870862e-4
allele num: 7914
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.150747986191024e-4
allele num: 8690
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1448
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2174
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e0

DP
type: SiteQuality
SIO_000300: 2.76277e5

BaseQRankSum
type: SiteQuality
SIO_000300: -2.882e0

VQSLOD
type: SiteQuality
SIO_000300: 1.01e0

QD
type: SiteQuality
SIO_000300: 1.333e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.55e-2

MQRankSum
type: SiteQuality
SIO_000300: 6.25e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.7e-2

MQ
type: SiteQuality
SIO_000300: 5.944e1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8696
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2172
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 406
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.263583522870862e-4
allele num: 7914
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1476
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 616
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 236
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.59e0

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 8.129999999999999e-1

BaseQRankSum
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DP
type: SiteQuality
SIO_000300: 2.7652e5

MQ
type: SiteQuality
SIO_000300: 5.99e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.49e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.887e0

FS
type: SiteQuality
SIO_000300: 5.7e-1

QD
type: SiteQuality
SIO_000300: 1.241e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 240
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7914
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.618122977346278e-3
allele num: 618
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1530
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 406
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 8734
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 2172
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.46e-2

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.99e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.77744e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 618
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 408
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 242
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African
type: Population
allele count: 1
allele frequency: 4.595588235294118e-4
allele num: 2176
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8748
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7914
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1566
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.04e-1

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
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SIO_000300: -1.649e0

DP
type: SiteQuality
SIO_000300: 2.78603e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.47e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 8
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GenotypeQuality
all individuals: 23
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GenotypeQuality
all individuals: 157
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GenotypeQuality
all individuals: 268
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
all individuals: 192
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7914
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 618
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8752
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 242
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 4.595588235294118e-4
allele num: 2176
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 408
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.943e1

MQRankSum
type: SiteQuality
SIO_000300: 1.37e0

FS
type: SiteQuality
SIO_000300: 4.709e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.44e-2

DP
type: SiteQuality
SIO_000300: 2.78911e5

QD
type: SiteQuality
SIO_000300: 1.292e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.1e0

VQSLOD
type: SiteQuality
SIO_000300: 2.89e-1

GenotypeQuality
all individuals: 193
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 8538
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 620
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 408
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2172
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8798
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 242
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.263583522870862e-4
allele num: 7914
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.25e-2

MQRankSum
type: SiteQuality
SIO_000300: 8.25e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 9.7e-1

QD
type: SiteQuality
SIO_000300: 1.162e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.673999999999999e0

DP
type: SiteQuality
SIO_000300: 2.79965e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.24e-1

MQ
type: SiteQuality
SIO_000300: 5.972e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.87e-1

GenotypeQuality
all individuals: 70
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 24

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1118
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8812
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2170
num of homozygotes: 0

East Asian
type: Population
allele count: 21
allele frequency: 3.398058252427184e-2
allele num: 618
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.527167045741723e-4
allele num: 7914
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 408
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 4.132231404958678e-3
allele num: 242
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1612
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.73e0

QD
type: SiteQuality
SIO_000300: 1.331e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.59e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.76e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.4e0

DP
type: SiteQuality
SIO_000300: 2.83878e5

MQ
type: SiteQuality
SIO_000300: 5.983e1

MQRankSum
type: SiteQuality
SIO_000300: 5.26e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-2

GenotypeQuality
all individuals: 20
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 72
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 159
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1620
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 410
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 242
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7914
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.131990038487661e-4
allele num: 8834
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 4.604051565377532e-4
allele num: 2172
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.366e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.81336e5

ClippingRankSum
type: SiteQuality
SIO_000300: -1.559e0

FS
type: SiteQuality
SIO_000300: 4.23e0

MQRankSum
type: SiteQuality
SIO_000300: 7.17e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-2

VQSLOD
type: SiteQuality
SIO_000300: 9.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.4e0

