X-49106209-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049106209
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049106209
    reference: chr 0
allele count: 1
allele frequency: 1.303594008681936e-5
allele num: 76711
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101997
  ensembl protein: ENSP00000365401
  ensembl transcript: ENST00000376227
  gene symbol: CCDC22
  hgvsc: ENST00000376227.3:c.1770+23G>A
  variant of: http://identifiers.org/hgnc/28909
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 1
  allele frequency: 2.399635255441173e-5
  allele num: 41673
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population: South Asian
  type: Population
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population: East Asian
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  num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Finnish)
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQ

X-49106219-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049106219
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049106219
    reference: chr 0
allele count: 79
allele frequency: 1.086328758835016e-3
allele num: 72722
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101997
  ensembl protein: ENSP00000365401
  ensembl transcript: ENST00000376227
  gene symbol: CCDC22
  hgvsc: ENST00000376227.3:c.1770+33C>T
  variant of: http://identifiers.org/hgnc/28909
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: African
  type: Population
  allele count: 22
  allele frequency: 3.047935716264893e-3
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population: East Asian
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  allele frequency: 8.705842959986606e-3
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population: European (Finnish)
  type: Population
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  allele num: 2997
  num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: QD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

X-49106220-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049106220
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049106220
    reference: chr 0
allele count: 5
allele frequency: 6.949849883242521e-5
allele num: 71944
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101997
  ensembl protein: ENSP00000365401
  ensembl transcript: ENST00000376227
  gene symbol: CCDC22
  hgvsc: ENST00000376227.3:c.1770+34G>A
  variant of: http://identifiers.org/hgnc/28909
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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num of homozygotes: 0
population: Other
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population: African
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population: European (Non-Finnish)
  type: Population
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  allele frequency: 2.57406883060053e-5
  allele num: 38849
  num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: G
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

X-49106224-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049106224
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049106224
    reference: chr 0
allele count: 2
allele frequency: 2.838651073010106e-5
allele num: 70456
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101997
  ensembl protein: ENSP00000365401
  ensembl transcript: ENST00000376227
  gene symbol: CCDC22
  hgvsc: ENST00000376227.3:c.1770+38C>G
  variant of: http://identifiers.org/hgnc/28909
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2711
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: South Asian
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population: East Asian
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population: Latino
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population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD

X-49106224-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049106224
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049106224
    reference: chr 0
allele count: 4
allele frequency: 5.677302146020211e-5
allele num: 70456
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000101997
  ensembl protein: ENSP00000365401
  ensembl transcript: ENST00000376227
  gene symbol: CCDC22
  hgvsc: ENST00000376227.3:c.1770+38C>T
  variant of: http://identifiers.org/hgnc/28909
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 481
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  allele num: 38016
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population: Latino
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population: East Asian
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population: Other
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population: South Asian
population: African
reference allele: C
site quality: FS
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site quality: BaseQRankSum
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X-49106648-G-A
type: Variant
location: Region
  begin: Position
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    reference: chr 0
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    type: ExactPosition
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allele count: 0
allele frequency: 0.0e0
allele num: 15328
alternate allele: A
annotation: Annotation
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  ensembl transcript: ENST00000376227
  gene symbol: CCDC22
  hgvsc: ENST00000376227.3:c.1810G>A
  hgvsp: ENSP00000365401.3:p.Glu604Lys
  variant of: http://identifiers.org/hgnc/28909
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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population: Other
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population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
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reference allele: G
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X-49106657-C-T
type: Variant
location: Region
  begin: Position
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    reference: chr 0
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allele count: 3
allele frequency: 1.960015680125441e-4
allele num: 15306
alternate allele: T
annotation: Annotation
  canonical: true
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  ensembl protein: ENSP00000365401
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  gene symbol: CCDC22
  hgvsc: ENST00000376227.3:c.1819C>T
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  variant of: http://identifiers.org/hgnc/28909
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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X-49106658-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049106658
    reference: chr 0
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    position: 24049106658
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allele count: 0
allele frequency: 0.0e0
allele num: 15313
alternate allele: A
annotation: Annotation
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  ensembl protein: ENSP00000365401
  ensembl transcript: ENST00000376227
  gene symbol: CCDC22
  hgvsc: ENST00000376227.3:c.1820G>A
  hgvsp: ENSP00000365401.3:p.Arg607Gln
  variant of: http://identifiers.org/hgnc/28909
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
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population: Latino
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X-49106671-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
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    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049106671
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 15210
alternate allele: T
annotation: Annotation
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  consequence: synonymous_variant
  ensembl gene: ENSG00000101997
  ensembl protein: ENSP00000365401
  ensembl transcript: ENST00000376227
  gene symbol: CCDC22
  hgvsc: ENST00000376227.3:c.1833A>T
  hgvsp: ENST00000376227.3:c.1833A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28909
canonical: true
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genotype quality: GenotypeQuality
  all individuals: 94
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Arg611Arg
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 141
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 340
  num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
reference allele: A
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQ

X-49106706-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049106706
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049106706
    reference: chr 0
allele count: 1
allele frequency: 7.237984944991314e-5
allele num: 13816
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000101997
  ensembl protein: ENSP00000365401
  ensembl transcript: ENST00000376227
  gene symbol: CCDC22
  hgvsc: ENST00000376227.3:c.1868G>A
  hgvsp: ENSP00000365401.3:p.Arg623Gln
  variant of: http://identifiers.org/hgnc/28909
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2007
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1434
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1921
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.25e1
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 130
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  variant carriers: 0
hgvs: p.Arg623Gln
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 476
  num of homozygotes: 0
population: African
  type: Population
  allele count: 1
  allele frequency: 4.593477262287552e-4
  allele num: 2177
  num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

X-49106732-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049106732
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049106732
    reference: chr 0
allele count: 1
allele frequency: 8.338892595063375e-5
allele num: 11992
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000101997
  ensembl protein: ENSP00000365401
  ensembl transcript: ENST00000376227
  gene symbol: CCDC22
  hgvsc: ENST00000376227.3:c.*10G>A
  variant of: http://identifiers.org/hgnc/28909
canonical: true
consequence: 3' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2845
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2403
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2903
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 5320
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 4220
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 255
  num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

X-49106747-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049106747
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049106747
    reference: chr 0
allele count: 11
allele frequency: 9.630537559096481e-4
allele num: 11422
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000101997
  ensembl protein: ENSP00000365401
  ensembl transcript: ENST00000376227
  gene symbol: CCDC22
  hgvsc: ENST00000376227.3:c.*25C>T
  variant of: http://identifiers.org/hgnc/28909
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12871
  bin: 2.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1410
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 14
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 115
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 1490
  num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: FS

X-49106867-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049106867
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049106867
    reference: chr 0
allele count: 1
allele frequency: 1.406469760900141e-4
allele num: 7110
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000101997
  ensembl protein: ENSP00000365401
  ensembl transcript: ENST00000376227
  gene symbol: CCDC22
  hgvsc: ENST00000376227.3:c.*145G>A
  variant of: http://identifiers.org/hgnc/28909
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1690
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 2
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 72
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 69
  num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP

X-49106879-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049106879
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049106878
    reference: chr 0
allele count: 1
allele frequency: 1.437194596148318e-4
allele num: 6958
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000101997
  ensembl protein: ENSP00000365401
  ensembl transcript: ENST00000376227
  gene symbol: CCDC22
  hgvsc: ENST00000376227.3:c.*161delG
  variant of: http://identifiers.org/hgnc/28909
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: East Asian
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population: South Asian
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population: African
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  allele num: 204
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population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: TG
site quality: VQSLOD
site quality: QD
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X-49106908-C-T
type: Variant
location: Region
  begin: Position
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    position: 24049106908
    reference: chr 0
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    type: ExactPosition
    position: 24049106908
    reference: chr 0
allele count: 1
allele frequency: 1.547029702970297e-4
allele num: 6464
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365372
  ensembl transcript: ENST00000376199
  gene symbol: FOXP3
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  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000101997
  ensembl protein: ENSP00000365401
  ensembl transcript: ENST00000376227
  gene symbol: CCDC22
  hgvsc: ENST00000376227.3:c.*186C>T
  variant of: http://identifiers.org/hgnc/28909
annotation: Annotation
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  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365380
  ensembl transcript: ENST00000376207
  gene symbol: FOXP3
  hgvsc: ENST00000376207.4:c.*887G>A
  variant of: http://identifiers.org/hgnc/6106
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
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site quality: FS
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X-49106912-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049106912
    reference: chr 0
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    type: ExactPosition
    position: 24049106912
    reference: chr 0
allele count: 0
allele frequency: 0.0e0
allele num: 6310
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365372
  ensembl transcript: ENST00000376199
  gene symbol: FOXP3
  hgvsc: ENST00000376199.2:c.*883A>C
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000101997
  ensembl protein: ENSP00000365401
  ensembl transcript: ENST00000376227
  gene symbol: CCDC22
  hgvsc: ENST00000376227.3:c.*190T>G
  variant of: http://identifiers.org/hgnc/28909
annotation: Annotation
  canonical: true
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  ensembl gene: ENSG00000049768
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  gene symbol: FOXP3
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  variant of: http://identifiers.org/hgnc/6106
canonical: true
consequence: 3' UTR
filter: AC_Adj0_Filter
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population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
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site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
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X-49106975-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049106975
    reference: chr 0
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    type: ExactPosition
    position: 24049106975
    reference: chr 0
allele count: 2
allele frequency: 5.422993492407809e-4
allele num: 3688
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000101997
  ensembl protein: ENSP00000365401
  ensembl transcript: ENST00000376227
  gene symbol: CCDC22
  hgvsc: ENST00000376227.3:c.*253C>T
  variant of: http://identifiers.org/hgnc/28909
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365380
  ensembl transcript: ENST00000376207
  gene symbol: FOXP3
  hgvsc: ENST00000376207.4:c.*820G>A
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365372
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  gene symbol: FOXP3
  hgvsc: ENST00000376199.2:c.*820G>A
  variant of: http://identifiers.org/hgnc/6106
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
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num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: Other
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population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
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X-49107766-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049107766
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049107766
    reference: chr 0
allele count: 1
allele frequency: 1.85490901671273e-5
allele num: 53911
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365372
  ensembl transcript: ENST00000376199
  gene symbol: FOXP3
  hgvsc: ENST00000376199.2:c.*29G>A
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365380
  ensembl transcript: ENST00000376207
  gene symbol: FOXP3
  hgvsc: ENST00000376207.4:c.*29G>A
  variant of: http://identifiers.org/hgnc/6106
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.75e1
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num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 386
  num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ

X-49107774-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049107774
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049107774
    reference: chr 0
allele count: 2
allele frequency: 3.611281643855404e-5
allele num: 55382
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365372
  ensembl transcript: ENST00000376199
  gene symbol: FOXP3
  hgvsc: ENST00000376199.2:c.*21G>A
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365380
  ensembl transcript: ENST00000376207
  gene symbol: FOXP3
  hgvsc: ENST00000376207.4:c.*21G>A
  variant of: http://identifiers.org/hgnc/6106
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 29549
  num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: African
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD

X-49107778-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049107778
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049107778
    reference: chr 0
allele count: 1
allele frequency: 1.783643984660662e-5
allele num: 56065
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365372
  ensembl transcript: ENST00000376199
  gene symbol: FOXP3
  hgvsc: ENST00000376199.2:c.*17A>G
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365380
  ensembl transcript: ENST00000376207
  gene symbol: FOXP3
  hgvsc: ENST00000376207.4:c.*17A>G
  variant of: http://identifiers.org/hgnc/6106
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22369
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6207
  num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: DP
site quality: VQSLOD

X-49107806-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049107806
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049107806
    reference: chr 0
allele count: 6
allele frequency: 9.546235601094635e-5
allele num: 62852
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000451208
  ensembl transcript: ENST00000557224
  gene symbol: FOXP3
  hgvsc: ENST00000557224.1:c.1360C>T
  hgvsp: ENSP00000451208.1:p.Pro454Ser
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365369
  ensembl transcript: ENST00000376197
  gene symbol: FOXP3
  hgvsc: ENST00000376197.1:c.1315C>T
  hgvsp: ENSP00000365369.1:p.Pro439Ser
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000396415
  ensembl transcript: ENST00000455775
  gene symbol: FOXP3
  hgvsc: ENST00000455775.2:c.1204C>T
  hgvsp: ENSP00000396415.2:p.Pro402Ser
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000428952
  ensembl transcript: ENST00000518685
  gene symbol: FOXP3
  hgvsc: ENST00000518685.1:c.1180C>T
  hgvsp: ENSP00000428952.1:p.Pro394Ser
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365372
  ensembl transcript: ENST00000376199
  gene symbol: FOXP3
  hgvsc: ENST00000376199.2:c.1180C>T
  hgvsp: ENSP00000365372.2:p.Pro394Ser
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365380
  ensembl transcript: ENST00000376207
  gene symbol: FOXP3
  hgvsc: ENST00000376207.4:c.1285C>T
  hgvsp: ENSP00000365380.4:p.Pro429Ser
  variant of: http://identifiers.org/hgnc/6106
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 716
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  variant carriers: 0
hgvs: p.Pro429Ser
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: African
reference allele: G
site quality: QD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum

X-49107813-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049107813
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049107813
    reference: chr 0
allele count: 8
allele frequency: 1.232020205131364e-4
allele num: 64934
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365372
  ensembl transcript: ENST00000376199
  gene symbol: FOXP3
  hgvsc: ENST00000376199.2:c.1173C>A
  hgvsp: ENSP00000365372.2:p.Asn391Lys
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365380
  ensembl transcript: ENST00000376207
  gene symbol: FOXP3
  hgvsc: ENST00000376207.4:c.1278C>A
  hgvsp: ENSP00000365380.4:p.Asn426Lys
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000451208
  ensembl transcript: ENST00000557224
  gene symbol: FOXP3
  hgvsc: ENST00000557224.1:c.1353C>A
  hgvsp: ENSP00000451208.1:p.Asn451Lys
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000428952
  ensembl transcript: ENST00000518685
  gene symbol: FOXP3
  hgvsc: ENST00000518685.1:c.1173C>A
  hgvsp: ENSP00000428952.1:p.Asn391Lys
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000396415
  ensembl transcript: ENST00000455775
  gene symbol: FOXP3
  hgvsc: ENST00000455775.2:c.1197C>A
  hgvsp: ENSP00000396415.2:p.Asn399Lys
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365369
  ensembl transcript: ENST00000376197
  gene symbol: FOXP3
  hgvsc: ENST00000376197.1:c.1308C>A
  hgvsp: ENSP00000365369.1:p.Asn436Lys
  variant of: http://identifiers.org/hgnc/6106
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19193
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7616
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2119
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
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genotype depth: GenotypeDepth
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  bin: 9.75e1
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genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 738
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 454
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 623
  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 418
  bin: 1.25e1
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genotype quality: GenotypeQuality
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  bin: 5.25e1
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genotype quality: GenotypeQuality
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  bin: 5.75e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1372
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2732
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Asn426Lys
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

X-49107837-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049107837
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049107837
    reference: chr 0
allele count: 1
allele frequency: 1.412429378531073e-5
allele num: 70800
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000451208
  ensembl transcript: ENST00000557224
  gene symbol: FOXP3
  hgvsc: ENST00000557224.1:c.1329C>G
  hgvsp: ENSP00000451208.1:p.Ser443Arg
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365380
  ensembl transcript: ENST00000376207
  gene symbol: FOXP3
  hgvsc: ENST00000376207.4:c.1254C>G
  hgvsp: ENSP00000365380.4:p.Ser418Arg
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365369
  ensembl transcript: ENST00000376197
  gene symbol: FOXP3
  hgvsc: ENST00000376197.1:c.1284C>G
  hgvsp: ENSP00000365369.1:p.Ser428Arg
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000396415
  ensembl transcript: ENST00000455775
  gene symbol: FOXP3
  hgvsc: ENST00000455775.2:c.1173C>G
  hgvsp: ENSP00000396415.2:p.Ser391Arg
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365372
  ensembl transcript: ENST00000376199
  gene symbol: FOXP3
  hgvsc: ENST00000376199.2:c.1149C>G
  hgvsp: ENSP00000365372.2:p.Ser383Arg
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000428952
  ensembl transcript: ENST00000518685
  gene symbol: FOXP3
  hgvsc: ENST00000518685.1:c.1149C>G
  hgvsp: ENSP00000428952.1:p.Ser383Arg
  variant of: http://identifiers.org/hgnc/6106
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8196
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2366
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 446
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 15813
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 546
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ser418Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
population: African
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: QD

