19-35741516-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35741516
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 35741516
    reference: chr 19
allele count: 1
allele frequency: 8.800183043807312e-6
allele num: 113634
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000262627
  ensembl transcript: ENST00000347609
  gene symbol: LSR
  hgvsc: ENST00000347609.4:c.441G>T
  hgvsp: ENST00000347609.4:c.441G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000470630
  ensembl transcript: ENST00000599658
  gene symbol: LSR
  hgvsc: ENST00000599658.1:c.51G>T
  hgvsp: ENST00000599658.1:c.51G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000602044
  gene symbol: LSR
  hgvsc: ENST00000602044.1:n.321G>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472569
  ensembl transcript: ENST00000602122
  gene symbol: LSR
  hgvsc: ENST00000602122.1:c.552G>T
  hgvsp: ENST00000602122.1:c.552G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354575
  ensembl transcript: ENST00000361790
  gene symbol: LSR
  hgvsc: ENST00000361790.3:c.552G>T
  hgvsp: ENST00000361790.3:c.552G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000474797
  ensembl transcript: ENST00000605618
  gene symbol: LSR
  hgvsc: ENST00000605618.1:c.429G>T
  hgvsp: ENST00000605618.1:c.429G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000346976
  ensembl transcript: ENST00000354900
  gene symbol: LSR
  hgvsc: ENST00000354900.3:c.552G>T
  hgvsp: ENST00000354900.3:c.552G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354034
  ensembl transcript: ENST00000360798
  gene symbol: LSR
  hgvsc: ENST00000360798.3:c.552G>T
  hgvsp: ENST00000360798.3:c.552G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000394479
  ensembl transcript: ENST00000427250
  gene symbol: LSR
  hgvsc: ENST00000427250.1:c.408G>T
  hgvsp: ENST00000427250.1:c.408G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000597933
  gene symbol: LSR
  hgvsc: ENST00000597933.1:n.472G>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472154
  ensembl transcript: ENST00000601623
  gene symbol: LSR
  hgvsc: ENST00000601623.1:c.330G>T
  hgvsp: ENST00000601623.1:c.330G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3204
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9804
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29903
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3376
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11170
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val184Val
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD

19-35741518-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35741518
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 35741518
    reference: chr 19
allele count: 1
allele frequency: 8.812280794515236e-6
allele num: 113478
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354034
  ensembl transcript: ENST00000360798
  gene symbol: LSR
  hgvsc: ENST00000360798.3:c.554C>T
  hgvsp: ENSP00000354034.2:p.Thr185Ile
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000346976
  ensembl transcript: ENST00000354900
  gene symbol: LSR
  hgvsc: ENST00000354900.3:c.554C>T
  hgvsp: ENSP00000346976.2:p.Thr185Ile
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000470630
  ensembl transcript: ENST00000599658
  gene symbol: LSR
  hgvsc: ENST00000599658.1:c.53C>T
  hgvsp: ENSP00000470630.1:p.Thr18Ile
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472569
  ensembl transcript: ENST00000602122
  gene symbol: LSR
  hgvsc: ENST00000602122.1:c.554C>T
  hgvsp: ENSP00000472569.1:p.Thr185Ile
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000394479
  ensembl transcript: ENST00000427250
  gene symbol: LSR
  hgvsc: ENST00000427250.1:c.410C>T
  hgvsp: ENSP00000394479.1:p.Thr137Ile
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472154
  ensembl transcript: ENST00000601623
  gene symbol: LSR
  hgvsc: ENST00000601623.1:c.332C>T
  hgvsp: ENSP00000472154.2:p.Thr111Ile
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354575
  ensembl transcript: ENST00000361790
  gene symbol: LSR
  hgvsc: ENST00000361790.3:c.554C>T
  hgvsp: ENSP00000354575.2:p.Thr185Ile
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000602044
  gene symbol: LSR
  hgvsc: ENST00000602044.1:n.323C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000262627
  ensembl transcript: ENST00000347609
  gene symbol: LSR
  hgvsc: ENST00000347609.4:c.443C>T
  hgvsp: ENSP00000262627.3:p.Thr148Ile
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000597933
  gene symbol: LSR
  hgvsc: ENST00000597933.1:n.474C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000474797
  ensembl transcript: ENST00000605618
  gene symbol: LSR
  hgvsc: ENST00000605618.1:c.431C>T
  hgvsp: ENSP00000474797.1:p.Thr144Ile
  variant of: http://identifiers.org/hgnc/29572
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11234
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3418
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9767
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3188
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29889
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr185Ile
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

19-35741522-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35741522
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 35741522
    reference: chr 19
allele count: 2
allele frequency: 1.773961788863068e-5
allele num: 112742
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000394479
  ensembl transcript: ENST00000427250
  gene symbol: LSR
  hgvsc: ENST00000427250.1:c.414G>C
  hgvsp: ENST00000427250.1:c.414G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000474797
  ensembl transcript: ENST00000605618
  gene symbol: LSR
  hgvsc: ENST00000605618.1:c.435G>C
  hgvsp: ENST00000605618.1:c.435G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472154
  ensembl transcript: ENST00000601623
  gene symbol: LSR
  hgvsc: ENST00000601623.1:c.336G>C
  hgvsp: ENST00000601623.1:c.336G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000346976
  ensembl transcript: ENST00000354900
  gene symbol: LSR
  hgvsc: ENST00000354900.3:c.558G>C
  hgvsp: ENST00000354900.3:c.558G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000602044
  gene symbol: LSR
  hgvsc: ENST00000602044.1:n.327G>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472569
  ensembl transcript: ENST00000602122
  gene symbol: LSR
  hgvsc: ENST00000602122.1:c.558G>C
  hgvsp: ENST00000602122.1:c.558G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354034
  ensembl transcript: ENST00000360798
  gene symbol: LSR
  hgvsc: ENST00000360798.3:c.558G>C
  hgvsp: ENST00000360798.3:c.558G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000262627
  ensembl transcript: ENST00000347609
  gene symbol: LSR
  hgvsc: ENST00000347609.4:c.447G>C
  hgvsp: ENST00000347609.4:c.447G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000597933
  gene symbol: LSR
  hgvsc: ENST00000597933.1:n.478G>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354575
  ensembl transcript: ENST00000361790
  gene symbol: LSR
  hgvsc: ENST00000361790.3:c.558G>C
  hgvsp: ENST00000361790.3:c.558G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000470630
  ensembl transcript: ENST00000599658
  gene symbol: LSR
  hgvsc: ENST00000599658.1:c.57G>C
  hgvsp: ENST00000599658.1:c.57G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3289
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11091
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29665
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9700
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3668
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu186Leu
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum

19-35741536-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35741536
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 35741536
    reference: chr 19
allele count: 1
allele frequency: 9.184423218221895e-6
allele num: 108880
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000394479
  ensembl transcript: ENST00000427250
  gene symbol: LSR
  hgvsc: ENST00000427250.1:c.428A>G
  hgvsp: ENSP00000394479.1:p.Gln143Arg
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472154
  ensembl transcript: ENST00000601623
  gene symbol: LSR
  hgvsc: ENST00000601623.1:c.350A>G
  hgvsp: ENSP00000472154.2:p.Gln117Arg
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472569
  ensembl transcript: ENST00000602122
  gene symbol: LSR
  hgvsc: ENST00000602122.1:c.572A>G
  hgvsp: ENSP00000472569.1:p.Gln191Arg
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000474797
  ensembl transcript: ENST00000605618
  gene symbol: LSR
  hgvsc: ENST00000605618.1:c.449A>G
  hgvsp: ENSP00000474797.1:p.Gln150Arg
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354034
  ensembl transcript: ENST00000360798
  gene symbol: LSR
  hgvsc: ENST00000360798.3:c.572A>G
  hgvsp: ENSP00000354034.2:p.Gln191Arg
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000470630
  ensembl transcript: ENST00000599658
  gene symbol: LSR
  hgvsc: ENST00000599658.1:c.71A>G
  hgvsp: ENSP00000470630.1:p.Gln24Arg
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000262627
  ensembl transcript: ENST00000347609
  gene symbol: LSR
  hgvsc: ENST00000347609.4:c.461A>G
  hgvsp: ENSP00000262627.3:p.Gln154Arg
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000602044
  gene symbol: LSR
  hgvsc: ENST00000602044.1:n.341A>G
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000346976
  ensembl transcript: ENST00000354900
  gene symbol: LSR
  hgvsc: ENST00000354900.3:c.572A>G
  hgvsp: ENSP00000346976.2:p.Gln191Arg
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354575
  ensembl transcript: ENST00000361790
  gene symbol: LSR
  hgvsc: ENST00000361790.3:c.572A>G
  hgvsp: ENSP00000354575.2:p.Gln191Arg
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000597933
  gene symbol: LSR
  hgvsc: ENST00000597933.1:n.492A>G
  variant of: http://identifiers.org/hgnc/29572
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1541
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3776
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10609
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9140
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4544
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28313
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln191Arg
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff

19-35741541-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35741541
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 35741541
    reference: chr 19
allele count: 2
allele frequency: 1.864349901189455e-5
allele num: 107276
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472569
  ensembl transcript: ENST00000602122
  gene symbol: LSR
  hgvsc: ENST00000602122.1:c.577C>T
  hgvsp: ENSP00000472569.1:p.Arg193Trp
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000346976
  ensembl transcript: ENST00000354900
  gene symbol: LSR
  hgvsc: ENST00000354900.3:c.577C>T
  hgvsp: ENSP00000346976.2:p.Arg193Trp
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000470630
  ensembl transcript: ENST00000599658
  gene symbol: LSR
  hgvsc: ENST00000599658.1:c.76C>T
  hgvsp: ENSP00000470630.1:p.Arg26Trp
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472154
  ensembl transcript: ENST00000601623
  gene symbol: LSR
  hgvsc: ENST00000601623.1:c.355C>T
  hgvsp: ENSP00000472154.2:p.Arg119Trp
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000597933
  gene symbol: LSR
  hgvsc: ENST00000597933.1:n.497C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000394479
  ensembl transcript: ENST00000427250
  gene symbol: LSR
  hgvsc: ENST00000427250.1:c.433C>T
  hgvsp: ENSP00000394479.1:p.Arg145Trp
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000602044
  gene symbol: LSR
  hgvsc: ENST00000602044.1:n.346C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000262627
  ensembl transcript: ENST00000347609
  gene symbol: LSR
  hgvsc: ENST00000347609.4:c.466C>T
  hgvsp: ENSP00000262627.3:p.Arg156Trp
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000474797
  ensembl transcript: ENST00000605618
  gene symbol: LSR
  hgvsc: ENST00000605618.1:c.454C>T
  hgvsp: ENSP00000474797.1:p.Arg152Trp
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354034
  ensembl transcript: ENST00000360798
  gene symbol: LSR
  hgvsc: ENST00000360798.3:c.577C>T
  hgvsp: ENSP00000354034.2:p.Arg193Trp
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354575
  ensembl transcript: ENST00000361790
  gene symbol: LSR
  hgvsc: ENST00000361790.3:c.577C>T
  hgvsp: ENSP00000354575.2:p.Arg193Trp
  variant of: http://identifiers.org/hgnc/29572
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1898
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27616
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4974
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4062
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10559
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8827
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg193Trp
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

19-35741542-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35741542
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 35741542
    reference: chr 19
allele count: 4
allele frequency: 3.732875433946769e-5
allele num: 107156
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000474797
  ensembl transcript: ENST00000605618
  gene symbol: LSR
  hgvsc: ENST00000605618.1:c.455G>A
  hgvsp: ENSP00000474797.1:p.Arg152Gln
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000346976
  ensembl transcript: ENST00000354900
  gene symbol: LSR
  hgvsc: ENST00000354900.3:c.578G>A
  hgvsp: ENSP00000346976.2:p.Arg193Gln
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000394479
  ensembl transcript: ENST00000427250
  gene symbol: LSR
  hgvsc: ENST00000427250.1:c.434G>A
  hgvsp: ENSP00000394479.1:p.Arg145Gln
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000262627
  ensembl transcript: ENST00000347609
  gene symbol: LSR
  hgvsc: ENST00000347609.4:c.467G>A
  hgvsp: ENSP00000262627.3:p.Arg156Gln
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000470630
  ensembl transcript: ENST00000599658
  gene symbol: LSR
  hgvsc: ENST00000599658.1:c.77G>A
  hgvsp: ENSP00000470630.1:p.Arg26Gln
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472154
  ensembl transcript: ENST00000601623
  gene symbol: LSR
  hgvsc: ENST00000601623.1:c.356G>A
  hgvsp: ENSP00000472154.2:p.Arg119Gln
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354575
  ensembl transcript: ENST00000361790
  gene symbol: LSR
  hgvsc: ENST00000361790.3:c.578G>A
  hgvsp: ENSP00000354575.2:p.Arg193Gln
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000597933
  gene symbol: LSR
  hgvsc: ENST00000597933.1:n.498G>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354034
  ensembl transcript: ENST00000360798
  gene symbol: LSR
  hgvsc: ENST00000360798.3:c.578G>A
  hgvsp: ENSP00000354034.2:p.Arg193Gln
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472569
  ensembl transcript: ENST00000602122
  gene symbol: LSR
  hgvsc: ENST00000602122.1:c.578G>A
  hgvsp: ENSP00000472569.1:p.Arg193Gln
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000602044
  gene symbol: LSR
  hgvsc: ENST00000602044.1:n.347G>A
  variant of: http://identifiers.org/hgnc/29572
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10649
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8755
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4035
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27621
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5005
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1924
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Arg193Gln
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

19-35741552-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35741552
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 35741552
    reference: chr 19
allele count: 4
allele frequency: 3.866153756934913e-5
allele num: 103462
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472569
  ensembl transcript: ENST00000602122
  gene symbol: LSR
  hgvsc: ENST00000602122.1:c.588C>T
  hgvsp: ENST00000602122.1:c.588C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000262627
  ensembl transcript: ENST00000347609
  gene symbol: LSR
  hgvsc: ENST00000347609.4:c.477C>T
  hgvsp: ENST00000347609.4:c.477C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000394479
  ensembl transcript: ENST00000427250
  gene symbol: LSR
  hgvsc: ENST00000427250.1:c.444C>T
  hgvsp: ENST00000427250.1:c.444C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000346976
  ensembl transcript: ENST00000354900
  gene symbol: LSR
  hgvsc: ENST00000354900.3:c.588C>T
  hgvsp: ENST00000354900.3:c.588C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000470630
  ensembl transcript: ENST00000599658
  gene symbol: LSR
  hgvsc: ENST00000599658.1:c.87C>T
  hgvsp: ENST00000599658.1:c.87C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354575
  ensembl transcript: ENST00000361790
  gene symbol: LSR
  hgvsc: ENST00000361790.3:c.588C>T
  hgvsp: ENST00000361790.3:c.588C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472154
  ensembl transcript: ENST00000601623
  gene symbol: LSR
  hgvsc: ENST00000601623.1:c.366C>T
  hgvsp: ENST00000601623.1:c.366C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354034
  ensembl transcript: ENST00000360798
  gene symbol: LSR
  hgvsc: ENST00000360798.3:c.588C>T
  hgvsp: ENST00000360798.3:c.588C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000602044
  gene symbol: LSR
  hgvsc: ENST00000602044.1:n.357C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000474797
  ensembl transcript: ENST00000605618
  gene symbol: LSR
  hgvsc: ENST00000605618.1:c.465C>T
  hgvsp: ENST00000605618.1:c.465C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000597933
  gene symbol: LSR
  hgvsc: ENST00000597933.1:n.508C>T
  variant of: http://identifiers.org/hgnc/29572
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10033
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5740
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1105
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25431
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2916
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7967
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5622
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr196Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

19-35741558-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35741558
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 35741558
    reference: chr 19
allele count: 3
allele frequency: 2.983887010145216e-5
allele num: 100540
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000597933
  gene symbol: LSR
  hgvsc: ENST00000597933.1:n.514C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472154
  ensembl transcript: ENST00000601623
  gene symbol: LSR
  hgvsc: ENST00000601623.1:c.372C>T
  hgvsp: ENST00000601623.1:c.372C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000474797
  ensembl transcript: ENST00000605618
  gene symbol: LSR
  hgvsc: ENST00000605618.1:c.471C>T
  hgvsp: ENST00000605618.1:c.471C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000470630
  ensembl transcript: ENST00000599658
  gene symbol: LSR
  hgvsc: ENST00000599658.1:c.93C>T
  hgvsp: ENST00000599658.1:c.93C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000602044
  gene symbol: LSR
  hgvsc: ENST00000602044.1:n.363C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472569
  ensembl transcript: ENST00000602122
  gene symbol: LSR
  hgvsc: ENST00000602122.1:c.594C>T
  hgvsp: ENST00000602122.1:c.594C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000394479
  ensembl transcript: ENST00000427250
  gene symbol: LSR
  hgvsc: ENST00000427250.1:c.450C>T
  hgvsp: ENST00000427250.1:c.450C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354034
  ensembl transcript: ENST00000360798
  gene symbol: LSR
  hgvsc: ENST00000360798.3:c.594C>T
  hgvsp: ENST00000360798.3:c.594C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354575
  ensembl transcript: ENST00000361790
  gene symbol: LSR
  hgvsc: ENST00000361790.3:c.594C>T
  hgvsp: ENST00000361790.3:c.594C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000346976
  ensembl transcript: ENST00000354900
  gene symbol: LSR
  hgvsc: ENST00000354900.3:c.594C>T
  hgvsp: ENST00000354900.3:c.594C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000262627
  ensembl transcript: ENST00000347609
  gene symbol: LSR
  hgvsc: ENST00000347609.4:c.483C>T
  hgvsp: ENST00000347609.4:c.483C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7320
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3502
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7265
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9399
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6546
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23245
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr198Thr
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

19-35741559-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35741559
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 35741559
    reference: chr 19
allele count: 3
allele frequency: 3.00240192153723e-5
allele num: 99920
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000602044
  gene symbol: LSR
  hgvsc: ENST00000602044.1:n.364G>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000597933
  gene symbol: LSR
  hgvsc: ENST00000597933.1:n.515G>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000470630
  ensembl transcript: ENST00000599658
  gene symbol: LSR
  hgvsc: ENST00000599658.1:c.94G>A
  hgvsp: ENSP00000470630.1:p.Gly32Arg
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000262627
  ensembl transcript: ENST00000347609
  gene symbol: LSR
  hgvsc: ENST00000347609.4:c.484G>A
  hgvsp: ENSP00000262627.3:p.Gly162Arg
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472569
  ensembl transcript: ENST00000602122
  gene symbol: LSR
  hgvsc: ENST00000602122.1:c.595G>A
  hgvsp: ENSP00000472569.1:p.Gly199Arg
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000346976
  ensembl transcript: ENST00000354900
  gene symbol: LSR
  hgvsc: ENST00000354900.3:c.595G>A
  hgvsp: ENSP00000346976.2:p.Gly199Arg
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472154
  ensembl transcript: ENST00000601623
  gene symbol: LSR
  hgvsc: ENST00000601623.1:c.373G>A
  hgvsp: ENSP00000472154.2:p.Gly125Arg
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354575
  ensembl transcript: ENST00000361790
  gene symbol: LSR
  hgvsc: ENST00000361790.3:c.595G>A
  hgvsp: ENSP00000354575.2:p.Gly199Arg
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000474797
  ensembl transcript: ENST00000605618
  gene symbol: LSR
  hgvsc: ENST00000605618.1:c.472G>A
  hgvsp: ENSP00000474797.1:p.Gly158Arg
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354034
  ensembl transcript: ENST00000360798
  gene symbol: LSR
  hgvsc: ENST00000360798.3:c.595G>A
  hgvsp: ENSP00000354034.2:p.Gly199Arg
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000394479
  ensembl transcript: ENST00000427250
  gene symbol: LSR
  hgvsc: ENST00000427250.1:c.451G>A
  hgvsp: ENSP00000394479.1:p.Gly151Arg
  variant of: http://identifiers.org/hgnc/29572
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9329
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6709
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3616
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7033
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22868
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7667
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly199Arg
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum

19-35741559-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35741559
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 35741559
    reference: chr 19
allele count: 1
allele frequency: 1.00080064051241e-5
allele num: 99920
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472569
  ensembl transcript: ENST00000602122
  gene symbol: LSR
  hgvsc: ENST00000602122.1:c.595G>C
  hgvsp: ENSP00000472569.1:p.Gly199Arg
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000474797
  ensembl transcript: ENST00000605618
  gene symbol: LSR
  hgvsc: ENST00000605618.1:c.472G>C
  hgvsp: ENSP00000474797.1:p.Gly158Arg
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354575
  ensembl transcript: ENST00000361790
  gene symbol: LSR
  hgvsc: ENST00000361790.3:c.595G>C
  hgvsp: ENSP00000354575.2:p.Gly199Arg
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000597933
  gene symbol: LSR
  hgvsc: ENST00000597933.1:n.515G>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472154
  ensembl transcript: ENST00000601623
  gene symbol: LSR
  hgvsc: ENST00000601623.1:c.373G>C
  hgvsp: ENSP00000472154.2:p.Gly125Arg
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000470630
  ensembl transcript: ENST00000599658
  gene symbol: LSR
  hgvsc: ENST00000599658.1:c.94G>C
  hgvsp: ENSP00000470630.1:p.Gly32Arg
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000394479
  ensembl transcript: ENST00000427250
  gene symbol: LSR
  hgvsc: ENST00000427250.1:c.451G>C
  hgvsp: ENSP00000394479.1:p.Gly151Arg
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000262627
  ensembl transcript: ENST00000347609
  gene symbol: LSR
  hgvsc: ENST00000347609.4:c.484G>C
  hgvsp: ENSP00000262627.3:p.Gly162Arg
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000346976
  ensembl transcript: ENST00000354900
  gene symbol: LSR
  hgvsc: ENST00000354900.3:c.595G>C
  hgvsp: ENSP00000346976.2:p.Gly199Arg
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000602044
  gene symbol: LSR
  hgvsc: ENST00000602044.1:n.364G>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354034
  ensembl transcript: ENST00000360798
  gene symbol: LSR
  hgvsc: ENST00000360798.3:c.595G>C
  hgvsp: ENSP00000354034.2:p.Gly199Arg
  variant of: http://identifiers.org/hgnc/29572
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6709
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3616
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9329
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7667
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22868
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly199Arg
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP

19-35741580-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35741580
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 35741580
    reference: chr 19
allele count: 1
allele frequency: 1.12709075334746e-5
allele num: 88724
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000602044
  gene symbol: LSR
  hgvsc: ENST00000602044.1:n.367+18G>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000394479
  ensembl transcript: ENST00000427250
  gene symbol: LSR
  hgvsc: ENST00000427250.1:c.454+18G>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000597933
  gene symbol: LSR
  hgvsc: ENST00000597933.1:n.518+18G>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472154
  ensembl transcript: ENST00000601623
  gene symbol: LSR
  hgvsc: ENST00000601623.1:c.376+18G>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354575
  ensembl transcript: ENST00000361790
  gene symbol: LSR
  hgvsc: ENST00000361790.3:c.598+18G>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000262627
  ensembl transcript: ENST00000347609
  gene symbol: LSR
  hgvsc: ENST00000347609.4:c.487+18G>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000470630
  ensembl transcript: ENST00000599658
  gene symbol: LSR
  hgvsc: ENST00000599658.1:c.97+18G>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000346976
  ensembl transcript: ENST00000354900
  gene symbol: LSR
  hgvsc: ENST00000354900.3:c.598+18G>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354034
  ensembl transcript: ENST00000360798
  gene symbol: LSR
  hgvsc: ENST00000360798.3:c.598+18G>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472569
  ensembl transcript: ENST00000602122
  gene symbol: LSR
  hgvsc: ENST00000602122.1:c.598+18G>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000474797
  ensembl transcript: ENST00000605618
  gene symbol: LSR
  hgvsc: ENST00000605618.1:c.475+18G>A
  variant of: http://identifiers.org/hgnc/29572
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5515
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9431
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2381
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5380
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20456
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5813
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9729
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5133
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: Other
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: QD

19-35741581-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35741581
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 35741581
    reference: chr 19
allele count: 1
allele frequency: 1.128107937367447e-5
allele num: 88644
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000602044
  gene symbol: LSR
  hgvsc: ENST00000602044.1:n.367+19G>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472569
  ensembl transcript: ENST00000602122
  gene symbol: LSR
  hgvsc: ENST00000602122.1:c.598+19G>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354034
  ensembl transcript: ENST00000360798
  gene symbol: LSR
  hgvsc: ENST00000360798.3:c.598+19G>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000474797
  ensembl transcript: ENST00000605618
  gene symbol: LSR
  hgvsc: ENST00000605618.1:c.475+19G>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000394479
  ensembl transcript: ENST00000427250
  gene symbol: LSR
  hgvsc: ENST00000427250.1:c.454+19G>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000470630
  ensembl transcript: ENST00000599658
  gene symbol: LSR
  hgvsc: ENST00000599658.1:c.97+19G>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000346976
  ensembl transcript: ENST00000354900
  gene symbol: LSR
  hgvsc: ENST00000354900.3:c.598+19G>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000262627
  ensembl transcript: ENST00000347609
  gene symbol: LSR
  hgvsc: ENST00000347609.4:c.487+19G>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354575
  ensembl transcript: ENST00000361790
  gene symbol: LSR
  hgvsc: ENST00000361790.3:c.598+19G>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472154
  ensembl transcript: ENST00000601623
  gene symbol: LSR
  hgvsc: ENST00000601623.1:c.376+19G>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000597933
  gene symbol: LSR
  hgvsc: ENST00000597933.1:n.518+19G>A
  variant of: http://identifiers.org/hgnc/29572
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9781
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5400
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5835
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2329
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5423
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9430
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20516
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 573
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP

19-35741582-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35741582
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 35741582
    reference: chr 19
allele count: 3
allele frequency: 3.401360544217687e-5
allele num: 88200
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354575
  ensembl transcript: ENST00000361790
  gene symbol: LSR
  hgvsc: ENST00000361790.3:c.598+20G>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000602044
  gene symbol: LSR
  hgvsc: ENST00000602044.1:n.367+20G>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000262627
  ensembl transcript: ENST00000347609
  gene symbol: LSR
  hgvsc: ENST00000347609.4:c.487+20G>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000597933
  gene symbol: LSR
  hgvsc: ENST00000597933.1:n.518+20G>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000470630
  ensembl transcript: ENST00000599658
  gene symbol: LSR
  hgvsc: ENST00000599658.1:c.97+20G>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000474797
  ensembl transcript: ENST00000605618
  gene symbol: LSR
  hgvsc: ENST00000605618.1:c.475+20G>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000394479
  ensembl transcript: ENST00000427250
  gene symbol: LSR
  hgvsc: ENST00000427250.1:c.454+20G>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000346976
  ensembl transcript: ENST00000354900
  gene symbol: LSR
  hgvsc: ENST00000354900.3:c.598+20G>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472569
  ensembl transcript: ENST00000602122
  gene symbol: LSR
  hgvsc: ENST00000602122.1:c.598+20G>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472154
  ensembl transcript: ENST00000601623
  gene symbol: LSR
  hgvsc: ENST00000601623.1:c.376+20G>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354034
  ensembl transcript: ENST00000360798
  gene symbol: LSR
  hgvsc: ENST00000360798.3:c.598+20G>C
  variant of: http://identifiers.org/hgnc/29572
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5580
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2220
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8937
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9897
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5568
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5458
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21029
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12792
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD

19-35741584-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35741584
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 35741584
    reference: chr 19
allele count: 30
allele frequency: 3.461884650003462e-4
allele num: 86658
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354575
  ensembl transcript: ENST00000361790
  gene symbol: LSR
  hgvsc: ENST00000361790.3:c.598+22G>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000602044
  gene symbol: LSR
  hgvsc: ENST00000602044.1:n.367+22G>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000470630
  ensembl transcript: ENST00000599658
  gene symbol: LSR
  hgvsc: ENST00000599658.1:c.97+22G>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354034
  ensembl transcript: ENST00000360798
  gene symbol: LSR
  hgvsc: ENST00000360798.3:c.598+22G>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000474797
  ensembl transcript: ENST00000605618
  gene symbol: LSR
  hgvsc: ENST00000605618.1:c.475+22G>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000394479
  ensembl transcript: ENST00000427250
  gene symbol: LSR
  hgvsc: ENST00000427250.1:c.454+22G>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000597933
  gene symbol: LSR
  hgvsc: ENST00000597933.1:n.518+22G>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472154
  ensembl transcript: ENST00000601623
  gene symbol: LSR
  hgvsc: ENST00000601623.1:c.376+22G>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000262627
  ensembl transcript: ENST00000347609
  gene symbol: LSR
  hgvsc: ENST00000347609.4:c.487+22G>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472569
  ensembl transcript: ENST00000602122
  gene symbol: LSR
  hgvsc: ENST00000602122.1:c.598+22G>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000346976
  ensembl transcript: ENST00000354900
  gene symbol: LSR
  hgvsc: ENST00000354900.3:c.598+22G>A
  variant of: http://identifiers.org/hgnc/29572
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22441
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6461
  bin: 1.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 4740
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1785
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 10232
  bin: 7.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 7259
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5694
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

19-35741598-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35741598
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 35741598
    reference: chr 19
allele count: 15
allele frequency: 1.942803854522847e-4
allele num: 77208
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472569
  ensembl transcript: ENST00000602122
  gene symbol: LSR
  hgvsc: ENST00000602122.1:c.598+36T>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000602044
  gene symbol: LSR
  hgvsc: ENST00000602044.1:n.367+36T>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000597933
  gene symbol: LSR
  hgvsc: ENST00000597933.1:n.518+36T>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000262627
  ensembl transcript: ENST00000347609
  gene symbol: LSR
  hgvsc: ENST00000347609.4:c.487+36T>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000346976
  ensembl transcript: ENST00000354900
  gene symbol: LSR
  hgvsc: ENST00000354900.3:c.598+36T>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000470630
  ensembl transcript: ENST00000599658
  gene symbol: LSR
  hgvsc: ENST00000599658.1:c.97+36T>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000474797
  ensembl transcript: ENST00000605618
  gene symbol: LSR
  hgvsc: ENST00000605618.1:c.475+36T>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354034
  ensembl transcript: ENST00000360798
  gene symbol: LSR
  hgvsc: ENST00000360798.3:c.598+36T>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000394479
  ensembl transcript: ENST00000427250
  gene symbol: LSR
  hgvsc: ENST00000427250.1:c.454+36T>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472154
  ensembl transcript: ENST00000601623
  gene symbol: LSR
  hgvsc: ENST00000601623.1:c.376+36T>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354575
  ensembl transcript: ENST00000361790
  gene symbol: LSR
  hgvsc: ENST00000361790.3:c.598+36T>A
  variant of: http://identifiers.org/hgnc/29572
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6755
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2528
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10258
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23053
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13109
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2087
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 9.25e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS

19-35741602-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35741602
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 35741602
    reference: chr 19
allele count: 3
allele frequency: 4.073872895165671e-5
allele num: 73640
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472569
  ensembl transcript: ENST00000602122
  gene symbol: LSR
  hgvsc: ENST00000602122.1:c.598+40C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000262627
  ensembl transcript: ENST00000347609
  gene symbol: LSR
  hgvsc: ENST00000347609.4:c.487+40C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000470630
  ensembl transcript: ENST00000599658
  gene symbol: LSR
  hgvsc: ENST00000599658.1:c.97+40C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000394479
  ensembl transcript: ENST00000427250
  gene symbol: LSR
  hgvsc: ENST00000427250.1:c.454+40C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000474797
  ensembl transcript: ENST00000605618
  gene symbol: LSR
  hgvsc: ENST00000605618.1:c.475+40C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000346976
  ensembl transcript: ENST00000354900
  gene symbol: LSR
  hgvsc: ENST00000354900.3:c.598+40C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000602044
  gene symbol: LSR
  hgvsc: ENST00000602044.1:n.367+40C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472154
  ensembl transcript: ENST00000601623
  gene symbol: LSR
  hgvsc: ENST00000601623.1:c.376+40C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000597933
  gene symbol: LSR
  hgvsc: ENST00000597933.1:n.518+40C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354575
  ensembl transcript: ENST00000361790
  gene symbol: LSR
  hgvsc: ENST00000361790.3:c.598+40C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354034
  ensembl transcript: ENST00000360798
  gene symbol: LSR
  hgvsc: ENST00000360798.3:c.598+40C>T
  variant of: http://identifiers.org/hgnc/29572
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2510
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22323
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10395
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6841
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1481
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14259
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

19-35741603-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35741603
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 35741603
    reference: chr 19
allele count: 1
allele frequency: 1.369975614434063e-5
allele num: 72994
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354575
  ensembl transcript: ENST00000361790
  gene symbol: LSR
  hgvsc: ENST00000361790.3:c.598+41G>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000262627
  ensembl transcript: ENST00000347609
  gene symbol: LSR
  hgvsc: ENST00000347609.4:c.487+41G>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000346976
  ensembl transcript: ENST00000354900
  gene symbol: LSR
  hgvsc: ENST00000354900.3:c.598+41G>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000597933
  gene symbol: LSR
  hgvsc: ENST00000597933.1:n.518+41G>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000394479
  ensembl transcript: ENST00000427250
  gene symbol: LSR
  hgvsc: ENST00000427250.1:c.454+41G>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000470630
  ensembl transcript: ENST00000599658
  gene symbol: LSR
  hgvsc: ENST00000599658.1:c.97+41G>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354034
  ensembl transcript: ENST00000360798
  gene symbol: LSR
  hgvsc: ENST00000360798.3:c.598+41G>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472154
  ensembl transcript: ENST00000601623
  gene symbol: LSR
  hgvsc: ENST00000601623.1:c.376+41G>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000602044
  gene symbol: LSR
  hgvsc: ENST00000602044.1:n.367+41G>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472569
  ensembl transcript: ENST00000602122
  gene symbol: LSR
  hgvsc: ENST00000602122.1:c.598+41G>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000474797
  ensembl transcript: ENST00000605618
  gene symbol: LSR
  hgvsc: ENST00000605618.1:c.475+41G>A
  variant of: http://identifiers.org/hgnc/29572
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6876
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2537
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14638
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22171
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10219
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff

19-35741603-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35741603
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 35741603
    reference: chr 19
allele count: 1
allele frequency: 1.369975614434063e-5
allele num: 72994
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354575
  ensembl transcript: ENST00000361790
  gene symbol: LSR
  hgvsc: ENST00000361790.3:c.598+41G>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000474797
  ensembl transcript: ENST00000605618
  gene symbol: LSR
  hgvsc: ENST00000605618.1:c.475+41G>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354034
  ensembl transcript: ENST00000360798
  gene symbol: LSR
  hgvsc: ENST00000360798.3:c.598+41G>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000597933
  gene symbol: LSR
  hgvsc: ENST00000597933.1:n.518+41G>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000602044
  gene symbol: LSR
  hgvsc: ENST00000602044.1:n.367+41G>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472569
  ensembl transcript: ENST00000602122
  gene symbol: LSR
  hgvsc: ENST00000602122.1:c.598+41G>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000394479
  ensembl transcript: ENST00000427250
  gene symbol: LSR
  hgvsc: ENST00000427250.1:c.454+41G>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000262627
  ensembl transcript: ENST00000347609
  gene symbol: LSR
  hgvsc: ENST00000347609.4:c.487+41G>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472154
  ensembl transcript: ENST00000601623
  gene symbol: LSR
  hgvsc: ENST00000601623.1:c.376+41G>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000346976
  ensembl transcript: ENST00000354900
  gene symbol: LSR
  hgvsc: ENST00000354900.3:c.598+41G>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000470630
  ensembl transcript: ENST00000599658
  gene symbol: LSR
  hgvsc: ENST00000599658.1:c.97+41G>C
  variant of: http://identifiers.org/hgnc/29572
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 2537
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14638
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22171
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10219
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6876
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5965
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP

19-35741603-G-GGGT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35741603
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 35741606
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 72994
alternate allele: GGGT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000470630
  ensembl transcript: ENST00000599658
  gene symbol: LSR
  hgvsc: ENST00000599658.1:c.97+47_97+49dupTGG
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472154
  ensembl transcript: ENST00000601623
  gene symbol: LSR
  hgvsc: ENST00000601623.1:c.376+47_376+49dupTGG
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472569
  ensembl transcript: ENST00000602122
  gene symbol: LSR
  hgvsc: ENST00000602122.1:c.598+47_598+49dupTGG
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000597933
  gene symbol: LSR
  hgvsc: ENST00000597933.1:n.518+47_518+49dupTGG
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000346976
  ensembl transcript: ENST00000354900
  gene symbol: LSR
  hgvsc: ENST00000354900.3:c.598+47_598+49dupTGG
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354575
  ensembl transcript: ENST00000361790
  gene symbol: LSR
  hgvsc: ENST00000361790.3:c.598+47_598+49dupTGG
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354034
  ensembl transcript: ENST00000360798
  gene symbol: LSR
  hgvsc: ENST00000360798.3:c.598+47_598+49dupTGG
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000394479
  ensembl transcript: ENST00000427250
  gene symbol: LSR
  hgvsc: ENST00000427250.1:c.454+47_454+49dupTGG
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000474797
  ensembl transcript: ENST00000605618
  gene symbol: LSR
  hgvsc: ENST00000605618.1:c.475+47_475+49dupTGG
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000262627
  ensembl transcript: ENST00000347609
  gene symbol: LSR
  hgvsc: ENST00000347609.4:c.487+47_487+49dupTGG
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000602044
  gene symbol: LSR
  hgvsc: ENST00000602044.1:n.367+47_367+49dupTGG
  variant of: http://identifiers.org/hgnc/29572
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 22171
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14638
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10219
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2537
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6876
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7519
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD

19-35741612-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35741612
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 35741612
    reference: chr 19
allele count: 1
allele frequency: 1.471150734104216e-5
allele num: 67974
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472154
  ensembl transcript: ENST00000601623
  gene symbol: LSR
  hgvsc: ENST00000601623.1:c.376+50G>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472569
  ensembl transcript: ENST00000602122
  gene symbol: LSR
  hgvsc: ENST00000602122.1:c.598+50G>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354034
  ensembl transcript: ENST00000360798
  gene symbol: LSR
  hgvsc: ENST00000360798.3:c.598+50G>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000262627
  ensembl transcript: ENST00000347609
  gene symbol: LSR
  hgvsc: ENST00000347609.4:c.487+50G>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000470630
  ensembl transcript: ENST00000599658
  gene symbol: LSR
  hgvsc: ENST00000599658.1:c.97+50G>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000346976
  ensembl transcript: ENST00000354900
  gene symbol: LSR
  hgvsc: ENST00000354900.3:c.598+50G>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000597933
  gene symbol: LSR
  hgvsc: ENST00000597933.1:n.518+50G>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000394479
  ensembl transcript: ENST00000427250
  gene symbol: LSR
  hgvsc: ENST00000427250.1:c.454+50G>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354575
  ensembl transcript: ENST00000361790
  gene symbol: LSR
  hgvsc: ENST00000361790.3:c.598+50G>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000474797
  ensembl transcript: ENST00000605618
  gene symbol: LSR
  hgvsc: ENST00000605618.1:c.475+50G>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000602044
  gene symbol: LSR
  hgvsc: ENST00000602044.1:n.367+50G>C
  variant of: http://identifiers.org/hgnc/29572
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3034
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16654
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9686
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6865
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20621
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7576
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ

http://identifiers.org/exac.variant/19-35749815-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35749815
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 35749815
    reference: chr 19
allele count: 1
allele frequency: 8.2917364554485e-6
allele num: 120602
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000474797
  ensembl transcript: ENST00000605618
  gene symbol: LSR
  hgvsc: ENST00000605618.1:c.476-7447A>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354575
  ensembl transcript: ENST00000361790
  gene symbol: LSR
  hgvsc: ENST00000361790.3:c.599-33A>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000470630
  ensembl transcript: ENST00000599658
  gene symbol: LSR
  hgvsc: ENST00000599658.1:c.98-33A>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472569
  ensembl transcript: ENST00000602122
  gene symbol: LSR
  hgvsc: ENST00000602122.1:c.599-33A>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000394479
  ensembl transcript: ENST00000427250
  gene symbol: LSR
  hgvsc: ENST00000427250.1:c.455-7447A>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472154
  ensembl transcript: ENST00000601623
  gene symbol: LSR
  hgvsc: ENST00000601623.1:c.377-33A>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000346976
  ensembl transcript: ENST00000354900
  gene symbol: LSR
  hgvsc: ENST00000354900.3:c.599-33A>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354034
  ensembl transcript: ENST00000360798
  gene symbol: LSR
  hgvsc: ENST00000360798.3:c.599-33A>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000597933
  gene symbol: LSR
  hgvsc: ENST00000597933.1:n.519-33A>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000262627
  ensembl transcript: ENST00000347609
  gene symbol: LSR
  hgvsc: ENST00000347609.4:c.488-33A>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000602044
  gene symbol: LSR
  hgvsc: ENST00000602044.1:n.368-33A>C
  variant of: http://identifiers.org/hgnc/29572
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9756
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7803
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3103
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10012
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3637
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4563
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6249
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1834
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8702
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24153
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum

19-35749825-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35749825
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 35749825
    reference: chr 19
allele count: 29
allele frequency: 2.403646912556983e-4
allele num: 120650
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472154
  ensembl transcript: ENST00000601623
  gene symbol: LSR
  hgvsc: ENST00000601623.1:c.377-23C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000262627
  ensembl transcript: ENST00000347609
  gene symbol: LSR
  hgvsc: ENST00000347609.4:c.488-23C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000597933
  gene symbol: LSR
  hgvsc: ENST00000597933.1:n.519-23C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000346976
  ensembl transcript: ENST00000354900
  gene symbol: LSR
  hgvsc: ENST00000354900.3:c.599-23C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000474797
  ensembl transcript: ENST00000605618
  gene symbol: LSR
  hgvsc: ENST00000605618.1:c.476-7437C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000394479
  ensembl transcript: ENST00000427250
  gene symbol: LSR
  hgvsc: ENST00000427250.1:c.455-7437C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000470630
  ensembl transcript: ENST00000599658
  gene symbol: LSR
  hgvsc: ENST00000599658.1:c.98-23C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354034
  ensembl transcript: ENST00000360798
  gene symbol: LSR
  hgvsc: ENST00000360798.3:c.599-23C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472569
  ensembl transcript: ENST00000602122
  gene symbol: LSR
  hgvsc: ENST00000602122.1:c.599-23C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000602044
  gene symbol: LSR
  hgvsc: ENST00000602044.1:n.368-23C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354575
  ensembl transcript: ENST00000361790
  gene symbol: LSR
  hgvsc: ENST00000361790.3:c.599-23C>T
  variant of: http://identifiers.org/hgnc/29572
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7801
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8706
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9777
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10125
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3100
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4559
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3737
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6251
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1830
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum

19-35749827-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35749827
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 35749827
    reference: chr 19
allele count: 1
allele frequency: 8.286789200656313e-6
allele num: 120674
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472569
  ensembl transcript: ENST00000602122
  gene symbol: LSR
  hgvsc: ENST00000602122.1:c.599-21C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000470630
  ensembl transcript: ENST00000599658
  gene symbol: LSR
  hgvsc: ENST00000599658.1:c.98-21C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000394479
  ensembl transcript: ENST00000427250
  gene symbol: LSR
  hgvsc: ENST00000427250.1:c.455-7435C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000346976
  ensembl transcript: ENST00000354900
  gene symbol: LSR
  hgvsc: ENST00000354900.3:c.599-21C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000602044
  gene symbol: LSR
  hgvsc: ENST00000602044.1:n.368-21C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354034
  ensembl transcript: ENST00000360798
  gene symbol: LSR
  hgvsc: ENST00000360798.3:c.599-21C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472154
  ensembl transcript: ENST00000601623
  gene symbol: LSR
  hgvsc: ENST00000601623.1:c.377-21C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354575
  ensembl transcript: ENST00000361790
  gene symbol: LSR
  hgvsc: ENST00000361790.3:c.599-21C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000262627
  ensembl transcript: ENST00000347609
  gene symbol: LSR
  hgvsc: ENST00000347609.4:c.488-21C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000474797
  ensembl transcript: ENST00000605618
  gene symbol: LSR
  hgvsc: ENST00000605618.1:c.476-7435C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000597933
  gene symbol: LSR
  hgvsc: ENST00000597933.1:n.519-21C>T
  variant of: http://identifiers.org/hgnc/29572
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1829
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8708
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9786
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3098
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3758
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10148
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4559
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6252
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7805
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

19-35749829-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35749829
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 35749829
    reference: chr 19
allele count: 8
allele frequency: 6.628332808590319e-5
allele num: 120694
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000394479
  ensembl transcript: ENST00000427250
  gene symbol: LSR
  hgvsc: ENST00000427250.1:c.455-7433C>G
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000470630
  ensembl transcript: ENST00000599658
  gene symbol: LSR
  hgvsc: ENST00000599658.1:c.98-19C>G
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000597933
  gene symbol: LSR
  hgvsc: ENST00000597933.1:n.519-19C>G
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472154
  ensembl transcript: ENST00000601623
  gene symbol: LSR
  hgvsc: ENST00000601623.1:c.377-19C>G
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354575
  ensembl transcript: ENST00000361790
  gene symbol: LSR
  hgvsc: ENST00000361790.3:c.599-19C>G
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000346976
  ensembl transcript: ENST00000354900
  gene symbol: LSR
  hgvsc: ENST00000354900.3:c.599-19C>G
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000474797
  ensembl transcript: ENST00000605618
  gene symbol: LSR
  hgvsc: ENST00000605618.1:c.476-7433C>G
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000262627
  ensembl transcript: ENST00000347609
  gene symbol: LSR
  hgvsc: ENST00000347609.4:c.488-19C>G
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354034
  ensembl transcript: ENST00000360798
  gene symbol: LSR
  hgvsc: ENST00000360798.3:c.599-19C>G
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472569
  ensembl transcript: ENST00000602122
  gene symbol: LSR
  hgvsc: ENST00000602122.1:c.599-19C>G
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000602044
  gene symbol: LSR
  hgvsc: ENST00000602044.1:n.368-19C>G
  variant of: http://identifiers.org/hgnc/29572
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7805
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1829
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8705
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9789
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3792
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3099
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10169
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4558
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6252
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum

19-35749840-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35749840
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 35749840
    reference: chr 19
allele count: 34
allele frequency: 2.814755944102258e-4
allele num: 120792
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000602044
  gene symbol: LSR
  hgvsc: ENST00000602044.1:n.368-8C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000470630
  ensembl transcript: ENST00000599658
  gene symbol: LSR
  hgvsc: ENST00000599658.1:c.98-8C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000394479
  ensembl transcript: ENST00000427250
  gene symbol: LSR
  hgvsc: ENST00000427250.1:c.455-7422C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472569
  ensembl transcript: ENST00000602122
  gene symbol: LSR
  hgvsc: ENST00000602122.1:c.599-8C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000597933
  gene symbol: LSR
  hgvsc: ENST00000597933.1:n.519-8C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000262627
  ensembl transcript: ENST00000347609
  gene symbol: LSR
  hgvsc: ENST00000347609.4:c.488-8C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354034
  ensembl transcript: ENST00000360798
  gene symbol: LSR
  hgvsc: ENST00000360798.3:c.599-8C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472154
  ensembl transcript: ENST00000601623
  gene symbol: LSR
  hgvsc: ENST00000601623.1:c.377-8C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000474797
  ensembl transcript: ENST00000605618
  gene symbol: LSR
  hgvsc: ENST00000605618.1:c.476-7422C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354575
  ensembl transcript: ENST00000361790
  gene symbol: LSR
  hgvsc: ENST00000361790.3:c.599-8C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000346976
  ensembl transcript: ENST00000354900
  gene symbol: LSR
  hgvsc: ENST00000354900.3:c.599-8C>T
  variant of: http://identifiers.org/hgnc/29572
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3960
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3098
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9792
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8704
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6249
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10219
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1835
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 7799
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.599-8C>T
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum

19-35749844-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35749844
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 35749844
    reference: chr 19
allele count: 1
allele frequency: 8.275953389830508e-6
allele num: 120832
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000346976
  ensembl transcript: ENST00000354900
  gene symbol: LSR
  hgvsc: ENST00000354900.3:c.599-4T>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000602044
  gene symbol: LSR
  hgvsc: ENST00000602044.1:n.368-4T>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000394479
  ensembl transcript: ENST00000427250
  gene symbol: LSR
  hgvsc: ENST00000427250.1:c.455-7418T>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000474797
  ensembl transcript: ENST00000605618
  gene symbol: LSR
  hgvsc: ENST00000605618.1:c.476-7418T>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354575
  ensembl transcript: ENST00000361790
  gene symbol: LSR
  hgvsc: ENST00000361790.3:c.599-4T>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472154
  ensembl transcript: ENST00000601623
  gene symbol: LSR
  hgvsc: ENST00000601623.1:c.377-4T>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354034
  ensembl transcript: ENST00000360798
  gene symbol: LSR
  hgvsc: ENST00000360798.3:c.599-4T>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000262627
  ensembl transcript: ENST00000347609
  gene symbol: LSR
  hgvsc: ENST00000347609.4:c.488-4T>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472569
  ensembl transcript: ENST00000602122
  gene symbol: LSR
  hgvsc: ENST00000602122.1:c.599-4T>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000597933
  gene symbol: LSR
  hgvsc: ENST00000597933.1:n.519-4T>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000470630
  ensembl transcript: ENST00000599658
  gene symbol: LSR
  hgvsc: ENST00000599658.1:c.98-4T>C
  variant of: http://identifiers.org/hgnc/29572
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1831
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4558
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3098
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1295
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6251
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10249
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8705
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9804
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4013
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.599-4T>C
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: South Asian
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff

19-35749846-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35749846
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 35749846
    reference: chr 19
allele count: 1
allele frequency: 8.274309922552459e-6
allele num: 120856
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000602044
  gene symbol: LSR
  hgvsc: ENST00000602044.1:n.368-2A>G
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000262627
  ensembl transcript: ENST00000347609
  gene symbol: LSR
  hgvsc: ENST00000347609.4:c.488-2A>G
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000597933
  gene symbol: LSR
  hgvsc: ENST00000597933.1:n.519-2A>G
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472569
  ensembl transcript: ENST00000602122
  gene symbol: LSR
  hgvsc: ENST00000602122.1:c.599-2A>G
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000474797
  ensembl transcript: ENST00000605618
  gene symbol: LSR
  hgvsc: ENST00000605618.1:c.476-7416A>G
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354575
  ensembl transcript: ENST00000361790
  gene symbol: LSR
  hgvsc: ENST00000361790.3:c.599-2A>G
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472154
  ensembl transcript: ENST00000601623
  gene symbol: LSR
  hgvsc: ENST00000601623.1:c.377-2A>G
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354034
  ensembl transcript: ENST00000360798
  gene symbol: LSR
  hgvsc: ENST00000360798.3:c.599-2A>G
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000470630
  ensembl transcript: ENST00000599658
  gene symbol: LSR
  hgvsc: ENST00000599658.1:c.98-2A>G
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000346976
  ensembl transcript: ENST00000354900
  gene symbol: LSR
  hgvsc: ENST00000354900.3:c.599-2A>G
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000394479
  ensembl transcript: ENST00000427250
  gene symbol: LSR
  hgvsc: ENST00000427250.1:c.455-7416A>G
  variant of: http://identifiers.org/hgnc/29572
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4030
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4558
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7806
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6251
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8705
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3097
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10259
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1295
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1831
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9804
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5689
  bin: 6.75e1
  variant carriers: 0
hgvs: c.599-2A>G
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ

19-35749864-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35749864
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 35749864
    reference: chr 19
allele count: 1
allele frequency: 8.263370132874991e-6
allele num: 121016
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354034
  ensembl transcript: ENST00000360798
  gene symbol: LSR
  hgvsc: ENST00000360798.3:c.615T>C
  hgvsp: ENST00000360798.3:c.615T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000394479
  ensembl transcript: ENST00000427250
  gene symbol: LSR
  hgvsc: ENST00000427250.1:c.455-7398T>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472569
  ensembl transcript: ENST00000602122
  gene symbol: LSR
  hgvsc: ENST00000602122.1:c.615T>C
  hgvsp: ENST00000602122.1:c.615T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000262627
  ensembl transcript: ENST00000347609
  gene symbol: LSR
  hgvsc: ENST00000347609.4:c.504T>C
  hgvsp: ENST00000347609.4:c.504T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000346976
  ensembl transcript: ENST00000354900
  gene symbol: LSR
  hgvsc: ENST00000354900.3:c.615T>C
  hgvsp: ENST00000354900.3:c.615T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000470630
  ensembl transcript: ENST00000599658
  gene symbol: LSR
  hgvsc: ENST00000599658.1:c.114T>C
  hgvsp: ENST00000599658.1:c.114T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354575
  ensembl transcript: ENST00000361790
  gene symbol: LSR
  hgvsc: ENST00000361790.3:c.615T>C
  hgvsp: ENST00000361790.3:c.615T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000602044
  gene symbol: LSR
  hgvsc: ENST00000602044.1:n.384T>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000474797
  ensembl transcript: ENST00000605618
  gene symbol: LSR
  hgvsc: ENST00000605618.1:c.476-7398T>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000597933
  gene symbol: LSR
  hgvsc: ENST00000597933.1:n.535T>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472154
  ensembl transcript: ENST00000601623
  gene symbol: LSR
  hgvsc: ENST00000601623.1:c.393T>C
  hgvsp: ENST00000601623.1:c.393T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1832
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4143
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10297
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3097
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1295
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6250
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4558
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7806
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8706
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9814
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Phe205Phe
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: South Asian
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

19-35749873-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35749873
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 35749873
    reference: chr 19
allele count: 2
allele frequency: 1.65218253312626e-5
allele num: 121052
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472569
  ensembl transcript: ENST00000602122
  gene symbol: LSR
  hgvsc: ENST00000602122.1:c.624G>A
  hgvsp: ENST00000602122.1:c.624G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000470630
  ensembl transcript: ENST00000599658
  gene symbol: LSR
  hgvsc: ENST00000599658.1:c.123G>A
  hgvsp: ENST00000599658.1:c.123G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000262627
  ensembl transcript: ENST00000347609
  gene symbol: LSR
  hgvsc: ENST00000347609.4:c.513G>A
  hgvsp: ENST00000347609.4:c.513G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354575
  ensembl transcript: ENST00000361790
  gene symbol: LSR
  hgvsc: ENST00000361790.3:c.624G>A
  hgvsp: ENST00000361790.3:c.624G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000602044
  gene symbol: LSR
  hgvsc: ENST00000602044.1:n.393G>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000394479
  ensembl transcript: ENST00000427250
  gene symbol: LSR
  hgvsc: ENST00000427250.1:c.455-7389G>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000346976
  ensembl transcript: ENST00000354900
  gene symbol: LSR
  hgvsc: ENST00000354900.3:c.624G>A
  hgvsp: ENST00000354900.3:c.624G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354034
  ensembl transcript: ENST00000360798
  gene symbol: LSR
  hgvsc: ENST00000360798.3:c.624G>A
  hgvsp: ENST00000360798.3:c.624G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472154
  ensembl transcript: ENST00000601623
  gene symbol: LSR
  hgvsc: ENST00000601623.1:c.402G>A
  hgvsp: ENST00000601623.1:c.402G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000597933
  gene symbol: LSR
  hgvsc: ENST00000597933.1:n.544G>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000474797
  ensembl transcript: ENST00000605618
  gene symbol: LSR
  hgvsc: ENST00000605618.1:c.476-7389G>A
  variant of: http://identifiers.org/hgnc/29572
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1831
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6250
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4559
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3097
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4126
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7807
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1295
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8709
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9817
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10332
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr208Thr
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

19-35749875-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35749875
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 35749875
    reference: chr 19
allele count: 1
allele frequency: 8.259548037531387e-6
allele num: 121072
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000394479
  ensembl transcript: ENST00000427250
  gene symbol: LSR
  hgvsc: ENST00000427250.1:c.455-7387C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000474797
  ensembl transcript: ENST00000605618
  gene symbol: LSR
  hgvsc: ENST00000605618.1:c.476-7387C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354034
  ensembl transcript: ENST00000360798
  gene symbol: LSR
  hgvsc: ENST00000360798.3:c.626C>T
  hgvsp: ENSP00000354034.2:p.Ala209Val
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000262627
  ensembl transcript: ENST00000347609
  gene symbol: LSR
  hgvsc: ENST00000347609.4:c.515C>T
  hgvsp: ENSP00000262627.3:p.Ala172Val
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472569
  ensembl transcript: ENST00000602122
  gene symbol: LSR
  hgvsc: ENST00000602122.1:c.626C>T
  hgvsp: ENSP00000472569.1:p.Ala209Val
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354575
  ensembl transcript: ENST00000361790
  gene symbol: LSR
  hgvsc: ENST00000361790.3:c.626C>T
  hgvsp: ENSP00000354575.2:p.Ala209Val
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000346976
  ensembl transcript: ENST00000354900
  gene symbol: LSR
  hgvsc: ENST00000354900.3:c.626C>T
  hgvsp: ENSP00000346976.2:p.Ala209Val
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472154
  ensembl transcript: ENST00000601623
  gene symbol: LSR
  hgvsc: ENST00000601623.1:c.404C>T
  hgvsp: ENSP00000472154.2:p.Ala135Val
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000470630
  ensembl transcript: ENST00000599658
  gene symbol: LSR
  hgvsc: ENST00000599658.1:c.125C>T
  hgvsp: ENSP00000470630.1:p.Ala42Val
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000602044
  gene symbol: LSR
  hgvsc: ENST00000602044.1:n.395C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000597933
  gene symbol: LSR
  hgvsc: ENST00000597933.1:n.546C>T
  variant of: http://identifiers.org/hgnc/29572
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9823
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6250
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8706
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10330
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3096
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4133
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7809
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1831
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4559
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1295
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala209Val
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQ

19-35749878-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35749878
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 35749878
    reference: chr 19
allele count: 2
allele frequency: 1.651636772041093e-5
allele num: 121092
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000474797
  ensembl transcript: ENST00000605618
  gene symbol: LSR
  hgvsc: ENST00000605618.1:c.476-7384G>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000262627
  ensembl transcript: ENST00000347609
  gene symbol: LSR
  hgvsc: ENST00000347609.4:c.518G>A
  hgvsp: ENSP00000262627.3:p.Trp173Ter
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472569
  ensembl transcript: ENST00000602122
  gene symbol: LSR
  hgvsc: ENST00000602122.1:c.629G>A
  hgvsp: ENSP00000472569.1:p.Trp210Ter
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354575
  ensembl transcript: ENST00000361790
  gene symbol: LSR
  hgvsc: ENST00000361790.3:c.629G>A
  hgvsp: ENSP00000354575.2:p.Trp210Ter
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472154
  ensembl transcript: ENST00000601623
  gene symbol: LSR
  hgvsc: ENST00000601623.1:c.407G>A
  hgvsp: ENSP00000472154.2:p.Trp136Ter
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000602044
  gene symbol: LSR
  hgvsc: ENST00000602044.1:n.398G>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354034
  ensembl transcript: ENST00000360798
  gene symbol: LSR
  hgvsc: ENST00000360798.3:c.629G>A
  hgvsp: ENSP00000354034.2:p.Trp210Ter
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000346976
  ensembl transcript: ENST00000354900
  gene symbol: LSR
  hgvsc: ENST00000354900.3:c.629G>A
  hgvsp: ENSP00000346976.2:p.Trp210Ter
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000394479
  ensembl transcript: ENST00000427250
  gene symbol: LSR
  hgvsc: ENST00000427250.1:c.455-7384G>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000597933
  gene symbol: LSR
  hgvsc: ENST00000597933.1:n.549G>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000470630
  ensembl transcript: ENST00000599658
  gene symbol: LSR
  hgvsc: ENST00000599658.1:c.128G>A
  hgvsp: ENSP00000470630.1:p.Trp43Ter
  variant of: http://identifiers.org/hgnc/29572
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10341
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7812
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3095
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8706
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6250
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9819
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1831
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4562
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4139
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1295
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Trp210Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

