X-123615563-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24123615563
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24123615563
    reference: chr 0
allele count: 24
allele frequency: 4.487658937920718e-3
allele num: 5348
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009694
  ensembl transcript: ENST00000461429
  gene symbol: TENM1
  hgvsc: ENST00000461429.1:n.382+19A>T
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000403954
  ensembl transcript: ENST00000422452
  gene symbol: TENM1
  hgvsc: ENST00000422452.2:c.3949+19A>T
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000360171
  ensembl transcript: ENST00000371130
  gene symbol: TENM1
  hgvsc: ENST00000371130.3:c.3928+19A>T
  variant of: http://identifiers.org/hgnc/8117
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 54
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 236
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 800
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  variant carriers: 4
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 113
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
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genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 3.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 1173
  bin: 2.75e1
  variant carriers: 29
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 14833
  bin: 2.25e1
  variant carriers: 60
genotype quality: GenotypeQuality
  all individuals: 790
  bin: 3.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 186
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 41
  bin: 9.25e1
  variant carriers: 3
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD

X-123615563-T-TATA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24123615563
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24123615566
    reference: chr 0
allele count: 2
allele frequency: 3.739715781600598e-4
allele num: 5348
alternate allele: TATA
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000403954
  ensembl transcript: ENST00000422452
  gene symbol: TENM1
  hgvsc: ENST00000422452.2:c.3949+18_3949+19insTAT
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000360171
  ensembl transcript: ENST00000371130
  gene symbol: TENM1
  hgvsc: ENST00000371130.3:c.3928+18_3928+19insTAT
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009694
  ensembl transcript: ENST00000461429
  gene symbol: TENM1
  hgvsc: ENST00000461429.1:n.382+18_382+19insTAT
  variant of: http://identifiers.org/hgnc/8117
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28089
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 790
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS

X-123615563-T-TATATATA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24123615563
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24123615570
    reference: chr 0
allele count: 2
allele frequency: 3.739715781600598e-4
allele num: 5348
alternate allele: TATATATA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000360171
  ensembl transcript: ENST00000371130
  gene symbol: TENM1
  hgvsc: ENST00000371130.3:c.3928+18_3928+19insTATATAT
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009694
  ensembl transcript: ENST00000461429
  gene symbol: TENM1
  hgvsc: ENST00000461429.1:n.382+18_382+19insTATATAT
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000403954
  ensembl transcript: ENST00000422452
  gene symbol: TENM1
  hgvsc: ENST00000422452.2:c.3949+18_3949+19insTATATAT
  variant of: http://identifiers.org/hgnc/8117
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 5
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 118
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ

X-123615563-T-TATATATATA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24123615563
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24123615572
    reference: chr 0
allele count: 2
allele frequency: 3.739715781600598e-4
allele num: 5348
alternate allele: TATATATATA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000360171
  ensembl transcript: ENST00000371130
  gene symbol: TENM1
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009694
  ensembl transcript: ENST00000461429
  gene symbol: TENM1
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000403954
  ensembl transcript: ENST00000422452
  gene symbol: TENM1
  variant of: http://identifiers.org/hgnc/8117
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 65
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  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

X-123615563-T-TATATATATATA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24123615563
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24123615574
    reference: chr 0
allele count: 3
allele frequency: 5.609573672400897e-4
allele num: 5348
alternate allele: TATATATATATA
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009694
  ensembl transcript: ENST00000461429
  gene symbol: TENM1
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000403954
  ensembl transcript: ENST00000422452
  gene symbol: TENM1
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000360171
  ensembl transcript: ENST00000371130
  gene symbol: TENM1
  variant of: http://identifiers.org/hgnc/8117
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD

X-123615563-T-TATATATATATATATA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24123615563
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24123615578
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 5348
alternate allele: TATATATATATATATA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000360171
  ensembl transcript: ENST00000371130
  gene symbol: TENM1
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009694
  ensembl transcript: ENST00000461429
  gene symbol: TENM1
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000403954
  ensembl transcript: ENST00000422452
  gene symbol: TENM1
  variant of: http://identifiers.org/hgnc/8117
canonical: true
consequence: intron
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 66
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  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
reference allele: T
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD

X-123615567-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24123615567
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24123615567
    reference: chr 0
allele count: 24
allele frequency: 1.659751037344398e-3
allele num: 14460
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000403954
  ensembl transcript: ENST00000422452
  gene symbol: TENM1
  hgvsc: ENST00000422452.2:c.3949+15A>T
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000360171
  ensembl transcript: ENST00000371130
  gene symbol: TENM1
  hgvsc: ENST00000371130.3:c.3928+15A>T
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009694
  ensembl transcript: ENST00000461429
  gene symbol: TENM1
  hgvsc: ENST00000461429.1:n.382+15A>T
  variant of: http://identifiers.org/hgnc/8117
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 7
num of homozygotes: 0
population: African
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD

X-123615571-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24123615571
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24123615571
    reference: chr 0
allele count: 22
allele frequency: 7.689350249903883e-4
allele num: 28611
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009694
  ensembl transcript: ENST00000461429
  gene symbol: TENM1
  hgvsc: ENST00000461429.1:n.382+11A>T
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000360171
  ensembl transcript: ENST00000371130
  gene symbol: TENM1
  hgvsc: ENST00000371130.3:c.3928+11A>T
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000403954
  ensembl transcript: ENST00000422452
  gene symbol: TENM1
  hgvsc: ENST00000422452.2:c.3949+11A>T
  variant of: http://identifiers.org/hgnc/8117
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 282
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  variant carriers: 4
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: BaseQRankSum

X-123615573-A-ATTTT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24123615573
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24123615577
    reference: chr 0
allele count: 16
allele frequency: 4.211080405316489e-4
allele num: 37995
alternate allele: ATTTT
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000403954
  ensembl transcript: ENST00000422452
  gene symbol: TENM1
  hgvsc: ENST00000422452.2:c.3949+5_3949+8dupAAAA
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000360171
  ensembl transcript: ENST00000371130
  gene symbol: TENM1
  hgvsc: ENST00000371130.3:c.3928+5_3928+8dupAAAA
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009694
  ensembl transcript: ENST00000461429
  gene symbol: TENM1
  hgvsc: ENST00000461429.1:n.382+5_382+8dupAAAA
  variant of: http://identifiers.org/hgnc/8117
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14411
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5600
  bin: 7.5e0
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 873
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 1.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 499
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1777
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 414
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2362
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30266
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2633
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 9.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12227
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

X-123615573-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24123615573
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24123615573
    reference: chr 0
allele count: 2
allele frequency: 5.263850506645611e-5
allele num: 37995
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000360171
  ensembl transcript: ENST00000371130
  gene symbol: TENM1
  hgvsc: ENST00000371130.3:c.3928+9T>C
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009694
  ensembl transcript: ENST00000461429
  gene symbol: TENM1
  hgvsc: ENST00000461429.1:n.382+9T>C
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000403954
  ensembl transcript: ENST00000422452
  gene symbol: TENM1
  hgvsc: ENST00000422452.2:c.3949+9T>C
  variant of: http://identifiers.org/hgnc/8117
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
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genotype depth: GenotypeDepth
  all individuals: 19
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1621
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 4199
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32164
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
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genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1777
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 357
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 173
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

X-123615573-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24123615573
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24123615573
    reference: chr 0
allele count: 21
allele frequency: 5.527043031977891e-4
allele num: 37995
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000360171
  ensembl transcript: ENST00000371130
  gene symbol: TENM1
  hgvsc: ENST00000371130.3:c.3928+9T>A
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009694
  ensembl transcript: ENST00000461429
  gene symbol: TENM1
  hgvsc: ENST00000461429.1:n.382+9T>A
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000403954
  ensembl transcript: ENST00000422452
  gene symbol: TENM1
  hgvsc: ENST00000422452.2:c.3949+9T>A
  variant of: http://identifiers.org/hgnc/8117
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 5443
  bin: 2.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 14411
  bin: 2.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1621
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 9.25e1
  variant carriers: 4
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ

X-123615575-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24123615575
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24123615575
    reference: chr 0
allele count: 4
allele frequency: 8.307890418925375e-5
allele num: 48147
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000403954
  ensembl transcript: ENST00000422452
  gene symbol: TENM1
  hgvsc: ENST00000422452.2:c.3949+7A>T
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009694
  ensembl transcript: ENST00000461429
  gene symbol: TENM1
  hgvsc: ENST00000461429.1:n.382+7A>T
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000360171
  ensembl transcript: ENST00000371130
  gene symbol: TENM1
  hgvsc: ENST00000371130.3:c.3928+7A>T
  variant of: http://identifiers.org/hgnc/8117
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1229
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2059
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  variant carriers: 2
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 700
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 4.25e1
  variant carriers: 0
hgvs: c.3949+7A>T
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

X-123615584-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24123615584
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24123615584
    reference: chr 0
allele count: 1
allele frequency: 1.285859404132752e-5
allele num: 77769
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000403954
  ensembl transcript: ENST00000422452
  gene symbol: TENM1
  hgvsc: ENST00000422452.2:c.3947G>A
  hgvsp: ENSP00000403954.2:p.Arg1316Gln
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000360171
  ensembl transcript: ENST00000371130
  gene symbol: TENM1
  hgvsc: ENST00000371130.3:c.3926G>A
  hgvsp: ENSP00000360171.3:p.Arg1309Gln
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000009694
  ensembl transcript: ENST00000461429
  gene symbol: TENM1
  hgvsc: ENST00000461429.1:n.380G>A
  variant of: http://identifiers.org/hgnc/8117
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8232
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 199
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg1316Gln
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

X-123615603-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24123615603
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24123615603
    reference: chr 0
allele count: 19
allele frequency: 2.191945178297436e-4
allele num: 86681
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000403954
  ensembl transcript: ENST00000422452
  gene symbol: TENM1
  hgvsc: ENST00000422452.2:c.3928G>A
  hgvsp: ENSP00000403954.2:p.Ala1310Thr
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000360171
  ensembl transcript: ENST00000371130
  gene symbol: TENM1
  hgvsc: ENST00000371130.3:c.3907G>A
  hgvsp: ENSP00000360171.3:p.Ala1303Thr
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000009694
  ensembl transcript: ENST00000461429
  gene symbol: TENM1
  hgvsc: ENST00000461429.1:n.361G>A
  variant of: http://identifiers.org/hgnc/8117
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Ala1310Thr
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

X-123615607-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24123615607
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24123615607
    reference: chr 0
allele count: 1
allele frequency: 1.149755676918655e-5
allele num: 86975
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000403954
  ensembl transcript: ENST00000422452
  gene symbol: TENM1
  hgvsc: ENST00000422452.2:c.3924G>A
  hgvsp: ENST00000422452.2:c.3924G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000360171
  ensembl transcript: ENST00000371130
  gene symbol: TENM1
  hgvsc: ENST00000371130.3:c.3903G>A
  hgvsp: ENST00000371130.3:c.3903G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000009694
  ensembl transcript: ENST00000461429
  gene symbol: TENM1
  hgvsc: ENST00000461429.1:n.357G>A
  variant of: http://identifiers.org/hgnc/8117
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Ser1308Ser
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

X-123615617-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24123615617
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24123615617
    reference: chr 0
allele count: 5
allele frequency: 5.721020172317128e-5
allele num: 87397
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000360171
  ensembl transcript: ENST00000371130
  gene symbol: TENM1
  hgvsc: ENST00000371130.3:c.3893G>A
  hgvsp: ENSP00000360171.3:p.Gly1298Glu
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000403954
  ensembl transcript: ENST00000422452
  gene symbol: TENM1
  hgvsc: ENST00000422452.2:c.3914G>A
  hgvsp: ENSP00000403954.2:p.Gly1305Glu
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000009694
  ensembl transcript: ENST00000461429
  gene symbol: TENM1
  hgvsc: ENST00000461429.1:n.347G>A
  variant of: http://identifiers.org/hgnc/8117
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Gly1305Glu
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