X-49107842-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049107842
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049107842
    reference: chr 0
allele count: 3
allele frequency: 4.153168867846167e-5
allele num: 72234
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000451208
  ensembl transcript: ENST00000557224
  gene symbol: FOXP3
  hgvsc: ENST00000557224.1:c.1324C>T
  hgvsp: ENSP00000451208.1:p.Arg442Trp
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365369
  ensembl transcript: ENST00000376197
  gene symbol: FOXP3
  hgvsc: ENST00000376197.1:c.1279C>T
  hgvsp: ENSP00000365369.1:p.Arg427Trp
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000428952
  ensembl transcript: ENST00000518685
  gene symbol: FOXP3
  hgvsc: ENST00000518685.1:c.1144C>T
  hgvsp: ENSP00000428952.1:p.Arg382Trp
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365372
  ensembl transcript: ENST00000376199
  gene symbol: FOXP3
  hgvsc: ENST00000376199.2:c.1144C>T
  hgvsp: ENSP00000365372.2:p.Arg382Trp
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365380
  ensembl transcript: ENST00000376207
  gene symbol: FOXP3
  hgvsc: ENST00000376207.4:c.1249C>T
  hgvsp: ENSP00000365380.4:p.Arg417Trp
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000396415
  ensembl transcript: ENST00000455775
  gene symbol: FOXP3
  hgvsc: ENST00000455775.2:c.1168C>T
  hgvsp: ENSP00000396415.2:p.Arg390Trp
  variant of: http://identifiers.org/hgnc/6106
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 548
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
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genotype depth: GenotypeDepth
  all individuals: 13651
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8711
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 786
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3150
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 551
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 205
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 480
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg417Trp
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: African
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff

X-49107850-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049107850
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049107850
    reference: chr 0
allele count: 5
allele frequency: 6.749642268959745e-5
allele num: 74078
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000428952
  ensembl transcript: ENST00000518685
  gene symbol: FOXP3
  hgvsc: ENST00000518685.1:c.1136G>A
  hgvsp: ENSP00000428952.1:p.Arg379His
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365380
  ensembl transcript: ENST00000376207
  gene symbol: FOXP3
  hgvsc: ENST00000376207.4:c.1241G>A
  hgvsp: ENSP00000365380.4:p.Arg414His
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365372
  ensembl transcript: ENST00000376199
  gene symbol: FOXP3
  hgvsc: ENST00000376199.2:c.1136G>A
  hgvsp: ENSP00000365372.2:p.Arg379His
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000451208
  ensembl transcript: ENST00000557224
  gene symbol: FOXP3
  hgvsc: ENST00000557224.1:c.1316G>A
  hgvsp: ENSP00000451208.1:p.Arg439His
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000396415
  ensembl transcript: ENST00000455775
  gene symbol: FOXP3
  hgvsc: ENST00000455775.2:c.1160G>A
  hgvsp: ENSP00000396415.2:p.Arg387His
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365369
  ensembl transcript: ENST00000376197
  gene symbol: FOXP3
  hgvsc: ENST00000376197.1:c.1271G>A
  hgvsp: ENSP00000365369.1:p.Arg424His
  variant of: http://identifiers.org/hgnc/6106
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11868
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2408
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2564
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 2.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 345
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genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg414His
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD

X-49107851-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049107851
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049107851
    reference: chr 0
allele count: 1
allele frequency: 1.339477068152593e-5
allele num: 74656
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365380
  ensembl transcript: ENST00000376207
  gene symbol: FOXP3
  hgvsc: ENST00000376207.4:c.1240C>T
  hgvsp: ENSP00000365380.4:p.Arg414Cys
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365372
  ensembl transcript: ENST00000376199
  gene symbol: FOXP3
  hgvsc: ENST00000376199.2:c.1135C>T
  hgvsp: ENSP00000365372.2:p.Arg379Cys
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000451208
  ensembl transcript: ENST00000557224
  gene symbol: FOXP3
  hgvsc: ENST00000557224.1:c.1315C>T
  hgvsp: ENSP00000451208.1:p.Arg439Cys
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000428952
  ensembl transcript: ENST00000518685
  gene symbol: FOXP3
  hgvsc: ENST00000518685.1:c.1135C>T
  hgvsp: ENSP00000428952.1:p.Arg379Cys
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000396415
  ensembl transcript: ENST00000455775
  gene symbol: FOXP3
  hgvsc: ENST00000455775.2:c.1159C>T
  hgvsp: ENSP00000396415.2:p.Arg387Cys
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365369
  ensembl transcript: ENST00000376197
  gene symbol: FOXP3
  hgvsc: ENST00000376197.1:c.1270C>T
  hgvsp: ENSP00000365369.1:p.Arg424Cys
  variant of: http://identifiers.org/hgnc/6106
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4805
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11519
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2391
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2578
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26779
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9365
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1749
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1750
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1144
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 824
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32159
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg414Cys
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: QD

X-49107864-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049107864
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049107864
    reference: chr 0
allele count: 1
allele frequency: 1.282248551059137e-5
allele num: 77988
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000396415
  ensembl transcript: ENST00000455775
  gene symbol: FOXP3
  hgvsc: ENST00000455775.2:c.1146T>C
  hgvsp: ENST00000455775.2:c.1146T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000451208
  ensembl transcript: ENST00000557224
  gene symbol: FOXP3
  hgvsc: ENST00000557224.1:c.1302T>C
  hgvsp: ENST00000557224.1:c.1302T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365372
  ensembl transcript: ENST00000376199
  gene symbol: FOXP3
  hgvsc: ENST00000376199.2:c.1122T>C
  hgvsp: ENST00000376199.2:c.1122T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000428952
  ensembl transcript: ENST00000518685
  gene symbol: FOXP3
  hgvsc: ENST00000518685.1:c.1122T>C
  hgvsp: ENST00000518685.1:c.1122T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365369
  ensembl transcript: ENST00000376197
  gene symbol: FOXP3
  hgvsc: ENST00000376197.1:c.1257T>C
  hgvsp: ENST00000376197.1:c.1257T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365380
  ensembl transcript: ENST00000376207
  gene symbol: FOXP3
  hgvsc: ENST00000376207.4:c.1227T>C
  hgvsp: ENST00000376207.4:c.1227T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8816
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3847
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2643
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 203
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9817
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36084
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 863
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3660
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Asp409Asp
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: East Asian
reference allele: A
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

X-49107870-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049107870
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049107870
    reference: chr 0
allele count: 4
allele frequency: 5.041783783102462e-5
allele num: 79337
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000451208
  ensembl transcript: ENST00000557224
  gene symbol: FOXP3
  hgvsc: ENST00000557224.1:c.1296C>T
  hgvsp: ENST00000557224.1:c.1296C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000396415
  ensembl transcript: ENST00000455775
  gene symbol: FOXP3
  hgvsc: ENST00000455775.2:c.1140C>T
  hgvsp: ENST00000455775.2:c.1140C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365372
  ensembl transcript: ENST00000376199
  gene symbol: FOXP3
  hgvsc: ENST00000376199.2:c.1116C>T
  hgvsp: ENST00000376199.2:c.1116C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365369
  ensembl transcript: ENST00000376197
  gene symbol: FOXP3
  hgvsc: ENST00000376197.1:c.1251C>T
  hgvsp: ENST00000376197.1:c.1251C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365380
  ensembl transcript: ENST00000376207
  gene symbol: FOXP3
  hgvsc: ENST00000376207.4:c.1221C>T
  hgvsp: ENST00000376207.4:c.1221C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000428952
  ensembl transcript: ENST00000518685
  gene symbol: FOXP3
  hgvsc: ENST00000518685.1:c.1116C>T
  hgvsp: ENST00000518685.1:c.1116C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1974
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 113
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 886
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1237
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 900
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3800
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1753
  bin: 9.75e1
  variant carriers: 3
hgvs: p.Thr407Thr
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum

X-49107879-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049107879
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049107879
    reference: chr 0
allele count: 1
allele frequency: 1.23057233919496e-5
allele num: 81263
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000451208
  ensembl transcript: ENST00000557224
  gene symbol: FOXP3
  hgvsc: ENST00000557224.1:c.1287T>C
  hgvsp: ENST00000557224.1:c.1287T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365380
  ensembl transcript: ENST00000376207
  gene symbol: FOXP3
  hgvsc: ENST00000376207.4:c.1212T>C
  hgvsp: ENST00000376207.4:c.1212T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365372
  ensembl transcript: ENST00000376199
  gene symbol: FOXP3
  hgvsc: ENST00000376199.2:c.1107T>C
  hgvsp: ENST00000376199.2:c.1107T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000396415
  ensembl transcript: ENST00000455775
  gene symbol: FOXP3
  hgvsc: ENST00000455775.2:c.1131T>C
  hgvsp: ENST00000455775.2:c.1131T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000428952
  ensembl transcript: ENST00000518685
  gene symbol: FOXP3
  hgvsc: ENST00000518685.1:c.1107T>C
  hgvsp: ENST00000518685.1:c.1107T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365369
  ensembl transcript: ENST00000376197
  gene symbol: FOXP3
  hgvsc: ENST00000376197.1:c.1242T>C
  hgvsp: ENST00000376197.1:c.1242T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
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genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
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genotype depth: GenotypeDepth
  all individuals: 181
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2851
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1751
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 507
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1027
  bin: 7.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 4053
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 980
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 99
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40372
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ala404Ala
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum

X-49107891-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049107891
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049107891
    reference: chr 0
allele count: 3
allele frequency: 3.606332720256771e-5
allele num: 83187
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365369
  ensembl transcript: ENST00000376197
  gene symbol: FOXP3
  hgvsc: ENST00000376197.1:c.1230C>T
  hgvsp: ENST00000376197.1:c.1230C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000451208
  ensembl transcript: ENST00000557224
  gene symbol: FOXP3
  hgvsc: ENST00000557224.1:c.1275C>T
  hgvsp: ENST00000557224.1:c.1275C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365380
  ensembl transcript: ENST00000376207
  gene symbol: FOXP3
  hgvsc: ENST00000376207.4:c.1200C>T
  hgvsp: ENST00000376207.4:c.1200C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000428952
  ensembl transcript: ENST00000518685
  gene symbol: FOXP3
  hgvsc: ENST00000518685.1:c.1095C>T
  hgvsp: ENST00000518685.1:c.1095C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365372
  ensembl transcript: ENST00000376199
  gene symbol: FOXP3
  hgvsc: ENST00000376199.2:c.1095C>T
  hgvsp: ENST00000376199.2:c.1095C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000396415
  ensembl transcript: ENST00000455775
  gene symbol: FOXP3
  hgvsc: ENST00000455775.2:c.1119C>T
  hgvsp: ENST00000455775.2:c.1119C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34519
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1910
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4097
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12967
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3070
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 509
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43073
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 684
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 90
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 525
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ser400Ser
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
reference allele: G
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

X-49107900-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049107900
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049107900
    reference: chr 0
allele count: 1
allele frequency: 1.186661920018987e-5
allele num: 84270
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000396415
  ensembl transcript: ENST00000455775
  gene symbol: FOXP3
  hgvsc: ENST00000455775.2:c.1110G>A
  hgvsp: ENST00000455775.2:c.1110G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365380
  ensembl transcript: ENST00000376207
  gene symbol: FOXP3
  hgvsc: ENST00000376207.4:c.1191G>A
  hgvsp: ENST00000376207.4:c.1191G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000428952
  ensembl transcript: ENST00000518685
  gene symbol: FOXP3
  hgvsc: ENST00000518685.1:c.1086G>A
  hgvsp: ENST00000518685.1:c.1086G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365369
  ensembl transcript: ENST00000376197
  gene symbol: FOXP3
  hgvsc: ENST00000376197.1:c.1221G>A
  hgvsp: ENST00000376197.1:c.1221G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000451208
  ensembl transcript: ENST00000557224
  gene symbol: FOXP3
  hgvsc: ENST00000557224.1:c.1266G>A
  hgvsp: ENST00000557224.1:c.1266G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365372
  ensembl transcript: ENST00000376199
  gene symbol: FOXP3
  hgvsc: ENST00000376199.2:c.1086G>A
  hgvsp: ENST00000376199.2:c.1086G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1446
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35510
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
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genotype depth: GenotypeDepth
  all individuals: 17
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genotype quality: GenotypeQuality
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4578
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 228
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 558
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genotype quality: GenotypeQuality
  all individuals: 24
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3720
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg397Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum

X-49107942-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049107942
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049107942
    reference: chr 0
allele count: 4
allele frequency: 4.731991813654163e-5
allele num: 84531
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000451208
  ensembl transcript: ENST00000557224
  gene symbol: FOXP3
  hgvsc: ENST00000557224.1:c.1224C>T
  hgvsp: ENST00000557224.1:c.1224C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365372
  ensembl transcript: ENST00000376199
  gene symbol: FOXP3
  hgvsc: ENST00000376199.2:c.1044C>T
  hgvsp: ENST00000376199.2:c.1044C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365369
  ensembl transcript: ENST00000376197
  gene symbol: FOXP3
  hgvsc: ENST00000376197.1:c.1179C>T
  hgvsp: ENST00000376197.1:c.1179C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000428952
  ensembl transcript: ENST00000518685
  gene symbol: FOXP3
  hgvsc: ENST00000518685.1:c.1044C>T
  hgvsp: ENST00000518685.1:c.1044C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365380
  ensembl transcript: ENST00000376207
  gene symbol: FOXP3
  hgvsc: ENST00000376207.4:c.1149C>T
  hgvsp: ENST00000376207.4:c.1149C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000396415
  ensembl transcript: ENST00000455775
  gene symbol: FOXP3
  hgvsc: ENST00000455775.2:c.1068C>T
  hgvsp: ENST00000455775.2:c.1068C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13329
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33048
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 491
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4444
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 869
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genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
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genotype quality: GenotypeQuality
  all individuals: 67
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 765
  bin: 4.75e1
  variant carriers: 0
hgvs: c.1149C>T
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ

X-49107956-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049107956
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049107956
    reference: chr 0
allele count: 2
allele frequency: 2.380017374126831e-5
allele num: 84033
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365380
  ensembl transcript: ENST00000376207
  gene symbol: FOXP3
  hgvsc: ENST00000376207.4:c.1147-12G>C
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000428952
  ensembl transcript: ENST00000518685
  gene symbol: FOXP3
  hgvsc: ENST00000518685.1:c.1042-12G>C
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365369
  ensembl transcript: ENST00000376197
  gene symbol: FOXP3
  hgvsc: ENST00000376197.1:c.1165G>C
  hgvsp: ENSP00000365369.1:p.Gly389Arg
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365372
  ensembl transcript: ENST00000376199
  gene symbol: FOXP3
  hgvsc: ENST00000376199.2:c.1042-12G>C
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000451208
  ensembl transcript: ENST00000557224
  gene symbol: FOXP3
  hgvsc: ENST00000557224.1:c.1210G>C
  hgvsp: ENSP00000451208.1:p.Gly404Arg
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000396415
  ensembl transcript: ENST00000455775
  gene symbol: FOXP3
  hgvsc: ENST00000455775.2:c.1066-12G>C
  variant of: http://identifiers.org/hgnc/6106
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13602
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2941
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 326
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 1753
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gly404Arg
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