19-35749887-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35749887
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 35749887
    reference: chr 19
allele count: 1
allele frequency: 8.254230293025175e-6
allele num: 121150
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000346976
  ensembl transcript: ENST00000354900
  gene symbol: LSR
  hgvsc: ENST00000354900.3:c.638G>A
  hgvsp: ENSP00000346976.2:p.Ser213Asn
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472154
  ensembl transcript: ENST00000601623
  gene symbol: LSR
  hgvsc: ENST00000601623.1:c.416G>A
  hgvsp: ENSP00000472154.2:p.Ser139Asn
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000394479
  ensembl transcript: ENST00000427250
  gene symbol: LSR
  hgvsc: ENST00000427250.1:c.455-7375G>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000597933
  gene symbol: LSR
  hgvsc: ENST00000597933.1:n.558G>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354575
  ensembl transcript: ENST00000361790
  gene symbol: LSR
  hgvsc: ENST00000361790.3:c.638G>A
  hgvsp: ENSP00000354575.2:p.Ser213Asn
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354034
  ensembl transcript: ENST00000360798
  gene symbol: LSR
  hgvsc: ENST00000360798.3:c.638G>A
  hgvsp: ENSP00000354034.2:p.Ser213Asn
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472569
  ensembl transcript: ENST00000602122
  gene symbol: LSR
  hgvsc: ENST00000602122.1:c.638G>A
  hgvsp: ENSP00000472569.1:p.Ser213Asn
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000470630
  ensembl transcript: ENST00000599658
  gene symbol: LSR
  hgvsc: ENST00000599658.1:c.137G>A
  hgvsp: ENSP00000470630.1:p.Ser46Asn
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000474797
  ensembl transcript: ENST00000605618
  gene symbol: LSR
  hgvsc: ENST00000605618.1:c.476-7375G>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000262627
  ensembl transcript: ENST00000347609
  gene symbol: LSR
  hgvsc: ENST00000347609.4:c.527G>A
  hgvsp: ENSP00000262627.3:p.Ser176Asn
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000602044
  gene symbol: LSR
  hgvsc: ENST00000602044.1:n.407G>A
  variant of: http://identifiers.org/hgnc/29572
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 4559
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4171
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9812
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1831
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6251
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7805
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8704
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10376
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3094
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1295
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser213Asn
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum

19-35749906-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35749906
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 35749906
    reference: chr 19
allele count: 3
allele frequency: 2.475942095967516e-5
allele num: 121166
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354034
  ensembl transcript: ENST00000360798
  gene symbol: LSR
  hgvsc: ENST00000360798.3:c.657C>T
  hgvsp: ENST00000360798.3:c.657C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000470630
  ensembl transcript: ENST00000599658
  gene symbol: LSR
  hgvsc: ENST00000599658.1:c.156C>T
  hgvsp: ENST00000599658.1:c.156C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000262627
  ensembl transcript: ENST00000347609
  gene symbol: LSR
  hgvsc: ENST00000347609.4:c.546C>T
  hgvsp: ENST00000347609.4:c.546C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354575
  ensembl transcript: ENST00000361790
  gene symbol: LSR
  hgvsc: ENST00000361790.3:c.657C>T
  hgvsp: ENST00000361790.3:c.657C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000394479
  ensembl transcript: ENST00000427250
  gene symbol: LSR
  hgvsc: ENST00000427250.1:c.455-7356C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472569
  ensembl transcript: ENST00000602122
  gene symbol: LSR
  hgvsc: ENST00000602122.1:c.657C>T
  hgvsp: ENST00000602122.1:c.657C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000602044
  gene symbol: LSR
  hgvsc: ENST00000602044.1:n.426C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472154
  ensembl transcript: ENST00000601623
  gene symbol: LSR
  hgvsc: ENST00000601623.1:c.435C>T
  hgvsp: ENST00000601623.1:c.435C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000474797
  ensembl transcript: ENST00000605618
  gene symbol: LSR
  hgvsc: ENST00000605618.1:c.476-7356C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000346976
  ensembl transcript: ENST00000354900
  gene symbol: LSR
  hgvsc: ENST00000354900.3:c.657C>T
  hgvsp: ENST00000354900.3:c.657C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000597933
  gene symbol: LSR
  hgvsc: ENST00000597933.1:n.577C>T
  variant of: http://identifiers.org/hgnc/29572
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1832
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10346
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3095
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4134
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7804
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9811
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8700
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6252
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4561
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser219Ser
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff

19-35749910-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35749910
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 35749910
    reference: chr 19
allele count: 1
allele frequency: 8.252867871585376e-6
allele num: 121170
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000602044
  gene symbol: LSR
  hgvsc: ENST00000602044.1:n.430G>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472154
  ensembl transcript: ENST00000601623
  gene symbol: LSR
  hgvsc: ENST00000601623.1:c.439G>A
  hgvsp: ENSP00000472154.2:p.Val147Ile
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000394479
  ensembl transcript: ENST00000427250
  gene symbol: LSR
  hgvsc: ENST00000427250.1:c.455-7352G>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354575
  ensembl transcript: ENST00000361790
  gene symbol: LSR
  hgvsc: ENST00000361790.3:c.661G>A
  hgvsp: ENSP00000354575.2:p.Val221Ile
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472569
  ensembl transcript: ENST00000602122
  gene symbol: LSR
  hgvsc: ENST00000602122.1:c.661G>A
  hgvsp: ENSP00000472569.1:p.Val221Ile
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000474797
  ensembl transcript: ENST00000605618
  gene symbol: LSR
  hgvsc: ENST00000605618.1:c.476-7352G>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000262627
  ensembl transcript: ENST00000347609
  gene symbol: LSR
  hgvsc: ENST00000347609.4:c.550G>A
  hgvsp: ENSP00000262627.3:p.Val184Ile
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354034
  ensembl transcript: ENST00000360798
  gene symbol: LSR
  hgvsc: ENST00000360798.3:c.661G>A
  hgvsp: ENSP00000354034.2:p.Val221Ile
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000346976
  ensembl transcript: ENST00000354900
  gene symbol: LSR
  hgvsc: ENST00000354900.3:c.661G>A
  hgvsp: ENSP00000346976.2:p.Val221Ile
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000470630
  ensembl transcript: ENST00000599658
  gene symbol: LSR
  hgvsc: ENST00000599658.1:c.160G>A
  hgvsp: ENSP00000470630.1:p.Val54Ile
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000597933
  gene symbol: LSR
  hgvsc: ENST00000597933.1:n.581G>A
  variant of: http://identifiers.org/hgnc/29572
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1295
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4146
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1831
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4558
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6249
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3094
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9806
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10330
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7805
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8697
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val221Ile
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

19-35749912-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35749912
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 35749912
    reference: chr 19
allele count: 1
allele frequency: 8.253140319891718e-6
allele num: 121166
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354575
  ensembl transcript: ENST00000361790
  gene symbol: LSR
  hgvsc: ENST00000361790.3:c.663C>G
  hgvsp: ENST00000361790.3:c.663C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354034
  ensembl transcript: ENST00000360798
  gene symbol: LSR
  hgvsc: ENST00000360798.3:c.663C>G
  hgvsp: ENST00000360798.3:c.663C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000474797
  ensembl transcript: ENST00000605618
  gene symbol: LSR
  hgvsc: ENST00000605618.1:c.476-7350C>G
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000597933
  gene symbol: LSR
  hgvsc: ENST00000597933.1:n.583C>G
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000346976
  ensembl transcript: ENST00000354900
  gene symbol: LSR
  hgvsc: ENST00000354900.3:c.663C>G
  hgvsp: ENST00000354900.3:c.663C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472154
  ensembl transcript: ENST00000601623
  gene symbol: LSR
  hgvsc: ENST00000601623.1:c.441C>G
  hgvsp: ENST00000601623.1:c.441C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000262627
  ensembl transcript: ENST00000347609
  gene symbol: LSR
  hgvsc: ENST00000347609.4:c.552C>G
  hgvsp: ENST00000347609.4:c.552C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000394479
  ensembl transcript: ENST00000427250
  gene symbol: LSR
  hgvsc: ENST00000427250.1:c.455-7350C>G
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472569
  ensembl transcript: ENST00000602122
  gene symbol: LSR
  hgvsc: ENST00000602122.1:c.663C>G
  hgvsp: ENST00000602122.1:c.663C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000470630
  ensembl transcript: ENST00000599658
  gene symbol: LSR
  hgvsc: ENST00000599658.1:c.162C>G
  hgvsp: ENST00000599658.1:c.162C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000602044
  gene symbol: LSR
  hgvsc: ENST00000602044.1:n.432C>G
  variant of: http://identifiers.org/hgnc/29572
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4140
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1831
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8695
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7805
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6249
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1295
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9802
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10318
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3094
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4557
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val221Val
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: DP

19-35749924-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35749924
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 35749924
    reference: chr 19
allele count: 3
allele frequency: 2.476596166229135e-5
allele num: 121134
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354034
  ensembl transcript: ENST00000360798
  gene symbol: LSR
  hgvsc: ENST00000360798.3:c.675C>T
  hgvsp: ENST00000360798.3:c.675C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000346976
  ensembl transcript: ENST00000354900
  gene symbol: LSR
  hgvsc: ENST00000354900.3:c.675C>T
  hgvsp: ENST00000354900.3:c.675C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472569
  ensembl transcript: ENST00000602122
  gene symbol: LSR
  hgvsc: ENST00000602122.1:c.675C>T
  hgvsp: ENST00000602122.1:c.675C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000470630
  ensembl transcript: ENST00000599658
  gene symbol: LSR
  hgvsc: ENST00000599658.1:c.174C>T
  hgvsp: ENST00000599658.1:c.174C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472154
  ensembl transcript: ENST00000601623
  gene symbol: LSR
  hgvsc: ENST00000601623.1:c.453C>T
  hgvsp: ENST00000601623.1:c.453C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000597933
  gene symbol: LSR
  hgvsc: ENST00000597933.1:n.595C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354575
  ensembl transcript: ENST00000361790
  gene symbol: LSR
  hgvsc: ENST00000361790.3:c.675C>T
  hgvsp: ENST00000361790.3:c.675C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000394479
  ensembl transcript: ENST00000427250
  gene symbol: LSR
  hgvsc: ENST00000427250.1:c.455-7338C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000474797
  ensembl transcript: ENST00000605618
  gene symbol: LSR
  hgvsc: ENST00000605618.1:c.476-7338C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000262627
  ensembl transcript: ENST00000347609
  gene symbol: LSR
  hgvsc: ENST00000347609.4:c.564C>T
  hgvsp: ENST00000347609.4:c.564C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000602044
  gene symbol: LSR
  hgvsc: ENST00000602044.1:n.444C>T
  variant of: http://identifiers.org/hgnc/29572
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1295
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4178
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3093
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1831
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10282
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4556
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9755
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7796
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8677
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6247
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp225Asp
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

19-35749925-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35749925
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 35749925
    reference: chr 19
allele count: 1
allele frequency: 8.255047961828658e-6
allele num: 121138
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000602044
  gene symbol: LSR
  hgvsc: ENST00000602044.1:n.445C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000470630
  ensembl transcript: ENST00000599658
  gene symbol: LSR
  hgvsc: ENST00000599658.1:c.175C>T
  hgvsp: ENSP00000470630.1:p.Leu59Phe
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354034
  ensembl transcript: ENST00000360798
  gene symbol: LSR
  hgvsc: ENST00000360798.3:c.676C>T
  hgvsp: ENSP00000354034.2:p.Leu226Phe
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000346976
  ensembl transcript: ENST00000354900
  gene symbol: LSR
  hgvsc: ENST00000354900.3:c.676C>T
  hgvsp: ENSP00000346976.2:p.Leu226Phe
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472569
  ensembl transcript: ENST00000602122
  gene symbol: LSR
  hgvsc: ENST00000602122.1:c.676C>T
  hgvsp: ENSP00000472569.1:p.Leu226Phe
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354575
  ensembl transcript: ENST00000361790
  gene symbol: LSR
  hgvsc: ENST00000361790.3:c.676C>T
  hgvsp: ENSP00000354575.2:p.Leu226Phe
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000394479
  ensembl transcript: ENST00000427250
  gene symbol: LSR
  hgvsc: ENST00000427250.1:c.455-7337C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000262627
  ensembl transcript: ENST00000347609
  gene symbol: LSR
  hgvsc: ENST00000347609.4:c.565C>T
  hgvsp: ENSP00000262627.3:p.Leu189Phe
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000474797
  ensembl transcript: ENST00000605618
  gene symbol: LSR
  hgvsc: ENST00000605618.1:c.476-7337C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000597933
  gene symbol: LSR
  hgvsc: ENST00000597933.1:n.596C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472154
  ensembl transcript: ENST00000601623
  gene symbol: LSR
  hgvsc: ENST00000601623.1:c.454C>T
  hgvsp: ENSP00000472154.2:p.Leu152Phe
  variant of: http://identifiers.org/hgnc/29572
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1294
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10275
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4185
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8673
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4557
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9749
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6249
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3093
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7798
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1832
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu226Phe
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

19-35749928-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35749928
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 35749928
    reference: chr 19
allele count: 1
allele frequency: 8.256274768824306e-6
allele num: 121120
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354034
  ensembl transcript: ENST00000360798
  gene symbol: LSR
  hgvsc: ENST00000360798.3:c.679C>T
  hgvsp: ENSP00000354034.2:p.Gln227Ter
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000262627
  ensembl transcript: ENST00000347609
  gene symbol: LSR
  hgvsc: ENST00000347609.4:c.568C>T
  hgvsp: ENSP00000262627.3:p.Gln190Ter
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472569
  ensembl transcript: ENST00000602122
  gene symbol: LSR
  hgvsc: ENST00000602122.1:c.679C>T
  hgvsp: ENSP00000472569.1:p.Gln227Ter
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000474797
  ensembl transcript: ENST00000605618
  gene symbol: LSR
  hgvsc: ENST00000605618.1:c.476-7334C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000346976
  ensembl transcript: ENST00000354900
  gene symbol: LSR
  hgvsc: ENST00000354900.3:c.679C>T
  hgvsp: ENSP00000346976.2:p.Gln227Ter
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000394479
  ensembl transcript: ENST00000427250
  gene symbol: LSR
  hgvsc: ENST00000427250.1:c.455-7334C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354575
  ensembl transcript: ENST00000361790
  gene symbol: LSR
  hgvsc: ENST00000361790.3:c.679C>T
  hgvsp: ENSP00000354575.2:p.Gln227Ter
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472154
  ensembl transcript: ENST00000601623
  gene symbol: LSR
  hgvsc: ENST00000601623.1:c.457C>T
  hgvsp: ENSP00000472154.2:p.Gln153Ter
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000470630
  ensembl transcript: ENST00000599658
  gene symbol: LSR
  hgvsc: ENST00000599658.1:c.178C>T
  hgvsp: ENSP00000470630.1:p.Gln60Ter
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000597933
  gene symbol: LSR
  hgvsc: ENST00000597933.1:n.599C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000602044
  gene symbol: LSR
  hgvsc: ENST00000602044.1:n.448C>T
  variant of: http://identifiers.org/hgnc/29572
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3094
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4172
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8668
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6247
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9737
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4557
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10272
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1294
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1833
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7798
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln227Ter
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: African
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP

19-35749935-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35749935
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 35749935
    reference: chr 19
allele count: 1
allele frequency: 8.260639703938672e-6
allele num: 121056
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000597933
  gene symbol: LSR
  hgvsc: ENST00000597933.1:n.606A>G
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000346976
  ensembl transcript: ENST00000354900
  gene symbol: LSR
  hgvsc: ENST00000354900.3:c.686A>G
  hgvsp: ENSP00000346976.2:p.Asn229Ser
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000602044
  gene symbol: LSR
  hgvsc: ENST00000602044.1:n.455A>G
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354034
  ensembl transcript: ENST00000360798
  gene symbol: LSR
  hgvsc: ENST00000360798.3:c.686A>G
  hgvsp: ENSP00000354034.2:p.Asn229Ser
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000474797
  ensembl transcript: ENST00000605618
  gene symbol: LSR
  hgvsc: ENST00000605618.1:c.476-7327A>G
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472154
  ensembl transcript: ENST00000601623
  gene symbol: LSR
  hgvsc: ENST00000601623.1:c.464A>G
  hgvsp: ENSP00000472154.2:p.Asn155Ser
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000470630
  ensembl transcript: ENST00000599658
  gene symbol: LSR
  hgvsc: ENST00000599658.1:c.185A>G
  hgvsp: ENSP00000470630.1:p.Asn62Ser
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472569
  ensembl transcript: ENST00000602122
  gene symbol: LSR
  hgvsc: ENST00000602122.1:c.686A>G
  hgvsp: ENSP00000472569.1:p.Asn229Ser
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000262627
  ensembl transcript: ENST00000347609
  gene symbol: LSR
  hgvsc: ENST00000347609.4:c.575A>G
  hgvsp: ENSP00000262627.3:p.Asn192Ser
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000394479
  ensembl transcript: ENST00000427250
  gene symbol: LSR
  hgvsc: ENST00000427250.1:c.455-7327A>G
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354575
  ensembl transcript: ENST00000361790
  gene symbol: LSR
  hgvsc: ENST00000361790.3:c.686A>G
  hgvsp: ENSP00000354575.2:p.Asn229Ser
  variant of: http://identifiers.org/hgnc/29572
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8662
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10246
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4557
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6245
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4155
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9707
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1294
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1832
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3094
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7793
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn229Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: Other
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP

19-35749939-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35749939
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 35749939
    reference: chr 19
allele count: 1
allele frequency: 8.263370132874991e-6
allele num: 121016
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472569
  ensembl transcript: ENST00000602122
  gene symbol: LSR
  hgvsc: ENST00000602122.1:c.690T>C
  hgvsp: ENST00000602122.1:c.690T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000474797
  ensembl transcript: ENST00000605618
  gene symbol: LSR
  hgvsc: ENST00000605618.1:c.476-7323T>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000597933
  gene symbol: LSR
  hgvsc: ENST00000597933.1:n.610T>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000262627
  ensembl transcript: ENST00000347609
  gene symbol: LSR
  hgvsc: ENST00000347609.4:c.579T>C
  hgvsp: ENST00000347609.4:c.579T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000470630
  ensembl transcript: ENST00000599658
  gene symbol: LSR
  hgvsc: ENST00000599658.1:c.189T>C
  hgvsp: ENST00000599658.1:c.189T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354575
  ensembl transcript: ENST00000361790
  gene symbol: LSR
  hgvsc: ENST00000361790.3:c.690T>C
  hgvsp: ENST00000361790.3:c.690T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354034
  ensembl transcript: ENST00000360798
  gene symbol: LSR
  hgvsc: ENST00000360798.3:c.690T>C
  hgvsp: ENST00000360798.3:c.690T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000602044
  gene symbol: LSR
  hgvsc: ENST00000602044.1:n.459T>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472154
  ensembl transcript: ENST00000601623
  gene symbol: LSR
  hgvsc: ENST00000601623.1:c.468T>C
  hgvsp: ENST00000601623.1:c.468T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000346976
  ensembl transcript: ENST00000354900
  gene symbol: LSR
  hgvsc: ENST00000354900.3:c.690T>C
  hgvsp: ENST00000354900.3:c.690T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000394479
  ensembl transcript: ENST00000427250
  gene symbol: LSR
  hgvsc: ENST00000427250.1:c.455-7323T>C
  variant of: http://identifiers.org/hgnc/29572
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10188
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1294
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1832
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4556
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8657
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7791
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3095
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6247
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9682
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4129
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn230Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
reference allele: T
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ

19-35749945-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35749945
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 35749945
    reference: chr 19
allele count: 1
allele frequency: 8.275953389830508e-6
allele num: 120832
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354575
  ensembl transcript: ENST00000361790
  gene symbol: LSR
  hgvsc: ENST00000361790.3:c.696C>T
  hgvsp: ENST00000361790.3:c.696C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000602044
  gene symbol: LSR
  hgvsc: ENST00000602044.1:n.465C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000346976
  ensembl transcript: ENST00000354900
  gene symbol: LSR
  hgvsc: ENST00000354900.3:c.696C>T
  hgvsp: ENST00000354900.3:c.696C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000474797
  ensembl transcript: ENST00000605618
  gene symbol: LSR
  hgvsc: ENST00000605618.1:c.476-7317C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000470630
  ensembl transcript: ENST00000599658
  gene symbol: LSR
  hgvsc: ENST00000599658.1:c.195C>T
  hgvsp: ENST00000599658.1:c.195C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472569
  ensembl transcript: ENST00000602122
  gene symbol: LSR
  hgvsc: ENST00000602122.1:c.696C>T
  hgvsp: ENST00000602122.1:c.696C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472154
  ensembl transcript: ENST00000601623
  gene symbol: LSR
  hgvsc: ENST00000601623.1:c.474C>T
  hgvsp: ENST00000601623.1:c.474C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000262627
  ensembl transcript: ENST00000347609
  gene symbol: LSR
  hgvsc: ENST00000347609.4:c.585C>T
  hgvsp: ENST00000347609.4:c.585C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000597933
  gene symbol: LSR
  hgvsc: ENST00000597933.1:n.616C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354034
  ensembl transcript: ENST00000360798
  gene symbol: LSR
  hgvsc: ENST00000360798.3:c.696C>T
  hgvsp: ENST00000360798.3:c.696C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000394479
  ensembl transcript: ENST00000427250
  gene symbol: LSR
  hgvsc: ENST00000427250.1:c.455-7317C>T
  variant of: http://identifiers.org/hgnc/29572
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4134
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9581
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4556
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1294
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10046
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6242
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8628
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1831
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7783
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3094
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala232Ala
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

19-35749948-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35749948
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 35749948
    reference: chr 19
allele count: 20
allele frequency: 1.655711376392867e-4
allele num: 120794
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000262627
  ensembl transcript: ENST00000347609
  gene symbol: LSR
  hgvsc: ENST00000347609.4:c.588C>T
  hgvsp: ENST00000347609.4:c.588C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000470630
  ensembl transcript: ENST00000599658
  gene symbol: LSR
  hgvsc: ENST00000599658.1:c.198C>T
  hgvsp: ENST00000599658.1:c.198C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000602044
  gene symbol: LSR
  hgvsc: ENST00000602044.1:n.468C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472569
  ensembl transcript: ENST00000602122
  gene symbol: LSR
  hgvsc: ENST00000602122.1:c.699C>T
  hgvsp: ENST00000602122.1:c.699C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000474797
  ensembl transcript: ENST00000605618
  gene symbol: LSR
  hgvsc: ENST00000605618.1:c.476-7314C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472154
  ensembl transcript: ENST00000601623
  gene symbol: LSR
  hgvsc: ENST00000601623.1:c.477C>T
  hgvsp: ENST00000601623.1:c.477C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354575
  ensembl transcript: ENST00000361790
  gene symbol: LSR
  hgvsc: ENST00000361790.3:c.699C>T
  hgvsp: ENST00000361790.3:c.699C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000346976
  ensembl transcript: ENST00000354900
  gene symbol: LSR
  hgvsc: ENST00000354900.3:c.699C>T
  hgvsp: ENST00000354900.3:c.699C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354034
  ensembl transcript: ENST00000360798
  gene symbol: LSR
  hgvsc: ENST00000360798.3:c.699C>T
  hgvsp: ENST00000360798.3:c.699C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000597933
  gene symbol: LSR
  hgvsc: ENST00000597933.1:n.619C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000394479
  ensembl transcript: ENST00000427250
  gene symbol: LSR
  hgvsc: ENST00000427250.1:c.455-7314C>T
  variant of: http://identifiers.org/hgnc/29572
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8626
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1830
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4556
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6243
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9548
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7778
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4160
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10005
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1295
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3095
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Tyr233Tyr
num of homozygotes: 1
population: Other
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

19-35749949-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35749949
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 35749949
    reference: chr 19
allele count: 1
allele frequency: 8.280887711162637e-6
allele num: 120760
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000262627
  ensembl transcript: ENST00000347609
  gene symbol: LSR
  hgvsc: ENST00000347609.4:c.589G>A
  hgvsp: ENSP00000262627.3:p.Ala197Thr
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354034
  ensembl transcript: ENST00000360798
  gene symbol: LSR
  hgvsc: ENST00000360798.3:c.700G>A
  hgvsp: ENSP00000354034.2:p.Ala234Thr
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472154
  ensembl transcript: ENST00000601623
  gene symbol: LSR
  hgvsc: ENST00000601623.1:c.478G>A
  hgvsp: ENSP00000472154.2:p.Ala160Thr
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472569
  ensembl transcript: ENST00000602122
  gene symbol: LSR
  hgvsc: ENST00000602122.1:c.700G>A
  hgvsp: ENSP00000472569.1:p.Ala234Thr
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000346976
  ensembl transcript: ENST00000354900
  gene symbol: LSR
  hgvsc: ENST00000354900.3:c.700G>A
  hgvsp: ENSP00000346976.2:p.Ala234Thr
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000602044
  gene symbol: LSR
  hgvsc: ENST00000602044.1:n.469G>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000394479
  ensembl transcript: ENST00000427250
  gene symbol: LSR
  hgvsc: ENST00000427250.1:c.455-7313G>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000470630
  ensembl transcript: ENST00000599658
  gene symbol: LSR
  hgvsc: ENST00000599658.1:c.199G>A
  hgvsp: ENSP00000470630.1:p.Ala67Thr
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000474797
  ensembl transcript: ENST00000605618
  gene symbol: LSR
  hgvsc: ENST00000605618.1:c.476-7313G>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354575
  ensembl transcript: ENST00000361790
  gene symbol: LSR
  hgvsc: ENST00000361790.3:c.700G>A
  hgvsp: ENSP00000354575.2:p.Ala234Thr
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000597933
  gene symbol: LSR
  hgvsc: ENST00000597933.1:n.620G>A
  variant of: http://identifiers.org/hgnc/29572
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9968
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9520
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8621
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4557
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3097
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7779
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4185
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1831
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6240
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1294
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala234Thr
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

19-35749951-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35749951
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 35749951
    reference: chr 19
allele count: 8
allele frequency: 6.633279161553514e-5
allele num: 120604
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354575
  ensembl transcript: ENST00000361790
  gene symbol: LSR
  hgvsc: ENST00000361790.3:c.702A>G
  hgvsp: ENST00000361790.3:c.702A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354034
  ensembl transcript: ENST00000360798
  gene symbol: LSR
  hgvsc: ENST00000360798.3:c.702A>G
  hgvsp: ENST00000360798.3:c.702A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000346976
  ensembl transcript: ENST00000354900
  gene symbol: LSR
  hgvsc: ENST00000354900.3:c.702A>G
  hgvsp: ENST00000354900.3:c.702A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000394479
  ensembl transcript: ENST00000427250
  gene symbol: LSR
  hgvsc: ENST00000427250.1:c.455-7311A>G
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000262627
  ensembl transcript: ENST00000347609
  gene symbol: LSR
  hgvsc: ENST00000347609.4:c.591A>G
  hgvsp: ENST00000347609.4:c.591A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472569
  ensembl transcript: ENST00000602122
  gene symbol: LSR
  hgvsc: ENST00000602122.1:c.702A>G
  hgvsp: ENST00000602122.1:c.702A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000474797
  ensembl transcript: ENST00000605618
  gene symbol: LSR
  hgvsc: ENST00000605618.1:c.476-7311A>G
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000470630
  ensembl transcript: ENST00000599658
  gene symbol: LSR
  hgvsc: ENST00000599658.1:c.201A>G
  hgvsp: ENST00000599658.1:c.201A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472154
  ensembl transcript: ENST00000601623
  gene symbol: LSR
  hgvsc: ENST00000601623.1:c.480A>G
  hgvsp: ENST00000601623.1:c.480A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000597933
  gene symbol: LSR
  hgvsc: ENST00000597933.1:n.622A>G
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000602044
  gene symbol: LSR
  hgvsc: ENST00000602044.1:n.471A>G
  variant of: http://identifiers.org/hgnc/29572
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8596
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4556
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6239
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4204
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1832
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9436
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9865
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3097
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7776
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1293
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala234Ala
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

19-35749954-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35749954
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 35749954
    reference: chr 19
allele count: 1
allele frequency: 8.300546175938376e-6
allele num: 120474
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000474797
  ensembl transcript: ENST00000605618
  gene symbol: LSR
  hgvsc: ENST00000605618.1:c.476-7308G>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354034
  ensembl transcript: ENST00000360798
  gene symbol: LSR
  hgvsc: ENST00000360798.3:c.705G>A
  hgvsp: ENST00000360798.3:c.705G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000346976
  ensembl transcript: ENST00000354900
  gene symbol: LSR
  hgvsc: ENST00000354900.3:c.705G>A
  hgvsp: ENST00000354900.3:c.705G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472154
  ensembl transcript: ENST00000601623
  gene symbol: LSR
  hgvsc: ENST00000601623.1:c.483G>A
  hgvsp: ENST00000601623.1:c.483G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000470630
  ensembl transcript: ENST00000599658
  gene symbol: LSR
  hgvsc: ENST00000599658.1:c.204G>A
  hgvsp: ENST00000599658.1:c.204G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472569
  ensembl transcript: ENST00000602122
  gene symbol: LSR
  hgvsc: ENST00000602122.1:c.705G>A
  hgvsp: ENST00000602122.1:c.705G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000597933
  gene symbol: LSR
  hgvsc: ENST00000597933.1:n.625G>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000394479
  ensembl transcript: ENST00000427250
  gene symbol: LSR
  hgvsc: ENST00000427250.1:c.455-7308G>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354575
  ensembl transcript: ENST00000361790
  gene symbol: LSR
  hgvsc: ENST00000361790.3:c.705G>A
  hgvsp: ENST00000361790.3:c.705G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000262627
  ensembl transcript: ENST00000347609
  gene symbol: LSR
  hgvsc: ENST00000347609.4:c.594G>A
  hgvsp: ENST00000347609.4:c.594G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000602044
  gene symbol: LSR
  hgvsc: ENST00000602044.1:n.474G>A
  variant of: http://identifiers.org/hgnc/29572
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4555
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9746
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8596
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4189
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9394
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6237
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7776
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1831
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3096
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1293
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Glu235Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: DP

19-35749960-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35749960
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 35749960
    reference: chr 19
allele count: 7
allele frequency: 5.822755327821125e-5
allele num: 120218
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000394479
  ensembl transcript: ENST00000427250
  gene symbol: LSR
  hgvsc: ENST00000427250.1:c.455-7302C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000346976
  ensembl transcript: ENST00000354900
  gene symbol: LSR
  hgvsc: ENST00000354900.3:c.711C>T
  hgvsp: ENST00000354900.3:c.711C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472154
  ensembl transcript: ENST00000601623
  gene symbol: LSR
  hgvsc: ENST00000601623.1:c.489C>T
  hgvsp: ENST00000601623.1:c.489C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000262627
  ensembl transcript: ENST00000347609
  gene symbol: LSR
  hgvsc: ENST00000347609.4:c.600C>T
  hgvsp: ENST00000347609.4:c.600C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354034
  ensembl transcript: ENST00000360798
  gene symbol: LSR
  hgvsc: ENST00000360798.3:c.711C>T
  hgvsp: ENST00000360798.3:c.711C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354575
  ensembl transcript: ENST00000361790
  gene symbol: LSR
  hgvsc: ENST00000361790.3:c.711C>T
  hgvsp: ENST00000361790.3:c.711C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472569
  ensembl transcript: ENST00000602122
  gene symbol: LSR
  hgvsc: ENST00000602122.1:c.711C>T
  hgvsp: ENST00000602122.1:c.711C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000470630
  ensembl transcript: ENST00000599658
  gene symbol: LSR
  hgvsc: ENST00000599658.1:c.210C>T
  hgvsp: ENST00000599658.1:c.210C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000602044
  gene symbol: LSR
  hgvsc: ENST00000602044.1:n.480C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000474797
  ensembl transcript: ENST00000605618
  gene symbol: LSR
  hgvsc: ENST00000605618.1:c.476-7302C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000597933
  gene symbol: LSR
  hgvsc: ENST00000597933.1:n.631C>T
  variant of: http://identifiers.org/hgnc/29572
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9213
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4219
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3096
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8580
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1294
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9493
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1830
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6237
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4555
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7770
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: p.Ile237Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: South Asian
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

19-35749961-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35749961
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 35749961
    reference: chr 19
allele count: 6
allele frequency: 4.993425323324289e-5
allele num: 120158
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354034
  ensembl transcript: ENST00000360798
  gene symbol: LSR
  hgvsc: ENST00000360798.3:c.712G>A
  hgvsp: ENSP00000354034.2:p.Val238Ile
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000602044
  gene symbol: LSR
  hgvsc: ENST00000602044.1:n.481G>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000346976
  ensembl transcript: ENST00000354900
  gene symbol: LSR
  hgvsc: ENST00000354900.3:c.712G>A
  hgvsp: ENSP00000346976.2:p.Val238Ile
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000394479
  ensembl transcript: ENST00000427250
  gene symbol: LSR
  hgvsc: ENST00000427250.1:c.455-7301G>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472154
  ensembl transcript: ENST00000601623
  gene symbol: LSR
  hgvsc: ENST00000601623.1:c.490G>A
  hgvsp: ENSP00000472154.2:p.Val164Ile
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000597933
  gene symbol: LSR
  hgvsc: ENST00000597933.1:n.632G>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000262627
  ensembl transcript: ENST00000347609
  gene symbol: LSR
  hgvsc: ENST00000347609.4:c.601G>A
  hgvsp: ENSP00000262627.3:p.Val201Ile
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354575
  ensembl transcript: ENST00000361790
  gene symbol: LSR
  hgvsc: ENST00000361790.3:c.712G>A
  hgvsp: ENSP00000354575.2:p.Val238Ile
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472569
  ensembl transcript: ENST00000602122
  gene symbol: LSR
  hgvsc: ENST00000602122.1:c.712G>A
  hgvsp: ENSP00000472569.1:p.Val238Ile
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000470630
  ensembl transcript: ENST00000599658
  gene symbol: LSR
  hgvsc: ENST00000599658.1:c.211G>A
  hgvsp: ENSP00000470630.1:p.Val71Ile
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000474797
  ensembl transcript: ENST00000605618
  gene symbol: LSR
  hgvsc: ENST00000605618.1:c.476-7301G>A
  variant of: http://identifiers.org/hgnc/29572
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6241
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4554
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1293
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3095
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4260
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9450
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1829
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7767
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8573
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9154
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Val238Ile
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

19-35749964-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35749964
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 35749964
    reference: chr 19
allele count: 33
allele frequency: 2.750320870768257e-4
allele num: 119986
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000470630
  ensembl transcript: ENST00000599658
  gene symbol: LSR
  hgvsc: ENST00000599658.1:c.214C>T
  hgvsp: ENSP00000470630.1:p.Leu72Phe
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354575
  ensembl transcript: ENST00000361790
  gene symbol: LSR
  hgvsc: ENST00000361790.3:c.715C>T
  hgvsp: ENSP00000354575.2:p.Leu239Phe
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000597933
  gene symbol: LSR
  hgvsc: ENST00000597933.1:n.635C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000474797
  ensembl transcript: ENST00000605618
  gene symbol: LSR
  hgvsc: ENST00000605618.1:c.476-7298C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472569
  ensembl transcript: ENST00000602122
  gene symbol: LSR
  hgvsc: ENST00000602122.1:c.715C>T
  hgvsp: ENSP00000472569.1:p.Leu239Phe
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000346976
  ensembl transcript: ENST00000354900
  gene symbol: LSR
  hgvsc: ENST00000354900.3:c.715C>T
  hgvsp: ENSP00000346976.2:p.Leu239Phe
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000262627
  ensembl transcript: ENST00000347609
  gene symbol: LSR
  hgvsc: ENST00000347609.4:c.604C>T
  hgvsp: ENSP00000262627.3:p.Leu202Phe
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472154
  ensembl transcript: ENST00000601623
  gene symbol: LSR
  hgvsc: ENST00000601623.1:c.493C>T
  hgvsp: ENSP00000472154.2:p.Leu165Phe
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354034
  ensembl transcript: ENST00000360798
  gene symbol: LSR
  hgvsc: ENST00000360798.3:c.715C>T
  hgvsp: ENSP00000354034.2:p.Leu239Phe
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000394479
  ensembl transcript: ENST00000427250
  gene symbol: LSR
  hgvsc: ENST00000427250.1:c.455-7298C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000602044
  gene symbol: LSR
  hgvsc: ENST00000602044.1:n.484C>T
  variant of: http://identifiers.org/hgnc/29572
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9082
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9340
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6240
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4230
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8568
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7768
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1294
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4553
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1830
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3094
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu239Phe
num of homozygotes: 1
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: African
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

19-35749965-TTGG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35749965
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 35749962
    reference: chr 19
allele count: 1
allele frequency: 8.337780149413021e-6
allele num: 119936
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000394479
  ensembl transcript: ENST00000427250
  gene symbol: LSR
  hgvsc: ENST00000427250.1:c.455-7294_455-7292delGTG
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000602044
  gene symbol: LSR
  hgvsc: ENST00000602044.1:n.487+1_487+3delGTG
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354575
  ensembl transcript: ENST00000361790
  gene symbol: LSR
  hgvsc: ENST00000361790.3:c.718+1_718+3delGTG
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000470630
  ensembl transcript: ENST00000599658
  gene symbol: LSR
  hgvsc: ENST00000599658.1:c.217+1_217+3delGTG
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000262627
  ensembl transcript: ENST00000347609
  gene symbol: LSR
  hgvsc: ENST00000347609.4:c.607+1_607+3delGTG
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000346976
  ensembl transcript: ENST00000354900
  gene symbol: LSR
  hgvsc: ENST00000354900.3:c.718+1_718+3delGTG
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000474797
  ensembl transcript: ENST00000605618
  gene symbol: LSR
  hgvsc: ENST00000605618.1:c.476-7294_476-7292delGTG
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472569
  ensembl transcript: ENST00000602122
  gene symbol: LSR
  hgvsc: ENST00000602122.1:c.718+1_718+3delGTG
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354034
  ensembl transcript: ENST00000360798
  gene symbol: LSR
  hgvsc: ENST00000360798.3:c.718+1_718+3delGTG
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472154
  ensembl transcript: ENST00000601623
  gene symbol: LSR
  hgvsc: ENST00000601623.1:c.496+1_496+3delGTG
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000597933
  gene symbol: LSR
  hgvsc: ENST00000597933.1:n.638+1_638+3delGTG
  variant of: http://identifiers.org/hgnc/29572
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8561
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9059
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1829
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3093
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4222
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7767
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6240
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4552
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9296
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.718+1_718+3delGTG
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: African
population: East Asian
reference allele: TTGG
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: DP