GenotypeQuality
all individuals: 539
bin: 2.25e1
variant carriers: 4

GenotypeQuality
all individuals: 52
bin: 1.75e1
variant carriers: 4

GenotypeQuality
all individuals: 177
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1388
bin: 7.5e0
variant carriers: 9

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 5

GenotypeQuality
all individuals: 990
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variant carriers: 3

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 43
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variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.75e1
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GenotypeQuality
all individuals: 1136
bin: 9.75e1
variant carriers: 1009

GenotypeQuality
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variant carriers: 2

GenotypeQuality
all individuals: 13
bin: 3.25e1
variant carriers: 3

GenotypeQuality
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variant carriers: 4

GenotypeQuality
all individuals: 23
bin: 2.75e1
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GenotypeQuality
all individuals: 6
bin: 4.75e1
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GenotypeQuality
all individuals: 114
bin: 8.25e1
variant carriers: 4

GenotypeQuality
all individuals: 198
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variant carriers: 5

GenotypeQuality
all individuals: 60
bin: 9.25e1
variant carriers: 5

GenotypeQuality
all individuals: 8089
bin: 6.25e1
variant carriers: 3

European (Finnish)
type: Population
allele count: 31
allele frequency: 1.899509803921568e-2
allele num: 1632
num of homozygotes: 1

African
type: Population
allele count: 26
allele frequency: 1.193755739210285e-2
allele num: 2178
num of homozygotes: 0

Latino
type: Population
allele count: 29
allele frequency: 7.073170731707316e-2
allele num: 410
num of homozygotes: 1

East Asian
type: Population
allele count: 2
allele frequency: 3.225806451612903e-3
allele num: 620
num of homozygotes: 0

South Asian
type: Population
allele count: 253
allele frequency: 3.19686631286328e-2
allele num: 7914
num of homozygotes: 8

European (Non-Finnish)
type: Population
allele count: 695
allele frequency: 7.7967242539825e-2
allele num: 8914
num of homozygotes: 28

Other
type: Population
allele count: 12
allele frequency: 4.958677685950413e-2
allele num: 242
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.403e1

VQSLOD
type: SiteQuality
SIO_000300: 4.91e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.1e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.036e0

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

FS
type: SiteQuality
SIO_000300: 5.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.01e-1

DP
type: SiteQuality
SIO_000300: 4.32863e5

MQ
type: SiteQuality
SIO_000300: 5.973e1

GenotypeQuality
all individuals: 130
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 7.75e1
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GenotypeQuality
all individuals: 10
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GenotypeQuality
all individuals: 583
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variant carriers: 0

GenotypeQuality
all individuals: 8708
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variant carriers: 0

GenotypeQuality
all individuals: 18
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variant carriers: 0

GenotypeQuality
all individuals: 25
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GenotypeQuality
all individuals: 7
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GenotypeQuality
all individuals: 124
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GenotypeQuality
all individuals: 68
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 164
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variant carriers: 1

GenotypeQuality
all individuals: 61
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8912
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1636
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2182
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.263583522870862e-4
allele num: 7914
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 242
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 410
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 620
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.7e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.85e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.21e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.1e-1

DP
type: SiteQuality
SIO_000300: 2.84367e5

MQ
type: SiteQuality
SIO_000300: 5.994e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.39e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.11e-1

QD
type: SiteQuality
SIO_000300: 1.222e1

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.25e1
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GenotypeQuality
all individuals: 126
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GenotypeQuality
all individuals: 50
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 8728
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 8
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.124859392575928e-4
allele num: 8890
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7914
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 410
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1632
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 620
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2182
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 242
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.869e0

QD
type: SiteQuality
SIO_000300: 9.15e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.87e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.47e-2

MQRankSum
type: SiteQuality
SIO_000300: 8.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.63e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.29e0