X-49107957-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049107957
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049107957
    reference: chr 0
allele count: 6
allele frequency: 7.153502235469448e-5
allele num: 83875
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365380
  ensembl transcript: ENST00000376207
  gene symbol: FOXP3
  hgvsc: ENST00000376207.4:c.1147-13C>T
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000428952
  ensembl transcript: ENST00000518685
  gene symbol: FOXP3
  hgvsc: ENST00000518685.1:c.1042-13C>T
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000451208
  ensembl transcript: ENST00000557224
  gene symbol: FOXP3
  hgvsc: ENST00000557224.1:c.1209C>T
  hgvsp: ENST00000557224.1:c.1209C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000396415
  ensembl transcript: ENST00000455775
  gene symbol: FOXP3
  hgvsc: ENST00000455775.2:c.1066-13C>T
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365372
  ensembl transcript: ENST00000376199
  gene symbol: FOXP3
  hgvsc: ENST00000376199.2:c.1042-13C>T
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365369
  ensembl transcript: ENST00000376197
  gene symbol: FOXP3
  hgvsc: ENST00000376197.1:c.1164C>T
  hgvsp: ENST00000376197.1:c.1164C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2142
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.75e1
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genotype depth: GenotypeDepth
  all individuals: 204
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2977
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 325
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 31616
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 17
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 5631
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genotype quality: GenotypeQuality
  all individuals: 509
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genotype quality: GenotypeQuality
  all individuals: 625
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Pro403Pro
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: East Asian
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum

X-49107958-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049107958
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049107958
    reference: chr 0
allele count: 1
allele frequency: 1.192136666547453e-5
allele num: 83883
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000451208
  ensembl transcript: ENST00000557224
  gene symbol: FOXP3
  hgvsc: ENST00000557224.1:c.1208C>T
  hgvsp: ENSP00000451208.1:p.Pro403Leu
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365380
  ensembl transcript: ENST00000376207
  gene symbol: FOXP3
  hgvsc: ENST00000376207.4:c.1147-14C>T
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000428952
  ensembl transcript: ENST00000518685
  gene symbol: FOXP3
  hgvsc: ENST00000518685.1:c.1042-14C>T
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365372
  ensembl transcript: ENST00000376199
  gene symbol: FOXP3
  hgvsc: ENST00000376199.2:c.1042-14C>T
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000396415
  ensembl transcript: ENST00000455775
  gene symbol: FOXP3
  hgvsc: ENST00000455775.2:c.1066-14C>T
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365369
  ensembl transcript: ENST00000376197
  gene symbol: FOXP3
  hgvsc: ENST00000376197.1:c.1163C>T
  hgvsp: ENSP00000365369.1:p.Pro388Leu
  variant of: http://identifiers.org/hgnc/6106
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4242
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13568
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro403Leu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

X-49107978-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049107978
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049107978
    reference: chr 0
allele count: 7
allele frequency: 8.533359339761798e-5
allele num: 82031
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000428952
  ensembl transcript: ENST00000518685
  gene symbol: FOXP3
  hgvsc: ENST00000518685.1:c.1042-34C>T
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000396415
  ensembl transcript: ENST00000455775
  gene symbol: FOXP3
  hgvsc: ENST00000455775.2:c.1066-34C>T
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365369
  ensembl transcript: ENST00000376197
  gene symbol: FOXP3
  hgvsc: ENST00000376197.1:c.1143C>T
  hgvsp: ENST00000376197.1:c.1143C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365380
  ensembl transcript: ENST00000376207
  gene symbol: FOXP3
  hgvsc: ENST00000376207.4:c.1147-34C>T
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000451208
  ensembl transcript: ENST00000557224
  gene symbol: FOXP3
  hgvsc: ENST00000557224.1:c.1188C>T
  hgvsp: ENST00000557224.1:c.1188C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365372
  ensembl transcript: ENST00000376199
  gene symbol: FOXP3
  hgvsc: ENST00000376199.2:c.1042-34C>T
  variant of: http://identifiers.org/hgnc/6106
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27715
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 7.5e0
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Asp396Asp
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum

X-49107984-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049107984
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049107984
    reference: chr 0
allele count: 3
allele frequency: 3.681839938145089e-5
allele num: 81481
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000428952
  ensembl transcript: ENST00000518685
  gene symbol: FOXP3
  hgvsc: ENST00000518685.1:c.1042-40G>A
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000396415
  ensembl transcript: ENST00000455775
  gene symbol: FOXP3
  hgvsc: ENST00000455775.2:c.1066-40G>A
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000451208
  ensembl transcript: ENST00000557224
  gene symbol: FOXP3
  hgvsc: ENST00000557224.1:c.1182G>A
  hgvsp: ENST00000557224.1:c.1182G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365369
  ensembl transcript: ENST00000376197
  gene symbol: FOXP3
  hgvsc: ENST00000376197.1:c.1137G>A
  hgvsp: ENST00000376197.1:c.1137G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365380
  ensembl transcript: ENST00000376207
  gene symbol: FOXP3
  hgvsc: ENST00000376207.4:c.1147-40G>A
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365372
  ensembl transcript: ENST00000376199
  gene symbol: FOXP3
  hgvsc: ENST00000376199.2:c.1042-40G>A
  variant of: http://identifiers.org/hgnc/6106
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 547
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 847
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 480
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Glu394Glu
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQ

X-49108013-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049108013
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049108013
    reference: chr 0
allele count: 1
allele frequency: 1.301744337412132e-5
allele num: 76820
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000396415
  ensembl transcript: ENST00000455775
  gene symbol: FOXP3
  hgvsc: ENST00000455775.2:c.1066-69G>A
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000428952
  ensembl transcript: ENST00000518685
  gene symbol: FOXP3
  hgvsc: ENST00000518685.1:c.1042-69G>A
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365380
  ensembl transcript: ENST00000376207
  gene symbol: FOXP3
  hgvsc: ENST00000376207.4:c.1147-69G>A
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000451208
  ensembl transcript: ENST00000557224
  gene symbol: FOXP3
  hgvsc: ENST00000557224.1:c.1153G>A
  hgvsp: ENSP00000451208.1:p.Gly385Ser
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365372
  ensembl transcript: ENST00000376199
  gene symbol: FOXP3
  hgvsc: ENST00000376199.2:c.1042-69G>A
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
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  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365369
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  gene symbol: FOXP3
  hgvsc: ENST00000376197.1:c.1108G>A
  hgvsp: ENSP00000365369.1:p.Gly370Ser
  variant of: http://identifiers.org/hgnc/6106
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2715
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Gly385Ser
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP

X-49108014-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049108014
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049108014
    reference: chr 0
allele count: 2
allele frequency: 2.611136497160389e-5
allele num: 76595
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365372
  ensembl transcript: ENST00000376199
  gene symbol: FOXP3
  hgvsc: ENST00000376199.2:c.1042-70G>A
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000396415
  ensembl transcript: ENST00000455775
  gene symbol: FOXP3
  hgvsc: ENST00000455775.2:c.1066-70G>A
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365369
  ensembl transcript: ENST00000376197
  gene symbol: FOXP3
  hgvsc: ENST00000376197.1:c.1107G>A
  hgvsp: ENST00000376197.1:c.1107G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365380
  ensembl transcript: ENST00000376207
  gene symbol: FOXP3
  hgvsc: ENST00000376207.4:c.1147-70G>A
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000428952
  ensembl transcript: ENST00000518685
  gene symbol: FOXP3
  hgvsc: ENST00000518685.1:c.1042-70G>A
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000451208
  ensembl transcript: ENST00000557224
  gene symbol: FOXP3
  hgvsc: ENST00000557224.1:c.1152G>A
  hgvsp: ENST00000557224.1:c.1152G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16549
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Val384Val
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Other
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum

X-49108016-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049108016
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049108016
    reference: chr 0
allele count: 1
allele frequency: 1.313887793982394e-5
allele num: 76110
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365380
  ensembl transcript: ENST00000376207
  gene symbol: FOXP3
  hgvsc: ENST00000376207.4:c.1147-72G>A
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000451208
  ensembl transcript: ENST00000557224
  gene symbol: FOXP3
  hgvsc: ENST00000557224.1:c.1150G>A
  hgvsp: ENSP00000451208.1:p.Val384Met
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365372
  ensembl transcript: ENST00000376199
  gene symbol: FOXP3
  hgvsc: ENST00000376199.2:c.1042-72G>A
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000396415
  ensembl transcript: ENST00000455775
  gene symbol: FOXP3
  hgvsc: ENST00000455775.2:c.1066-72G>A
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365369
  ensembl transcript: ENST00000376197
  gene symbol: FOXP3
  hgvsc: ENST00000376197.1:c.1105G>A
  hgvsp: ENSP00000365369.1:p.Val369Met
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000428952
  ensembl transcript: ENST00000518685
  gene symbol: FOXP3
  hgvsc: ENST00000518685.1:c.1042-72G>A
  variant of: http://identifiers.org/hgnc/6106
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 113
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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hgvs: p.Val384Met
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

X-49108019-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049108019
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049108019
    reference: chr 0
allele count: 1
allele frequency: 1.32890365448505e-5
allele num: 75250
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000428952
  ensembl transcript: ENST00000518685
  gene symbol: FOXP3
  hgvsc: ENST00000518685.1:c.1042-75G>T
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365380
  ensembl transcript: ENST00000376207
  gene symbol: FOXP3
  hgvsc: ENST00000376207.4:c.1147-75G>T
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365369
  ensembl transcript: ENST00000376197
  gene symbol: FOXP3
  hgvsc: ENST00000376197.1:c.1102G>T
  hgvsp: ENSP00000365369.1:p.Asp368Tyr
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
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  ensembl protein: ENSP00000451208
  ensembl transcript: ENST00000557224
  gene symbol: FOXP3
  hgvsc: ENST00000557224.1:c.1147G>T
  hgvsp: ENSP00000451208.1:p.Asp383Tyr
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: intron_variant
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  ensembl protein: ENSP00000396415
  ensembl transcript: ENST00000455775
  gene symbol: FOXP3
  hgvsc: ENST00000455775.2:c.1066-75G>T
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365372
  ensembl transcript: ENST00000376199
  gene symbol: FOXP3
  hgvsc: ENST00000376199.2:c.1042-75G>T
  variant of: http://identifiers.org/hgnc/6106
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 445
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1504
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 613
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4313
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4204
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1200
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 683
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1291
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18730
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16543
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Asp383Tyr
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Other
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum

X-49108021-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049108021
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049108021
    reference: chr 0
allele count: 9
allele frequency: 1.199648103223055e-4
allele num: 75022
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365369
  ensembl transcript: ENST00000376197
  gene symbol: FOXP3
  hgvsc: ENST00000376197.1:c.1100G>A
  hgvsp: ENSP00000365369.1:p.Arg367Gln
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365380
  ensembl transcript: ENST00000376207
  gene symbol: FOXP3
  hgvsc: ENST00000376207.4:c.1147-77G>A
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365372
  ensembl transcript: ENST00000376199
  gene symbol: FOXP3
  hgvsc: ENST00000376199.2:c.1042-77G>A
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000396415
  ensembl transcript: ENST00000455775
  gene symbol: FOXP3
  hgvsc: ENST00000455775.2:c.1066-77G>A
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000451208
  ensembl transcript: ENST00000557224
  gene symbol: FOXP3
  hgvsc: ENST00000557224.1:c.1145G>A
  hgvsp: ENSP00000451208.1:p.Arg382Gln
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000428952
  ensembl transcript: ENST00000518685
  gene symbol: FOXP3
  hgvsc: ENST00000518685.1:c.1042-77G>A
  variant of: http://identifiers.org/hgnc/6106
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10069
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15029
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8669
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5551
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  variant carriers: 2
genotype depth: GenotypeDepth
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  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2254
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genotype depth: GenotypeDepth
  all individuals: 37
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genotype depth: GenotypeDepth
  all individuals: 37
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16904
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 1202
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 1743
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 19550
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  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 632
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1172
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4228
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1148
  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 843
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 699
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2514
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg382Gln
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff

X-49108033-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049108033
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049108033
    reference: chr 0
allele count: 6
allele frequency: 8.153724893322099e-5
allele num: 73586
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365372
  ensembl transcript: ENST00000376199
  gene symbol: FOXP3
  hgvsc: ENST00000376199.2:c.1042-89T>C
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365380
  ensembl transcript: ENST00000376207
  gene symbol: FOXP3
  hgvsc: ENST00000376207.4:c.1147-89T>C
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000451208
  ensembl transcript: ENST00000557224
  gene symbol: FOXP3
  hgvsc: ENST00000557224.1:c.1133T>C
  hgvsp: ENSP00000451208.1:p.Ile378Thr
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365369
  ensembl transcript: ENST00000376197
  gene symbol: FOXP3
  hgvsc: ENST00000376197.1:c.1088T>C
  hgvsp: ENSP00000365369.1:p.Ile363Thr
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000396415
  ensembl transcript: ENST00000455775
  gene symbol: FOXP3
  hgvsc: ENST00000455775.2:c.1066-89T>C
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000428952
  ensembl transcript: ENST00000518685
  gene symbol: FOXP3
  hgvsc: ENST00000518685.1:c.1042-89T>C
  variant of: http://identifiers.org/hgnc/6106
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13691
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7822
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  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 447
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6258
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2075
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 542
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 17406
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 1049
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 846
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 883
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 218
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2632
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ile378Thr
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: DP

X-49108035-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049108035
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049108035
    reference: chr 0
allele count: 37
allele frequency: 5.047404679080553e-4
allele num: 73305
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000451208
  ensembl transcript: ENST00000557224
  gene symbol: FOXP3
  hgvsc: ENST00000557224.1:c.1131C>T
  hgvsp: ENST00000557224.1:c.1131C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365369
  ensembl transcript: ENST00000376197
  gene symbol: FOXP3
  hgvsc: ENST00000376197.1:c.1086C>T
  hgvsp: ENST00000376197.1:c.1086C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365372
  ensembl transcript: ENST00000376199
  gene symbol: FOXP3
  hgvsc: ENST00000376199.2:c.1041+90C>T
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000396415
  ensembl transcript: ENST00000455775
  gene symbol: FOXP3
  hgvsc: ENST00000455775.2:c.1065+90C>T
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000428952
  ensembl transcript: ENST00000518685
  gene symbol: FOXP3
  hgvsc: ENST00000518685.1:c.1041+90C>T
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365380
  ensembl transcript: ENST00000376207
  gene symbol: FOXP3
  hgvsc: ENST00000376207.4:c.1146+90C>T
  variant of: http://identifiers.org/hgnc/6106
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15313
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 11234
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1607
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 2084
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1387
  bin: 1.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 909
  bin: 1.25e1
  variant carriers: 1
hgvs: p.His377His
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: Latino
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum

X-49108047-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049108047
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049108047
    reference: chr 0
allele count: 1
allele frequency: 1.388175520912864e-5
allele num: 72037
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365372
  ensembl transcript: ENST00000376199
  gene symbol: FOXP3
  hgvsc: ENST00000376199.2:c.1041+78G>A
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000451208
  ensembl transcript: ENST00000557224
  gene symbol: FOXP3
  hgvsc: ENST00000557224.1:c.1119G>A
  hgvsp: ENSP00000451208.1:p.Trp373Ter
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365369
  ensembl transcript: ENST00000376197
  gene symbol: FOXP3
  hgvsc: ENST00000376197.1:c.1074G>A
  hgvsp: ENSP00000365369.1:p.Trp358Ter
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000428952
  ensembl transcript: ENST00000518685
  gene symbol: FOXP3
  hgvsc: ENST00000518685.1:c.1041+78G>A
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365380
  ensembl transcript: ENST00000376207
  gene symbol: FOXP3
  hgvsc: ENST00000376207.4:c.1146+78G>A
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000396415
  ensembl transcript: ENST00000455775
  gene symbol: FOXP3
  hgvsc: ENST00000455775.2:c.1065+78G>A
  variant of: http://identifiers.org/hgnc/6106
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1913
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12593
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7333
  bin: 2.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 8
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 1150
  bin: 1.25e1
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genotype quality: GenotypeQuality
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  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 320
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genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2868
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 16986
  bin: 2.25e1
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hgvs: p.Trp373Ter
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: QD
site quality: FS