19-35749972-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35749972
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 35749972
    reference: chr 19
allele count: 1
allele frequency: 8.368621018628551e-6
allele num: 119494
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000602044
  gene symbol: LSR
  hgvsc: ENST00000602044.1:n.487+5G>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000597933
  gene symbol: LSR
  hgvsc: ENST00000597933.1:n.638+5G>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000474797
  ensembl transcript: ENST00000605618
  gene symbol: LSR
  hgvsc: ENST00000605618.1:c.476-7290G>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472569
  ensembl transcript: ENST00000602122
  gene symbol: LSR
  hgvsc: ENST00000602122.1:c.718+5G>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000262627
  ensembl transcript: ENST00000347609
  gene symbol: LSR
  hgvsc: ENST00000347609.4:c.607+5G>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354575
  ensembl transcript: ENST00000361790
  gene symbol: LSR
  hgvsc: ENST00000361790.3:c.718+5G>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000346976
  ensembl transcript: ENST00000354900
  gene symbol: LSR
  hgvsc: ENST00000354900.3:c.718+5G>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354034
  ensembl transcript: ENST00000360798
  gene symbol: LSR
  hgvsc: ENST00000360798.3:c.718+5G>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472154
  ensembl transcript: ENST00000601623
  gene symbol: LSR
  hgvsc: ENST00000601623.1:c.496+5G>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000394479
  ensembl transcript: ENST00000427250
  gene symbol: LSR
  hgvsc: ENST00000427250.1:c.455-7290G>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000470630
  ensembl transcript: ENST00000599658
  gene symbol: LSR
  hgvsc: ENST00000599658.1:c.217+5G>C
  variant of: http://identifiers.org/hgnc/29572
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1830
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1788
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6239
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7765
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8908
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3092
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8557
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8725
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3932
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4552
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.718+5G>C
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum

19-35749974-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35749974
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 35749974
    reference: chr 19
allele count: 4
allele frequency: 3.34929832200154e-5
allele num: 119428
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000394479
  ensembl transcript: ENST00000427250
  gene symbol: LSR
  hgvsc: ENST00000427250.1:c.455-7288G>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354034
  ensembl transcript: ENST00000360798
  gene symbol: LSR
  hgvsc: ENST00000360798.3:c.718+7G>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472154
  ensembl transcript: ENST00000601623
  gene symbol: LSR
  hgvsc: ENST00000601623.1:c.496+7G>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354575
  ensembl transcript: ENST00000361790
  gene symbol: LSR
  hgvsc: ENST00000361790.3:c.718+7G>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000602044
  gene symbol: LSR
  hgvsc: ENST00000602044.1:n.487+7G>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000470630
  ensembl transcript: ENST00000599658
  gene symbol: LSR
  hgvsc: ENST00000599658.1:c.217+7G>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472569
  ensembl transcript: ENST00000602122
  gene symbol: LSR
  hgvsc: ENST00000602122.1:c.718+7G>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000474797
  ensembl transcript: ENST00000605618
  gene symbol: LSR
  hgvsc: ENST00000605618.1:c.476-7288G>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000597933
  gene symbol: LSR
  hgvsc: ENST00000597933.1:n.638+7G>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000262627
  ensembl transcript: ENST00000347609
  gene symbol: LSR
  hgvsc: ENST00000347609.4:c.607+7G>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000346976
  ensembl transcript: ENST00000354900
  gene symbol: LSR
  hgvsc: ENST00000354900.3:c.718+7G>A
  variant of: http://identifiers.org/hgnc/29572
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4554
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1870
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3885
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8664
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8877
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1831
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6237
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8557
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7764
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3090
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.718+7G>A
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQ

19-35749980-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35749980
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 35749980
    reference: chr 19
allele count: 1
allele frequency: 8.410428931875526e-6
allele num: 118900
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472154
  ensembl transcript: ENST00000601623
  gene symbol: LSR
  hgvsc: ENST00000601623.1:c.496+13G>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472569
  ensembl transcript: ENST00000602122
  gene symbol: LSR
  hgvsc: ENST00000602122.1:c.718+13G>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000394479
  ensembl transcript: ENST00000427250
  gene symbol: LSR
  hgvsc: ENST00000427250.1:c.455-7282G>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000262627
  ensembl transcript: ENST00000347609
  gene symbol: LSR
  hgvsc: ENST00000347609.4:c.607+13G>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000602044
  gene symbol: LSR
  hgvsc: ENST00000602044.1:n.487+13G>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000346976
  ensembl transcript: ENST00000354900
  gene symbol: LSR
  hgvsc: ENST00000354900.3:c.718+13G>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000474797
  ensembl transcript: ENST00000605618
  gene symbol: LSR
  hgvsc: ENST00000605618.1:c.476-7282G>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354034
  ensembl transcript: ENST00000360798
  gene symbol: LSR
  hgvsc: ENST00000360798.3:c.718+13G>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000597933
  gene symbol: LSR
  hgvsc: ENST00000597933.1:n.638+13G>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000470630
  ensembl transcript: ENST00000599658
  gene symbol: LSR
  hgvsc: ENST00000599658.1:c.217+13G>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354575
  ensembl transcript: ENST00000361790
  gene symbol: LSR
  hgvsc: ENST00000361790.3:c.718+13G>C
  variant of: http://identifiers.org/hgnc/29572
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8087
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8548
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6235
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2507
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8698
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3091
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1829
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3560
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4552
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7764
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: QD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum

19-35749984-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35749984
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 35749983
    reference: chr 19
allele count: 5
allele frequency: 4.213293784549009e-5
allele num: 118672
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472569
  ensembl transcript: ENST00000602122
  gene symbol: LSR
  hgvsc: ENST00000602122.1:c.718+22delG
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000394479
  ensembl transcript: ENST00000427250
  gene symbol: LSR
  hgvsc: ENST00000427250.1:c.455-7273delG
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000346976
  ensembl transcript: ENST00000354900
  gene symbol: LSR
  hgvsc: ENST00000354900.3:c.718+22delG
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000262627
  ensembl transcript: ENST00000347609
  gene symbol: LSR
  hgvsc: ENST00000347609.4:c.607+22delG
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354034
  ensembl transcript: ENST00000360798
  gene symbol: LSR
  hgvsc: ENST00000360798.3:c.718+22delG
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000474797
  ensembl transcript: ENST00000605618
  gene symbol: LSR
  hgvsc: ENST00000605618.1:c.476-7273delG
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472154
  ensembl transcript: ENST00000601623
  gene symbol: LSR
  hgvsc: ENST00000601623.1:c.496+22delG
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000602044
  gene symbol: LSR
  hgvsc: ENST00000602044.1:n.487+22delG
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000597933
  gene symbol: LSR
  hgvsc: ENST00000597933.1:n.638+22delG
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000470630
  ensembl transcript: ENST00000599658
  gene symbol: LSR
  hgvsc: ENST00000599658.1:c.217+22delG
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354575
  ensembl transcript: ENST00000361790
  gene symbol: LSR
  hgvsc: ENST00000361790.3:c.718+22delG
  variant of: http://identifiers.org/hgnc/29572
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7753
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3091
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6234
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3396
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8613
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8530
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1830
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4553
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7758
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2863
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 747
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: AG
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD

19-35749992-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35749992
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 35749992
    reference: chr 19
allele count: 1
allele frequency: 8.460093737838614e-6
allele num: 118202
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000470630
  ensembl transcript: ENST00000599658
  gene symbol: LSR
  hgvsc: ENST00000599658.1:c.217+25G>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000474797
  ensembl transcript: ENST00000605618
  gene symbol: LSR
  hgvsc: ENST00000605618.1:c.476-7270G>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354575
  ensembl transcript: ENST00000361790
  gene symbol: LSR
  hgvsc: ENST00000361790.3:c.718+25G>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000597933
  gene symbol: LSR
  hgvsc: ENST00000597933.1:n.638+25G>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000394479
  ensembl transcript: ENST00000427250
  gene symbol: LSR
  hgvsc: ENST00000427250.1:c.455-7270G>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354034
  ensembl transcript: ENST00000360798
  gene symbol: LSR
  hgvsc: ENST00000360798.3:c.718+25G>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472154
  ensembl transcript: ENST00000601623
  gene symbol: LSR
  hgvsc: ENST00000601623.1:c.496+25G>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472569
  ensembl transcript: ENST00000602122
  gene symbol: LSR
  hgvsc: ENST00000602122.1:c.718+25G>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000346976
  ensembl transcript: ENST00000354900
  gene symbol: LSR
  hgvsc: ENST00000354900.3:c.718+25G>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000602044
  gene symbol: LSR
  hgvsc: ENST00000602044.1:n.487+25G>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000262627
  ensembl transcript: ENST00000347609
  gene symbol: LSR
  hgvsc: ENST00000347609.4:c.607+25G>C
  variant of: http://identifiers.org/hgnc/29572
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3090
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3171
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1291
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8452
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3331
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7746
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8505
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7227
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6228
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1829
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4553
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2260
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: FS

http://identifiers.org/exac.variant/19-35749993-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35749993
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 35749993
    reference: chr 19
allele count: 24
allele frequency: 2.034036205844464e-4
allele num: 117992
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000602044
  gene symbol: LSR
  hgvsc: ENST00000602044.1:n.487+26C>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354034
  ensembl transcript: ENST00000360798
  gene symbol: LSR
  hgvsc: ENST00000360798.3:c.718+26C>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000394479
  ensembl transcript: ENST00000427250
  gene symbol: LSR
  hgvsc: ENST00000427250.1:c.455-7269C>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000597933
  gene symbol: LSR
  hgvsc: ENST00000597933.1:n.638+26C>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000474797
  ensembl transcript: ENST00000605618
  gene symbol: LSR
  hgvsc: ENST00000605618.1:c.476-7269C>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000346976
  ensembl transcript: ENST00000354900
  gene symbol: LSR
  hgvsc: ENST00000354900.3:c.718+26C>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000262627
  ensembl transcript: ENST00000347609
  gene symbol: LSR
  hgvsc: ENST00000347609.4:c.607+26C>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472154
  ensembl transcript: ENST00000601623
  gene symbol: LSR
  hgvsc: ENST00000601623.1:c.496+26C>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472569
  ensembl transcript: ENST00000602122
  gene symbol: LSR
  hgvsc: ENST00000602122.1:c.718+26C>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354575
  ensembl transcript: ENST00000361790
  gene symbol: LSR
  hgvsc: ENST00000361790.3:c.718+26C>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000470630
  ensembl transcript: ENST00000599658
  gene symbol: LSR
  hgvsc: ENST00000599658.1:c.217+26C>A
  variant of: http://identifiers.org/hgnc/29572
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3089
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7109
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1291
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8503
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3398
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1828
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7746
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3091
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8416
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4551
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6227
  bin: 4.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: DP

19-35750000-C-CTTCCTTTTGTCCGCTTCTG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35750000
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 35750019
    reference: chr 19
allele count: 2
allele frequency: 1.702272533832667e-5
allele num: 117490
alternate allele: CTTCCTTTTGTCCGCTTCTG
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000597933
  gene symbol: LSR
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000474797
  ensembl transcript: ENST00000605618
  gene symbol: LSR
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472569
  ensembl transcript: ENST00000602122
  gene symbol: LSR
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000394479
  ensembl transcript: ENST00000427250
  gene symbol: LSR
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354575
  ensembl transcript: ENST00000361790
  gene symbol: LSR
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354034
  ensembl transcript: ENST00000360798
  gene symbol: LSR
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472154
  ensembl transcript: ENST00000601623
  gene symbol: LSR
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000602044
  gene symbol: LSR
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000262627
  ensembl transcript: ENST00000347609
  gene symbol: LSR
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000346976
  ensembl transcript: ENST00000354900
  gene symbol: LSR
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000470630
  ensembl transcript: ENST00000599658
  gene symbol: LSR
  variant of: http://identifiers.org/hgnc/29572
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 1545
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8294
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2809
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6722
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1834
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3091
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1828
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6220
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3523
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4550
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7741
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1291
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8484
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7795
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP

19-35750005-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35750005
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 35750005
    reference: chr 19
allele count: 1
allele frequency: 8.559738414394057e-6
allele num: 116826
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000470630
  ensembl transcript: ENST00000599658
  gene symbol: LSR
  hgvsc: ENST00000599658.1:c.217+38T>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472154
  ensembl transcript: ENST00000601623
  gene symbol: LSR
  hgvsc: ENST00000601623.1:c.496+38T>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000262627
  ensembl transcript: ENST00000347609
  gene symbol: LSR
  hgvsc: ENST00000347609.4:c.607+38T>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000597933
  gene symbol: LSR
  hgvsc: ENST00000597933.1:n.638+38T>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354575
  ensembl transcript: ENST00000361790
  gene symbol: LSR
  hgvsc: ENST00000361790.3:c.718+38T>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000346976
  ensembl transcript: ENST00000354900
  gene symbol: LSR
  hgvsc: ENST00000354900.3:c.718+38T>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000474797
  ensembl transcript: ENST00000605618
  gene symbol: LSR
  hgvsc: ENST00000605618.1:c.476-7257T>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000394479
  ensembl transcript: ENST00000427250
  gene symbol: LSR
  hgvsc: ENST00000427250.1:c.455-7257T>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472569
  ensembl transcript: ENST00000602122
  gene symbol: LSR
  hgvsc: ENST00000602122.1:c.718+38T>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354034
  ensembl transcript: ENST00000360798
  gene symbol: LSR
  hgvsc: ENST00000360798.3:c.718+38T>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000602044
  gene symbol: LSR
  hgvsc: ENST00000602044.1:n.487+38T>C
  variant of: http://identifiers.org/hgnc/29572
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3340
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2718
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1828
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6333
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8142
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1801
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2383
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8461
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3090
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7734
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6218
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4548
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2413
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

19-35750007-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35750007
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 35750007
    reference: chr 19
allele count: 16
allele frequency: 1.368972244087751e-4
allele num: 116876
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000262627
  ensembl transcript: ENST00000347609
  gene symbol: LSR
  hgvsc: ENST00000347609.4:c.607+40T>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000394479
  ensembl transcript: ENST00000427250
  gene symbol: LSR
  hgvsc: ENST00000427250.1:c.455-7255T>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354034
  ensembl transcript: ENST00000360798
  gene symbol: LSR
  hgvsc: ENST00000360798.3:c.718+40T>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354575
  ensembl transcript: ENST00000361790
  gene symbol: LSR
  hgvsc: ENST00000361790.3:c.718+40T>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000346976
  ensembl transcript: ENST00000354900
  gene symbol: LSR
  hgvsc: ENST00000354900.3:c.718+40T>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472154
  ensembl transcript: ENST00000601623
  gene symbol: LSR
  hgvsc: ENST00000601623.1:c.496+40T>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000597933
  gene symbol: LSR
  hgvsc: ENST00000597933.1:n.638+40T>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472569
  ensembl transcript: ENST00000602122
  gene symbol: LSR
  hgvsc: ENST00000602122.1:c.718+40T>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000602044
  gene symbol: LSR
  hgvsc: ENST00000602044.1:n.487+40T>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000470630
  ensembl transcript: ENST00000599658
  gene symbol: LSR
  hgvsc: ENST00000599658.1:c.217+40T>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000474797
  ensembl transcript: ENST00000605618
  gene symbol: LSR
  hgvsc: ENST00000605618.1:c.476-7255T>C
  variant of: http://identifiers.org/hgnc/29572
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3358
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1829
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3090
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4547
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6217
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6334
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1817
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2755
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8111
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2343
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8456
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7733
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 323
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
reference allele: T
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD

19-35750010-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35750010
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 35750010
    reference: chr 19
allele count: 1
allele frequency: 8.592837011067574e-6
allele num: 116376
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000474797
  ensembl transcript: ENST00000605618
  gene symbol: LSR
  hgvsc: ENST00000605618.1:c.476-7252T>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000602044
  gene symbol: LSR
  hgvsc: ENST00000602044.1:n.487+43T>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000597933
  gene symbol: LSR
  hgvsc: ENST00000597933.1:n.638+43T>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472154
  ensembl transcript: ENST00000601623
  gene symbol: LSR
  hgvsc: ENST00000601623.1:c.496+43T>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354575
  ensembl transcript: ENST00000361790
  gene symbol: LSR
  hgvsc: ENST00000361790.3:c.718+43T>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000346976
  ensembl transcript: ENST00000354900
  gene symbol: LSR
  hgvsc: ENST00000354900.3:c.718+43T>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000262627
  ensembl transcript: ENST00000347609
  gene symbol: LSR
  hgvsc: ENST00000347609.4:c.607+43T>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000470630
  ensembl transcript: ENST00000599658
  gene symbol: LSR
  hgvsc: ENST00000599658.1:c.217+43T>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000394479
  ensembl transcript: ENST00000427250
  gene symbol: LSR
  hgvsc: ENST00000427250.1:c.455-7252T>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472569
  ensembl transcript: ENST00000602122
  gene symbol: LSR
  hgvsc: ENST00000602122.1:c.718+43T>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354034
  ensembl transcript: ENST00000360798
  gene symbol: LSR
  hgvsc: ENST00000360798.3:c.718+43T>C
  variant of: http://identifiers.org/hgnc/29572
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3173
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7997
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5964
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3077
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4545
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2485
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8449
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7729
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3089
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1828
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6211
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2039
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

19-35750011-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35750011
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 35750011
    reference: chr 19
allele count: 1
allele frequency: 8.603778779640018e-6
allele num: 116228
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354034
  ensembl transcript: ENST00000360798
  gene symbol: LSR
  hgvsc: ENST00000360798.3:c.718+44C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000602044
  gene symbol: LSR
  hgvsc: ENST00000602044.1:n.487+44C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000470630
  ensembl transcript: ENST00000599658
  gene symbol: LSR
  hgvsc: ENST00000599658.1:c.217+44C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000597933
  gene symbol: LSR
  hgvsc: ENST00000597933.1:n.638+44C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000474797
  ensembl transcript: ENST00000605618
  gene symbol: LSR
  hgvsc: ENST00000605618.1:c.476-7251C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000346976
  ensembl transcript: ENST00000354900
  gene symbol: LSR
  hgvsc: ENST00000354900.3:c.718+44C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000262627
  ensembl transcript: ENST00000347609
  gene symbol: LSR
  hgvsc: ENST00000347609.4:c.607+44C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000394479
  ensembl transcript: ENST00000427250
  gene symbol: LSR
  hgvsc: ENST00000427250.1:c.455-7251C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354575
  ensembl transcript: ENST00000361790
  gene symbol: LSR
  hgvsc: ENST00000361790.3:c.718+44C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472569
  ensembl transcript: ENST00000602122
  gene symbol: LSR
  hgvsc: ENST00000602122.1:c.718+44C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472154
  ensembl transcript: ENST00000601623
  gene symbol: LSR
  hgvsc: ENST00000601623.1:c.496+44C>T
  variant of: http://identifiers.org/hgnc/29572
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7726
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3164
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3070
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4545
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6211
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2481
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2054
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8452
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7983
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3089
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5982
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1828
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 458
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum

19-35750012-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35750012
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 35750012
    reference: chr 19
allele count: 6
allele frequency: 5.174197999310107e-5
allele num: 115960
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000602044
  gene symbol: LSR
  hgvsc: ENST00000602044.1:n.487+45C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472154
  ensembl transcript: ENST00000601623
  gene symbol: LSR
  hgvsc: ENST00000601623.1:c.496+45C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000474797
  ensembl transcript: ENST00000605618
  gene symbol: LSR
  hgvsc: ENST00000605618.1:c.476-7250C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354575
  ensembl transcript: ENST00000361790
  gene symbol: LSR
  hgvsc: ENST00000361790.3:c.718+45C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000394479
  ensembl transcript: ENST00000427250
  gene symbol: LSR
  hgvsc: ENST00000427250.1:c.455-7250C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000470630
  ensembl transcript: ENST00000599658
  gene symbol: LSR
  hgvsc: ENST00000599658.1:c.217+45C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000262627
  ensembl transcript: ENST00000347609
  gene symbol: LSR
  hgvsc: ENST00000347609.4:c.607+45C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354034
  ensembl transcript: ENST00000360798
  gene symbol: LSR
  hgvsc: ENST00000360798.3:c.718+45C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472569
  ensembl transcript: ENST00000602122
  gene symbol: LSR
  hgvsc: ENST00000602122.1:c.718+45C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000597933
  gene symbol: LSR
  hgvsc: ENST00000597933.1:n.638+45C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000346976
  ensembl transcript: ENST00000354900
  gene symbol: LSR
  hgvsc: ENST00000354900.3:c.718+45C>T
  variant of: http://identifiers.org/hgnc/29572
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2459
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3254
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1828
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3093
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2147
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8440
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4545
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3089
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7950
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7729
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5840
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6207
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 458
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