VQSLOD
type: SiteQuality
SIO_000300: 4.64e-1

DP
type: SiteQuality
SIO_000300: 2.84245e5

GenotypeQuality
all individuals: 1513
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 2.5e0
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GenotypeQuality
all individuals: 536
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
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GenotypeQuality
all individuals: 9
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GenotypeQuality
all individuals: 78
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 298
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
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GenotypeQuality
all individuals: 126
bin: 8.25e1
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GenotypeQuality
all individuals: 1150
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8719
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.25e1
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GenotypeQuality
all individuals: 73
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 242
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2182
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1632
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 410
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8888
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.527167045741723e-4
allele num: 7914
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 620
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.84558e5

MQRankSum
type: SiteQuality
SIO_000300: 4.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.52e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.06e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.99e-1

QD
type: SiteQuality
SIO_000300: 1.274e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.08e0

FS
type: SiteQuality
SIO_000300: 3.22e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.11e-1

MQ
type: SiteQuality
SIO_000300: 5.913e1

GenotypeQuality
all individuals: 73
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8736
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
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GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 234
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.128668171557562e-4
allele num: 8860
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 410
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7914
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2186
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 242
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1636
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -4.327e-1

QD
type: SiteQuality
SIO_000300: 1.438e1

MQRankSum
type: SiteQuality
SIO_000300: 1.5e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.43e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.34e0

MQ
type: SiteQuality
SIO_000300: 5.907e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.38e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-2

DP
type: SiteQuality
SIO_000300: 2.83819e5

GenotypeQuality
all individuals: 84
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 9.75e1
variant carriers: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 4.587155963302753e-4
allele num: 2180
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8804
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1632
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7914
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 242
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.439024390243902e-3
allele num: 410
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.86e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.67e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.19e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.03e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.494e0

MQRankSum
type: SiteQuality
SIO_000300: -1.194e0

MQ
type: SiteQuality
SIO_000300: 5.943e1

DP
type: SiteQuality
SIO_000300: 2.83251e5

FS
type: SiteQuality
SIO_000300: 1.101e0

QD
type: SiteQuality
SIO_000300: 1.871e1

GenotypeQuality
all individuals: 298
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
all individuals: 235
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GenotypeQuality
all individuals: 60
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 4
allele frequency: 1.834862385321101e-3
allele num: 2180
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 410
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 244
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8804
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1632
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7914
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.14e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.47e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.52e-1

FS
type: SiteQuality
SIO_000300: 2.731e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.3e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.66e-1

QD
type: SiteQuality
SIO_000300: 1.391e1

DP
type: SiteQuality
SIO_000300: 2.83008e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-2

GenotypeQuality
all individuals: 11
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 244
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 410
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.263583522870862e-4
allele num: 7914
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8794
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1634
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2178
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.59e-2

FS
type: SiteQuality
SIO_000300: 3.269e0

MQRankSum
type: SiteQuality
SIO_000300: 1.29e0

VQSLOD
type: SiteQuality
SIO_000300: -4.63e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 9.44e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.14e-1

DP
type: SiteQuality
SIO_000300: 2.82993e5

MQ
type: SiteQuality
SIO_000300: 5.925e1

QD
type: SiteQuality
SIO_000300: 1.184e1

GenotypeQuality
all individuals: 8
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1688
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
all individuals: 163
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 53
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variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 242
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1628
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.263583522870862e-4
allele num: 7914
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8780
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 410
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2176
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.08e-1

FS
type: SiteQuality
SIO_000300: 5.301e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.7e-2

QD
type: SiteQuality
SIO_000300: 1.194e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.63e-2

VQSLOD
type: SiteQuality
SIO_000300: 7.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.807e0

DP
type: SiteQuality
SIO_000300: 2.82009e5

MQ
type: SiteQuality
SIO_000300: 5.993e1

GenotypeQuality
all individuals: 62
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1700
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 9
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8749
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1628
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 410
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 620
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 242
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2178
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7914
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.140250855188141e-4
allele num: 8770
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.361e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.55e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.5e-2