X-49108076-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049108076
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049108076
    reference: chr 0
allele count: 1
allele frequency: 1.405283867341203e-5
allele num: 71160
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000451208
  ensembl transcript: ENST00000557224
  gene symbol: FOXP3
  hgvsc: ENST00000557224.1:c.1090G>A
  hgvsp: ENSP00000451208.1:p.Ala364Thr
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365372
  ensembl transcript: ENST00000376199
  gene symbol: FOXP3
  hgvsc: ENST00000376199.2:c.1041+49G>A
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365369
  ensembl transcript: ENST00000376197
  gene symbol: FOXP3
  hgvsc: ENST00000376197.1:c.1045G>A
  hgvsp: ENSP00000365369.1:p.Ala349Thr
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000428952
  ensembl transcript: ENST00000518685
  gene symbol: FOXP3
  hgvsc: ENST00000518685.1:c.1041+49G>A
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365380
  ensembl transcript: ENST00000376207
  gene symbol: FOXP3
  hgvsc: ENST00000376207.4:c.1146+49G>A
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000396415
  ensembl transcript: ENST00000455775
  gene symbol: FOXP3
  hgvsc: ENST00000455775.2:c.1065+49G>A
  variant of: http://identifiers.org/hgnc/6106
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 965
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  variant carriers: 0
hgvs: p.Ala364Thr
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: Latino
reference allele: C
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum

X-49108100-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049108100
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049108100
    reference: chr 0
allele count: 1
allele frequency: 1.372156206262521e-5
allele num: 72878
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000396415
  ensembl transcript: ENST00000455775
  gene symbol: FOXP3
  hgvsc: ENST00000455775.2:c.1065+25A>T
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000451208
  ensembl transcript: ENST00000557224
  gene symbol: FOXP3
  hgvsc: ENST00000557224.1:c.1066A>T
  hgvsp: ENSP00000451208.1:p.Thr356Ser
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365380
  ensembl transcript: ENST00000376207
  gene symbol: FOXP3
  hgvsc: ENST00000376207.4:c.1146+25A>T
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365372
  ensembl transcript: ENST00000376199
  gene symbol: FOXP3
  hgvsc: ENST00000376199.2:c.1041+25A>T
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365369
  ensembl transcript: ENST00000376197
  gene symbol: FOXP3
  hgvsc: ENST00000376197.1:c.1021A>T
  hgvsp: ENSP00000365369.1:p.Thr341Ser
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000428952
  ensembl transcript: ENST00000518685
  gene symbol: FOXP3
  hgvsc: ENST00000518685.1:c.1041+25A>T
  variant of: http://identifiers.org/hgnc/6106
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4347
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 984
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genotype depth: GenotypeDepth
  all individuals: 8828
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1127
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  variant carriers: 0
hgvs: p.Thr356Ser
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: FS

X-49108104-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049108104
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049108104
    reference: chr 0
allele count: 1
allele frequency: 1.366120218579235e-5
allele num: 73200
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000396415
  ensembl transcript: ENST00000455775
  gene symbol: FOXP3
  hgvsc: ENST00000455775.2:c.1065+21G>A
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000428952
  ensembl transcript: ENST00000518685
  gene symbol: FOXP3
  hgvsc: ENST00000518685.1:c.1041+21G>A
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365369
  ensembl transcript: ENST00000376197
  gene symbol: FOXP3
  hgvsc: ENST00000376197.1:c.1017G>A
  hgvsp: ENST00000376197.1:c.1017G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000451208
  ensembl transcript: ENST00000557224
  gene symbol: FOXP3
  hgvsc: ENST00000557224.1:c.1062G>A
  hgvsp: ENST00000557224.1:c.1062G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365372
  ensembl transcript: ENST00000376199
  gene symbol: FOXP3
  hgvsc: ENST00000376199.2:c.1041+21G>A
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365380
  ensembl transcript: ENST00000376207
  gene symbol: FOXP3
  hgvsc: ENST00000376207.4:c.1146+21G>A
  variant of: http://identifiers.org/hgnc/6106
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 741
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  variant carriers: 0
hgvs: p.Ala354Ala
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: QD

X-49108105-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049108105
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049108105
    reference: chr 0
allele count: 1
allele frequency: 1.361025668944116e-5
allele num: 73474
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000396415
  ensembl transcript: ENST00000455775
  gene symbol: FOXP3
  hgvsc: ENST00000455775.2:c.1065+20C>T
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365369
  ensembl transcript: ENST00000376197
  gene symbol: FOXP3
  hgvsc: ENST00000376197.1:c.1016C>T
  hgvsp: ENSP00000365369.1:p.Ala339Val
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365380
  ensembl transcript: ENST00000376207
  gene symbol: FOXP3
  hgvsc: ENST00000376207.4:c.1146+20C>T
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365372
  ensembl transcript: ENST00000376199
  gene symbol: FOXP3
  hgvsc: ENST00000376199.2:c.1041+20C>T
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000451208
  ensembl transcript: ENST00000557224
  gene symbol: FOXP3
  hgvsc: ENST00000557224.1:c.1061C>T
  hgvsp: ENSP00000451208.1:p.Ala354Val
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000428952
  ensembl transcript: ENST00000518685
  gene symbol: FOXP3
  hgvsc: ENST00000518685.1:c.1041+20C>T
  variant of: http://identifiers.org/hgnc/6106
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12159
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 650
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 726
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2703
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3268
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 747
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3306
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15818
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 869
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24739
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ala354Val
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum

X-49108108-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049108108
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049108108
    reference: chr 0
allele count: 3
allele frequency: 4.03866347163512e-5
allele num: 74282
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365380
  ensembl transcript: ENST00000376207
  gene symbol: FOXP3
  hgvsc: ENST00000376207.4:c.1146+17T>C
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000451208
  ensembl transcript: ENST00000557224
  gene symbol: FOXP3
  hgvsc: ENST00000557224.1:c.1058T>C
  hgvsp: ENSP00000451208.1:p.Val353Ala
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365369
  ensembl transcript: ENST00000376197
  gene symbol: FOXP3
  hgvsc: ENST00000376197.1:c.1013T>C
  hgvsp: ENSP00000365369.1:p.Val338Ala
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365372
  ensembl transcript: ENST00000376199
  gene symbol: FOXP3
  hgvsc: ENST00000376199.2:c.1041+17T>C
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000396415
  ensembl transcript: ENST00000455775
  gene symbol: FOXP3
  hgvsc: ENST00000455775.2:c.1065+17T>C
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000428952
  ensembl transcript: ENST00000518685
  gene symbol: FOXP3
  hgvsc: ENST00000518685.1:c.1041+17T>C
  variant of: http://identifiers.org/hgnc/6106
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19934
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 9615
  bin: 2.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 182
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 326
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1705
  bin: 3.75e1
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genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3076
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 437
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 775
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genotype quality: GenotypeQuality
  all individuals: 324
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26115
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Val353Ala
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum

X-49108116-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049108116
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049108116
    reference: chr 0
allele count: 1
allele frequency: 1.324240217175396e-5
allele num: 75515
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365372
  ensembl transcript: ENST00000376199
  gene symbol: FOXP3
  hgvsc: ENST00000376199.2:c.1041+9C>G
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365369
  ensembl transcript: ENST00000376197
  gene symbol: FOXP3
  hgvsc: ENST00000376197.1:c.1005C>G
  hgvsp: ENST00000376197.1:c.1005C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000451208
  ensembl transcript: ENST00000557224
  gene symbol: FOXP3
  hgvsc: ENST00000557224.1:c.1050C>G
  hgvsp: ENST00000557224.1:c.1050C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000428952
  ensembl transcript: ENST00000518685
  gene symbol: FOXP3
  hgvsc: ENST00000518685.1:c.1041+9C>G
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365380
  ensembl transcript: ENST00000376207
  gene symbol: FOXP3
  hgvsc: ENST00000376207.4:c.1146+9C>G
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000396415
  ensembl transcript: ENST00000455775
  gene symbol: FOXP3
  hgvsc: ENST00000455775.2:c.1065+9C>G
  variant of: http://identifiers.org/hgnc/6106
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8692
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11077
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22474
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2635
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2398
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10195
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2542
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1742
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 532
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1436
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2933
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 738
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 14334
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser350Ser
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: DP

19-56370586-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56370586
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 56370586
    reference: chr 19
allele count: 1
allele frequency: 8.36946150884652e-6
allele num: 119482
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160505
  ensembl protein: ENSP00000344787
  ensembl transcript: ENST00000346986
  gene symbol: NLRP4
  hgvsc: ENST00000346986.5:c.1827C>G
  hgvsp: ENST00000346986.5:c.1827C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/22943
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000160505
  ensembl protein: ENSP00000301295
  ensembl transcript: ENST00000301295
  gene symbol: NLRP4
  hgvsc: ENST00000301295.6:c.1827C>G
  hgvsp: ENST00000301295.6:c.1827C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/22943
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160505
  ensembl protein: ENSP00000468754
  ensembl transcript: ENST00000589437
  gene symbol: NLRP4
  hgvsc: ENST00000589437.1:c.524C>G
  hgvsp: ENST00000589437.1:c.524C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/22943
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000160505
  ensembl protein: ENSP00000465463
  ensembl transcript: ENST00000587891
  gene symbol: NLRP4
  hgvsc: ENST00000587891.1:c.1602C>G
  hgvsp: ENST00000587891.1:c.1602C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/22943
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5575
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6178
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7764
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6841
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3802
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6142
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7261
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6979
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1561
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2383
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 30586
  bin: 9.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2959
  bin: 8.25e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3530
  bin: 6.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 69
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Val609Val
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Other
population: East Asian
population: Latino
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/19-56370594-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56370594
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 56370594
    reference: chr 19
allele count: 1
allele frequency: 8.421761832575375e-6
allele num: 118740
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160505
  ensembl protein: ENSP00000468754
  ensembl transcript: ENST00000589437
  gene symbol: NLRP4
  hgvsc: ENST00000589437.1:c.532A>C
  hgvsp: ENSP00000468754.1:p.Lys178Thr
  variant of: http://identifiers.org/hgnc/22943
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160505
  ensembl protein: ENSP00000344787
  ensembl transcript: ENST00000346986
  gene symbol: NLRP4
  hgvsc: ENST00000346986.5:c.1835A>C
  hgvsp: ENSP00000344787.5:p.Lys612Thr
  variant of: http://identifiers.org/hgnc/22943
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160505
  ensembl protein: ENSP00000465463
  ensembl transcript: ENST00000587891
  gene symbol: NLRP4
  hgvsc: ENST00000587891.1:c.1610A>C
  hgvsp: ENSP00000465463.1:p.Lys537Thr
  variant of: http://identifiers.org/hgnc/22943
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160505
  ensembl protein: ENSP00000301295
  ensembl transcript: ENST00000301295
  gene symbol: NLRP4
  hgvsc: ENST00000301295.6:c.1835A>C
  hgvsp: ENSP00000301295.4:p.Lys612Thr
  variant of: http://identifiers.org/hgnc/22943
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1561
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5575
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2383
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1569
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5969
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5979
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2759
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10470
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1832
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2347
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3231
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2023
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2957
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Lys612Thr
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: A
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum

19-56370597-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56370597
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 56370597
    reference: chr 19
allele count: 2
allele frequency: 1.688048615800135e-5
allele num: 118480
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160505
  ensembl protein: ENSP00000468754
  ensembl transcript: ENST00000589437
  gene symbol: NLRP4
  hgvsc: ENST00000589437.1:c.535A>T
  hgvsp: ENSP00000468754.1:p.Glu179Val
  variant of: http://identifiers.org/hgnc/22943
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160505
  ensembl protein: ENSP00000301295
  ensembl transcript: ENST00000301295
  gene symbol: NLRP4
  hgvsc: ENST00000301295.6:c.1838A>T
  hgvsp: ENSP00000301295.4:p.Glu613Val
  variant of: http://identifiers.org/hgnc/22943
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160505
  ensembl protein: ENSP00000465463
  ensembl transcript: ENST00000587891
  gene symbol: NLRP4
  hgvsc: ENST00000587891.1:c.1613A>T
  hgvsp: ENSP00000465463.1:p.Glu538Val
  variant of: http://identifiers.org/hgnc/22943
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160505
  ensembl protein: ENSP00000344787
  ensembl transcript: ENST00000346986
  gene symbol: NLRP4
  hgvsc: ENST00000346986.5:c.1838A>T
  hgvsp: ENSP00000344787.5:p.Glu613Val
  variant of: http://identifiers.org/hgnc/22943
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5927
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6517
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5908
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6980
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3801
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1683
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5575
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1561
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6823
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2383
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3231
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10310
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2023
  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 1829
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30586
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2535
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 2955
  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 64
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Glu613Val
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
reference allele: A
site quality: MQ
site quality: FS
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

19-56370600-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56370600
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 56370600
    reference: chr 19
allele count: 2
allele frequency: 1.693480101608806e-5
allele num: 118100
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160505
  ensembl protein: ENSP00000465463
  ensembl transcript: ENST00000587891
  gene symbol: NLRP4
  hgvsc: ENST00000587891.1:c.1616A>G
  hgvsp: ENSP00000465463.1:p.Asp539Gly
  variant of: http://identifiers.org/hgnc/22943
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160505
  ensembl protein: ENSP00000301295
  ensembl transcript: ENST00000301295
  gene symbol: NLRP4
  hgvsc: ENST00000301295.6:c.1841A>G
  hgvsp: ENSP00000301295.4:p.Asp614Gly
  variant of: http://identifiers.org/hgnc/22943
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160505
  ensembl protein: ENSP00000468754
  ensembl transcript: ENST00000589437
  gene symbol: NLRP4
  hgvsc: ENST00000589437.1:c.538A>G
  hgvsp: ENSP00000468754.1:p.Asp180Gly
  variant of: http://identifiers.org/hgnc/22943
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160505
  ensembl protein: ENSP00000344787
  ensembl transcript: ENST00000346986
  gene symbol: NLRP4
  hgvsc: ENST00000346986.5:c.1841A>G
  hgvsp: ENSP00000344787.5:p.Asp614Gly
  variant of: http://identifiers.org/hgnc/22943
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7758
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6281
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6979
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5728
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1920
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5895
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6819
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5575
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3800
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2384
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1822
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2953
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2021
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2859
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3302
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Asp614Gly
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: Other
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum

19-56370608-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56370608
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 56370608
    reference: chr 19
allele count: 55
allele frequency: 4.706566944496739e-4
allele num: 116858
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160505
  ensembl protein: ENSP00000301295
  ensembl transcript: ENST00000301295
  gene symbol: NLRP4
  hgvsc: ENST00000301295.6:c.1849A>G
  hgvsp: ENSP00000301295.4:p.Ser617Gly
  variant of: http://identifiers.org/hgnc/22943
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160505
  ensembl protein: ENSP00000344787
  ensembl transcript: ENST00000346986
  gene symbol: NLRP4
  hgvsc: ENST00000346986.5:c.1849A>G
  hgvsp: ENSP00000344787.5:p.Ser617Gly
  variant of: http://identifiers.org/hgnc/22943
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160505
  ensembl protein: ENSP00000465463
  ensembl transcript: ENST00000587891
  gene symbol: NLRP4
  hgvsc: ENST00000587891.1:c.1624A>G
  hgvsp: ENSP00000465463.1:p.Ser542Gly
  variant of: http://identifiers.org/hgnc/22943
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160505
  ensembl protein: ENSP00000468754
  ensembl transcript: ENST00000589437
  gene symbol: NLRP4
  hgvsc: ENST00000589437.1:c.546A>G
  hgvsp: ENSP00000468754.1:p.Ser183Gly
  variant of: http://identifiers.org/hgnc/22943
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5743
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5570
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2624
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6805
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5206
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 6979
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5515
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3798
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1561
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1991
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 7750
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2384
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 9.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 30610
  bin: 9.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 8688
  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 196
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2945
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2017
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ser617Gly
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: European (Finnish)
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: QD