X-123615620-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24123615620
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24123615620
    reference: chr 0
allele count: 1
allele frequency: 1.143314468644601e-5
allele num: 87465
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000360171
  ensembl transcript: ENST00000371130
  gene symbol: TENM1
  hgvsc: ENST00000371130.3:c.3890G>A
  hgvsp: ENSP00000360171.3:p.Gly1297Asp
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000009694
  ensembl transcript: ENST00000461429
  gene symbol: TENM1
  hgvsc: ENST00000461429.1:n.344G>A
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000403954
  ensembl transcript: ENST00000422452
  gene symbol: TENM1
  hgvsc: ENST00000422452.2:c.3911G>A
  hgvsp: ENSP00000403954.2:p.Gly1304Asp
  variant of: http://identifiers.org/hgnc/8117
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6327
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50965
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 786
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gly1304Asp
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: QD

X-123615631-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24123615631
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24123615631
    reference: chr 0
allele count: 1
allele frequency: 1.141982710381765e-5
allele num: 87567
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000403954
  ensembl transcript: ENST00000422452
  gene symbol: TENM1
  hgvsc: ENST00000422452.2:c.3900T>C
  hgvsp: ENST00000422452.2:c.3900T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000009694
  ensembl transcript: ENST00000461429
  gene symbol: TENM1
  hgvsc: ENST00000461429.1:n.333T>C
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000360171
  ensembl transcript: ENST00000371130
  gene symbol: TENM1
  hgvsc: ENST00000371130.3:c.3879T>C
  hgvsp: ENST00000371130.3:c.3879T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8117
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49192
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 353
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 386
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51158
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genotype quality: GenotypeQuality
  all individuals: 1030
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 131
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genotype quality: GenotypeQuality
  all individuals: 162
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 399
  bin: 9.75e1
  variant carriers: 1
hgvs: p.His1300His
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: European (Finnish)
population: Latino
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

X-123615632-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24123615632
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24123615632
    reference: chr 0
allele count: 1
allele frequency: 1.141826236883271e-5
allele num: 87579
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000360171
  ensembl transcript: ENST00000371130
  gene symbol: TENM1
  hgvsc: ENST00000371130.3:c.3878A>G
  hgvsp: ENSP00000360171.3:p.His1293Arg
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000403954
  ensembl transcript: ENST00000422452
  gene symbol: TENM1
  hgvsc: ENST00000422452.2:c.3899A>G
  hgvsp: ENSP00000403954.2:p.His1300Arg
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000009694
  ensembl transcript: ENST00000461429
  gene symbol: TENM1
  hgvsc: ENST00000461429.1:n.332A>G
  variant of: http://identifiers.org/hgnc/8117
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49195
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 387
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 400
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6343
  bin: 6.75e1
  variant carriers: 0
hgvs: p.His1300Arg
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP
site quality: InbreedingCoeff

X-123615637-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24123615637
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24123615637
    reference: chr 0
allele count: 1
allele frequency: 1.141643738654915e-5
allele num: 87593
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000360171
  ensembl transcript: ENST00000371130
  gene symbol: TENM1
  hgvsc: ENST00000371130.3:c.3873G>C
  hgvsp: ENSP00000360171.3:p.Gln1291His
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000403954
  ensembl transcript: ENST00000422452
  gene symbol: TENM1
  hgvsc: ENST00000422452.2:c.3894G>C
  hgvsp: ENSP00000403954.2:p.Gln1298His
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000009694
  ensembl transcript: ENST00000461429
  gene symbol: TENM1
  hgvsc: ENST00000461429.1:n.327G>C
  variant of: http://identifiers.org/hgnc/8117
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8176
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 6.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 54
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 399
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gln1298His
num of homozygotes: 0
population: African
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: DP

X-123615638-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24123615638
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24123615638
    reference: chr 0
allele count: 5
allele frequency: 5.707827714928253e-5
allele num: 87599
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000403954
  ensembl transcript: ENST00000422452
  gene symbol: TENM1
  hgvsc: ENST00000422452.2:c.3893A>G
  hgvsp: ENSP00000403954.2:p.Gln1298Arg
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000009694
  ensembl transcript: ENST00000461429
  gene symbol: TENM1
  hgvsc: ENST00000461429.1:n.326A>G
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000360171
  ensembl transcript: ENST00000371130
  gene symbol: TENM1
  hgvsc: ENST00000371130.3:c.3872A>G
  hgvsp: ENSP00000360171.3:p.Gln1291Arg
  variant of: http://identifiers.org/hgnc/8117
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 49166
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 384
  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 773
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1027
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gln1298Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: African
population: South Asian
population: Latino
reference allele: T
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

X-123615638-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24123615638
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24123615638
    reference: chr 0
allele count: 2
allele frequency: 2.283131085971301e-5
allele num: 87599
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000009694
  ensembl transcript: ENST00000461429
  gene symbol: TENM1
  hgvsc: ENST00000461429.1:n.326A>T
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000403954
  ensembl transcript: ENST00000422452
  gene symbol: TENM1
  hgvsc: ENST00000422452.2:c.3893A>T
  hgvsp: ENSP00000403954.2:p.Gln1298Leu
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000360171
  ensembl transcript: ENST00000371130
  gene symbol: TENM1
  hgvsc: ENST00000371130.3:c.3872A>T
  hgvsp: ENSP00000360171.3:p.Gln1291Leu
  variant of: http://identifiers.org/hgnc/8117
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 49166
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 132
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Gln1298Leu
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

X-123615662-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24123615662
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24123615662
    reference: chr 0
allele count: 1
allele frequency: 1.140797189075726e-5
allele num: 87658
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000009694
  ensembl transcript: ENST00000461429
  gene symbol: TENM1
  hgvsc: ENST00000461429.1:n.302G>A
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000403954
  ensembl transcript: ENST00000422452
  gene symbol: TENM1
  hgvsc: ENST00000422452.2:c.3869G>A
  hgvsp: ENSP00000403954.2:p.Gly1290Asp
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000360171
  ensembl transcript: ENST00000371130
  gene symbol: TENM1
  hgvsc: ENST00000371130.3:c.3848G>A
  hgvsp: ENSP00000360171.3:p.Gly1283Asp
  variant of: http://identifiers.org/hgnc/8117
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 36
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genotype quality: GenotypeQuality
  all individuals: 385
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gly1290Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQ

X-123615665-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24123615665
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24123615665
    reference: chr 0
allele count: 1
allele frequency: 1.140823218034133e-5
allele num: 87656
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000403954
  ensembl transcript: ENST00000422452
  gene symbol: TENM1
  hgvsc: ENST00000422452.2:c.3866C>G
  hgvsp: ENSP00000403954.2:p.Thr1289Ser
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000360171
  ensembl transcript: ENST00000371130
  gene symbol: TENM1
  hgvsc: ENST00000371130.3:c.3845C>G
  hgvsp: ENSP00000360171.3:p.Thr1282Ser
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000009694
  ensembl transcript: ENST00000461429
  gene symbol: TENM1
  hgvsc: ENST00000461429.1:n.299C>G
  variant of: http://identifiers.org/hgnc/8117
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8325
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 132
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  variant carriers: 0
hgvs: p.Thr1289Ser
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

X-123615666-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24123615666
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24123615666
    reference: chr 0
allele count: 3
allele frequency: 3.422157327979559e-5
allele num: 87664
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000403954
  ensembl transcript: ENST00000422452
  gene symbol: TENM1
  hgvsc: ENST00000422452.2:c.3865A>G
  hgvsp: ENSP00000403954.2:p.Thr1289Ala
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000009694
  ensembl transcript: ENST00000461429
  gene symbol: TENM1
  hgvsc: ENST00000461429.1:n.298A>G
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000360171
  ensembl transcript: ENST00000371130
  gene symbol: TENM1
  hgvsc: ENST00000371130.3:c.3844A>G
  hgvsp: ENSP00000360171.3:p.Thr1282Ala
  variant of: http://identifiers.org/hgnc/8117
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Thr1289Ala
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

X-123615684-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24123615684
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24123615684
    reference: chr 0
allele count: 2
allele frequency: 2.280787784100628e-5
allele num: 87689
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000009694
  ensembl transcript: ENST00000461429
  gene symbol: TENM1
  hgvsc: ENST00000461429.1:n.280T>C
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000360171
  ensembl transcript: ENST00000371130
  gene symbol: TENM1
  hgvsc: ENST00000371130.3:c.3826T>C
  hgvsp: ENSP00000360171.3:p.Phe1276Leu
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000403954
  ensembl transcript: ENST00000422452
  gene symbol: TENM1
  hgvsc: ENST00000422452.2:c.3847T>C
  hgvsp: ENSP00000403954.2:p.Phe1283Leu
  variant of: http://identifiers.org/hgnc/8117
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 49046
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8380
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 65
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 12
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genotype depth: GenotypeDepth
  all individuals: 350
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
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genotype depth: GenotypeDepth
  all individuals: 86
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genotype depth: GenotypeDepth
  all individuals: 18
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genotype depth: GenotypeDepth
  all individuals: 22
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 130
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 12
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 17
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 72
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1026
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Phe1283Leu
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ

X-123615690-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24123615690
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24123615690
    reference: chr 0
allele count: 1
allele frequency: 1.140393892050314e-5
allele num: 87689
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000360171
  ensembl transcript: ENST00000371130
  gene symbol: TENM1
  hgvsc: ENST00000371130.3:c.3820A>G
  hgvsp: ENSP00000360171.3:p.Lys1274Glu
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000403954
  ensembl transcript: ENST00000422452
  gene symbol: TENM1
  hgvsc: ENST00000422452.2:c.3841A>G
  hgvsp: ENSP00000403954.2:p.Lys1281Glu
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000009694
  ensembl transcript: ENST00000461429
  gene symbol: TENM1
  hgvsc: ENST00000461429.1:n.274A>G
  variant of: http://identifiers.org/hgnc/8117
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2339
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
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genotype depth: GenotypeDepth
  all individuals: 8381
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 350
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 86
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 399
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 51341
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Lys1281Glu
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

X-123615697-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24123615697
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24123615697
    reference: chr 0
allele count: 1
allele frequency: 1.140341874493973e-5
allele num: 87693
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000360171
  ensembl transcript: ENST00000371130
  gene symbol: TENM1
  hgvsc: ENST00000371130.3:c.3813T>A
  hgvsp: ENSP00000360171.3:p.Asp1271Glu
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000403954
  ensembl transcript: ENST00000422452
  gene symbol: TENM1
  hgvsc: ENST00000422452.2:c.3834T>A
  hgvsp: ENSP00000403954.2:p.Asp1278Glu
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000009694
  ensembl transcript: ENST00000461429
  gene symbol: TENM1
  hgvsc: ENST00000461429.1:n.267T>A
  variant of: http://identifiers.org/hgnc/8117
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49042
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 162
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genotype quality: GenotypeQuality
  all individuals: 1027
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  variant carriers: 0
hgvs: p.Asp1278Glu
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
reference allele: A
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum

X-123615703-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24123615703
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24123615703
    reference: chr 0
allele count: 3
allele frequency: 3.421259707824421e-5
allele num: 87687
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000360171
  ensembl transcript: ENST00000371130
  gene symbol: TENM1
  hgvsc: ENST00000371130.3:c.3807G>A
  hgvsp: ENST00000371130.3:c.3807G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000009694
  ensembl transcript: ENST00000461429
  gene symbol: TENM1
  hgvsc: ENST00000461429.1:n.261G>A
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000403954
  ensembl transcript: ENST00000422452
  gene symbol: TENM1
  hgvsc: ENST00000422452.2:c.3828G>A
  hgvsp: ENST00000422452.2:c.3828G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8117
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 49033
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 162
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  variant carriers: 0
hgvs: p.Thr1276Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
population: African
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQRankSum

X-123615704-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24123615704
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24123615704
    reference: chr 0
allele count: 11
allele frequency: 1.254533427613421e-4
allele num: 87682
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000360171
  ensembl transcript: ENST00000371130
  gene symbol: TENM1
  hgvsc: ENST00000371130.3:c.3806C>T
  hgvsp: ENSP00000360171.3:p.Thr1269Met
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000009694
  ensembl transcript: ENST00000461429
  gene symbol: TENM1
  hgvsc: ENST00000461429.1:n.260C>T
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000403954
  ensembl transcript: ENST00000422452
  gene symbol: TENM1
  hgvsc: ENST00000422452.2:c.3827C>T
  hgvsp: ENSP00000403954.2:p.Thr1276Met
  variant of: http://identifiers.org/hgnc/8117
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2345
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8395
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 49020
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 9.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
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genotype quality: GenotypeQuality
  all individuals: 8
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51321
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 1024
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6323
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 763
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Thr1276Met
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

X-123615704-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24123615704
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24123615704
    reference: chr 0
allele count: 1
allele frequency: 1.140484934194019e-5
allele num: 87682
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000403954
  ensembl transcript: ENST00000422452
  gene symbol: TENM1
  hgvsc: ENST00000422452.2:c.3827C>A
  hgvsp: ENSP00000403954.2:p.Thr1276Lys
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000360171
  ensembl transcript: ENST00000371130
  gene symbol: TENM1
  hgvsc: ENST00000371130.3:c.3806C>A
  hgvsp: ENSP00000360171.3:p.Thr1269Lys
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000009694
  ensembl transcript: ENST00000461429
  gene symbol: TENM1
  hgvsc: ENST00000461429.1:n.260C>A
  variant of: http://identifiers.org/hgnc/8117
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 49020
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
  all individuals: 20
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 1
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
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genotype quality: GenotypeQuality
  all individuals: 6323
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 8
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Thr1276Lys
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

X-123615705-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24123615705
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24123615705
    reference: chr 0
allele count: 4
allele frequency: 4.561679610432562e-5
allele num: 87687
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000360171
  ensembl transcript: ENST00000371130
  gene symbol: TENM1
  hgvsc: ENST00000371130.3:c.3805A>G
  hgvsp: ENSP00000360171.3:p.Thr1269Ala
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000403954
  ensembl transcript: ENST00000422452
  gene symbol: TENM1
  hgvsc: ENST00000422452.2:c.3826A>G
  hgvsp: ENSP00000403954.2:p.Thr1276Ala
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000009694
  ensembl transcript: ENST00000461429
  gene symbol: TENM1
  hgvsc: ENST00000461429.1:n.259A>G
  variant of: http://identifiers.org/hgnc/8117
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 22
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 19
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 86
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
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  variant carriers: 0
hgvs: p.Thr1276Ala
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD

X-123615712-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24123615712
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24123615712
    reference: chr 0
allele count: 1
allele frequency: 1.14041990260814e-5
allele num: 87687
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000009694
  ensembl transcript: ENST00000461429
  gene symbol: TENM1
  hgvsc: ENST00000461429.1:n.252T>C
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000403954
  ensembl transcript: ENST00000422452
  gene symbol: TENM1
  hgvsc: ENST00000422452.2:c.3819T>C
  hgvsp: ENST00000422452.2:c.3819T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000360171
  ensembl transcript: ENST00000371130
  gene symbol: TENM1
  hgvsc: ENST00000371130.3:c.3798T>C
  hgvsp: ENST00000371130.3:c.3798T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8117
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8409
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2347
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 22
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genotype depth: GenotypeDepth
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  bin: 9.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 381
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Leu1273Leu
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

X-123615716-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24123615716
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24123615716
    reference: chr 0
allele count: 3
allele frequency: 3.421220691542742e-5
allele num: 87688
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000360171
  ensembl transcript: ENST00000371130
  gene symbol: TENM1
  hgvsc: ENST00000371130.3:c.3794C>A
  hgvsp: ENSP00000360171.3:p.Ser1265Tyr
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000009694
  ensembl transcript: ENST00000461429
  gene symbol: TENM1
  hgvsc: ENST00000461429.1:n.248C>A
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000403954
  ensembl transcript: ENST00000422452
  gene symbol: TENM1
  hgvsc: ENST00000422452.2:c.3815C>A
  hgvsp: ENSP00000403954.2:p.Ser1272Tyr
  variant of: http://identifiers.org/hgnc/8117
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8412
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 56
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  variant carriers: 2
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 5.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 9.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 381
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 2.25e1
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 762
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1026
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ser1272Tyr
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ

X-123615725-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24123615725
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24123615725
    reference: chr 0
allele count: 3
allele frequency: 3.421337743057535e-5
allele num: 87685
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000360171
  ensembl transcript: ENST00000371130
  gene symbol: TENM1
  hgvsc: ENST00000371130.3:c.3785A>G
  hgvsp: ENSP00000360171.3:p.Lys1262Arg
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000009694
  ensembl transcript: ENST00000461429
  gene symbol: TENM1
  hgvsc: ENST00000461429.1:n.239A>G
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000403954
  ensembl transcript: ENST00000422452
  gene symbol: TENM1
  hgvsc: ENST00000422452.2:c.3806A>G
  hgvsp: ENSP00000403954.2:p.Lys1269Arg
  variant of: http://identifiers.org/hgnc/8117
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 48987
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
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genotype depth: GenotypeDepth
  all individuals: 22
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 20
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 16
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Lys1269Arg
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum

X-123615754-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24123615754
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24123615754
    reference: chr 0
allele count: 2
allele frequency: 2.282479685930795e-5
allele num: 87624
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000403954
  ensembl transcript: ENST00000422452
  gene symbol: TENM1
  hgvsc: ENST00000422452.2:c.3777A>G
  hgvsp: ENST00000422452.2:c.3777A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000360171
  ensembl transcript: ENST00000371130
  gene symbol: TENM1
  hgvsc: ENST00000371130.3:c.3756A>G
  hgvsp: ENST00000371130.3:c.3756A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000009694
  ensembl transcript: ENST00000461429
  gene symbol: TENM1
  hgvsc: ENST00000461429.1:n.210A>G
  variant of: http://identifiers.org/hgnc/8117
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 22
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 11
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  variant carriers: 0
hgvs: p.Leu1259Leu
num of homozygotes: 0
population: African
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ReadPosRankSum

X-123615767-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24123615767
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24123615767
    reference: chr 0
allele count: 1
allele frequency: 1.142791840466259e-5
allele num: 87505
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000403954
  ensembl transcript: ENST00000422452
  gene symbol: TENM1
  hgvsc: ENST00000422452.2:c.3764A>C
  hgvsp: ENSP00000403954.2:p.Glu1255Ala
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000360171
  ensembl transcript: ENST00000371130
  gene symbol: TENM1
  hgvsc: ENST00000371130.3:c.3743A>C
  hgvsp: ENSP00000360171.3:p.Glu1248Ala
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000009694
  ensembl transcript: ENST00000461429
  gene symbol: TENM1
  hgvsc: ENST00000461429.1:n.197A>C
  variant of: http://identifiers.org/hgnc/8117
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 212
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 160
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genotype quality: GenotypeQuality
  all individuals: 754
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Glu1255Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
reference allele: T
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQ

X-123615772-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24123615772
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24123615772
    reference: chr 0
allele count: 1
allele frequency: 1.14417785100516e-5
allele num: 87399
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000403954
  ensembl transcript: ENST00000422452
  gene symbol: TENM1
  hgvsc: ENST00000422452.2:c.3759G>T
  hgvsp: ENST00000422452.2:c.3759G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000360171
  ensembl transcript: ENST00000371130
  gene symbol: TENM1
  hgvsc: ENST00000371130.3:c.3738G>T
  hgvsp: ENST00000371130.3:c.3738G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000009694
  ensembl transcript: ENST00000461429
  gene symbol: TENM1
  hgvsc: ENST00000461429.1:n.192G>T
  variant of: http://identifiers.org/hgnc/8117
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1003
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Val1253Val
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

X-123615800-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24123615800
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24123615800
    reference: chr 0
allele count: 1
allele frequency: 1.156323354262786e-5
allele num: 86481
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000403954
  ensembl transcript: ENST00000422452
  gene symbol: TENM1
  hgvsc: ENST00000422452.2:c.3731A>G
  hgvsp: ENSP00000403954.2:p.His1244Arg
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000360171
  ensembl transcript: ENST00000371130
  gene symbol: TENM1
  hgvsc: ENST00000371130.3:c.3710A>G
  hgvsp: ENSP00000360171.3:p.His1237Arg
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000009694
  ensembl transcript: ENST00000461429
  gene symbol: TENM1
  hgvsc: ENST00000461429.1:n.164A>G
  variant of: http://identifiers.org/hgnc/8117
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 47235
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 401
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 727
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  variant carriers: 0
hgvs: p.His1244Arg
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum

X-123615802-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24123615802
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24123615802
    reference: chr 0
allele count: 38
allele frequency: 4.397791845568067e-4
allele num: 86407
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000009694
  ensembl transcript: ENST00000461429
  gene symbol: TENM1
  hgvsc: ENST00000461429.1:n.162T>A
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000360171
  ensembl transcript: ENST00000371130
  gene symbol: TENM1
  hgvsc: ENST00000371130.3:c.3708T>A
  hgvsp: ENST00000371130.3:c.3708T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000403954
  ensembl transcript: ENST00000422452
  gene symbol: TENM1
  hgvsc: ENST00000422452.2:c.3729T>A
  hgvsp: ENST00000422452.2:c.3729T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8117
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1205
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 4
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2204
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genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala1243Ala
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQ

X-123615803-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24123615803
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24123615803
    reference: chr 0
allele count: 1
allele frequency: 1.15811782690771e-5
allele num: 86347
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000403954
  ensembl transcript: ENST00000422452
  gene symbol: TENM1
  hgvsc: ENST00000422452.2:c.3728C>A
  hgvsp: ENSP00000403954.2:p.Ala1243Asp
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000009694
  ensembl transcript: ENST00000461429
  gene symbol: TENM1
  hgvsc: ENST00000461429.1:n.161C>A
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000360171
  ensembl transcript: ENST00000371130
  gene symbol: TENM1
  hgvsc: ENST00000371130.3:c.3707C>A
  hgvsp: ENSP00000360171.3:p.Ala1236Asp
  variant of: http://identifiers.org/hgnc/8117
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 46968
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 99
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genotype quality: GenotypeQuality
  all individuals: 726
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ala1243Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQ

X-123615807-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24123615807
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24123615807
    reference: chr 0
allele count: 141
allele frequency: 1.638829805781234e-3
allele num: 86037
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000360171
  ensembl transcript: ENST00000371130
  gene symbol: TENM1
  hgvsc: ENST00000371130.3:c.3703C>T
  hgvsp: ENSP00000360171.3:p.Pro1235Ser
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000403954
  ensembl transcript: ENST00000422452
  gene symbol: TENM1
  hgvsc: ENST00000422452.2:c.3724C>T
  hgvsp: ENSP00000403954.2:p.Pro1242Ser
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000009694
  ensembl transcript: ENST00000461429
  gene symbol: TENM1
  hgvsc: ENST00000461429.1:n.157C>T
  variant of: http://identifiers.org/hgnc/8117
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 4.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7636
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 29
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  variant carriers: 6
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 7.5e0
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genotype depth: GenotypeDepth
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  bin: 5.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 45
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 950
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 2.75e1
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genotype quality: GenotypeQuality
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  bin: 8.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 366
  bin: 8.25e1
  variant carriers: 3
hgvs: p.Pro1242Ser
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

X-123615807-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24123615807
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24123615807
    reference: chr 0
allele count: 1
allele frequency: 1.162290642398038e-5
allele num: 86037
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000403954
  ensembl transcript: ENST00000422452
  gene symbol: TENM1
  hgvsc: ENST00000422452.2:c.3724C>A
  hgvsp: ENSP00000403954.2:p.Pro1242Thr
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000009694
  ensembl transcript: ENST00000461429
  gene symbol: TENM1
  hgvsc: ENST00000461429.1:n.157C>A
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000360171
  ensembl transcript: ENST00000371130
  gene symbol: TENM1
  hgvsc: ENST00000371130.3:c.3703C>A
  hgvsp: ENSP00000360171.3:p.Pro1235Thr
  variant of: http://identifiers.org/hgnc/8117
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 75
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Pro1242Thr
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: VQSLOD

X-123615823-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24123615823
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24123615823
    reference: chr 0
allele count: 1
allele frequency: 1.187281836962458e-5
allele num: 84226
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000360171
  ensembl transcript: ENST00000371130
  gene symbol: TENM1
  hgvsc: ENST00000371130.3:c.3696-9C>G
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009694
  ensembl transcript: ENST00000461429
  gene symbol: TENM1
  hgvsc: ENST00000461429.1:n.150-9C>G
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000403954
  ensembl transcript: ENST00000422452
  gene symbol: TENM1
  hgvsc: ENST00000422452.2:c.3717-9C>G
  variant of: http://identifiers.org/hgnc/8117
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2896
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2070
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 360
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: QD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD

X-123615841-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24123615841
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24123615841
    reference: chr 0
allele count: 1
allele frequency: 1.222434110801428e-5
allele num: 81804
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009694
  ensembl transcript: ENST00000461429
  gene symbol: TENM1
  hgvsc: ENST00000461429.1:n.150-27G>T
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000360171
  ensembl transcript: ENST00000371130
  gene symbol: TENM1
  hgvsc: ENST00000371130.3:c.3696-27G>T
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000403954
  ensembl transcript: ENST00000422452
  gene symbol: TENM1
  hgvsc: ENST00000422452.2:c.3717-27G>T
  variant of: http://identifiers.org/hgnc/8117
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 416
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  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum

X-123615843-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24123615843
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24123615843
    reference: chr 0
allele count: 1
allele frequency: 1.224379851605162e-5
allele num: 81674
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009694
  ensembl transcript: ENST00000461429
  gene symbol: TENM1
  hgvsc: ENST00000461429.1:n.150-29T>G
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000360171
  ensembl transcript: ENST00000371130
  gene symbol: TENM1
  hgvsc: ENST00000371130.3:c.3696-29T>G
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000403954
  ensembl transcript: ENST00000422452
  gene symbol: TENM1
  hgvsc: ENST00000422452.2:c.3717-29T>G
  variant of: http://identifiers.org/hgnc/8117
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1621
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: A
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP
site quality: ReadPosRankSum
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X-123615845-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24123615845
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24123615845
    reference: chr 0
allele count: 1
allele frequency: 1.230345234872905e-5
allele num: 81278
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009694
  ensembl transcript: ENST00000461429
  gene symbol: TENM1
  hgvsc: ENST00000461429.1:n.150-31C>A
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000360171
  ensembl transcript: ENST00000371130
  gene symbol: TENM1
  hgvsc: ENST00000371130.3:c.3696-31C>A
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: true
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  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000403954
  ensembl transcript: ENST00000422452
  gene symbol: TENM1
  hgvsc: ENST00000422452.2:c.3717-31C>A
  variant of: http://identifiers.org/hgnc/8117
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
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site quality: DP
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X-123615859-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24123615859
    reference: chr 0
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    type: ExactPosition
    position: 24123615859
    reference: chr 0
allele count: 1
allele frequency: 1.280016384209718e-5
allele num: 78124
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000360171
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  gene symbol: TENM1
  hgvsc: ENST00000371130.3:c.3696-45G>T
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
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  ensembl gene: ENSG00000009694
  ensembl transcript: ENST00000461429
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  hgvsc: ENST00000461429.1:n.150-45G>T
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
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  ensembl gene: ENSG00000009694
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  gene symbol: TENM1
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  variant of: http://identifiers.org/hgnc/8117
canonical: true
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Other
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population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
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site quality: FS
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X-123615863-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24123615863
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24123615863
    reference: chr 0
allele count: 1
allele frequency: 1.297757475083057e-5
allele num: 77056
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000403954
  ensembl transcript: ENST00000422452
  gene symbol: TENM1
  hgvsc: ENST00000422452.2:c.3717-49G>A
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000360171
  ensembl transcript: ENST00000371130
  gene symbol: TENM1
  hgvsc: ENST00000371130.3:c.3696-49G>A
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
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  consequence: non_coding_transcript_variant
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  ensembl gene: ENSG00000009694
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  gene symbol: TENM1
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  variant of: http://identifiers.org/hgnc/8117
canonical: true
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: DP
site quality: BaseQRankSum
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site quality: InbreedingCoeff
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X-123615865-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24123615865
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24123615865
    reference: chr 0
allele count: 1
allele frequency: 1.307907609406472e-5
allele num: 76458
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000403954
  ensembl transcript: ENST00000422452
  gene symbol: TENM1
  hgvsc: ENST00000422452.2:c.3717-51G>A
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000360171
  ensembl transcript: ENST00000371130
  gene symbol: TENM1
  hgvsc: ENST00000371130.3:c.3696-51G>A
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
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  ensembl gene: ENSG00000009694
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  gene symbol: TENM1
  hgvsc: ENST00000461429.1:n.150-51G>A
  variant of: http://identifiers.org/hgnc/8117
canonical: true
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2904
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5484
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7558
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3162
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13909
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 662
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 780
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4006
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Other
population: Latino
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: QD

X-123621035-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24123621035
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24123621035
    reference: chr 0
allele count: 126
allele frequency: 9.316081330868762e-3
allele num: 13525
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000360171
  ensembl transcript: ENST00000371130
  gene symbol: TENM1
  hgvsc: ENST00000371130.3:c.3696-5221A>G
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000403954
  ensembl transcript: ENST00000422452
  gene symbol: TENM1
  hgvsc: ENST00000422452.2:c.3716+24A>G
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009694
  ensembl transcript: ENST00000461429
  gene symbol: TENM1
  hgvsc: ENST00000461429.1:n.149+24A>G
  variant of: http://identifiers.org/hgnc/8117
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 3.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 1.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 2311
  bin: 2.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 2.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 1.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 4.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 4.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1988
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 5.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 4.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 890
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 966
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 8.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 4.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3682
  bin: 9.75e1
  variant carriers: 69
genotype quality: GenotypeQuality
  all individuals: 2817
  bin: 6.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 5.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 7.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 6.75e1
  variant carriers: 8
num of homozygotes: 2
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ

X-123621055-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24123621055
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24123621055
    reference: chr 0
allele count: 1
allele frequency: 7.30887297178775e-5
allele num: 13682
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000360171
  ensembl transcript: ENST00000371130
  gene symbol: TENM1
  hgvsc: ENST00000371130.3:c.3696-5241A>C
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000403954
  ensembl transcript: ENST00000422452
  gene symbol: TENM1
  hgvsc: ENST00000422452.2:c.3716+4A>C
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009694
  ensembl transcript: ENST00000461429
  gene symbol: TENM1
  hgvsc: ENST00000461429.1:n.149+4A>C
  variant of: http://identifiers.org/hgnc/8117
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3010
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1986
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3628
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3698
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 848
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 842
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.75e1
  variant carriers: 0
hgvs: c.3716+4A>C
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: African
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: QD
site quality: ReadPosRankSum

X-123621061-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24123621061
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24123621061
    reference: chr 0
allele count: 1
allele frequency: 7.30033581544751e-5
allele num: 13698
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000403954
  ensembl transcript: ENST00000422452
  gene symbol: TENM1
  hgvsc: ENST00000422452.2:c.3714T>C
  hgvsp: ENST00000422452.2:c.3714T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000360171
  ensembl transcript: ENST00000371130
  gene symbol: TENM1
  hgvsc: ENST00000371130.3:c.3696-5247T>C
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000009694
  ensembl transcript: ENST00000461429
  gene symbol: TENM1
  hgvsc: ENST00000461429.1:n.147T>C
  variant of: http://identifiers.org/hgnc/8117
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1986
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2999
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 858
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3628
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 817
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 484
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 7.75e1
  variant carriers: 0
hgvs: c.3714T>C
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

X-123621084-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24123621084
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24123621084
    reference: chr 0
allele count: 1
allele frequency: 7.339449541284403e-5
allele num: 13625
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009694
  ensembl transcript: ENST00000461429
  gene symbol: TENM1
  hgvsc: ENST00000461429.1:n.129-5C>T
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000360171
  ensembl transcript: ENST00000371130
  gene symbol: TENM1
  hgvsc: ENST00000371130.3:c.3696-5270C>T
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000403954
  ensembl transcript: ENST00000422452
  gene symbol: TENM1
  hgvsc: ENST00000422452.2:c.3696-5C>T
  variant of: http://identifiers.org/hgnc/8117
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1986
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2385
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1198
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 816
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3628
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3106
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 7.25e1
  variant carriers: 0
hgvs: c.3696-5C>T
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: FS
site quality: MQ

X-123630834-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24123630834
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24123630834
    reference: chr 0
allele count: 1
allele frequency: 1.217730150998539e-5
allele num: 82120
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009694
  ensembl transcript: ENST00000461429
  gene symbol: TENM1
  hgvsc: ENST00000461429.1:n.128+32T>C
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000360171
  ensembl transcript: ENST00000371130
  gene symbol: TENM1
  hgvsc: ENST00000371130.3:c.3695+32T>C
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000403954
  ensembl transcript: ENST00000422452
  gene symbol: TENM1
  hgvsc: ENST00000422452.2:c.3695+32T>C
  variant of: http://identifiers.org/hgnc/8117
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20510
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3314
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3882
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5351
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23373
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1654
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 785
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1009
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1490
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 620
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3859
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1449
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6915
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37821
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 918
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD

X-123630845-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24123630845
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24123630845
    reference: chr 0
allele count: 4
allele frequency: 4.832493687555121e-5
allele num: 82773
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009694
  ensembl transcript: ENST00000461429
  gene symbol: TENM1
  hgvsc: ENST00000461429.1:n.128+21A>G
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000360171
  ensembl transcript: ENST00000371130
  gene symbol: TENM1
  hgvsc: ENST00000371130.3:c.3695+21A>G
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000403954
  ensembl transcript: ENST00000422452
  gene symbol: TENM1
  hgvsc: ENST00000422452.2:c.3695+21A>G
  variant of: http://identifiers.org/hgnc/8117
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22162
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3619
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5406
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2323
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39402
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 794
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 599
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1449
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1675
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1041
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD

X-123630850-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24123630850
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24123630850
    reference: chr 0
allele count: 37
allele frequency: 4.446687818478993e-4
allele num: 83208
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000360171
  ensembl transcript: ENST00000371130
  gene symbol: TENM1
  hgvsc: ENST00000371130.3:c.3695+16T>C
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000403954
  ensembl transcript: ENST00000422452
  gene symbol: TENM1
  hgvsc: ENST00000422452.2:c.3695+16T>C
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009694
  ensembl transcript: ENST00000461429
  gene symbol: TENM1
  hgvsc: ENST00000461429.1:n.128+16T>C
  variant of: http://identifiers.org/hgnc/8117
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1979
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3369
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5429
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 22718
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 23931
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1685
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40451
  bin: 6.25e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: DP

X-123630855-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24123630855
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24123630855
    reference: chr 0
allele count: 47
allele frequency: 5.613817156780775e-4
allele num: 83722
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000403954
  ensembl transcript: ENST00000422452
  gene symbol: TENM1
  hgvsc: ENST00000422452.2:c.3695+11T>C
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000360171
  ensembl transcript: ENST00000371130
  gene symbol: TENM1
  hgvsc: ENST00000371130.3:c.3695+11T>C
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009694
  ensembl transcript: ENST00000461429
  gene symbol: TENM1
  hgvsc: ENST00000461429.1:n.128+11T>C
  variant of: http://identifiers.org/hgnc/8117
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1612
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 9.25e1
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genotype depth: GenotypeDepth
  all individuals: 23473
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 3.25e1
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genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
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  variant carriers: 2
genotype depth: GenotypeDepth
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  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 676
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1688
  bin: 7.75e1
  variant carriers: 3
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum

X-123630860-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24123630860
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24123630860
    reference: chr 0
allele count: 6
allele frequency: 7.113977780676065e-5
allele num: 84341
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009694
  ensembl transcript: ENST00000461429
  gene symbol: TENM1
  hgvsc: ENST00000461429.1:n.128+6T>A
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000360171
  ensembl transcript: ENST00000371130
  gene symbol: TENM1
  hgvsc: ENST00000371130.3:c.3695+6T>A
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000403954
  ensembl transcript: ENST00000422452
  gene symbol: TENM1
  hgvsc: ENST00000422452.2:c.3695+6T>A
  variant of: http://identifiers.org/hgnc/8117
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5483
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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  bin: 5.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1698
  bin: 7.75e1
  variant carriers: 0
hgvs: c.3695+6T>A
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

X-123630879-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24123630879
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24123630879
    reference: chr 0
allele count: 5
allele frequency: 5.816320595591229e-5
allele num: 85965
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000403954
  ensembl transcript: ENST00000422452
  gene symbol: TENM1
  hgvsc: ENST00000422452.2:c.3682A>G
  hgvsp: ENSP00000403954.2:p.Ile1228Val
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000009694
  ensembl transcript: ENST00000461429
  gene symbol: TENM1
  hgvsc: ENST00000461429.1:n.115A>G
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000360171
  ensembl transcript: ENST00000371130
  gene symbol: TENM1
  hgvsc: ENST00000371130.3:c.3682A>G
  hgvsp: ENSP00000360171.3:p.Ile1228Val
  variant of: http://identifiers.org/hgnc/8117
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ile1228Val
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: QD
site quality: ReadPosRankSum

X-123630885-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24123630885
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24123630885
    reference: chr 0
allele count: 5
allele frequency: 5.795824687894841e-5
allele num: 86269
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000360171
  ensembl transcript: ENST00000371130
  gene symbol: TENM1
  hgvsc: ENST00000371130.3:c.3676G>A
  hgvsp: ENSP00000360171.3:p.Val1226Ile
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000009694
  ensembl transcript: ENST00000461429
  gene symbol: TENM1
  hgvsc: ENST00000461429.1:n.109G>A
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000403954
  ensembl transcript: ENST00000422452
  gene symbol: TENM1
  hgvsc: ENST00000422452.2:c.3676G>A
  hgvsp: ENSP00000403954.2:p.Val1226Ile
  variant of: http://identifiers.org/hgnc/8117
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25251
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 260
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Val1226Ile
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: African
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

X-123630895-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24123630895
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24123630895
    reference: chr 0
allele count: 25
allele frequency: 2.885103632922494e-4
allele num: 86652
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000403954
  ensembl transcript: ENST00000422452
  gene symbol: TENM1
  hgvsc: ENST00000422452.2:c.3666G>A
  hgvsp: ENST00000422452.2:c.3666G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000360171
  ensembl transcript: ENST00000371130
  gene symbol: TENM1
  hgvsc: ENST00000371130.3:c.3666G>A
  hgvsp: ENST00000371130.3:c.3666G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000009694
  ensembl transcript: ENST00000461429
  gene symbol: TENM1
  hgvsc: ENST00000461429.1:n.99G>A
  variant of: http://identifiers.org/hgnc/8117
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 178
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  variant carriers: 3
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 180
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7447
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ser1222Ser
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

X-123630896-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24123630896
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24123630896
    reference: chr 0
allele count: 3
allele frequency: 3.459968168292851e-5
allele num: 86706
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000403954
  ensembl transcript: ENST00000422452
  gene symbol: TENM1
  hgvsc: ENST00000422452.2:c.3665C>T
  hgvsp: ENSP00000403954.2:p.Ser1222Leu
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000009694
  ensembl transcript: ENST00000461429
  gene symbol: TENM1
  hgvsc: ENST00000461429.1:n.98C>T
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000360171
  ensembl transcript: ENST00000371130
  gene symbol: TENM1
  hgvsc: ENST00000371130.3:c.3665C>T
  hgvsp: ENSP00000360171.3:p.Ser1222Leu
  variant of: http://identifiers.org/hgnc/8117
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25410
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
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genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25534
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
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genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5631
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44494
  bin: 6.25e1
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.75e1
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genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1703
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ser1222Leu
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD

X-123630906-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24123630906
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24123630906
    reference: chr 0
allele count: 142
allele frequency: 1.63558668033495e-3
allele num: 86819
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000360171
  ensembl transcript: ENST00000371130
  gene symbol: TENM1
  hgvsc: ENST00000371130.3:c.3655A>G
  hgvsp: ENSP00000360171.3:p.Ile1219Val
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000009694
  ensembl transcript: ENST00000461429
  gene symbol: TENM1
  hgvsc: ENST00000461429.1:n.88A>G
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000403954
  ensembl transcript: ENST00000422452
  gene symbol: TENM1
  hgvsc: ENST00000422452.2:c.3655A>G
  hgvsp: ENSP00000403954.2:p.Ile1219Val
  variant of: http://identifiers.org/hgnc/8117
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5596
  bin: 3.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
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  variant carriers: 11
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 55
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 9.25e1
  variant carriers: 1
hgvs: p.Ile1219Val
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: African
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum

X-123630915-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24123630915
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24123630915
    reference: chr 0
allele count: 35
allele frequency: 4.03249035082666e-4
allele num: 86795
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000009694
  ensembl transcript: ENST00000461429
  gene symbol: TENM1
  hgvsc: ENST00000461429.1:n.79G>A
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000403954
  ensembl transcript: ENST00000422452
  gene symbol: TENM1
  hgvsc: ENST00000422452.2:c.3646G>A
  hgvsp: ENSP00000403954.2:p.Val1216Ile
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000360171
  ensembl transcript: ENST00000371130
  gene symbol: TENM1
  hgvsc: ENST00000371130.3:c.3646G>A
  hgvsp: ENSP00000360171.3:p.Val1216Ile
  variant of: http://identifiers.org/hgnc/8117
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 365
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  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 54
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 2
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 262
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  variant carriers: 11
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 38
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 150
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  variant carriers: 0
hgvs: p.Val1216Ile
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: DP

X-123630928-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24123630928
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24123630928
    reference: chr 0
allele count: 1
allele frequency: 1.153788464422933e-5
allele num: 86671
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000009694
  ensembl transcript: ENST00000461429
  gene symbol: TENM1
  hgvsc: ENST00000461429.1:n.66C>T
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000360171
  ensembl transcript: ENST00000371130
  gene symbol: TENM1
  hgvsc: ENST00000371130.3:c.3633C>T
  hgvsp: ENST00000371130.3:c.3633C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000403954
  ensembl transcript: ENST00000422452
  gene symbol: TENM1
  hgvsc: ENST00000422452.2:c.3633C>T
  hgvsp: ENST00000422452.2:c.3633C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8117
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24606
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 252
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 395
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 744
  bin: 8.25e1
  variant carriers: 1
hgvs: p.Gly1211Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: DP

X-123630940-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24123630940
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24123630940
    reference: chr 0
allele count: 4
allele frequency: 4.62064504204787e-5
allele num: 86568
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000360171
  ensembl transcript: ENST00000371130
  gene symbol: TENM1
  hgvsc: ENST00000371130.3:c.3621T>C
  hgvsp: ENST00000371130.3:c.3621T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000009694
  ensembl transcript: ENST00000461429
  gene symbol: TENM1
  hgvsc: ENST00000461429.1:n.54T>C
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000403954
  ensembl transcript: ENST00000422452
  gene symbol: TENM1
  hgvsc: ENST00000422452.2:c.3621T>C
  hgvsp: ENST00000422452.2:c.3621T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8117
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25368
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Ser1207Ser
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: FS

X-123630966-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24123630966
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24123630966
    reference: chr 0
allele count: 5
allele frequency: 5.818351079304125e-5
allele num: 85935
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000403954
  ensembl transcript: ENST00000422452
  gene symbol: TENM1
  hgvsc: ENST00000422452.2:c.3595G>A
  hgvsp: ENSP00000403954.2:p.Ala1199Thr
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000009694
  ensembl transcript: ENST00000461429
  gene symbol: TENM1
  hgvsc: ENST00000461429.1:n.28G>A
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000360171
  ensembl transcript: ENST00000371130
  gene symbol: TENM1
  hgvsc: ENST00000371130.3:c.3595G>A
  hgvsp: ENSP00000360171.3:p.Ala1199Thr
  variant of: http://identifiers.org/hgnc/8117
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 140
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Ala1199Thr
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: FS

X-123630967-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24123630967
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24123630967
    reference: chr 0
allele count: 2
allele frequency: 2.327557112432646e-5
allele num: 85927
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000360171
  ensembl transcript: ENST00000371130
  gene symbol: TENM1
  hgvsc: ENST00000371130.3:c.3594C>T
  hgvsp: ENST00000371130.3:c.3594C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000403954
  ensembl transcript: ENST00000422452
  gene symbol: TENM1
  hgvsc: ENST00000422452.2:c.3594C>T
  hgvsp: ENST00000422452.2:c.3594C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000009694
  ensembl transcript: ENST00000461429
  gene symbol: TENM1
  hgvsc: ENST00000461429.1:n.27C>T
  variant of: http://identifiers.org/hgnc/8117
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 54
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Val1198Val
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum

X-123630975-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24123630975
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24123630975
    reference: chr 0
allele count: 1
allele frequency: 1.166221558771735e-5
allele num: 85747
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000360171
  ensembl transcript: ENST00000371130
  gene symbol: TENM1
  hgvsc: ENST00000371130.3:c.3586G>T
  hgvsp: ENSP00000360171.3:p.Ala1196Ser
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000403954
  ensembl transcript: ENST00000422452
  gene symbol: TENM1
  hgvsc: ENST00000422452.2:c.3586G>T
  hgvsp: ENSP00000403954.2:p.Ala1196Ser
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000009694
  ensembl transcript: ENST00000461429
  gene symbol: TENM1
  hgvsc: ENST00000461429.1:n.19G>T
  variant of: http://identifiers.org/hgnc/8117
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1281
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  variant carriers: 1
hgvs: p.Ala1196Ser
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ

X-123630988-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24123630988
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24123630988
    reference: chr 0
allele count: 1
allele frequency: 1.171975716663151e-5
allele num: 85326
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000360171
  ensembl transcript: ENST00000371130
  gene symbol: TENM1
  hgvsc: ENST00000371130.3:c.3573C>T
  hgvsp: ENST00000371130.3:c.3573C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000009694
  ensembl transcript: ENST00000461429
  gene symbol: TENM1
  hgvsc: ENST00000461429.1:n.6C>T
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000403954
  ensembl transcript: ENST00000422452
  gene symbol: TENM1
  hgvsc: ENST00000422452.2:c.3573C>T
  hgvsp: ENST00000422452.2:c.3573C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8117
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Asn1191Asn
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQ

X-123631000-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24123631000
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24123631000
    reference: chr 0
allele count: 1
allele frequency: 1.179287003077939e-5
allele num: 84797
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000360171
  ensembl transcript: ENST00000371130
  gene symbol: TENM1
  hgvsc: ENST00000371130.3:c.3561C>T
  hgvsp: ENST00000371130.3:c.3561C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000403954
  ensembl transcript: ENST00000422452
  gene symbol: TENM1
  hgvsc: ENST00000422452.2:c.3561C>T
  hgvsp: ENST00000422452.2:c.3561C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8117
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: p.Gly1187Gly
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6435
  num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

X-123631004-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24123631004
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24123631004
    reference: chr 0
allele count: 2
allele frequency: 2.36630383341221e-5
allele num: 84520
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000360171
  ensembl transcript: ENST00000371130
  gene symbol: TENM1
  hgvsc: ENST00000371130.3:c.3557A>G
  hgvsp: ENSP00000360171.3:p.Asn1186Ser
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000403954
  ensembl transcript: ENST00000422452
  gene symbol: TENM1
  hgvsc: ENST00000422452.2:c.3557A>G
  hgvsp: ENSP00000403954.2:p.Asn1186Ser
  variant of: http://identifiers.org/hgnc/8117
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Asn1186Ser
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8968
  num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: African
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff

X-123631021-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24123631021
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24123631021
    reference: chr 0
allele count: 1
allele frequency: 1.200984807542185e-5
allele num: 83265
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000403954
  ensembl transcript: ENST00000422452
  gene symbol: TENM1
  hgvsc: ENST00000422452.2:c.3540A>G
  hgvsp: ENST00000422452.2:c.3540A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000360171
  ensembl transcript: ENST00000371130
  gene symbol: TENM1
  hgvsc: ENST00000371130.3:c.3540A>G
  hgvsp: ENST00000371130.3:c.3540A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8117
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Val1180Val
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 1
  allele frequency: 2.197222710493936e-5
  allele num: 45512
  num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: FS
site quality: QD

X-123631025-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24123631025
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24123631025
    reference: chr 0
allele count: 1
allele frequency: 1.205574576843323e-5
allele num: 82948
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000403954
  ensembl transcript: ENST00000422452
  gene symbol: TENM1
  hgvsc: ENST00000422452.2:c.3536G>A
  hgvsp: ENSP00000403954.2:p.Ser1179Asn
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000360171
  ensembl transcript: ENST00000371130
  gene symbol: TENM1
  hgvsc: ENST00000371130.3:c.3536G>A
  hgvsp: ENSP00000360171.3:p.Ser1179Asn
  variant of: http://identifiers.org/hgnc/8117
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 244
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 201
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 1093
  bin: 7.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 38102
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 5536
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 873
  bin: 3.75e1
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genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1245
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1017
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1136
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ser1179Asn
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 4208
  num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum

X-123631034-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24123631034
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24123631034
    reference: chr 0
allele count: 3
allele frequency: 3.653368405670028e-5
allele num: 82116
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000403954
  ensembl transcript: ENST00000422452
  gene symbol: TENM1
  hgvsc: ENST00000422452.2:c.3527A>G
  hgvsp: ENSP00000403954.2:p.His1176Arg
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000360171
  ensembl transcript: ENST00000371130
  gene symbol: TENM1
  hgvsc: ENST00000371130.3:c.3527A>G
  hgvsp: ENSP00000360171.3:p.His1176Arg
  variant of: http://identifiers.org/hgnc/8117
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4064
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4971
  bin: 7.5e0
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genotype depth: GenotypeDepth
  all individuals: 253
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 2.5e0
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genotype depth: GenotypeDepth
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  bin: 1.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4621
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genotype depth: GenotypeDepth
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  bin: 6.75e1
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genotype depth: GenotypeDepth
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  bin: 5.75e1
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genotype depth: GenotypeDepth
  all individuals: 151
  bin: 4.75e1
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genotype depth: GenotypeDepth
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  bin: 3.75e1
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genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.25e1
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genotype depth: GenotypeDepth
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  bin: 8.75e1
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genotype depth: GenotypeDepth
  all individuals: 22191
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 740
  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 670
  bin: 5.25e1
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genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
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  bin: 8.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 57
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 435
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 197
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1065
  bin: 7.75e1
  variant carriers: 0
hgvs: p.His1176Arg
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6269
  num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: Latino
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

X-123631048-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24123631048
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24123631048
    reference: chr 0
allele count: 6
allele frequency: 7.47896540978498e-5
allele num: 80225
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000403954
  ensembl transcript: ENST00000422452
  gene symbol: TENM1
  hgvsc: ENST00000422452.2:c.3513A>G
  hgvsp: ENSP00000403954.2:p.Ile1171Met
  variant of: http://identifiers.org/hgnc/8117
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009694
  ensembl protein: ENSP00000360171
  ensembl transcript: ENST00000371130
  gene symbol: TENM1
  hgvsc: ENST00000371130.3:c.3513A>G
  hgvsp: ENSP00000360171.3:p.Ile1171Met
  variant of: http://identifiers.org/hgnc/8117
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5726
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 96
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genotype depth: GenotypeDepth
  all individuals: 20950
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 7.5e0
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genotype depth: GenotypeDepth
  all individuals: 70
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genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ile1171Met
num of homozygotes: 0
reference allele: T

GenotypeQuality
all individuals: 630
bin: 6.25e1
variant carriers: 11

South Asian
type: Population
allele count: 6
allele frequency: 6.688963210702341e-3
allele num: 897
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 6.097560975609756e-3
allele num: 492
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 471
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.492537313432836e-2
allele num: 67
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 271
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 4.118307749906402e-3
allele num: 2671
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 6.263048016701462e-3
allele num: 479
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.07e-1

DP
type: SiteQuality
SIO_000300: 3.10375e5

ClippingRankSum
type: SiteQuality
SIO_000300: 7.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.003e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.34e-1

QD
type: SiteQuality
SIO_000300: 2.75e0

VQSLOD
type: SiteQuality
SIO_000300: 3.32e0

GenotypeQuality
all individuals: 161
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 897
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 479
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 4.065040650406504e-3
allele num: 492
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 471
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 67
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2671
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 271
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.32e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.07e-1

DP
type: SiteQuality
SIO_000300: 3.10375e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.003e-1

QD
type: SiteQuality
SIO_000300: 2.75e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.34e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 66
bin: 8.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 479
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 471
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 492
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 271
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 897
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 67
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 7.487832272557095e-4
allele num: 2671
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.10375e5

ClippingRankSum
type: SiteQuality
SIO_000300: 7.36e-1

QD
type: SiteQuality
SIO_000300: 2.75e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.003e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.32e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.34e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.07e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 479
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.032520325203252e-3
allele num: 492
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 271
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 67
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 471
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.743916136278548e-4
allele num: 2671
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 897
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.34e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.36e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.003e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.75e0

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 3.10375e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.07e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 471
num of homozygotes: 0

African
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allele count: 1
allele frequency: 2.032520325203252e-3
allele num: 492
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 897
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 67
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 479
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 7.487832272557095e-4
allele num: 2671
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 271
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.07e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

DP
type: SiteQuality
SIO_000300: 3.10375e5

ClippingRankSum
type: SiteQuality
SIO_000300: 7.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.34e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.32e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.003e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.75e0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 67
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 479
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 271
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2671
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 471
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 897
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 492
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.36e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

DP
type: SiteQuality
SIO_000300: 3.10375e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.003e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.07e-1

QD
type: SiteQuality
SIO_000300: 2.75e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.32e0

GenotypeQuality
all individuals: 51
bin: 9.25e1
variant carriers: 3

African
type: Population
allele count: 3
allele frequency: 1.924310455420141e-3
allele num: 1559
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 1.670378619153675e-3
allele num: 1796
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 6.84931506849315e-3
allele num: 146
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 841
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 3.059663437021928e-3
allele num: 1961
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1023
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 1.541911970843846e-3
allele num: 7134
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.42e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.916e0

DP
type: SiteQuality
SIO_000300: 4.50903e5

ClippingRankSum
type: SiteQuality
SIO_000300: 6.900000000000001e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.7e-2

QD
type: SiteQuality
SIO_000300: 3.72e0

GenotypeQuality
all individuals: 63
bin: 9.25e1
variant carriers: 3

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2214
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 1.886792452830189e-3
allele num: 3180
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 1.021450459652707e-3
allele num: 2937
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 4.385964912280702e-3
allele num: 228
num of homozygotes: 0

Latino
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allele count: 3
allele frequency: 7.890583903208837e-4
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European (Non-Finnish)
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allele frequency: 6.221914967162116e-4
allele num: 14465
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European (Finnish)
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allele frequency: 0.0e0
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MQRankSum
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QD
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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MQ
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InbreedingCoeff
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FS
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DP
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SIO_000300: 6.17338e5

BaseQRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2198
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South Asian
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African
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allele frequency: 3.892060197197717e-3
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Latino
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allele frequency: 2.037905033625433e-4
allele num: 4907
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 19513
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Other
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allele frequency: 0.0e0
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East Asian
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BaseQRankSum
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InbreedingCoeff
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FS
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ClippingRankSum
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MQRankSum
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QD
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VQSLOD
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MQ
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ReadPosRankSum
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DP
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GenotypeQuality
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variant carriers: 0

East Asian
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allele num: 3146
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Latino
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allele frequency: 4.075810067250866e-4
allele num: 4907
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South Asian
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African
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European (Finnish)
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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InbreedingCoeff
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MQ
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VQSLOD
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MQRankSum
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QD
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FS
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ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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DP
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SIO_000300: 7.20964e5

GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 19513
num of homozygotes: 0

East Asian
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Latino
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allele frequency: 6.113715100876299e-4
allele num: 4907
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African
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allele frequency: 4.67047223663726e-3
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South Asian
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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QD
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DP
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FS
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ClippingRankSum
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 2.050861361771944e-4
allele num: 4876
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Latino
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South Asian
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European (Non-Finnish)
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allele count: 2
allele frequency: 7.941234862021044e-5
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East Asian
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European (Finnish)
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allele frequency: 0.0e0
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Other
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allele num: 355
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQ
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ClippingRankSum
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VQSLOD
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DP
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BaseQRankSum
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QD
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ReadPosRankSum
type: SiteQuality
SIO_000300: -1.273e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

European (Finnish)
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allele frequency: 0.0e0
allele num: 4237
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East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 1.289989680082559e-4
allele num: 7752
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 42343
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South Asian
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Latino
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Other
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MQRankSum
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DP
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BaseQRankSum
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
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FS
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QD
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ClippingRankSum
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ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