DP
type: SiteQuality
SIO_000300: 2.81684e5

FS
type: SiteQuality
SIO_000300: 1.1736e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.55e-2

QD
type: SiteQuality
SIO_000300: 1.276e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.65e-1

MQ
type: SiteQuality
SIO_000300: 5.941e1

MQRankSum
type: SiteQuality
SIO_000300: 7.5e-2

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1152
bin: 6.75e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 4

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.140510948905109e-4
allele num: 8768
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7914
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 410
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 1.379944802207912e-3
allele num: 2174
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 242
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1626
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.81694e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.37e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.171e0

VQSLOD
type: SiteQuality
SIO_000300: 1.93e0

MQ
type: SiteQuality
SIO_000300: 5.972e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.35e-2

QD
type: SiteQuality
SIO_000300: 1.561e1

MQRankSum
type: SiteQuality
SIO_000300: 3.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.22e0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 2170
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 410
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.140510948905109e-4
allele num: 8768
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.527167045741723e-4
allele num: 7914
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 242
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.18e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 5.33e0

ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 6.919999999999999e-1

QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.81932e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 3.08e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.95e-1

GenotypeQuality
all individuals: 236
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 54
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 8740
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 9.75e1
variant carriers: 2

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8766
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 410
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele frequency: 1.612903225806452e-3
allele num: 620
num of homozygotes: 0

African
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allele frequency: 4.625346901017577e-4
allele num: 2162
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
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DP
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ClippingRankSum
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BaseQRankSum
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VQSLOD
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SIO_000300: 9.96e-1

ReadPosRankSum
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InbreedingCoeff
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SIO_000300: -1.59e-2

MQ
type: SiteQuality
SIO_000300: 5.96e1

FS
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.304e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 8766
num of homozygotes: 0

South Asian
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allele frequency: 1.263583522870862e-4
allele num: 7914
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1626
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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QD
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FS
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DP
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BaseQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele num: 2158
num of homozygotes: 0

Other
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
allele num: 7914
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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MQ
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FS
type: SiteQuality
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
type: SiteQuality
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1628
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 242
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.141813199360585e-4
allele num: 8758
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 616
num of homozygotes: 0

South Asian
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 2.571e0

InbreedingCoeff
type: SiteQuality
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DP
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QD
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ClippingRankSum
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VQSLOD
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MQRankSum
type: SiteQuality
SIO_000300: 2.97e-1

ReadPosRankSum
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MQ
type: SiteQuality
SIO_000300: 5.779e1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 1
allele frequency: 4.633920296570899e-4
allele num: 2158
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 8754
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.18e0

VQSLOD
type: SiteQuality
SIO_000300: -3.861e-1

MQRankSum
type: SiteQuality
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BaseQRankSum
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DP
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MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 1.231527093596059e-3
allele num: 1624
num of homozygotes: 0

East Asian
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Other
type: Population
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allele frequency: 0.0e0
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Latino
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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MQRankSum
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FS
type: SiteQuality
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ClippingRankSum
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MQ
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BaseQRankSum
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InbreedingCoeff
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SIO_000300: -1.28e-2

ReadPosRankSum
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DP
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SIO_000300: 2.73424e5

QD
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VQSLOD
type: SiteQuality
SIO_000300: 9.21e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Other
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allele num: 192
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European (Finnish)
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European (Non-Finnish)
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African
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Latino
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East Asian
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allele num: 558
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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FS
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QD
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BaseQRankSum
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DP
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MQ
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ReadPosRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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South Asian
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European (Finnish)
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Latino
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Other
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East Asian
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
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FS
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QD
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MQ
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VQSLOD
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DP
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

European (Finnish)
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South Asian
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East Asian
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Latino
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European (Non-Finnish)
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Other
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VQSLOD
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InbreedingCoeff
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MQ
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FS
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MQRankSum
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BaseQRankSum
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QD
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DP
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SIO_000300: 4.97701e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.19e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.67e-1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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