X-49108147-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049108147
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049108147
    reference: chr 0
allele count: 1
allele frequency: 1.24480294769338e-5
allele num: 80334
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365369
  ensembl transcript: ENST00000376197
  gene symbol: FOXP3
  hgvsc: ENST00000376197.1:c.974G>A
  hgvsp: ENSP00000365369.1:p.Arg325Lys
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365380
  ensembl transcript: ENST00000376207
  gene symbol: FOXP3
  hgvsc: ENST00000376207.4:c.1124G>A
  hgvsp: ENSP00000365380.4:p.Arg375Lys
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000428952
  ensembl transcript: ENST00000518685
  gene symbol: FOXP3
  hgvsc: ENST00000518685.1:c.1019G>A
  hgvsp: ENSP00000428952.1:p.Arg340Lys
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000396415
  ensembl transcript: ENST00000455775
  gene symbol: FOXP3
  hgvsc: ENST00000455775.2:c.1043G>A
  hgvsp: ENSP00000396415.2:p.Arg348Lys
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365372
  ensembl transcript: ENST00000376199
  gene symbol: FOXP3
  hgvsc: ENST00000376199.2:c.1019G>A
  hgvsp: ENSP00000365372.2:p.Arg340Lys
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000451208
  ensembl transcript: ENST00000557224
  gene symbol: FOXP3
  hgvsc: ENST00000557224.1:c.1019G>A
  hgvsp: ENSP00000451208.1:p.Arg340Lys
  variant of: http://identifiers.org/hgnc/6106
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30945
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6718
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3801
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12232
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2572
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 8415
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1018
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 810
  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 193
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 990
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 536
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 635
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 842
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Arg375Lys
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

X-49108165-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049108165
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049108165
    reference: chr 0
allele count: 3
allele frequency: 3.667078194330697e-5
allele num: 81809
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365369
  ensembl transcript: ENST00000376197
  gene symbol: FOXP3
  hgvsc: ENST00000376197.1:c.956G>A
  hgvsp: ENSP00000365369.1:p.Arg319His
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000451208
  ensembl transcript: ENST00000557224
  gene symbol: FOXP3
  hgvsc: ENST00000557224.1:c.1001G>A
  hgvsp: ENSP00000451208.1:p.Arg334His
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365380
  ensembl transcript: ENST00000376207
  gene symbol: FOXP3
  hgvsc: ENST00000376207.4:c.1106G>A
  hgvsp: ENSP00000365380.4:p.Arg369His
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000396415
  ensembl transcript: ENST00000455775
  gene symbol: FOXP3
  hgvsc: ENST00000455775.2:c.1025G>A
  hgvsp: ENSP00000396415.2:p.Arg342His
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365372
  ensembl transcript: ENST00000376199
  gene symbol: FOXP3
  hgvsc: ENST00000376199.2:c.1001G>A
  hgvsp: ENSP00000365372.2:p.Arg334His
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000428952
  ensembl transcript: ENST00000518685
  gene symbol: FOXP3
  hgvsc: ENST00000518685.1:c.1001G>A
  hgvsp: ENSP00000428952.1:p.Arg334His
  variant of: http://identifiers.org/hgnc/6106
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
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genotype depth: GenotypeDepth
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  bin: 2.25e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13069
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2764
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2372
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genotype depth: GenotypeDepth
  all individuals: 550
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 818
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genotype depth: GenotypeDepth
  all individuals: 17
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 37
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genotype depth: GenotypeDepth
  all individuals: 37
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
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genotype quality: GenotypeQuality
  all individuals: 523
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genotype quality: GenotypeQuality
  all individuals: 226
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 6283
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 368
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 582
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg369His
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

X-49108209-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049108209
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049108209
    reference: chr 0
allele count: 1
allele frequency: 1.261909268723579e-5
allele num: 79245
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365369
  ensembl transcript: ENST00000376197
  gene symbol: FOXP3
  hgvsc: ENST00000376197.1:c.912A>G
  hgvsp: ENST00000376197.1:c.912A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000451208
  ensembl transcript: ENST00000557224
  gene symbol: FOXP3
  hgvsc: ENST00000557224.1:c.957A>G
  hgvsp: ENST00000557224.1:c.957A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000428952
  ensembl transcript: ENST00000518685
  gene symbol: FOXP3
  hgvsc: ENST00000518685.1:c.957A>G
  hgvsp: ENST00000518685.1:c.957A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000396415
  ensembl transcript: ENST00000455775
  gene symbol: FOXP3
  hgvsc: ENST00000455775.2:c.981A>G
  hgvsp: ENST00000455775.2:c.981A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365380
  ensembl transcript: ENST00000376207
  gene symbol: FOXP3
  hgvsc: ENST00000376207.4:c.1062A>G
  hgvsp: ENST00000376207.4:c.1062A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365372
  ensembl transcript: ENST00000376199
  gene symbol: FOXP3
  hgvsc: ENST00000376199.2:c.957A>G
  hgvsp: ENST00000376199.2:c.957A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2675
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6836
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 37
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genotype depth: GenotypeDepth
  all individuals: 36
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genotype quality: GenotypeQuality
  all individuals: 169
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 757
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genotype quality: GenotypeQuality
  all individuals: 181
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  variant carriers: 0
hgvs: p.Pro354Pro
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff

X-49108220-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049108220
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049108220
    reference: chr 0
allele count: 2
allele frequency: 2.601355306114486e-5
allele num: 76883
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365380
  ensembl transcript: ENST00000376207
  gene symbol: FOXP3
  hgvsc: ENST00000376207.4:c.1051C>T
  hgvsp: ENST00000376207.4:c.1051C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000396415
  ensembl transcript: ENST00000455775
  gene symbol: FOXP3
  hgvsc: ENST00000455775.2:c.970C>T
  hgvsp: ENST00000455775.2:c.970C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365372
  ensembl transcript: ENST00000376199
  gene symbol: FOXP3
  hgvsc: ENST00000376199.2:c.946C>T
  hgvsp: ENST00000376199.2:c.946C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365369
  ensembl transcript: ENST00000376197
  gene symbol: FOXP3
  hgvsc: ENST00000376197.1:c.901C>T
  hgvsp: ENST00000376197.1:c.901C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000451208
  ensembl transcript: ENST00000557224
  gene symbol: FOXP3
  hgvsc: ENST00000557224.1:c.946C>T
  hgvsp: ENST00000557224.1:c.946C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000428952
  ensembl transcript: ENST00000518685
  gene symbol: FOXP3
  hgvsc: ENST00000518685.1:c.946C>T
  hgvsp: ENST00000518685.1:c.946C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6106
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1908
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8592
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 539
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
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genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 642
  bin: 5.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 319
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genotype quality: GenotypeQuality
  all individuals: 422
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genotype quality: GenotypeQuality
  all individuals: 998
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 1594
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Leu351Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP

X-49108228-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 24049108228
    reference: chr 0
  end: Position
    type: ExactPosition
    position: 24049108227
    reference: chr 0
allele count: 1
allele frequency: 1.327809645209263e-5
allele num: 75312
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365369
  ensembl transcript: ENST00000376197
  gene symbol: FOXP3
  hgvsc: ENST00000376197.1:c.895-3delC
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365372
  ensembl transcript: ENST00000376199
  gene symbol: FOXP3
  hgvsc: ENST00000376199.2:c.940-3delC
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000396415
  ensembl transcript: ENST00000455775
  gene symbol: FOXP3
  hgvsc: ENST00000455775.2:c.964-3delC
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000365380
  ensembl transcript: ENST00000376207
  gene symbol: FOXP3
  hgvsc: ENST00000376207.4:c.1045-3delC
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000428952
  ensembl transcript: ENST00000518685
  gene symbol: FOXP3
  hgvsc: ENST00000518685.1:c.940-3delC
  variant of: http://identifiers.org/hgnc/6106
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049768
  ensembl protein: ENSP00000451208
  ensembl transcript: ENST00000557224
  gene symbol: FOXP3
  hgvsc: ENST00000557224.1:c.940-3delC
  variant of: http://identifiers.org/hgnc/6106
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11678
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2561
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9602
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10848
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1218
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19524
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2247
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2033
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28756
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17090
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1775
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 700
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 714
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 9.25e1
  variant carriers: 0
hgvs: c.1045-3delC
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: TG
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQ

19-56370609-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56370609
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 56370609
    reference: chr 19
allele count: 1
allele frequency: 8.564430208458231e-6
allele num: 116762
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160505
  ensembl protein: ENSP00000468754
  ensembl transcript: ENST00000589437
  gene symbol: NLRP4
  hgvsc: ENST00000589437.1:c.547G>A
  hgvsp: ENSP00000468754.1:p.Ser183Asn
  variant of: http://identifiers.org/hgnc/22943
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160505
  ensembl protein: ENSP00000344787
  ensembl transcript: ENST00000346986
  gene symbol: NLRP4
  hgvsc: ENST00000346986.5:c.1850G>A
  hgvsp: ENSP00000344787.5:p.Ser617Asn
  variant of: http://identifiers.org/hgnc/22943
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000160505
  ensembl protein: ENSP00000301295
  ensembl transcript: ENST00000301295
  gene symbol: NLRP4
  hgvsc: ENST00000301295.6:c.1850G>A
  hgvsp: ENSP00000301295.4:p.Ser617Asn
  variant of: http://identifiers.org/hgnc/22943
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000160505
  ensembl protein: ENSP00000465463
  ensembl transcript: ENST00000587891
  gene symbol: NLRP4
  hgvsc: ENST00000587891.1:c.1625G>A
  hgvsp: ENSP00000465463.1:p.Ser542Asn
  variant of: http://identifiers.org/hgnc/22943
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6806
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7753
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6979
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2384
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5446
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2684
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2031
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5155
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3804
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5738
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5572
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2020
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2943
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2726
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8564
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 512
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30587
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1779
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ser617Asn
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

19-56370615-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56370615
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 56370615
    reference: chr 19
allele count: 10
allele frequency: 8.622771013692961e-5
allele num: 115972
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000160505
  ensembl protein: ENSP00000344787
  ensembl transcript: ENST00000346986
  gene symbol: NLRP4
  hgvsc: ENST00000346986.5:c.1856C>T
  hgvsp: ENSP00000344787.5:p.Thr619Met
  variant of: http://identifiers.org/hgnc/22943
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000160505
  ensembl protein: ENSP00000468754
  ensembl transcript: ENST00000589437
  gene symbol: NLRP4
  hgvsc: ENST00000589437.1:c.553C>T
  hgvsp: ENSP00000468754.1:p.Thr185Met
  variant of: http://identifiers.org/hgnc/22943
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000160505
  ensembl protein: ENSP00000465463
  ensembl transcript: ENST00000587891
  gene symbol: NLRP4
  hgvsc: ENST00000587891.1:c.1631C>T
  hgvsp: ENSP00000465463.1:p.Thr544Met
  variant of: http://identifiers.org/hgnc/22943
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000160505
  ensembl protein: ENSP00000301295
  ensembl transcript: ENST00000301295
  gene symbol: NLRP4
  hgvsc: ENST00000301295.6:c.1856C>T
  hgvsp: ENSP00000301295.4:p.Thr619Met
  variant of: http://identifiers.org/hgnc/22943
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4986
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5570
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5081
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6979
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5611
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2385
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6796
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3805
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2256
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3012
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7753
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2020
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 515
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8046
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 552
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2714
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4281
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2939
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3228
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3003
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Thr619Met
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: DP

19-56370616-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56370616
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 56370616
    reference: chr 19
allele count: 4
allele frequency: 3.45393316639323e-5
allele num: 115810
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000160505
  ensembl protein: ENSP00000465463
  ensembl transcript: ENST00000587891
  gene symbol: NLRP4
  hgvsc: ENST00000587891.1:c.1631+1G>A
  variant of: http://identifiers.org/hgnc/22943
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000160505
  ensembl protein: ENSP00000344787
  ensembl transcript: ENST00000346986
  gene symbol: NLRP4
  hgvsc: ENST00000346986.5:c.1856+1G>A
  variant of: http://identifiers.org/hgnc/22943
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000160505
  ensembl protein: ENSP00000468754
  ensembl transcript: ENST00000589437
  gene symbol: NLRP4
  hgvsc: ENST00000589437.1:c.553+1G>A
  variant of: http://identifiers.org/hgnc/22943
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000160505
  ensembl protein: ENSP00000301295
  ensembl transcript: ENST00000301295
  gene symbol: NLRP4
  hgvsc: ENST00000301295.6:c.1856+1G>A
  variant of: http://identifiers.org/hgnc/22943
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7752
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5587
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4956
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3070
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6790
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5570
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6979
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2326
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2384
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3805
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4997
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2938
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 505
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2997
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3227
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2708
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30587
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 560
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4407
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1767
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
hgvs: c.1856+1G>A
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: DP

19-56370622-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56370622
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 56370622
    reference: chr 19
allele count: 1
allele frequency: 8.715052638917939e-6
allele num: 114744
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160505
  ensembl protein: ENSP00000301295
  ensembl transcript: ENST00000301295
  gene symbol: NLRP4
  hgvsc: ENST00000301295.6:c.1856+7C>G
  variant of: http://identifiers.org/hgnc/22943
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160505
  ensembl protein: ENSP00000465463
  ensembl transcript: ENST00000587891
  gene symbol: NLRP4
  hgvsc: ENST00000587891.1:c.1631+7C>G
  variant of: http://identifiers.org/hgnc/22943
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160505
  ensembl protein: ENSP00000468754
  ensembl transcript: ENST00000589437
  gene symbol: NLRP4
  hgvsc: ENST00000589437.1:c.553+7C>G
  variant of: http://identifiers.org/hgnc/22943
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000160505
  ensembl protein: ENSP00000344787
  ensembl transcript: ENST00000346986
  gene symbol: NLRP4
  hgvsc: ENST00000346986.5:c.1856+7C>G
  variant of: http://identifiers.org/hgnc/22943
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7750
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6979
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4671
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6776
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3362
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2561
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4587
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2385
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5498
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5570
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3805
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2018
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2933
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 543
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 683
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2701
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4666
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2923
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1755
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7233
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 630
  bin: 2.75e1
  variant carriers: 0
hgvs: c.1856+7C>G
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff

19-56370627-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56370627
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 56370627
    reference: chr 19
allele count: 9
allele frequency: 7.89127575624726e-5
allele num: 114050
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160505
  ensembl protein: ENSP00000465463
  ensembl transcript: ENST00000587891
  gene symbol: NLRP4
  hgvsc: ENST00000587891.1:c.1631+12C>G
  variant of: http://identifiers.org/hgnc/22943
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160505
  ensembl protein: ENSP00000301295
  ensembl transcript: ENST00000301295
  gene symbol: NLRP4
  hgvsc: ENST00000301295.6:c.1856+12C>G
  variant of: http://identifiers.org/hgnc/22943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160505
  ensembl protein: ENSP00000344787
  ensembl transcript: ENST00000346986
  gene symbol: NLRP4
  hgvsc: ENST00000346986.5:c.1856+12C>G
  variant of: http://identifiers.org/hgnc/22943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160505
  ensembl protein: ENSP00000468754
  ensembl transcript: ENST00000589437
  gene symbol: NLRP4
  hgvsc: ENST00000589437.1:c.553+12C>G
  variant of: http://identifiers.org/hgnc/22943
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5456
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4531
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5571
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2772
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6980
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3419
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4429
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6764
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3804
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1561
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2383
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7748
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 6986
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4826
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2695
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 851
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2019
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2930
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 529
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 655
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3226
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD

http://identifiers.org/exac.variant/19-56370633-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56370633
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 56370633
    reference: chr 19
allele count: 4
allele frequency: 3.549371761198268e-5
allele num: 112696
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160505
  ensembl protein: ENSP00000344787
  ensembl transcript: ENST00000346986
  gene symbol: NLRP4
  hgvsc: ENST00000346986.5:c.1856+18C>A
  variant of: http://identifiers.org/hgnc/22943
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160505
  ensembl protein: ENSP00000301295
  ensembl transcript: ENST00000301295
  gene symbol: NLRP4
  hgvsc: ENST00000301295.6:c.1856+18C>A
  variant of: http://identifiers.org/hgnc/22943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160505
  ensembl protein: ENSP00000465463
  ensembl transcript: ENST00000587891
  gene symbol: NLRP4
  hgvsc: ENST00000587891.1:c.1631+18C>A
  variant of: http://identifiers.org/hgnc/22943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160505
  ensembl protein: ENSP00000468754
  ensembl transcript: ENST00000589437
  gene symbol: NLRP4
  hgvsc: ENST00000589437.1:c.553+18C>A
  variant of: http://identifiers.org/hgnc/22943
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4318
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5400
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1559
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3333
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4143
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2948
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2386
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7747
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6760
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3805
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5572
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6980
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2927
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 650
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6460
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4484
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 377
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30582
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2839
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2017
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1259
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2682
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1728
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 1
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

19-56370638-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56370638
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 56370638
    reference: chr 19
allele count: 1
allele frequency: 8.91170284818023e-6
allele num: 112212
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160505
  ensembl protein: ENSP00000465463
  ensembl transcript: ENST00000587891
  gene symbol: NLRP4
  hgvsc: ENST00000587891.1:c.1631+23T>C
  variant of: http://identifiers.org/hgnc/22943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160505
  ensembl protein: ENSP00000468754
  ensembl transcript: ENST00000589437
  gene symbol: NLRP4
  hgvsc: ENST00000589437.1:c.553+23T>C
  variant of: http://identifiers.org/hgnc/22943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160505
  ensembl protein: ENSP00000344787
  ensembl transcript: ENST00000346986
  gene symbol: NLRP4
  hgvsc: ENST00000346986.5:c.1856+23T>C
  variant of: http://identifiers.org/hgnc/22943
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160505
  ensembl protein: ENSP00000301295
  ensembl transcript: ENST00000301295
  gene symbol: NLRP4
  hgvsc: ENST00000301295.6:c.1856+23T>C
  variant of: http://identifiers.org/hgnc/22943
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3164
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5364
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3101
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4291
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1559
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3804
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6757
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6979
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4081
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7749
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2386
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5571
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2016
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2676
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 578
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30583
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4382
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6418
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3227
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 654
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1428
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1723
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum

19-56370641-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56370641
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 56370641
    reference: chr 19
allele count: 7
allele frequency: 6.256927312381565e-5
allele num: 111876
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160505
  ensembl protein: ENSP00000468754
  ensembl transcript: ENST00000589437
  gene symbol: NLRP4
  hgvsc: ENST00000589437.1:c.553+26C>G
  variant of: http://identifiers.org/hgnc/22943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160505
  ensembl protein: ENSP00000465463
  ensembl transcript: ENST00000587891
  gene symbol: NLRP4
  hgvsc: ENST00000587891.1:c.1631+26C>G
  variant of: http://identifiers.org/hgnc/22943
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160505
  ensembl protein: ENSP00000301295
  ensembl transcript: ENST00000301295
  gene symbol: NLRP4
  hgvsc: ENST00000301295.6:c.1856+26C>G
  variant of: http://identifiers.org/hgnc/22943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160505
  ensembl protein: ENSP00000344787
  ensembl transcript: ENST00000346986
  gene symbol: NLRP4
  hgvsc: ENST00000346986.5:c.1856+26C>G
  variant of: http://identifiers.org/hgnc/22943
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4037
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4249
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6978
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1398
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3804
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5345
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7748
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3175
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2386
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3082
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5570
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1559
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6755
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 647
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30586
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 573
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2675
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2793
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4310
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1516
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6346
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2924
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2014
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3227
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum

19-56370641-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56370641
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 56370641
    reference: chr 19
allele count: 1
allele frequency: 8.938467589116521e-6
allele num: 111876
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160505
  ensembl protein: ENSP00000301295
  ensembl transcript: ENST00000301295
  gene symbol: NLRP4
  hgvsc: ENST00000301295.6:c.1856+26C>T
  variant of: http://identifiers.org/hgnc/22943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160505
  ensembl protein: ENSP00000344787
  ensembl transcript: ENST00000346986
  gene symbol: NLRP4
  hgvsc: ENST00000346986.5:c.1856+26C>T
  variant of: http://identifiers.org/hgnc/22943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160505
  ensembl protein: ENSP00000468754
  ensembl transcript: ENST00000589437
  gene symbol: NLRP4
  hgvsc: ENST00000589437.1:c.553+26C>T
  variant of: http://identifiers.org/hgnc/22943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160505
  ensembl protein: ENSP00000465463
  ensembl transcript: ENST00000587891
  gene symbol: NLRP4
  hgvsc: ENST00000587891.1:c.1631+26C>T
  variant of: http://identifiers.org/hgnc/22943
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3082
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6978
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1398
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5345
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4037
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3175
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7748
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1559
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5570
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3804
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6755
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4249
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2386
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1516
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4310
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 647
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6346
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30586
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2924
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2793
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 573
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2675
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

19-56370641-CTCTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56370641
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 56370637
    reference: chr 19
allele count: 1
allele frequency: 8.938467589116521e-6
allele num: 111876
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160505
  ensembl protein: ENSP00000344787
  ensembl transcript: ENST00000346986
  gene symbol: NLRP4
  hgvsc: ENST00000346986.5:c.1856+27_1856+30delTCTT
  variant of: http://identifiers.org/hgnc/22943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160505
  ensembl protein: ENSP00000468754
  ensembl transcript: ENST00000589437
  gene symbol: NLRP4
  hgvsc: ENST00000589437.1:c.553+27_553+30delTCTT
  variant of: http://identifiers.org/hgnc/22943
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160505
  ensembl protein: ENSP00000301295
  ensembl transcript: ENST00000301295
  gene symbol: NLRP4
  hgvsc: ENST00000301295.6:c.1856+27_1856+30delTCTT
  variant of: http://identifiers.org/hgnc/22943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160505
  ensembl protein: ENSP00000465463
  ensembl transcript: ENST00000587891
  gene symbol: NLRP4
  hgvsc: ENST00000587891.1:c.1631+27_1631+30delTCTT
  variant of: http://identifiers.org/hgnc/22943
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4249
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5570
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6755
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2386
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3175
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4037
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1398
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7748
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5345
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3082
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1559
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6978
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3804
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 573
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4310
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1516
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2924
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 647
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3227
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2675
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2014
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2793
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Latino
reference allele: CTCTT
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ClippingRankSum

19-56370642-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56370642
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 56370642
    reference: chr 19
allele count: 3
allele frequency: 2.684323550465283e-5
allele num: 111760
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160505
  ensembl protein: ENSP00000465463
  ensembl transcript: ENST00000587891
  gene symbol: NLRP4
  hgvsc: ENST00000587891.1:c.1631+27T>C
  variant of: http://identifiers.org/hgnc/22943
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160505
  ensembl protein: ENSP00000301295
  ensembl transcript: ENST00000301295
  gene symbol: NLRP4
  hgvsc: ENST00000301295.6:c.1856+27T>C
  variant of: http://identifiers.org/hgnc/22943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160505
  ensembl protein: ENSP00000468754
  ensembl transcript: ENST00000589437
  gene symbol: NLRP4
  hgvsc: ENST00000589437.1:c.553+27T>C
  variant of: http://identifiers.org/hgnc/22943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160505
  ensembl protein: ENSP00000344787
  ensembl transcript: ENST00000346986
  gene symbol: NLRP4
  hgvsc: ENST00000346986.5:c.1856+27T>C
  variant of: http://identifiers.org/hgnc/22943
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3023
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3207
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1441
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6979
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7748
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2386
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6755
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4025
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5339
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5568
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3804
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4244
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1559
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 574
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3227
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6332
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4286
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2923
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2787
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 647
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1556
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2674
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30581
  bin: 9.75e1
  variant carriers: 3
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: South Asian
reference allele: T
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

19-56370643-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56370643
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 56370643
    reference: chr 19
allele count: 3
allele frequency: 2.688075696211605e-5
allele num: 111604
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160505
  ensembl protein: ENSP00000344787
  ensembl transcript: ENST00000346986
  gene symbol: NLRP4
  hgvsc: ENST00000346986.5:c.1856+28C>T
  variant of: http://identifiers.org/hgnc/22943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160505
  ensembl protein: ENSP00000468754
  ensembl transcript: ENST00000589437
  gene symbol: NLRP4
  hgvsc: ENST00000589437.1:c.553+28C>T
  variant of: http://identifiers.org/hgnc/22943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160505
  ensembl protein: ENSP00000465463
  ensembl transcript: ENST00000587891
  gene symbol: NLRP4
  hgvsc: ENST00000587891.1:c.1631+28C>T
  variant of: http://identifiers.org/hgnc/22943
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160505
  ensembl protein: ENSP00000301295
  ensembl transcript: ENST00000301295
  gene symbol: NLRP4
  hgvsc: ENST00000301295.6:c.1856+28C>T
  variant of: http://identifiers.org/hgnc/22943
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6752
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5334
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4010
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4226
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2996
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6982
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3226
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3804
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7749
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5568
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2386
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2786
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4237
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 634
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1723
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6315
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30580
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1608
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2922
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 567
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3226
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2670
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum

http://identifiers.org/exac.variant/19-56370651-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56370651
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 56370651
    reference: chr 19
allele count: 5
allele frequency: 4.531119730307754e-5
allele num: 110348
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160505
  ensembl protein: ENSP00000344787
  ensembl transcript: ENST00000346986
  gene symbol: NLRP4
  hgvsc: ENST00000346986.5:c.1856+36A>C
  variant of: http://identifiers.org/hgnc/22943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160505
  ensembl protein: ENSP00000465463
  ensembl transcript: ENST00000587891
  gene symbol: NLRP4
  hgvsc: ENST00000587891.1:c.1631+36A>C
  variant of: http://identifiers.org/hgnc/22943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160505
  ensembl protein: ENSP00000468754
  ensembl transcript: ENST00000589437
  gene symbol: NLRP4
  hgvsc: ENST00000589437.1:c.553+36A>C
  variant of: http://identifiers.org/hgnc/22943
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160505
  ensembl protein: ENSP00000301295
  ensembl transcript: ENST00000301295
  gene symbol: NLRP4
  hgvsc: ENST00000301295.6:c.1856+36A>C
  variant of: http://identifiers.org/hgnc/22943
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1557
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3805
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3550
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3826
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2477
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7745
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6742
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4117
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6979
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5276
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5566
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2386
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 606
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2918
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1939
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6026
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 580
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2013
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30576
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1708
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2734
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3567
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum

19-56370652-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 56370652
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 56370652
    reference: chr 19
allele count: 1
allele frequency: 9.097028910357877e-6
allele num: 109926
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160505
  ensembl protein: ENSP00000468754
  ensembl transcript: ENST00000589437
  gene symbol: NLRP4
  hgvsc: ENST00000589437.1:c.553+37A>G
  variant of: http://identifiers.org/hgnc/22943
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000160505
  ensembl protein: ENSP00000301295
  ensembl transcript: ENST00000301295
  gene symbol: NLRP4
  hgvsc: ENST00000301295.6:c.1856+37A>G
  variant of: http://identifiers.org/hgnc/22943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160505
  ensembl protein: ENSP00000344787
  ensembl transcript: ENST00000346986
  gene symbol: NLRP4
  hgvsc: ENST00000346986.5:c.1856+37A>G
  variant of: http://identifiers.org/hgnc/22943
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000160505
  ensembl protein: ENSP00000465463
  ensembl transcript: ENST00000587891
  gene symbol: NLRP4
  hgvsc: ENST00000587891.1:c.1631+37A>G
  variant of: http://identifiers.org/hgnc/22943
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 3675
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6742
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7743
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3784
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1827
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5564
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2386
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5265
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2304
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4085
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6979
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3805
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 721
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2730
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1709
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3174
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30575
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 710
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 595
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2653
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1970
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3223
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 585
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2016
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5892
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
reference allele: A

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8589
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7591
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 522
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3370
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.208891e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.1e-3

QD
type: SiteQuality
SIO_000300: 2.635e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -4.434e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

South Asian
type: Population
allele count: 2
allele frequency: 2.382370458606313e-4
allele num: 8395
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8319
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.08440105755542e-5
allele num: 39336
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 2.066115702479339e-3
allele num: 484
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.655e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.052453e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.18e-2

FS
type: SiteQuality
SIO_000300: 2.272e0

VQSLOD
type: SiteQuality
SIO_000300: 1.17e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.56e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.73e0

MQRankSum
type: SiteQuality
SIO_000300: -1.33e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.47e-1

Latino
type: Population
allele count: 4
allele frequency: 4.84320135609638e-4
allele num: 8259
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8340
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2965
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5911
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.564e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.71e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.25e-1

DP
type: SiteQuality
SIO_000300: 1.028546e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.545e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.78e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.9e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.375e0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7011
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 455
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38016
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2843
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.641e0

DP
type: SiteQuality
SIO_000300: 9.94464e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.66e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.08e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.67e-1

QD
type: SiteQuality
SIO_000300: 1.469e1

MQ
type: SiteQuality
SIO_000300: 5.951e1

MQRankSum
type: SiteQuality
SIO_000300: 1.47e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.8e-1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 455
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2843
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8183
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7011
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.641e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.66e0

MQ
type: SiteQuality
SIO_000300: 5.951e1

DP
type: SiteQuality
SIO_000300: 9.94464e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.08e-2

QD
type: SiteQuality
SIO_000300: 1.469e1

VQSLOD
type: SiteQuality
SIO_000300: 4.8e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.47e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.67e-1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4715
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7120
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2452
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 525
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.08e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.54e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.3e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.61e0

DP
type: SiteQuality
SIO_000300: 3.62802e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.774e0

VQSLOD
type: SiteQuality
SIO_000300: -9.752e-1

QD
type: SiteQuality
SIO_000300: 1.41e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.1e-2

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 338
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4721
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 144
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 523
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -5.888e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.38e0

MQ
type: SiteQuality
SIO_000300: 5.881e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.62e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.16e-1

QD
type: SiteQuality
SIO_000300: 1.544e1

FS
type: SiteQuality
SIO_000300: 2.641e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.13e-2

DP
type: SiteQuality
SIO_000300: 3.61317e5

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 340
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 7101
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 2441
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
allele num: 144
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.739e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

QD
type: SiteQuality
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FS
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 3.60538e5

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -7.140000000000001e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.61e-1

European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 7018
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African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
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InbreedingCoeff
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DP
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FS
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VQSLOD
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MQ
type: SiteQuality
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Other
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -9.389999999999999e-1

FS
type: SiteQuality
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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QD
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MQ
type: SiteQuality
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European (Finnish)
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allele frequency: 0.0e0
allele num: 20
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African
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allele frequency: 6.112469437652812e-4
allele num: 1636
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Other
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
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VQSLOD
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MQ
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BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -7.6e-1

QD
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SIO_000300: 3.155e1

South Asian
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allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 424
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European (Non-Finnish)
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allele frequency: 2.191671647738593e-3
allele num: 5019
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
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SIO_000300: 1.913e1

VQSLOD
type: SiteQuality
SIO_000300: 1.31e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.48e-1