GenotypeQuality
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variant carriers: 0

European (Finnish)
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Latino
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African
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East Asian
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European (Non-Finnish)
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allele count: 1
allele frequency: 2.105529119467722e-5
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Other
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South Asian
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allele frequency: 1.833367284579344e-3
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FS
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MQ
type: SiteQuality
SIO_000300: 5.973e1

MQRankSum
type: SiteQuality
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ClippingRankSum
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VQSLOD
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DP
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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Latino
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East Asian
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African
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European (Non-Finnish)
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allele frequency: 2.100090303883067e-5
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European (Finnish)
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Other
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MQRankSum
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QD
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BaseQRankSum
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FS
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DP
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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MQ
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GenotypeQuality
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East Asian
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South Asian
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African
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European (Finnish)
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Latino
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European (Non-Finnish)
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Other
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FS
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DP
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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MQ
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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QD
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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Latino
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South Asian
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European (Finnish)
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African
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Other
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VQSLOD
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BaseQRankSum
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ReadPosRankSum
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FS
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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DP
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MQ
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QD
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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East Asian
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Other
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African
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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MQRankSum
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FS
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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DP
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MQ
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InbreedingCoeff
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ReadPosRankSum
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QD
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GenotypeQuality
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variant carriers: 0

South Asian
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European (Finnish)
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Other
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Latino
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East Asian
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European (Non-Finnish)
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African
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MQRankSum
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BaseQRankSum
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MQ
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ClippingRankSum
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ReadPosRankSum
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VQSLOD
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FS
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QD
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DP
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InbreedingCoeff
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GenotypeQuality
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variant carriers: 0

African
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Other
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Latino
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South Asian
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East Asian
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European (Non-Finnish)
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European (Finnish)
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MQ
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VQSLOD
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FS
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QD
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InbreedingCoeff
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DP
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GenotypeQuality
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European (Non-Finnish)
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allele num: 47918
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European (Finnish)
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Other
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East Asian
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African
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South Asian
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Latino
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MQ
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BaseQRankSum
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MQRankSum
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DP
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VQSLOD
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InbreedingCoeff
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FS
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ReadPosRankSum
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QD
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ClippingRankSum
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GenotypeQuality
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variant carriers: 0

African
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East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 1.979414093428345e-4
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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InbreedingCoeff
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DP
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MQ
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ReadPosRankSum
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BaseQRankSum
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FS
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VQSLOD
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MQRankSum
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ClippingRankSum
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QD
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
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allele frequency: 2.085940759282436e-5
allele num: 47940
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Other
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allele frequency: 0.0e0
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South Asian
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African
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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InbreedingCoeff
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FS
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DP
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VQSLOD
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QD
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MQ
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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African
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allele frequency: 1.174536058256989e-4
allele num: 8514
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
allele num: 4524
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South Asian
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DP
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MQ
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ClippingRankSum
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MQRankSum
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FS
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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QD
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ReadPosRankSum
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
allele num: 8514
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
allele num: 4524
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Other
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 6.257300183547472e-5
allele num: 47944
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InbreedingCoeff
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ClippingRankSum
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QD
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FS
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MQRankSum
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MQ
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DP
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BaseQRankSum
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ReadPosRankSum
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VQSLOD
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 2.348796241926013e-4
allele num: 8515
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East Asian
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South Asian
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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Latino
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ClippingRankSum
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DP
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FS
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ReadPosRankSum
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MQRankSum
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VQSLOD
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QD
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BaseQRankSum
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InbreedingCoeff
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MQ
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
allele num: 9310
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European (Finnish)
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allele frequency: 0.0e0
allele num: 4526
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East Asian
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South Asian
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 2.085375263278627e-5
allele num: 47953
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Other
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FS
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MQ
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VQSLOD
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ReadPosRankSum
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QD
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.377056e6

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4526
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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South Asian
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 2.085288291106245e-5
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African
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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QD
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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FS
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DP
type: SiteQuality
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ReadPosRankSum
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MQ
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VQSLOD
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ClippingRankSum
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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Latino
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allele frequency: 3.221995489206315e-4
allele num: 9311
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Other
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South Asian
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East Asian
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African
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allele frequency: 0.0e0
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European (Finnish)
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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MQ
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VQSLOD
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QD
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ClippingRankSum
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DP
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FS
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MQRankSum
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GenotypeQuality
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variant carriers: 0

Other
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East Asian
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allele frequency: 1.508068164681044e-3
allele num: 6631
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South Asian
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African
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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European (Non-Finnish)
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MQ
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FS
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BaseQRankSum
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MQRankSum
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VQSLOD
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DP
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InbreedingCoeff
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QD
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ReadPosRankSum
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ClippingRankSum
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Other
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South Asian
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African
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European (Finnish)
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East Asian
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European (Non-Finnish)
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Latino
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allele num: 9311
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MQ
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ClippingRankSum
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MQRankSum
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VQSLOD
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FS
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DP
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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QD
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

African
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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European (Non-Finnish)
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Other
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Latino
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South Asian
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FS
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VQSLOD
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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MQ
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ReadPosRankSum
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DP
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ClippingRankSum
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QD
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GenotypeQuality
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variant carriers: 0

East Asian
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South Asian
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European (Finnish)
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Latino
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African
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Other
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European (Non-Finnish)
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ClippingRankSum
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FS
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InbreedingCoeff
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BaseQRankSum
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MQ
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MQRankSum
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QD
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VQSLOD
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ReadPosRankSum
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DP
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GenotypeQuality
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variant carriers: 0

South Asian
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Latino
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European (Non-Finnish)
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East Asian
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African
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European (Finnish)
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Other
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ReadPosRankSum
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QD
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VQSLOD
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FS
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MQRankSum
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InbreedingCoeff
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DP
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BaseQRankSum
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ClippingRankSum
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MQ
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GenotypeQuality
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Latino
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East Asian
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Other
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European (Non-Finnish)
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European (Finnish)
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South Asian
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African
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VQSLOD
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MQRankSum
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FS
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DP
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QD
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InbreedingCoeff
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ReadPosRankSum
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MQ
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BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.17e0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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East Asian
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 2.209456473707468e-4
allele num: 4526
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European (Non-Finnish)
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allele frequency: 2.085940759282436e-5
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ClippingRankSum
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DP
type: SiteQuality
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
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FS
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 5.89e-1

GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.087290488217245e-5
allele num: 47909
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Latino
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allele frequency: 0.0e0
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African
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East Asian
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South Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
allele num: 630
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European (Finnish)
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allele frequency: 0.0e0
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QD
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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MQRankSum
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DP
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FS
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ClippingRankSum
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MQ
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GenotypeQuality
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variant carriers: 0

South Asian
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allele num: 9940
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East Asian
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allele frequency: 1.508295625942685e-4
allele num: 6630
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
allele num: 4522
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Other
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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DP
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BaseQRankSum
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VQSLOD
type: SiteQuality
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InbreedingCoeff
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FS
type: SiteQuality
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MQ
type: SiteQuality
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QD
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ClippingRankSum
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SIO_000300: -5.48e-1

MQRankSum
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ReadPosRankSum
type: SiteQuality
SIO_000300: 7.77e-1

GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
allele num: 622
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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African
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allele frequency: 1.180080245456691e-4
allele num: 8474
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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ReadPosRankSum
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SIO_000300: 3.0e-3

MQ
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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DP
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QD
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FS
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MQRankSum
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VQSLOD
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InbreedingCoeff
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SIO_000300: -5.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -5.22e-1

GenotypeQuality
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variant carriers: 36

Other
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allele frequency: 0.0e0
allele num: 621
num of homozygotes: 0

European (Non-Finnish)
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allele count: 32
allele frequency: 6.722830311561167e-4
allele num: 47599
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Latino
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allele frequency: 2.158661629789531e-4
allele num: 9265
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African
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allele frequency: 1.180637544273908e-4
allele num: 8470
num of homozygotes: 0

European (Finnish)
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allele count: 3
allele frequency: 6.640106241699867e-4
allele num: 4518
num of homozygotes: 0

East Asian
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South Asian
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VQSLOD
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.867e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.7e-2

BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 8.23e-1

DP
type: SiteQuality
SIO_000300: 1.345773e6

MQ
type: SiteQuality
SIO_000300: 5.982e1

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
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allele frequency: 2.101855938793955e-5
allele num: 47577
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4518
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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South Asian
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East Asian
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Other
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allele frequency: 0.0e0
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QD
type: SiteQuality
SIO_000300: 3.275e1

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.341835e6

FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.74e-2

MQ
type: SiteQuality
SIO_000300: 5.948e1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

African
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allele frequency: 1.181334908446545e-4
allele num: 8465
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Latino
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allele frequency: 5.40423692174665e-4
allele num: 9252
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European (Non-Finnish)
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allele count: 131
allele frequency: 2.76097540413514e-3
allele num: 47447
num of homozygotes: 0

South Asian
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allele frequency: 3.281557646029315e-4
allele num: 9142
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Other
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 1
allele frequency: 2.21483942414175e-4
allele num: 4515
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.979e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.461e-1

BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 1.87e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.87e-1

ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.343195e6

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8465
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4515
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.107614812316901e-5
allele num: 47447
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Latino
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allele frequency: 0.0e0
allele num: 9252
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Other
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allele frequency: 0.0e0
allele num: 620
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East Asian
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South Asian
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ClippingRankSum
type: SiteQuality
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FS
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 5.87e-1

MQ
type: SiteQuality
SIO_000300: 5.979e1

DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 4.461e-1

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 2.601e1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.145600446284893e-5
allele num: 46607
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 612
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Latino
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East Asian
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South Asian
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QD
type: SiteQuality
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DP
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FS
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InbreedingCoeff
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SIO_000300: 8.699999999999999e-3

MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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Other
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 2.199058802832388e-5
allele num: 45474
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Latino
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BaseQRankSum
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DP
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VQSLOD
type: SiteQuality
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QD
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InbreedingCoeff
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 4.129e0

MQ
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MQRankSum
type: SiteQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Latino
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Finnish)
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East Asian
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European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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South Asian
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allele num: 7624
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MQ
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MQRankSum
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VQSLOD
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FS
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QD
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DP
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

East Asian
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num of homozygotes: 0

South Asian
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African
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Other
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European (Non-Finnish)
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Latino
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allele frequency: 1.117193609652553e-4
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European (Finnish)
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ReadPosRankSum
type: SiteQuality
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VQSLOD
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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DP
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FS
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MQ
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

Other
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East Asian
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Latino
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European (Finnish)
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South Asian
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European (Non-Finnish)
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African
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InbreedingCoeff
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DP
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MQ
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ReadPosRankSum
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QD
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VQSLOD
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FS
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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GenotypeQuality
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African
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num of homozygotes: 0

European (Finnish)
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East Asian
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European (Non-Finnish)
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Latino
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Other
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South Asian
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DP
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BaseQRankSum
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QD
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FS
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MQRankSum
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InbreedingCoeff
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SIO_000300: 4.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -4.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.005e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 417
bin: 9.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6009
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.34554580850964e-5
allele num: 42634
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4344
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7935
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6374
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 556
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.065295e6

VQSLOD
type: SiteQuality
SIO_000300: -2.923e-1

QD
type: SiteQuality
SIO_000300: 2.835e1

GenotypeQuality
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bin: 7.25e1
variant carriers: 1

South Asian
type: Population
allele count: 72
allele frequency: 1.727032861597505e-2
allele num: 4169
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1788
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 50
allele frequency: 7.589556769884639e-3
allele num: 6588
num of homozygotes: 2