19-35750097-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35750097
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 35750097
    reference: chr 19
allele count: 3
allele frequency: 1.904036557501904e-4
allele num: 15756
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000346976
  ensembl transcript: ENST00000354900
  gene symbol: LSR
  hgvsc: ENST00000354900.3:c.718+130C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000602044
  gene symbol: LSR
  hgvsc: ENST00000602044.1:n.487+130C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000470630
  ensembl transcript: ENST00000599658
  gene symbol: LSR
  hgvsc: ENST00000599658.1:c.217+130C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354034
  ensembl transcript: ENST00000360798
  gene symbol: LSR
  hgvsc: ENST00000360798.3:c.718+130C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472569
  ensembl transcript: ENST00000602122
  gene symbol: LSR
  hgvsc: ENST00000602122.1:c.718+130C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000474797
  ensembl transcript: ENST00000605618
  gene symbol: LSR
  hgvsc: ENST00000605618.1:c.476-7165C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472154
  ensembl transcript: ENST00000601623
  gene symbol: LSR
  hgvsc: ENST00000601623.1:c.497-46C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354575
  ensembl transcript: ENST00000361790
  gene symbol: LSR
  hgvsc: ENST00000361790.3:c.718+130C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000262627
  ensembl transcript: ENST00000347609
  gene symbol: LSR
  hgvsc: ENST00000347609.4:c.607+130C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000597933
  gene symbol: LSR
  hgvsc: ENST00000597933.1:n.638+130C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000394479
  ensembl transcript: ENST00000427250
  gene symbol: LSR
  hgvsc: ENST00000427250.1:c.455-7165C>T
  variant of: http://identifiers.org/hgnc/29572
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20693
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8039
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26425
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1712
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum

19-35750099-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35750099
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 35750099
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 15594
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000597933
  gene symbol: LSR
  hgvsc: ENST00000597933.1:n.638+132A>G
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000470630
  ensembl transcript: ENST00000599658
  gene symbol: LSR
  hgvsc: ENST00000599658.1:c.217+132A>G
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472569
  ensembl transcript: ENST00000602122
  gene symbol: LSR
  hgvsc: ENST00000602122.1:c.718+132A>G
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000474797
  ensembl transcript: ENST00000605618
  gene symbol: LSR
  hgvsc: ENST00000605618.1:c.476-7163A>G
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000262627
  ensembl transcript: ENST00000347609
  gene symbol: LSR
  hgvsc: ENST00000347609.4:c.607+132A>G
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472154
  ensembl transcript: ENST00000601623
  gene symbol: LSR
  hgvsc: ENST00000601623.1:c.497-44A>G
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000394479
  ensembl transcript: ENST00000427250
  gene symbol: LSR
  hgvsc: ENST00000427250.1:c.455-7163A>G
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000602044
  gene symbol: LSR
  hgvsc: ENST00000602044.1:n.487+132A>G
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354034
  ensembl transcript: ENST00000360798
  gene symbol: LSR
  hgvsc: ENST00000360798.3:c.718+132A>G
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354575
  ensembl transcript: ENST00000361790
  gene symbol: LSR
  hgvsc: ENST00000361790.3:c.718+132A>G
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000346976
  ensembl transcript: ENST00000354900
  gene symbol: LSR
  hgvsc: ENST00000354900.3:c.718+132A>G
  variant of: http://identifiers.org/hgnc/29572
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 20863
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26822
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7626
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2130
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

19-35750101-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35750101
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 35750101
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 15306
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354575
  ensembl transcript: ENST00000361790
  gene symbol: LSR
  hgvsc: ENST00000361790.3:c.718+134G>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472154
  ensembl transcript: ENST00000601623
  gene symbol: LSR
  hgvsc: ENST00000601623.1:c.497-42G>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000346976
  ensembl transcript: ENST00000354900
  gene symbol: LSR
  hgvsc: ENST00000354900.3:c.718+134G>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354034
  ensembl transcript: ENST00000360798
  gene symbol: LSR
  hgvsc: ENST00000360798.3:c.718+134G>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000470630
  ensembl transcript: ENST00000599658
  gene symbol: LSR
  hgvsc: ENST00000599658.1:c.217+134G>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000262627
  ensembl transcript: ENST00000347609
  gene symbol: LSR
  hgvsc: ENST00000347609.4:c.607+134G>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000602044
  gene symbol: LSR
  hgvsc: ENST00000602044.1:n.487+134G>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000597933
  gene symbol: LSR
  hgvsc: ENST00000597933.1:n.638+134G>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472569
  ensembl transcript: ENST00000602122
  gene symbol: LSR
  hgvsc: ENST00000602122.1:c.718+134G>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000394479
  ensembl transcript: ENST00000427250
  gene symbol: LSR
  hgvsc: ENST00000427250.1:c.455-7161G>A
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000474797
  ensembl transcript: ENST00000605618
  gene symbol: LSR
  hgvsc: ENST00000605618.1:c.476-7161G>A
  variant of: http://identifiers.org/hgnc/29572
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7428
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27007
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20949
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQ

19-35750102-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35750102
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 35750102
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 14172
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000470630
  ensembl transcript: ENST00000599658
  gene symbol: LSR
  hgvsc: ENST00000599658.1:c.217+135C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000394479
  ensembl transcript: ENST00000427250
  gene symbol: LSR
  hgvsc: ENST00000427250.1:c.455-7160C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000346976
  ensembl transcript: ENST00000354900
  gene symbol: LSR
  hgvsc: ENST00000354900.3:c.718+135C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000602044
  gene symbol: LSR
  hgvsc: ENST00000602044.1:n.487+135C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354575
  ensembl transcript: ENST00000361790
  gene symbol: LSR
  hgvsc: ENST00000361790.3:c.718+135C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354034
  ensembl transcript: ENST00000360798
  gene symbol: LSR
  hgvsc: ENST00000360798.3:c.718+135C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000474797
  ensembl transcript: ENST00000605618
  gene symbol: LSR
  hgvsc: ENST00000605618.1:c.476-7160C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472569
  ensembl transcript: ENST00000602122
  gene symbol: LSR
  hgvsc: ENST00000602122.1:c.718+135C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000597933
  gene symbol: LSR
  hgvsc: ENST00000597933.1:n.638+135C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472154
  ensembl transcript: ENST00000601623
  gene symbol: LSR
  hgvsc: ENST00000601623.1:c.497-41C>T
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000262627
  ensembl transcript: ENST00000347609
  gene symbol: LSR
  hgvsc: ENST00000347609.4:c.607+135C>T
  variant of: http://identifiers.org/hgnc/29572
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27972
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20271
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6886
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1930
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff

19-35750121-T-TC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35750121
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 35750122
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 5310
alternate allele: TC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000474797
  ensembl transcript: ENST00000605618
  gene symbol: LSR
  hgvsc: ENST00000605618.1:c.476-7137dupC
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000470630
  ensembl transcript: ENST00000599658
  gene symbol: LSR
  hgvsc: ENST00000599658.1:c.217+158dupC
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354575
  ensembl transcript: ENST00000361790
  gene symbol: LSR
  hgvsc: ENST00000361790.3:c.718+158dupC
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000394479
  ensembl transcript: ENST00000427250
  gene symbol: LSR
  hgvsc: ENST00000427250.1:c.455-7137dupC
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000346976
  ensembl transcript: ENST00000354900
  gene symbol: LSR
  hgvsc: ENST00000354900.3:c.718+158dupC
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000602044
  gene symbol: LSR
  hgvsc: ENST00000602044.1:n.487+158dupC
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354034
  ensembl transcript: ENST00000360798
  gene symbol: LSR
  hgvsc: ENST00000360798.3:c.718+158dupC
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472569
  ensembl transcript: ENST00000602122
  gene symbol: LSR
  hgvsc: ENST00000602122.1:c.718+158dupC
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000597933
  gene symbol: LSR
  hgvsc: ENST00000597933.1:n.638+158dupC
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472154
  ensembl transcript: ENST00000601623
  gene symbol: LSR
  hgvsc: ENST00000601623.1:c.497-18dupC
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000262627
  ensembl transcript: ENST00000347609
  gene symbol: LSR
  hgvsc: ENST00000347609.4:c.607+158dupC
  variant of: http://identifiers.org/hgnc/29572
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13021
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35960
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2602
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

19-35750134-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35750134
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 35750134
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 2400
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000346976
  ensembl transcript: ENST00000354900
  gene symbol: LSR
  hgvsc: ENST00000354900.3:c.718+167G>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000474797
  ensembl transcript: ENST00000605618
  gene symbol: LSR
  hgvsc: ENST00000605618.1:c.476-7128G>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472569
  ensembl transcript: ENST00000602122
  gene symbol: LSR
  hgvsc: ENST00000602122.1:c.718+167G>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472154
  ensembl transcript: ENST00000601623
  gene symbol: LSR
  hgvsc: ENST00000601623.1:c.497-9G>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000262627
  ensembl transcript: ENST00000347609
  gene symbol: LSR
  hgvsc: ENST00000347609.4:c.607+167G>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354034
  ensembl transcript: ENST00000360798
  gene symbol: LSR
  hgvsc: ENST00000360798.3:c.718+167G>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000394479
  ensembl transcript: ENST00000427250
  gene symbol: LSR
  hgvsc: ENST00000427250.1:c.455-7128G>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000470630
  ensembl transcript: ENST00000599658
  gene symbol: LSR
  hgvsc: ENST00000599658.1:c.217+167G>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354575
  ensembl transcript: ENST00000361790
  gene symbol: LSR
  hgvsc: ENST00000361790.3:c.718+167G>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000597933
  gene symbol: LSR
  hgvsc: ENST00000597933.1:n.638+167G>C
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000602044
  gene symbol: LSR
  hgvsc: ENST00000602044.1:n.487+167G>C
  variant of: http://identifiers.org/hgnc/29572
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8255
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37350
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1181
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

19-35750139-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35750139
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 35750139
    reference: chr 19
allele count: 1
allele frequency: 4.965243296921549e-4
allele num: 2014
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000346976
  ensembl transcript: ENST00000354900
  gene symbol: LSR
  hgvsc: ENST00000354900.3:c.718+172C>G
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472154
  ensembl transcript: ENST00000601623
  gene symbol: LSR
  hgvsc: ENST00000601623.1:c.497-4C>G
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000470630
  ensembl transcript: ENST00000599658
  gene symbol: LSR
  hgvsc: ENST00000599658.1:c.217+172C>G
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000602044
  gene symbol: LSR
  hgvsc: ENST00000602044.1:n.487+172C>G
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl transcript: ENST00000597933
  gene symbol: LSR
  hgvsc: ENST00000597933.1:n.638+172C>G
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354034
  ensembl transcript: ENST00000360798
  gene symbol: LSR
  hgvsc: ENST00000360798.3:c.718+172C>G
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000262627
  ensembl transcript: ENST00000347609
  gene symbol: LSR
  hgvsc: ENST00000347609.4:c.607+172C>G
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000354575
  ensembl transcript: ENST00000361790
  gene symbol: LSR
  hgvsc: ENST00000361790.3:c.718+172C>G
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000474797
  ensembl transcript: ENST00000605618
  gene symbol: LSR
  hgvsc: ENST00000605618.1:c.476-7123C>G
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000394479
  ensembl transcript: ENST00000427250
  gene symbol: LSR
  hgvsc: ENST00000427250.1:c.455-7123C>G
  variant of: http://identifiers.org/hgnc/29572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105699
  ensembl protein: ENSP00000472569
  ensembl transcript: ENST00000602122
  gene symbol: LSR
  hgvsc: ENST00000602122.1:c.718+172C>G
  variant of: http://identifiers.org/hgnc/29572
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7211
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 37627
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
hgvs: c.497-4C>G
num of homozygotes: 0
reference allele: C

GenotypeDepth
all individuals: 74
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40114
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 463
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5588
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1583
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 484
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7408
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1455
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 571
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 477
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 978
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 1
allele frequency: 7.844367743959836e-5
allele num: 12748
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63802
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9956
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6358
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8540
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11426
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.795e0

DP
type: SiteQuality
SIO_000300: 1.554234e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.56e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.36e-1

FS
type: SiteQuality
SIO_000300: 5.517e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 7.73e-1

QD
type: SiteQuality
SIO_000300: 1.487e1

GenotypeDepth
all individuals: 57
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7377
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40352
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5663
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 571
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 977
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 165
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 475
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 453
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 463
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1572
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1444
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11430
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9950
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.568627450980392e-5
allele num: 63750
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6358
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8532
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.61e-1

DP
type: SiteQuality
SIO_000300: 1.553419e6

FS
type: SiteQuality
SIO_000300: 1.129e0

VQSLOD
type: SiteQuality
SIO_000300: -8.593e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

MQ
type: SiteQuality
SIO_000300: 5.961e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.265e0

QD
type: SiteQuality
SIO_000300: 1.784e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.307e0

GenotypeDepth
all individuals: 30
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 466
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 964
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 37
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 617
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 421
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1534
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6012
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40060
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1402
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 544
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7317
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6330
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12378
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11400
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8522
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9882
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.15308213778969e-5
allele num: 63430
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

QD
type: SiteQuality
SIO_000300: 1.076e1

DP
type: SiteQuality
SIO_000300: 1.54364e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.76e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.55e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.49e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.45e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.34e-1

GenotypeDepth
all individuals: 89
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 291
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 285
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6885
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1628
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6854
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 476
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 375
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37985
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 948
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 507
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 577
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1271
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1426
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10966
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.615665492616409e-5
allele num: 61894
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11234
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 758
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6112
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.08e0

MQRankSum
type: SiteQuality
SIO_000300: 1.1e0

QD
type: SiteQuality
SIO_000300: 9.630000000000001e0

DP
type: SiteQuality
SIO_000300: 1.491241e6

VQSLOD
type: SiteQuality
SIO_000300: 6.63e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.092e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.56e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

GenotypeDepth
all individuals: 172
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7375
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2022
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 563
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 339
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1349
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 434
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1184
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37065
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 940
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 132
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 668
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 397
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 470
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6665
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61288
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9318
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6034
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8354
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.981498113885396e-5
allele num: 11134
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 744
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.1868e1

DP
type: SiteQuality
SIO_000300: 1.467323e6

VQSLOD
type: SiteQuality
SIO_000300: -1.463e0

MQ
type: SiteQuality
SIO_000300: 5.974e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.93e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.97e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.2e-2

QD
type: SiteQuality
SIO_000300: 1.01e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.96e-1

GenotypeDepth
all individuals: 57
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 317
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 551
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2054
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 647
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 407
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 310
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6592
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 934
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 37404
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1318
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7462
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1139
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 4.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9298
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11126
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6044
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.792715073088905e-4
allele num: 8346
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10346
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 744
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61252
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.94e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.6e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.08e0

DP
type: SiteQuality
SIO_000300: 1.465805e6

FS
type: SiteQuality
SIO_000300: 7.217e0

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

MQ
type: SiteQuality
SIO_000300: 5.9e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.1e-1

QD
type: SiteQuality
SIO_000300: 1.331e1

GenotypeDepth
all individuals: 172
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 328
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.037106685919608e-5
allele num: 59558
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9532
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10834
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5796
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8188
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.129688206055129e-4
allele num: 8852
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 702
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.89e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.8e-3

QD
type: SiteQuality
SIO_000300: 7.44e0

FS
type: SiteQuality
SIO_000300: 2.093e0

MQRankSum
type: SiteQuality
SIO_000300: 3.46e-1

BaseQRankSum
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SIO_000300: -3.092e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 5.49e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.1e-2

DP
type: SiteQuality
SIO_000300: 1.394935e6

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 5730
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8054
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5592
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 684
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8954
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.162790697674419e-4
allele num: 8600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.441629955947137e-5
allele num: 58112
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10544
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 9.25e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.16e-1

FS
type: SiteQuality
SIO_000300: 4.069e0

DP
type: SiteQuality
SIO_000300: 1.331037e6

VQSLOD
type: SiteQuality
SIO_000300: 1.34e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 9.27e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.65e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.02e-1

GenotypeDepth
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variant carriers: 1

GenotypeQuality
all individuals: 969
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 902
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 517
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GenotypeQuality
all individuals: 86
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.461405330564209e-5
allele num: 57780
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 682
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8876
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.531071292413267e-5
allele num: 10492
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8006
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5570
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.464e0

MQ
type: SiteQuality
SIO_000300: 5.844e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.071e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.02e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.91e-1

QD
type: SiteQuality
SIO_000300: 6.15e0

DP
type: SiteQuality
SIO_000300: 1.317606e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.06e-1

GenotypeDepth
all individuals: 7033
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variant carriers: 1

GenotypeQuality
all individuals: 902
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 260
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 30893
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GenotypeQuality
all individuals: 709
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8876
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10492
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 682
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.249063202598052e-4
allele num: 8006
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57780
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.844e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.2e-3

VQSLOD
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SIO_000300: -2.464e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.071e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.06e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.91e-1

QD
type: SiteQuality
SIO_000300: 6.15e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.02e-1

DP
type: SiteQuality
SIO_000300: 1.317606e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 12982
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.929905820595955e-5
allele num: 51816
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7232
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7500
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9220
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
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allele num: 606
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MQRankSum
type: SiteQuality
SIO_000300: 2.97e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.09e-2

MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 5.669999999999999e-1

DP
type: SiteQuality
SIO_000300: 9.55193e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.827e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.58e-1

FS
type: SiteQuality
SIO_000300: 1.496e0

VQSLOD
type: SiteQuality
SIO_000300: -1.139e0

QD
type: SiteQuality
SIO_000300: 3.156e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.931247585940517e-5
allele num: 51780
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7492
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4894
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7448
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7222
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
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allele num: 606
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
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ReadPosRankSum
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
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BaseQRankSum
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SIO_000300: -1.599e0

MQ
type: SiteQuality
SIO_000300: 5.889e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.169999999999999e-1

DP
type: SiteQuality
SIO_000300: 9.53261e5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 431
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GenotypeQuality
all individuals: 282
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GenotypeQuality
all individuals: 50
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 51510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4876
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9150
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7478
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7416
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 4.181767493727349e-4
allele num: 7174
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 596
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.12e-2

DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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MQRankSum
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QD
type: SiteQuality
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ClippingRankSum
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 6.8e-1

GenotypeQuality
all individuals: 5721
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 824
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2716
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 471
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 550
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5907
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 300
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 689
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 854
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5338
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 905
bin: 9.75e1
variant carriers: 32

GenotypeQuality
all individuals: 1613
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 22349
bin: 2.25e1
variant carriers: 2

GenotypeQuality
all individuals: 10122
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 58
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 508
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4762
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.700680272108843e-3
allele num: 588
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.118318049653321e-4
allele num: 8942
num of homozygotes: 0

South Asian
type: Population
allele count: 22
allele frequency: 3.001364256480218e-3
allele num: 7330
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7060
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 1.182778741523419e-4
allele num: 50728
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7248
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.257e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.709e0

VQSLOD
type: SiteQuality
SIO_000300: 4.6e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.8e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.07e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

DP
type: SiteQuality
SIO_000300: 8.96053e5

GenotypeQuality
all individuals: 1054
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6040
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 886
bin: 9.75e1
variant carriers: 13

GenotypeQuality
all individuals: 1126
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2135
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7005
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2034
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4325
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1266
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 464
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 86
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 355
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7630
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 21212
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3148
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 8.75e1
variant carriers: 2

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45608
num of homozygotes: 0

African
type: Population
allele count: 15
allele frequency: 2.368919772583702e-3
allele num: 6332
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6346
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 546
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4212
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6538
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.48e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 7.55163e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.49e-2

MQRankSum
type: SiteQuality
SIO_000300: -3.42e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.53e0