DP
type: SiteQuality
SIO_000300: 1.91902e5

FS
type: SiteQuality
SIO_000300: 1.693e0

African
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allele frequency: 0.0e0
allele num: 231
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South Asian
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allele count: 1
allele frequency: 2.30361667818475e-4
allele num: 4341
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2274
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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InbreedingCoeff
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SIO_000300: -5.79e-2

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -6.44e-1

QD
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MQRankSum
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VQSLOD
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FS
type: SiteQuality
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MQ
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.53524e5

Latino
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allele frequency: 0.0e0
allele num: 68
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2176
num of homozygotes: 0

VQSLOD
type: SiteQuality
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QD
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FS
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InbreedingCoeff
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DP
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MQ
type: SiteQuality
SIO_000300: 6.047e1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

South Asian
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allele frequency: 2.449779519843214e-4
allele num: 4082
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 1981
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African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
allele num: 70
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.919e1

BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -7.25e-2

QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 4.05e-1

FS
type: SiteQuality
SIO_000300: 2.577e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.13e-1

DP
type: SiteQuality
SIO_000300: 1.36217e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.09e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.95e-1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 106
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 70
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3982
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1939
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 156
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.51e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.79e-1

FS
type: SiteQuality
SIO_000300: 5.711e0

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -5.05e-2

QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.31405e5

MQ
type: SiteQuality
SIO_000300: 5.938e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.611e0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1244
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 24
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South Asian
type: Population
allele count: 2
allele frequency: 9.140767824497258e-4
allele num: 2188
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 94
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BaseQRankSum
type: SiteQuality
SIO_000300: -3.026e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.74e-2

DP
type: SiteQuality
SIO_000300: 6.8065e4

QD
type: SiteQuality
SIO_000300: 1.89e1

MQRankSum
type: SiteQuality
SIO_000300: 8.21e-1

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.13e-1

European (Non-Finnish)
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allele frequency: 3.478018920422927e-5
allele num: 28752
num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
allele num: 5760
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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MQRankSum
type: SiteQuality
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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DP
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QD
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ReadPosRankSum
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SIO_000300: 1.39e0

FS
type: SiteQuality
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MQ
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SIO_000300: 6.0e1

Other
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allele frequency: 0.0e0
allele num: 390
num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 2.918004085205719e-4
allele num: 6854
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1931
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African
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allele frequency: 0.0e0
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DP
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MQRankSum
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FS
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MQ
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ClippingRankSum
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VQSLOD
type: SiteQuality
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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QD
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European (Non-Finnish)
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allele frequency: 3.342692873378794e-5
allele num: 29916
num of homozygotes: 0

South Asian
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1975
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Latino
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Other
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MQ
type: SiteQuality
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InbreedingCoeff
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QD
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FS
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DP
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.487741014044275e-4
allele num: 33608
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South Asian
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Latino
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European (Finnish)
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allele frequency: 0.0e0
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African
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QD
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MQ
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FS
type: SiteQuality
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BaseQRankSum
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.16e-1

MQRankSum
type: SiteQuality
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InbreedingCoeff
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DP
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VQSLOD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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allele frequency: 2.297332222956092e-4
allele num: 34823
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South Asian
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Other
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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Latino
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ClippingRankSum
type: SiteQuality
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MQ
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MQRankSum
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VQSLOD
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DP
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BaseQRankSum
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FS
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QD
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InbreedingCoeff
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Latino
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Other
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allele frequency: 0.0e0
allele num: 503
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.249219237976265e-4
allele num: 8005
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5783
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7257
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2999
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.15e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.67e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.93e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.53e-1

FS
type: SiteQuality
SIO_000300: 6.18e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.17e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-3

DP
type: SiteQuality
SIO_000300: 1.172089e6

MQ
type: SiteQuality
SIO_000300: 5.93e1

QD
type: SiteQuality
SIO_000300: 1.252e1

GenotypeQuality
all individuals: 105
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2094
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 852
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1982
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1263
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 528
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 463
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1750
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 834
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8095
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.55356094073185e-5
allele num: 39161
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5881
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 506
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.229407425620851e-4
allele num: 8134
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.357773251866938e-4
allele num: 7365
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3092
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.32e-1

FS
type: SiteQuality
SIO_000300: 1.865e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.036e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.06e-1

QD
type: SiteQuality
SIO_000300: 1.282e1

MQ
type: SiteQuality
SIO_000300: 5.895e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.6e-2

DP
type: SiteQuality
SIO_000300: 1.19946e6

VQSLOD
type: SiteQuality
SIO_000300: 1.19e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

GenotypeQuality
all individuals: 1768
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1168
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 474
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1753
bin: 9.75e1
variant carriers: 4

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 563
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 512
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3223
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8272
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.664170411050092e-4
allele num: 6009
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.669870511280203e-4
allele num: 7491
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 520
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.207729468599034e-4
allele num: 8280
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.482436759923541e-5
allele num: 40283
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.07e-1

MQ
type: SiteQuality
SIO_000300: 5.952e1

VQSLOD
type: SiteQuality
SIO_000300: 2.43e0

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.7e-3

DP
type: SiteQuality
SIO_000300: 1.237999e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.41e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.734e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.921e1

GenotypeQuality
all individuals: 295
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 734
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12567
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 476
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1831
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 730
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3347
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 846
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 573
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8334
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.461235540241201e-5
allele num: 40630
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7520
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 523
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6043
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3269
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8337
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.29e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.2e-1

FS
type: SiteQuality
SIO_000300: 1.892e0

MQ
type: SiteQuality
SIO_000300: 5.962e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.26e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.299999999999999e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.23e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.49e-1

DP
type: SiteQuality
SIO_000300: 1.244681e6

QD
type: SiteQuality
SIO_000300: 3.481e1

GenotypeQuality
all individuals: 209
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 967
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1456
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 488
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variant carriers: 0

GenotypeQuality
all individuals: 919
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 230
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variant carriers: 0

GenotypeQuality
all individuals: 470
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variant carriers: 0

GenotypeQuality
all individuals: 770
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1749
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 544
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42623
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8658
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7760
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3483
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8657
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.596678907871627e-4
allele num: 6263
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.75e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.68e-1

QD
type: SiteQuality
SIO_000300: 8.25e0

FS
type: SiteQuality
SIO_000300: 9.360000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.07e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.62e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 4.79e-1

DP
type: SiteQuality
SIO_000300: 1.305152e6

GenotypeQuality
all individuals: 159
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 874
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1308
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 731
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 483
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variant carriers: 0

GenotypeQuality
all individuals: 497
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variant carriers: 0

GenotypeQuality
all individuals: 37442
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 710
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7841
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 549
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 9.207467255944572e-5
allele num: 43443
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8804
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3585
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8773
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6342
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.51e-1

MQ
type: SiteQuality
SIO_000300: 5.943e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.02e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.355e0

DP
type: SiteQuality
SIO_000300: 1.335642e6

FS
type: SiteQuality
SIO_000300: 3.822e0

MQRankSum
type: SiteQuality
SIO_000300: 1.12e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.0e0

QD
type: SiteQuality
SIO_000300: 2.372e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.29e0

GenotypeQuality
all individuals: 61
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 714
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
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GenotypeQuality
all individuals: 582
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variant carriers: 0

GenotypeQuality
all individuals: 1017
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variant carriers: 0

GenotypeQuality
all individuals: 285
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variant carriers: 0

GenotypeQuality
all individuals: 216
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variant carriers: 0

GenotypeQuality
all individuals: 546
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variant carriers: 0

GenotypeQuality
all individuals: 316
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9016
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 561
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7976
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8927
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3764
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.24346031318706e-5
allele num: 44574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6445
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.95e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.05e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 7.03e-1

DP
type: SiteQuality
SIO_000300: 1.372826e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.45e0

FS
type: SiteQuality
SIO_000300: 1.475e0

QD
type: SiteQuality
SIO_000300: 1.048e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.146e0

GenotypeQuality
all individuals: 960
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1091
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 433
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variant carriers: 0

GenotypeQuality
all individuals: 4754
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variant carriers: 0

GenotypeQuality
all individuals: 526
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variant carriers: 0

GenotypeQuality
all individuals: 4363
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variant carriers: 0

GenotypeQuality
all individuals: 54
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variant carriers: 0

GenotypeQuality
all individuals: 1754
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 1
allele frequency: 1.530690341343946e-4
allele num: 6533
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 579
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9251
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.373018476003061e-5
allele num: 45735
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9049
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8095
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3945
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.417867e6

FS
type: SiteQuality
SIO_000300: 4.219e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.87e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.88e-1

QD
type: SiteQuality
SIO_000300: 1.663e1

VQSLOD
type: SiteQuality
SIO_000300: 1.07e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.52e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.24e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.07e-1

GenotypeQuality
all individuals: 52
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 316
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 519
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variant carriers: 0

GenotypeQuality
all individuals: 1148
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variant carriers: 0

GenotypeQuality
all individuals: 1755
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variant carriers: 1

GenotypeQuality
all individuals: 1044
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variant carriers: 0

GenotypeQuality
all individuals: 394
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variant carriers: 0

GenotypeQuality
all individuals: 44620
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.157636956005782e-5
allele num: 46347
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 589
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4061
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9414
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9119
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8162
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.91e-1

MQ
type: SiteQuality
SIO_000300: 5.816e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.443516e6

VQSLOD
type: SiteQuality
SIO_000300: -1.358e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.12e0

QD
type: SiteQuality
SIO_000300: 9.25e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 4.84e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.7e-1

GenotypeQuality
all individuals: 207
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variant carriers: 0

GenotypeQuality
all individuals: 4250
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variant carriers: 0

GenotypeQuality
all individuals: 103
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variant carriers: 0

GenotypeQuality
all individuals: 1022
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GenotypeQuality
all individuals: 1768
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variant carriers: 4

GenotypeQuality
all individuals: 965
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GenotypeQuality
all individuals: 1071
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GenotypeQuality
all individuals: 917
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GenotypeQuality
all individuals: 42106
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GenotypeQuality
all individuals: 210
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8137
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.413127413127413e-4
allele num: 4144
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46375
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 3.117854915817917e-4
allele num: 9622
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9108
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 591
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.419718e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.9e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -7.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.64e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.699e-1

QD
type: SiteQuality
SIO_000300: 2.554e1

MQRankSum
type: SiteQuality
SIO_000300: 6.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 4106
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41479
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1154
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GenotypeQuality
all individuals: 1025
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variant carriers: 0

GenotypeQuality
all individuals: 375
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variant carriers: 0

GenotypeQuality
all individuals: 896
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 1.10265740434447e-4
allele num: 9069
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6541
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.170657057891424e-5
allele num: 46069
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 589
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8095
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9553
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4117
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.3e-3

QD
type: SiteQuality
SIO_000300: 1.421e1

VQSLOD
type: SiteQuality
SIO_000300: 1.44e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.79e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 5.315e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.61e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.99e0

DP
type: SiteQuality
SIO_000300: 1.40996e6

GenotypeQuality
all individuals: 205
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 875
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 800
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 394
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 301
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40806
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variant carriers: 0

GenotypeQuality
all individuals: 4069
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1005
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 585
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9537
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.350474201687984e-5
allele num: 45972
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 3.314184710561202e-4
allele num: 9052
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4107
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.237317495669389e-4
allele num: 8082
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6540
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.816e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.64e-1

FS
type: SiteQuality
SIO_000300: 6.72e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.89e-2

VQSLOD
type: SiteQuality
SIO_000300: -6.919e-1

MQ
type: SiteQuality
SIO_000300: 5.966e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.56e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.6e-2

DP
type: SiteQuality
SIO_000300: 1.406316e6

BaseQRankSum
type: SiteQuality
SIO_000300: -8.3e-1

GenotypeQuality
all individuals: 537
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1020
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4110
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 300
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1755
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variant carriers: 1

GenotypeQuality
all individuals: 476
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8076
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.174905935318297e-5
allele num: 45979
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4116
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6539
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9054
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9535
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 584
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.9e-3

VQSLOD
type: SiteQuality
SIO_000300: 7.79e-1

QD
type: SiteQuality
SIO_000300: 1.436e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.909999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.7e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.51e-1

DP
type: SiteQuality
SIO_000300: 1.402354e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.45e0

GenotypeQuality
all individuals: 1773
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 728
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1748
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 612
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 699
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 448
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8897
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.257861635220126e-4
allele num: 7950
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9296
num of homozygotes: 0

East Asian
type: Population
allele count: 6
allele frequency: 9.295120061967467e-4
allele num: 6455
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44886
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3977
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 570
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.03e-2

DP
type: SiteQuality
SIO_000300: 1.346507e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.41e-1

FS
type: SiteQuality
SIO_000300: 3.481e0

QD
type: SiteQuality
SIO_000300: 1.435e1

MQ
type: SiteQuality
SIO_000300: 5.942e1

MQRankSum
type: SiteQuality
SIO_000300: 3.73e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.76e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.722e0

GenotypeQuality
all individuals: 9845
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 424
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 731
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1995
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35426
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variant carriers: 0

GenotypeQuality
all individuals: 436
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variant carriers: 0

GenotypeQuality
all individuals: 1098
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 285
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6422
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9247
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3941
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8847
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.733402163666562e-5
allele num: 44554
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.69e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.33e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.25e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

DP
type: SiteQuality
SIO_000300: 1.326871e6

MQRankSum
type: SiteQuality
SIO_000300: 7.11e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.37e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.2e0

QD
type: SiteQuality
SIO_000300: 1.108e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 851
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 657
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 719
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22773
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3860
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1743
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 16683
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7646
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8736
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.197318007662835e-4
allele num: 8352
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 539
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3772
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6082
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41693
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.712e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.38e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.8e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.32e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.137e0

VQSLOD
type: SiteQuality
SIO_000300: 7.34e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.572e1

DP
type: SiteQuality
SIO_000300: 1.164356e6

GenotypeQuality
all individuals: 884
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3905
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 740
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22379
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1744
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 684
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 710
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2693
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41540
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8330
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3769
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8723
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.299785513941594e-4
allele num: 6061
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 538
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.115e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.764e0

QD
type: SiteQuality
SIO_000300: 3.026e1

DP
type: SiteQuality
SIO_000300: 1.15946e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.39e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.2e-2

FS
type: SiteQuality
SIO_000300: 4.714e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.37e-1

GenotypeQuality
all individuals: 974
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 743
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20916
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 701
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 414
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1742
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 680
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2080
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 535
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8280
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3736
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7595
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6018
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8660
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.422128566584314e-5
allele num: 41286
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.308e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.91e0

DP
type: SiteQuality
SIO_000300: 1.1462e6

MQ
type: SiteQuality
SIO_000300: 5.936e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.333e0

MQRankSum
type: SiteQuality
SIO_000300: -7.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.0e0

VQSLOD
type: SiteQuality
SIO_000300: 6.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

QD
type: SiteQuality
SIO_000300: 1.58e1

GenotypeQuality
all individuals: 2529
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 838
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 291
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1452
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2283
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 704
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1743
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 954
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8210
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3695
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40765
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.684919966301601e-4
allele num: 5935
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 529
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.387e0

QD
type: SiteQuality
SIO_000300: 1.079e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.77e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.41e-1

DP
type: SiteQuality
SIO_000300: 1.131208e6

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.12e-1

GenotypeQuality
all individuals: 2256
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 289
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 418
bin: 8.25e1
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GenotypeQuality
all individuals: 4155
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 190
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variant carriers: 0

GenotypeQuality
all individuals: 676
bin: 7.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7543
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8565
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 530
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8184
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40612
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 9
allele frequency: 2.439024390243902e-3
allele num: 3690
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.345e0

QD
type: SiteQuality
SIO_000300: 2.902e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.641e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

DP
type: SiteQuality
SIO_000300: 1.130036e6

MQRankSum
type: SiteQuality
SIO_000300: 1.95e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.814e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.38e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.2e-3

GenotypeQuality
all individuals: 1748
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 290
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1210
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4386
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variant carriers: 0