Latino
type: Population
allele count: 1
allele frequency: 3.194888178913738e-3
allele num: 313
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 2.307692307692308e-2
allele num: 130
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 29
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.29e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.83e-1

DP
type: SiteQuality
SIO_000300: 5.40641e5

ClippingRankSum
type: SiteQuality
SIO_000300: -3.15e-1

FS
type: SiteQuality
SIO_000300: 5.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.055e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.7e-2

QD
type: SiteQuality
SIO_000300: 1.822e1

VQSLOD
type: SiteQuality
SIO_000300: 6.58e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 478
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6627
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4284
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 130
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 29
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 314
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 508
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 5.586592178770949e-4
allele num: 1790
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -5.471e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.294e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.159999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.972e1

MQRankSum
type: SiteQuality
SIO_000300: 6.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.03e-2

DP
type: SiteQuality
SIO_000300: 5.48123e5

FS
type: SiteQuality
SIO_000300: 6.6e-1

QD
type: SiteQuality
SIO_000300: 1.97e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.14e0

GenotypeQuality
all individuals: 3679
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 313
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.328288707799767e-4
allele num: 4295
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 29
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 130
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1791
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6632
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.68e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.845e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.208e-1

DP
type: SiteQuality
SIO_000300: 5.48564e5

GenotypeQuality
all individuals: 99
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.354603249352484e-4
allele num: 4247
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 29
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 130
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1793
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 312
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-3

VQSLOD
type: SiteQuality
SIO_000300: 5.15e-1

DP
type: SiteQuality
SIO_000300: 5.43767e5

QD
type: SiteQuality
SIO_000300: 2.991e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1888
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7603
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6459
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8026
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4458
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.1001100110011e-4
allele num: 9090
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45896
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 588
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.13e0

DP
type: SiteQuality
SIO_000300: 1.472932e6

MQRankSum
type: SiteQuality
SIO_000300: -5.52e-1

QD
type: SiteQuality
SIO_000300: 1.661e1

FS
type: SiteQuality
SIO_000300: 2.675e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.351e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.67e0

MQ
type: SiteQuality
SIO_000300: 5.921e1

VQSLOD
type: SiteQuality
SIO_000300: -9.691e-1

GenotypeQuality
all individuals: 7027
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9092
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 595
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7660
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4460
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6478
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.165627165627166e-5
allele num: 46176
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 3.609239653512993e-4
allele num: 8312
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.15e-2

DP
type: SiteQuality
SIO_000300: 1.495809e6

FS
type: SiteQuality
SIO_000300: 7.83e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.675e0

MQRankSum
type: SiteQuality
SIO_000300: -1.73e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.79e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.84e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.69e-1

QD
type: SiteQuality
SIO_000300: 2.093e1

GenotypeQuality
all individuals: 7085
bin: 6.75e1
variant carriers: 3

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7722
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4460
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9096
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6481
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8499
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 37
allele frequency: 7.982567797890013e-4
allele num: 46351
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 599
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.961e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.217e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.8e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.23e0

FS
type: SiteQuality
SIO_000300: 1.939e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.85e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.14e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.55e-1

QD
type: SiteQuality
SIO_000300: 1.763e1

DP
type: SiteQuality
SIO_000300: 1.507637e6

GenotypeQuality
all individuals: 1446
bin: 9.75e1
variant carriers: 38

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9113
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7761
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6493
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 607
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 47
allele frequency: 1.009103400893164e-3
allele num: 46576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8710
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4462
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.93e-1

FS
type: SiteQuality
SIO_000300: 5.38e0

MQ
type: SiteQuality
SIO_000300: 5.959e1

VQSLOD
type: SiteQuality
SIO_000300: 9.419999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.688e1

DP
type: SiteQuality
SIO_000300: 1.520048e6

MQRankSum
type: SiteQuality
SIO_000300: 3.77e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.399e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.07e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.0e-1

GenotypeQuality
all individuals: 278
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7845
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46841
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.096611470555982e-4
allele num: 9119
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 613
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 5.583472920156337e-4
allele num: 8955
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6507
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4461
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.43e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.407e0

QD
type: SiteQuality
SIO_000300: 1.775e1

MQRankSum
type: SiteQuality
SIO_000300: 1.8e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.8e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.46e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.7e-2

DP
type: SiteQuality
SIO_000300: 1.529696e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 797
bin: 8.25e1
variant carriers: 0

African
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allele count: 5
allele frequency: 6.21272365805169e-4
allele num: 8048
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 625
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 9772
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47379
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9135
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4469
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.42e0

MQRankSum
type: SiteQuality
SIO_000300: 1.12e0

MQ
type: SiteQuality
SIO_000300: 5.943e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.67e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.43e0

VQSLOD
type: SiteQuality
SIO_000300: -1.752e0

DP
type: SiteQuality
SIO_000300: 1.56126e6

FS
type: SiteQuality
SIO_000300: 5.669999999999999e-1

QD
type: SiteQuality
SIO_000300: 2.066e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.350000000000001e-1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.054367745876604e-4
allele num: 6548
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.10699311013253e-5
allele num: 47461
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4470
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9900
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 625
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9136
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.460327223520728e-4
allele num: 8129
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.9e-2

FS
type: SiteQuality
SIO_000300: 3.554e0

QD
type: SiteQuality
SIO_000300: 1.93e1

VQSLOD
type: SiteQuality
SIO_000300: 7.08e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.86e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.98e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.732e0

DP
type: SiteQuality
SIO_000300: 1.567778e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

GenotypeQuality
all individuals: 25
bin: 1.75e1
variant carriers: 0

South Asian
type: Population
allele count: 6
allele frequency: 5.998200539838049e-4
allele num: 10003
num of homozygotes: 0

East Asian
type: Population
allele count: 19
allele frequency: 2.894576477757465e-3
allele num: 6564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 627
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4474
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9144
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8278
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.04e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.89e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.274e-1

QD
type: SiteQuality
SIO_000300: 1.684e1

MQ
type: SiteQuality
SIO_000300: 5.966e1

VQSLOD
type: SiteQuality
SIO_000300: 8.01e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.0e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.11e0

DP
type: SiteQuality
SIO_000300: 1.574943e6

GenotypeQuality
all individuals: 250
bin: 3.25e1
variant carriers: 0

East Asian
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allele count: 2
allele frequency: 3.045994517209869e-4
allele num: 6566
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8310
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.10176758654028e-5
allele num: 47579
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 9145
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4474
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 627
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10005
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.346e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.61e0

QD
type: SiteQuality
SIO_000300: 1.521e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-2

FS
type: SiteQuality
SIO_000300: 1.1509e1

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.574566e6

MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.54e0

VQSLOD
type: SiteQuality
SIO_000300: -1.606e0

GenotypeQuality
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bin: 4.75e1
variant carriers: 1

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 10003
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 8.404244143292363e-5
allele num: 47595
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.589825119236884e-3
allele num: 629
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6573
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Latino
type: Population
allele count: 4
allele frequency: 4.372540445999126e-4
allele num: 9148
num of homozygotes: 0

African
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allele count: 133
allele frequency: 1.583899011551745e-2
allele num: 8397
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4474
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.394e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.634e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.76e-1

QD
type: SiteQuality
SIO_000300: 1.832e1

MQ
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.578305e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.25e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.08e-1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

African
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allele count: 32
allele frequency: 3.799121453163956e-3
allele num: 8423
num of homozygotes: 0

Latino
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allele count: 3
allele frequency: 3.280481137233461e-4
allele num: 9145
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4469
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47571
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Other
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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InbreedingCoeff
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.900000000000001e-2

VQSLOD
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MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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QD
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SIO_000300: 1.604e1

MQ
type: SiteQuality
SIO_000300: 5.969e1

DP
type: SiteQuality
SIO_000300: 1.570755e6

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.105750805449683e-5
allele num: 47489
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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African
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allele num: 8437
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South Asian
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allele count: 0
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 629
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4469
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East Asian
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allele count: 0
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allele num: 6547
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BaseQRankSum
type: SiteQuality
SIO_000300: 8.090000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.73e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.261e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.28e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.500000000000001e-2

QD
type: SiteQuality
SIO_000300: 2.608e1

MQRankSum
type: SiteQuality
SIO_000300: -5.54e-1

DP
type: SiteQuality
SIO_000300: 1.565049e6

GenotypeQuality
all individuals: 1882
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
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allele num: 629
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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African
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allele count: 3
allele frequency: 3.558296761949947e-4
allele num: 8431
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Latino
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allele count: 1
allele frequency: 1.096250822188117e-4
allele num: 9122
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4462
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6532
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47439
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.53e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.82e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

DP
type: SiteQuality
SIO_000300: 1.5594e6

BaseQRankSum
type: SiteQuality
SIO_000300: 7.32e-1

MQ
type: SiteQuality
SIO_000300: 5.982e1

VQSLOD
type: SiteQuality
SIO_000300: 3.7e0

QD
type: SiteQuality
SIO_000300: 1.416e1

MQRankSum
type: SiteQuality
SIO_000300: 4.7e-1

FS
type: SiteQuality
SIO_000300: 1.237e0

GenotypeQuality
all individuals: 399
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9074
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.19047619047619e-4
allele num: 8400
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6496
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 624
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European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 8.494552867973413e-5
allele num: 47089
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 9830
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4422
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ClippingRankSum
type: SiteQuality
SIO_000300: -3.11e-1

DP
type: SiteQuality
SIO_000300: 1.533896e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.77e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.400000000000001e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.299999999999999e-3

VQSLOD
type: SiteQuality
SIO_000300: 5.37e0

MQRankSum
type: SiteQuality
SIO_000300: -6.3e-2

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.973e1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.018018935152194e-4
allele num: 9823
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6498
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4424
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8397
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.123683316343867e-5
allele num: 47088
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9074
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 623
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DP
type: SiteQuality
SIO_000300: 1.53177e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.27e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.061e0

MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.981e1

FS
type: SiteQuality
SIO_000300: 9.99e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.5e-2

QD
type: SiteQuality
SIO_000300: 2.112e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.31e0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9060
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.127478512467024e-5
allele num: 47004
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 8392
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4406
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South Asian
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allele count: 0
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allele num: 9789
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Other
type: Population
allele count: 0
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allele num: 624
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East Asian
type: Population
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allele num: 6472
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ClippingRankSum
type: SiteQuality
SIO_000300: 4.9e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

DP
type: SiteQuality
SIO_000300: 1.523134e6

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -5.17e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 9.75e1
variant carriers: 0

Other
type: Population
allele count: 0
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allele num: 620
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 2.13816844491009e-5
allele num: 46769
num of homozygotes: 0

African
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East Asian
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allele count: 0
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9024
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4363
num of homozygotes: 0

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.56e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.507985e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46452
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.11123458162018e-4
allele num: 8999
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
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allele num: 9623
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 616
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BaseQRankSum
type: SiteQuality
SIO_000300: -3.951e0

ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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FS
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.492411e6

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.321614555197822e-5
allele num: 46279
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South Asian
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European (Finnish)
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allele count: 0
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East Asian
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allele count: 0
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Other
type: Population
allele count: 0
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African
type: Population
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 4.11e-2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6347
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4226
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Latino
type: Population
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Other
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African
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South Asian
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InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
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DP
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FS
type: SiteQuality
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QD
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Other
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allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
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num of homozygotes: 0

Latino
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 2.206190570741501e-5
allele num: 45327
num of homozygotes: 0

African
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 7.82e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.05e-1

African
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European (Non-Finnish)
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allele frequency: 6.692693809258227e-5
allele num: 44825
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4149
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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