QD
type: SiteQuality
SIO_000300: 1.361e1

FS
type: SiteQuality
SIO_000300: 1.61e0

GenotypeQuality
all individuals: 1624
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4339
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7531
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2287
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 124
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variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7309
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1266
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2564
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2675
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5989
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20024
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 402
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1378
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 399
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 878
bin: 9.75e1
variant carriers: 4

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 514
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5994
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6266
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6044
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.876317960942514e-5
allele num: 43628
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7206
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3988
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.088e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.86e0

QD
type: SiteQuality
SIO_000300: 1.397e1

VQSLOD
type: SiteQuality
SIO_000300: 6.97e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -7.7e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.37e-1

DP
type: SiteQuality
SIO_000300: 7.35803e5

GenotypeQuality
all individuals: 2779
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 386
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2174
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7519
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19841
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1393
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1296
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1623
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4381
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5965
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7377
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 878
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 81
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2678
bin: 1.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3970
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6234
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5978
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7142
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.312459531958191e-5
allele num: 43244
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5916
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.06e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e0

QD
type: SiteQuality
SIO_000300: 9.68e0

VQSLOD
type: SiteQuality
SIO_000300: 6.73e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.22e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.87e-1

FS
type: SiteQuality
SIO_000300: 4.191e0

DP
type: SiteQuality
SIO_000300: 7.3072e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.6e-2

GenotypeQuality
all individuals: 109
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2779
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1623
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7519
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 878
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1296
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1393
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19841
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7377
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2174
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2678
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4381
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 394
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 386
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.312459531958191e-5
allele num: 43244
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5978
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5916
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6234
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7142
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3970
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.22e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.06e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.73e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.6e-2

FS
type: SiteQuality
SIO_000300: 4.191e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e0

QD
type: SiteQuality
SIO_000300: 9.68e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.87e-1

DP
type: SiteQuality
SIO_000300: 7.3072e5

GenotypeQuality
all individuals: 2174
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1393
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5965
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1296
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19841
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7377
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1623
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 878
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 45
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 394
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2678
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4381
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2779
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 386
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 510
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6234
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3970
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5978
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7142
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5916
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43244
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.87e-1

DP
type: SiteQuality
SIO_000300: 7.3072e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.06e-1

QD
type: SiteQuality
SIO_000300: 9.68e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.22e-1

FS
type: SiteQuality
SIO_000300: 4.191e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e0

VQSLOD
type: SiteQuality
SIO_000300: 6.73e-1

GenotypeQuality
all individuals: 1502
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5785
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1632
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 758
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1268
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16242
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1939
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5658
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7103
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 875
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4516
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3395
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6382
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.473655568198684e-5
allele num: 40426
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5928
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5478
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3700
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 484
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.21e-1

QD
type: SiteQuality
SIO_000300: 1.068e1

DP
type: SiteQuality
SIO_000300: 7.15701e5

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.91e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -8.169999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.1e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.33e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 2799
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2298
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 401
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5573
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12111
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3914
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4418
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4132
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10222
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.50934283213089e-5
allele num: 66254
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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MQ
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InbreedingCoeff
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BaseQRankSum
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FS
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SIO_000300: 6.48e-1

ClippingRankSum
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SIO_000300: 3.82e-1

QD
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SIO_000300: 1.164e1

DP
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VQSLOD
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SIO_000300: 2.62e-1

MQRankSum
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SIO_000300: -1.145e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 1

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10236
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

South Asian
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allele count: 28
allele frequency: 1.701300279499332e-3
allele num: 16458
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8628
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66286
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Other
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allele num: 896
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InbreedingCoeff
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MQ
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DP
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ClippingRankSum
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BaseQRankSum
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VQSLOD
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QD
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ReadPosRankSum
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FS
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SIO_000300: 1.166e0

MQRankSum
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SIO_000300: -6.1e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.073120369245719e-5
allele num: 16466
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10240
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66292
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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BaseQRankSum
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SIO_000300: -2.286e0

MQRankSum
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SIO_000300: 4.77e-1

ClippingRankSum
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QD
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DP
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InbreedingCoeff
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VQSLOD
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FS
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SIO_000300: 1.806e0

MQ
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SIO_000300: 6.0e1

ReadPosRankSum
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SIO_000300: -5.3e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16466
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.508159140952553e-5
allele num: 66306
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

African
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allele count: 7
allele frequency: 6.8359375e-4
allele num: 10240
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.39e-1

DP
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SIO_000300: 2.450487e6

ReadPosRankSum
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QD
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InbreedingCoeff
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SIO_000300: -1.0e-4

MQRankSum
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FS
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MQ
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SIO_000300: 5.969e1

VQSLOD
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BaseQRankSum
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SIO_000300: -5.659999999999999e-1

GenotypeDepth
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

East Asian
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allele count: 7
allele frequency: 8.105604446503011e-4
allele num: 8636
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

African
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allele count: 24
allele frequency: 2.339637356209788e-3
allele num: 10258
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.071645415907711e-5
allele num: 16470
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European (Non-Finnish)
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allele count: 2
allele frequency: 3.013500482160077e-5
allele num: 66368
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.454212e6

InbreedingCoeff
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BaseQRankSum
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FS
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QD
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MQ
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MQRankSum
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ReadPosRankSum
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VQSLOD
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ClippingRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.506024096385542e-5
allele num: 66400
num of homozygotes: 0

Other
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Latino
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allele count: 0
allele frequency: 0.0e0
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African
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South Asian
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FS
type: SiteQuality
SIO_000300: 3.917e0

BaseQRankSum
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MQRankSum
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DP
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MQ
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ReadPosRankSum
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QD
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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allele frequency: 0.0e0
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African
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European (Finnish)
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Latino
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Other
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European (Non-Finnish)
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ReadPosRankSum
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DP
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InbreedingCoeff
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ClippingRankSum
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FS
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QD
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VQSLOD
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MQRankSum
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BaseQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 66516
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Other
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Latino
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European (Finnish)
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African
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East Asian
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South Asian
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FS
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BaseQRankSum
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MQ
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VQSLOD
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MQRankSum
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DP
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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European (Non-Finnish)
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MQ
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ClippingRankSum
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DP
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VQSLOD
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InbreedingCoeff
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FS
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MQRankSum
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QD
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BaseQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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South Asian
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East Asian
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Other
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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MQRankSum
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QD
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FS
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ClippingRankSum
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DP
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MQ
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GenotypeQuality
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GenotypeQuality
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Latino
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East Asian
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African
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European (Finnish)
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South Asian
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InbreedingCoeff
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MQ
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QD
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DP
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FS
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VQSLOD
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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East Asian
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Latino
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European (Finnish)
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African
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ReadPosRankSum
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DP
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QD
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FS
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MQRankSum
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MQ
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VQSLOD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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Latino
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European (Finnish)
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South Asian
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FS
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ReadPosRankSum
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VQSLOD
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MQRankSum
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ClippingRankSum
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MQ
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QD
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DP
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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Other
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European (Non-Finnish)
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South Asian
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MQRankSum
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ClippingRankSum
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VQSLOD
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QD
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InbreedingCoeff
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DP
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MQ
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GenotypeQuality
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European (Finnish)
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Latino
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African
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VQSLOD
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MQRankSum
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ReadPosRankSum
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QD
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GenotypeQuality
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African
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allele count: 3
allele frequency: 2.888503755054881e-4
allele num: 10386
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16446
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66608
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

FS
type: SiteQuality
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DP
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VQSLOD
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QD
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MQ
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SIO_000300: 5.822e1

ClippingRankSum
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SIO_000300: -2.31e-1

MQRankSum
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SIO_000300: 5.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 9.08e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.03e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.501185936890143e-5
allele num: 66614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16444
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.941e1

MQRankSum
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QD
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FS
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SIO_000300: 7.53e-1

ClippingRankSum
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SIO_000300: -1.043e0

VQSLOD
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ReadPosRankSum
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SIO_000300: 1.05e0

BaseQRankSum
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SIO_000300: -4.026e0

InbreedingCoeff
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SIO_000300: -1.0e-4

DP
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SIO_000300: 2.454903e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.501276084671971e-5
allele num: 66610
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
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InbreedingCoeff
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ReadPosRankSum
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QD
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MQ
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SIO_000300: 5.962e1

BaseQRankSum
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SIO_000300: -7.93e-1

FS
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SIO_000300: 1.067e0

MQRankSum
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SIO_000300: 8.52e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.447e-1

DP
type: SiteQuality
SIO_000300: 2.454278e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501862309263487e-5
allele num: 66584
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16408
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.04e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.06e0

VQSLOD
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SIO_000300: -1.636e0

FS
type: SiteQuality
SIO_000300: 9.169e0

ReadPosRankSum
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SIO_000300: -6.43e-1

MQ
type: SiteQuality
SIO_000300: 5.893e1

QD
type: SiteQuality
SIO_000300: 1.893e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.234e0

DP
type: SiteQuality
SIO_000300: 2.452687e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.108735491753207e-5
allele num: 16370
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.725e1

FS
type: SiteQuality
SIO_000300: 2.781e0

BaseQRankSum
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SIO_000300: -9.389999999999999e-1

VQSLOD
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DP
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ClippingRankSum
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InbreedingCoeff
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SIO_000300: 7.91e-2

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 5.600000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6544
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66542
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
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South Asian
type: Population
allele count: 1
allele frequency: 6.156119182467373e-5
allele num: 16244
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ClippingRankSum
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QD
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VQSLOD
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FS
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MQ
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
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South Asian
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allele count: 0
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African
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allele frequency: 9.622786759045419e-5
allele num: 10392
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6542
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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Latino
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East Asian
type: Population
allele count: 19
allele frequency: 2.196531791907515e-3
allele num: 8650
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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FS
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MQ
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QD
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ReadPosRankSum
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MQRankSum
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6542
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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African
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allele frequency: 9.622786759045419e-5
allele num: 10392
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66522
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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ClippingRankSum
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SIO_000300: -5.86e-1

MQ
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BaseQRankSum
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SIO_000300: -4.38e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 9.5e0

MQRankSum
type: SiteQuality
SIO_000300: 5.52e-1

FS
type: SiteQuality
SIO_000300: 2.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.1e0

DP
type: SiteQuality
SIO_000300: 2.442768e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.97e-1

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2742
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4096
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24091
bin: 9.75e1
variant carriers: 8

Latino
type: Population
allele count: 8
allele frequency: 6.918021445866483e-4
allele num: 11564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16078
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66482
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6542
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.54e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 2.438859e6

FS
type: SiteQuality
SIO_000300: 5.49e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.28e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.248e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.61e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.97e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.820000000000001e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 24086
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505026789476853e-5
allele num: 66444
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15992
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6536
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.0e-3

MQ
type: SiteQuality
SIO_000300: 5.976e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -5.897e0

FS
type: SiteQuality
SIO_000300: 6.077e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.969e0

VQSLOD
type: SiteQuality
SIO_000300: 5.13e-1

QD
type: SiteQuality
SIO_000300: 1.459e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.83e0

DP
type: SiteQuality
SIO_000300: 2.435485e6

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 24085
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 5310
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.054502726642765e-4
allele num: 66382
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6520
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15818
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.03e0

FS
type: SiteQuality
SIO_000300: 1.161e0

MQRankSum
type: SiteQuality
SIO_000300: 4.61e-1

DP
type: SiteQuality
SIO_000300: 2.427528e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.82e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 2.53e0

QD
type: SiteQuality
SIO_000300: 1.254e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.45e-1

GenotypeQuality
all individuals: 4305
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 11721
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variant carriers: 0

GenotypeQuality
all individuals: 15
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 6

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5302
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GenotypeQuality
all individuals: 88
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.533742331288344e-4
allele num: 6520
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.469812630117973e-4
allele num: 8646
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66372
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.26806999746386e-4
allele num: 15772
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.7e-3

QD
type: SiteQuality
SIO_000300: 1.234e1

DP
type: SiteQuality
SIO_000300: 2.425637e6

BaseQRankSum
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SIO_000300: -1.034e0

MQ
type: SiteQuality
SIO_000300: 5.901e1

FS
type: SiteQuality
SIO_000300: 4.452e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -2.5e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 31

GenotypeQuality
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GenotypeQuality
all individuals: 4282
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66314
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6518
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.242152466367713e-3
allele num: 892
num of homozygotes: 0

South Asian
type: Population
allele count: 31
allele frequency: 1.978807608834419e-3
allele num: 15666
num of homozygotes: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.236e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.07e-1

MQRankSum
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DP
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InbreedingCoeff
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SIO_000300: 2.61e-2

VQSLOD
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SIO_000300: 3.64e0

FS
type: SiteQuality
SIO_000300: 1.22e0

MQ
type: SiteQuality
SIO_000300: 5.969e1

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 4.29e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15634
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508250128201261e-5
allele num: 66302
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6516
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.52e0

BaseQRankSum
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SIO_000300: 1.2e0

InbreedingCoeff
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SIO_000300: -2.0e-4

MQRankSum
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ClippingRankSum
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SIO_000300: -9.51e-1

QD
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SIO_000300: 1.166e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.19e-1

MQ
type: SiteQuality
SIO_000300: 5.816e1

FS
type: SiteQuality
SIO_000300: 7.99e0

DP
type: SiteQuality
SIO_000300: 2.419921e6

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 387
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GenotypeQuality
all individuals: 5097
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15330
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.511030522816561e-5
allele num: 66180
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.089e1

BaseQRankSum
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SIO_000300: 1.77e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
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ClippingRankSum
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VQSLOD
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FS
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.404755e6

MQRankSum
type: SiteQuality
SIO_000300: 1.08e0

ReadPosRankSum
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SIO_000300: 2.2e0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6508
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15286
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.045766452041957e-5
allele num: 66162
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
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MQRankSum
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SIO_000300: 9.06e-1

ReadPosRankSum
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BaseQRankSum
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SIO_000300: -1.443e0

QD
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SIO_000300: 1.185e1

VQSLOD
type: SiteQuality
SIO_000300: 2.21e-1

InbreedingCoeff
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SIO_000300: -3.0e-4

DP
type: SiteQuality
SIO_000300: 2.402744e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.73e-1

MQ
type: SiteQuality
SIO_000300: 5.915e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.515013786625458e-5
allele num: 66006
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6488
num of homozygotes: 0

QD
type: SiteQuality
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FS
type: SiteQuality
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MQ
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SIO_000300: 6.0e1

ClippingRankSum
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SIO_000300: 2.21e-1

InbreedingCoeff
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SIO_000300: -4.0e-4

DP
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SIO_000300: 2.386672e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.17e-1

MQRankSum
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SIO_000300: 1.7e0

VQSLOD
type: SiteQuality
SIO_000300: -2.344e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.167e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 5

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.06501698204755e-5
allele num: 65952
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.661008141347653e-5
allele num: 11546
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6476
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14810
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.033e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.399999999999999e-1

ClippingRankSum
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SIO_000300: -6.05e-1

DP
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FS
type: SiteQuality
SIO_000300: 1.4818e1

MQRankSum
type: SiteQuality
SIO_000300: 2.93e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

QD
type: SiteQuality
SIO_000300: 9.289999999999999e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.33e0

VQSLOD
type: SiteQuality
SIO_000300: -6.005e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6470
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.519572088499878e-5
allele num: 65808
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.48e0

QD
type: SiteQuality
SIO_000300: 4.9e0

DP
type: SiteQuality
SIO_000300: 2.363038e6

ClippingRankSum
type: SiteQuality
SIO_000300: 6.35e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.654e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.47e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

MQ
type: SiteQuality
SIO_000300: 5.611e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.35e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 24

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6466
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

African
type: Population
allele count: 24
allele frequency: 2.316602316602316e-3
allele num: 10360
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14356
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65756
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.54e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.83e-1

FS
type: SiteQuality
SIO_000300: 2.297e0

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.37e0

MQ
type: SiteQuality
SIO_000300: 5.957e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.444e0

DP
type: SiteQuality
SIO_000300: 2.359995e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65596
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10348
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6460
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.319647413593134e-4
allele num: 8622
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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QD
type: SiteQuality
SIO_000300: 1.88e0

BaseQRankSum
type: SiteQuality
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ReadPosRankSum
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MQRankSum
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VQSLOD
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MQ
type: SiteQuality
SIO_000300: 4.994e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.04e-1

FS
type: SiteQuality
SIO_000300: 5.965e0

InbreedingCoeff
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SIO_000300: 1.1e-3

DP
type: SiteQuality
SIO_000300: 2.348241e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13590
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.527977263698316e-5
allele num: 65446
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
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ClippingRankSum
type: SiteQuality
SIO_000300: -7.8e-2

MQ
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13618
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6448
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East Asian
type: Population
allele count: 16
allele frequency: 1.857441374506617e-3
allele num: 8614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65466
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.337636e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.18e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

QD
type: SiteQuality
SIO_000300: 1.316e1

MQ
type: SiteQuality
SIO_000300: 5.964e1

FS
type: SiteQuality
SIO_000300: 2.091e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.24e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.15e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.679999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.18e0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10322
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6440
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13298
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.530690341343946e-5
allele num: 65330
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.94e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
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SIO_000300: -7.0e-4

VQSLOD
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SIO_000300: 2.16e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.0e-2

QD
type: SiteQuality
SIO_000300: 2.059e1

DP
type: SiteQuality
SIO_000300: 2.331574e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.9e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.94e-1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65286
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10322
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.581501137225171e-5
allele num: 13190
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6442
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.331348e6

MQ
type: SiteQuality
SIO_000300: 5.866e1

VQSLOD
type: SiteQuality
SIO_000300: -1.062e0

ReadPosRankSum
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SIO_000300: -2.25e-1

QD
type: SiteQuality
SIO_000300: 1.154e1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.65e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -6.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.27e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10316
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.325581395348837e-4
allele num: 8600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13060
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.600803607030028e-5
allele num: 65206
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6416
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.680555555555556e-5
allele num: 11520
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.403e0

QD
type: SiteQuality
SIO_000300: 7.3e0

DP
type: SiteQuality
SIO_000300: 2.329405e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.73e-1

FS
type: SiteQuality
SIO_000300: 1.5219e1

MQRankSum
type: SiteQuality
SIO_000300: -1.73e-1

MQ
type: SiteQuality
SIO_000300: 5.969e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.89e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 4.05e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1296
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 1.621621621621622e-3
allele num: 1850
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1000
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9552
num of homozygotes: 0

East Asian
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allele count: 0
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MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

QD
type: SiteQuality
SIO_000300: 1.25e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
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SIO_000300: 3.36053e5

ClippingRankSum
type: SiteQuality
SIO_000300: -1.85e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

InbreedingCoeff
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SIO_000300: -6.03e-2

FS
type: SiteQuality
SIO_000300: 6.502e0

VQSLOD
type: SiteQuality
SIO_000300: -1.08e0

BaseQRankSum
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SIO_000300: -1.92e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

South Asian
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allele frequency: 0.0e0
allele num: 1278
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 9452
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1814
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 970
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1016
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 932
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.31001e5

MQ
type: SiteQuality
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VQSLOD
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QD
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BaseQRankSum
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InbreedingCoeff
type: SiteQuality
SIO_000300: -6.01e-2

FS
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MQRankSum
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ReadPosRankSum
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SIO_000300: 3.61e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.06e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 9278
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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DP
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VQSLOD
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FS
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QD
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ClippingRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 1632
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 122
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 8664
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.17419e5

ReadPosRankSum
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BaseQRankSum
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MQRankSum
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VQSLOD
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MQ
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FS
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QD
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ClippingRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2512
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 351
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3120
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 778
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 322
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 458
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 288
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 280
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.2e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.38e0

VQSLOD
type: SiteQuality
SIO_000300: -7.147e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.38e0

DP
type: SiteQuality
SIO_000300: 2.1884e5

QD
type: SiteQuality
SIO_000300: 7.68e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.13e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.38e0

GenotypeQuality
all individuals: 3275
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1195
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35348
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 127
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1537
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5135
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 396
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1318
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 124
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 224
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 144
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 150
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.38e0

QD
type: SiteQuality
SIO_000300: 1.364e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.2e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.402e0

DP
type: SiteQuality
SIO_000300: 1.6573e5

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.29e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.2e-1

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35817
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.25e1
variant carriers: 0