GenotypeQuality
all individuals: 184
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GenotypeQuality
all individuals: 510
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 423
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 668
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8021
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7460
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5789
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 7.552299675251114e-5
allele num: 39723
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 525
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 3.557031064737965e-4
allele num: 8434
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.13e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.6e-2

FS
type: SiteQuality
SIO_000300: 6.52e-1

MQ
type: SiteQuality
SIO_000300: 5.925e1

VQSLOD
type: SiteQuality
SIO_000300: 6.820000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.99e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 4.05e0

QD
type: SiteQuality
SIO_000300: 1.59e1

DP
type: SiteQuality
SIO_000300: 1.091916e6

GenotypeQuality
all individuals: 1888
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4643
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 424
bin: 8.25e1
variant carriers: 1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 975
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2689
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2374
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 668
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8411
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5767
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 35
allele frequency: 8.847767834572021e-4
allele num: 39558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 526
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3614
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.691065662002153e-4
allele num: 7432
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7997
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.779e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.539e0

MQRankSum
type: SiteQuality
SIO_000300: 2.16e-1

DP
type: SiteQuality
SIO_000300: 1.087607e6

MQ
type: SiteQuality
SIO_000300: 5.96e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.64e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.74e0

FS
type: SiteQuality
SIO_000300: 1.112e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.38e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.7e-1

GenotypeQuality
all individuals: 1739
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 362
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 427
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 676
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variant carriers: 0

GenotypeQuality
all individuals: 4764
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variant carriers: 0

GenotypeQuality
all individuals: 947
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GenotypeQuality
all individuals: 16272
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7366
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7856
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 517
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.577186742951394e-5
allele num: 38802
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5630
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8304
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.2e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.602e0

MQ
type: SiteQuality
SIO_000300: 5.75e1

DP
type: SiteQuality
SIO_000300: 1.068462e6

QD
type: SiteQuality
SIO_000300: 3.137e1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 1078
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 962
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 432
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2404
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variant carriers: 0

GenotypeQuality
all individuals: 655
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8183
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.611852587039987e-5
allele num: 38287
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7344
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5532
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 509
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7737
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.855e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.868e0

QD
type: SiteQuality
SIO_000300: 1.526e1

MQRankSum
type: SiteQuality
SIO_000300: 9.78e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.278e-1

DP
type: SiteQuality
SIO_000300: 1.080934e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -9.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.92e0

GenotypeQuality
all individuals: 3674
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16384
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 740
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1739
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2116
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22538
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 515
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5630
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7492
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7931
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3675
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39360
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.208459214501511e-4
allele num: 8275
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.806e0

MQRankSum
type: SiteQuality
SIO_000300: 3.28e-1

DP
type: SiteQuality
SIO_000300: 1.134956e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.12e0

VQSLOD
type: SiteQuality
SIO_000300: -3.679e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.24e0

MQ
type: SiteQuality
SIO_000300: 5.9e1

QD
type: SiteQuality
SIO_000300: 8.710000000000001e0

FS
type: SiteQuality
SIO_000300: 8.169999999999999e-1

GenotypeQuality
all individuals: 23785
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3449
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variant carriers: 0

GenotypeQuality
all individuals: 432
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 702
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variant carriers: 0

GenotypeQuality
all individuals: 1740
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 520
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variant carriers: 0

GenotypeQuality
all individuals: 1955
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variant carriers: 0

GenotypeQuality
all individuals: 761
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5634
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7971
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7505
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 516
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.52691160863193e-5
allele num: 39574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8320
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3680
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 8.99e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.626e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.58e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.11e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.06e-1

DP
type: SiteQuality
SIO_000300: 1.153853e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.4e-3

QD
type: SiteQuality
SIO_000300: 3.242e1

GenotypeQuality
all individuals: 629
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1896
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variant carriers: 0

GenotypeQuality
all individuals: 432
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 901
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variant carriers: 0

GenotypeQuality
all individuals: 424
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 695
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 400
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1741
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 520
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5655
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.25250501002004e-4
allele num: 7984
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39763
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8315
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3707
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.163204e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.531e0

QD
type: SiteQuality
SIO_000300: 2.296e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.54e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.184e0

MQRankSum
type: SiteQuality
SIO_000300: 1.53e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 3.82e-1

GenotypeQuality
all individuals: 554
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 630
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 468
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15404
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1741
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2831
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5727
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7608
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3742
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8377
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 7.456194855225549e-5
allele num: 40235
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8068
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 525
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.735e1

VQSLOD
type: SiteQuality
SIO_000300: -6.498e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.79e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.51e-1

DP
type: SiteQuality
SIO_000300: 1.177899e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.51e-1

GenotypeQuality
all individuals: 189
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 642
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 341
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variant carriers: 0

GenotypeQuality
all individuals: 437
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variant carriers: 0

GenotypeQuality
all individuals: 536
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GenotypeQuality
all individuals: 2569
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variant carriers: 0

GenotypeQuality
all individuals: 29578
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 774
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3796
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8203
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.44164469186444e-5
allele num: 40956
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 536
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7698
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5854
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8472
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.64e-1

QD
type: SiteQuality
SIO_000300: 2.978e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

DP
type: SiteQuality
SIO_000300: 1.215345e6

GenotypeQuality
all individuals: 65
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 189
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variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11284
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.520635017183176e-5
allele num: 65762
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15778
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10230
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.769e0

DP
type: SiteQuality
SIO_000300: 2.570824e6

QD
type: SiteQuality
SIO_000300: 1.398e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.44e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.472e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

FS
type: SiteQuality
SIO_000300: 4.165e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.15e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e0

GenotypeQuality
all individuals: 50
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variant carriers: 0

GenotypeQuality
all individuals: 282
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GenotypeQuality
all individuals: 3346
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variant carriers: 0

GenotypeQuality
all individuals: 30587
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10202
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.51890482398957e-5
allele num: 15340
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65498
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.554484e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.26e0

MQ
type: SiteQuality
SIO_000300: 5.928e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.07e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.67e-1

QD
type: SiteQuality
SIO_000300: 1.367e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -3.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.66e0

GenotypeQuality
all individuals: 47
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variant carriers: 0

GenotypeQuality
all individuals: 153
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variant carriers: 0

GenotypeQuality
all individuals: 2756
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3338
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10186
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.057355998532469e-5
allele num: 65416
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15188
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.976e1

FS
type: SiteQuality
SIO_000300: 4.237e0

DP
type: SiteQuality
SIO_000300: 2.550349e6

QD
type: SiteQuality
SIO_000300: 1.176e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.08e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 9.4e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.49e-1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65284
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.731301939058172e-4
allele num: 11552
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10160
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14970
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.9e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -7.61e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.05e0

QD
type: SiteQuality
SIO_000300: 1.339e1

DP
type: SiteQuality
SIO_000300: 2.543176e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 4.181e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.26e0

GenotypeQuality
all individuals: 65
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1777
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14324
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64816
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.598752598752599e-4
allele num: 11544
num of homozygotes: 0

African
type: Population
allele count: 52
allele frequency: 5.170013919268244e-3
allele num: 10058
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.11e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.340000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.71e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.37e0

FS
type: SiteQuality
SIO_000300: 1.137e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.96e-1

MQ
type: SiteQuality
SIO_000300: 5.966e1

DP
type: SiteQuality
SIO_000300: 2.52241e6

QD
type: SiteQuality
SIO_000300: 1.263e1

GenotypeQuality
all individuals: 523
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1739
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8860
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3999
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7961
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.596424010217114e-4
allele num: 6264
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 574
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8742
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43934
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.976e1

VQSLOD
type: SiteQuality
SIO_000300: -2.527e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.399999999999999e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 5.74e-1

MQ
type: SiteQuality
SIO_000300: 5.939e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.11e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 7.03e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.531e0

DP
type: SiteQuality
SIO_000300: 1.347062e6

GenotypeQuality
all individuals: 42847
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
all individuals: 322
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GenotypeQuality
all individuals: 457
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6351
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8014
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4071
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 581
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9040
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.688664942477482e-5
allele num: 44852
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

FS
type: SiteQuality
SIO_000300: 1.334e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.6e-2

DP
type: SiteQuality
SIO_000300: 1.393306e6

VQSLOD
type: SiteQuality
SIO_000300: 1.91e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.55e-1

QD
type: SiteQuality
SIO_000300: 8.75e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.56e-1

GenotypeQuality
all individuals: 970
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 490
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 37982
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variant carriers: 0

GenotypeQuality
all individuals: 437
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 1.150880423523996e-4
allele num: 8689
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7848
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43260
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6171
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8823
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 562
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.36e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.8e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.599999999999999e-2

VQSLOD
type: SiteQuality
SIO_000300: -3.44e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.9e0

QD
type: SiteQuality
SIO_000300: 1.016e1

DP
type: SiteQuality
SIO_000300: 1.327368e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

GenotypeQuality
all individuals: 712
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1431
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 745
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 775
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variant carriers: 0

GenotypeQuality
all individuals: 1737
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variant carriers: 0

GenotypeQuality
all individuals: 245
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 31487
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variant carriers: 0

GenotypeQuality
all individuals: 746
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.783659020784999e-5
allele num: 41809
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7698
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3734
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6029
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8617
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8453
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 543
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.01e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.974e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.53e-1

FS
type: SiteQuality
SIO_000300: 3.112e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 6.35e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.79e-1

QD
type: SiteQuality
SIO_000300: 2.51e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.16e-1

DP
type: SiteQuality
SIO_000300: 1.254929e6

GenotypeQuality
all individuals: 2897
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 220
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variant carriers: 1

GenotypeQuality
all individuals: 246
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variant carriers: 0

GenotypeQuality
all individuals: 292
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variant carriers: 0

GenotypeQuality
all individuals: 189
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GenotypeQuality
all individuals: 1272
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1737
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GenotypeQuality
all individuals: 416
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 531
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7580
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3615
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8248
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5931
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8477
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.443195699975568e-5
allele num: 40930
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.19e0

DP
type: SiteQuality
SIO_000300: 1.206471e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.932e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14266
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.543352779578356e-5
allele num: 64794
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10046
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.518648e6

BaseQRankSum
type: SiteQuality
SIO_000300: -9.340000000000001e-1

FS
type: SiteQuality
SIO_000300: 5.9e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.22e-1

MQ
type: SiteQuality
SIO_000300: 5.917e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.8e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 10

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

South Asian
type: Population
allele count: 9
allele frequency: 6.488824801730354e-4
allele num: 13870
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5500031000062e-5
allele num: 64516
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9962
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.2e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 4.14e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.9e-2

MQ
type: SiteQuality
SIO_000300: 5.974e1

QD
type: SiteQuality
SIO_000300: 1.235e1

MQRankSum
type: SiteQuality
SIO_000300: 2.35e-1

DP
type: SiteQuality
SIO_000300: 2.506862e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9924
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South Asian
type: Population
allele count: 3
allele frequency: 2.168883747831116e-4
allele num: 13832
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.551927493947483e-5
allele num: 64436
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.88e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.82e-1

ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.919e1

QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -3.016e0

DP
type: SiteQuality
SIO_000300: 2.503731e6

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 48
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 1
allele frequency: 7.468259895444362e-5
allele num: 13390
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64022
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -6.37e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.678e0

BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.489083e6

MQ
type: SiteQuality
SIO_000300: 5.875e1

ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.321e0

QD
type: SiteQuality
SIO_000300: 9.5e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 30585
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 2900
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13134
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63738
num of homozygotes: 0

East Asian
type: Population
allele count: 9
allele frequency: 1.046998604001861e-3
allele num: 8596
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.622e0

QD
type: SiteQuality
SIO_000300: 1.281e1

MQRankSum
type: SiteQuality
SIO_000300: 1.45e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.84e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.999999999999999e-3

FS
type: SiteQuality
SIO_000300: 1.869e0

DP
type: SiteQuality
SIO_000300: 2.481622e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

MQ
type: SiteQuality
SIO_000300: 5.963e1

VQSLOD
type: SiteQuality
SIO_000300: 2.75e0

GenotypeQuality
all individuals: 62
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3227
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9414
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 3.194377894904967e-4
allele num: 12522
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8572
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63244
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -6.11e-1

DP
type: SiteQuality
SIO_000300: 2.469013e6

VQSLOD
type: SiteQuality
SIO_000300: 7.7e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 5.492e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.53e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.1e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.59e0

QD
type: SiteQuality
SIO_000300: 1.298e1

GenotypeQuality
all individuals: 2926
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2808
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8570
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.090614886731392e-5
allele num: 12360
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9312
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63038
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

QD
type: SiteQuality
SIO_000300: 1.423e1

DP
type: SiteQuality
SIO_000300: 2.464496e6

FS
type: SiteQuality
SIO_000300: 5.907e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.22e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.49e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.86e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.36e-1

GenotypeQuality
all individuals: 318
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1725
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 6
allele frequency: 7.004436142890498e-4
allele num: 8566
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.588310038119441e-5
allele num: 62960
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9288
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12140
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.8e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.89e0

DP
type: SiteQuality
SIO_000300: 2.461924e6

QD
type: SiteQuality
SIO_000300: 1.315e1

MQ
type: SiteQuality
SIO_000300: 5.971e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.04e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.7e-1

FS
type: SiteQuality
SIO_000300: 5.382e0

MQRankSum
type: SiteQuality
SIO_000300: 4.05e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.027e0

GenotypeQuality
all individuals: 3227
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2014
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1725
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9288
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.237232289950576e-5
allele num: 12140
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62960
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.05e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.8e-1

MQ
type: SiteQuality
SIO_000300: 5.971e1

DP
type: SiteQuality
SIO_000300: 2.461924e6

VQSLOD
type: SiteQuality
SIO_000300: 1.89e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.7e-1

FS
type: SiteQuality
SIO_000300: 5.382e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.04e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.027e0

QD
type: SiteQuality
SIO_000300: 1.315e1

GenotypeQuality
all individuals: 1725
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6346
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30586
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62960
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.237232289950576e-5
allele num: 12140
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9288
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.7e-1

DP
type: SiteQuality
SIO_000300: 2.461924e6

MQRankSum
type: SiteQuality
SIO_000300: 4.05e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.027e0

VQSLOD
type: SiteQuality
SIO_000300: 1.89e0

FS
type: SiteQuality
SIO_000300: 5.382e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.04e-2

MQ
type: SiteQuality
SIO_000300: 5.971e1

QD
type: SiteQuality
SIO_000300: 1.315e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.8e-1

GenotypeQuality
all individuals: 1723
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2014
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.767656220202148e-5
allele num: 62924
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9276
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12068
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.427e1

FS
type: SiteQuality
SIO_000300: 6.830000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.87e-1

MQ
type: SiteQuality
SIO_000300: 5.961e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.05e0

VQSLOD
type: SiteQuality
SIO_000300: 9.73e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.7e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.0e-1

DP
type: SiteQuality
SIO_000300: 2.460834e6

GenotypeQuality
all individuals: 284
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2014
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.219512195121951e-3
allele num: 820
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11956
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.740341106856944e-4
allele num: 11492
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62882
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9278
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.414e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.25e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.29e-1

FS
type: SiteQuality
SIO_000300: 6.5e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

MQ
type: SiteQuality
SIO_000300: 5.96e1

VQSLOD
type: SiteQuality
SIO_000300: 1.93e0

DP
type: SiteQuality
SIO_000300: 2.459861e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.536e0

GenotypeQuality
all individuals: 148
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3224
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2654
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11362
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9098
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.68055230517201e-4
allele num: 8546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62432
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11484
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.228501228501228e-3
allele num: 814
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.54e0

MQ
type: SiteQuality
SIO_000300: 5.957e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

FS
type: SiteQuality
SIO_000300: 1.894e0

VQSLOD
type: SiteQuality
SIO_000300: 7.42e-1

QD
type: SiteQuality
SIO_000300: 1.199e1

DP
type: SiteQuality
SIO_000300: 2.449466e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.18e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.8e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.01e-1

GenotypeQuality
all individuals: 63
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2920
bin: 8.25e1
variant carriers: 0