17-17772686-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17772686
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17772686
    reference: chr 17
allele count: 3
allele frequency: 2.481020195504391e-5
allele num: 120918
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.585T>C
  hgvsp: ENST00000540946.1:c.585T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000463313
  ensembl transcript: ENST00000478943
  gene symbol: TOM1L2
  hgvsc: ENST00000478943.1:c.78T>C
  hgvsp: ENST00000478943.1:c.78T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000577517
  gene symbol: TOM1L2
  hgvsc: ENST00000577517.1:n.196T>C
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.813T>C
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.744T>C
  hgvsp: ENST00000318094.10:c.744T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.744T>C
  hgvsp: ENST00000395739.4:c.744T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.879T>C
  hgvsp: ENST00000379504.3:c.879T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.720T>C
  hgvsp: ENST00000535933.1:c.720T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.729T>C
  hgvsp: ENST00000581396.1:c.729T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.435T>C
  hgvsp: ENST00000542206.1:c.435T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30162
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1158
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2950
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10584
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13735
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1358
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Asp293Asp
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

17-17772689-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17772689
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17772689
    reference: chr 17
allele count: 4
allele frequency: 3.307097030226867e-5
allele num: 120952
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.717C>T
  hgvsp: ENST00000535933.1:c.717C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.726C>T
  hgvsp: ENST00000581396.1:c.726C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.432C>T
  hgvsp: ENST00000542206.1:c.432C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000577517
  gene symbol: TOM1L2
  hgvsc: ENST00000577517.1:n.193C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.810C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000463313
  ensembl transcript: ENST00000478943
  gene symbol: TOM1L2
  hgvsc: ENST00000478943.1:c.75C>T
  hgvsp: ENST00000478943.1:c.75C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.741C>T
  hgvsp: ENST00000318094.10:c.741C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.741C>T
  hgvsp: ENST00000395739.4:c.741C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.876C>T
  hgvsp: ENST00000379504.3:c.876C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.582C>T
  hgvsp: ENST00000540946.1:c.582C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10592
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2953
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30182
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13729
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41162
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Asn292Asn
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: East Asian
population: European (Finnish)
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

17-17772692-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17772692
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17772692
    reference: chr 17
allele count: 1
allele frequency: 8.266102367411717e-6
allele num: 120976
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.807G>C
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.429G>C
  hgvsp: ENST00000542206.1:c.429G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.714G>C
  hgvsp: ENST00000535933.1:c.714G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.873G>C
  hgvsp: ENST00000379504.3:c.873G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000463313
  ensembl transcript: ENST00000478943
  gene symbol: TOM1L2
  hgvsc: ENST00000478943.1:c.72G>C
  hgvsp: ENST00000478943.1:c.72G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.579G>C
  hgvsp: ENST00000540946.1:c.579G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.738G>C
  hgvsp: ENST00000395739.4:c.738G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.723G>C
  hgvsp: ENST00000581396.1:c.723G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.738G>C
  hgvsp: ENST00000318094.10:c.738G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000577517
  gene symbol: TOM1L2
  hgvsc: ENST00000577517.1:n.190G>C
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2952
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30190
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10593
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13727
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1355
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Val291Val
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

17-17772692-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17772692
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17772692
    reference: chr 17
allele count: 5
allele frequency: 4.133051183705859e-5
allele num: 120976
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.429G>A
  hgvsp: ENST00000542206.1:c.429G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.714G>A
  hgvsp: ENST00000535933.1:c.714G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000577517
  gene symbol: TOM1L2
  hgvsc: ENST00000577517.1:n.190G>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000463313
  ensembl transcript: ENST00000478943
  gene symbol: TOM1L2
  hgvsc: ENST00000478943.1:c.72G>A
  hgvsp: ENST00000478943.1:c.72G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.873G>A
  hgvsp: ENST00000379504.3:c.873G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.738G>A
  hgvsp: ENST00000395739.4:c.738G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.738G>A
  hgvsp: ENST00000318094.10:c.738G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.723G>A
  hgvsp: ENST00000581396.1:c.723G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.807G>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.579G>A
  hgvsp: ENST00000540946.1:c.579G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13727
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10593
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2952
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30190
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1785
  bin: 9.75e1
  variant carriers: 5
hgvs: p.Val291Val
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: C
site quality: MQ
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

17-17772696-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17772696
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17772696
    reference: chr 17
allele count: 1
allele frequency: 8.264599414866361e-6
allele num: 120998
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000577517
  gene symbol: TOM1L2
  hgvsc: ENST00000577517.1:n.186A>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.734A>G
  hgvsp: ENSP00000312860.10:p.His245Arg
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.575A>G
  hgvsp: ENSP00000437655.1:p.His192Arg
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.425A>G
  hgvsp: ENSP00000445188.1:p.His142Arg
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.710A>G
  hgvsp: ENSP00000438621.1:p.His237Arg
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.719A>G
  hgvsp: ENSP00000464297.1:p.His240Arg
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.803A>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.869A>G
  hgvsp: ENSP00000368818.3:p.His290Arg
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.734A>G
  hgvsp: ENSP00000379088.4:p.His245Arg
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000463313
  ensembl transcript: ENST00000478943
  gene symbol: TOM1L2
  hgvsc: ENST00000478943.1:c.68A>G
  hgvsp: ENSP00000463313.1:p.His23Arg
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30209
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10597
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2951
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13732
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1356
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
hgvs: p.His290Arg
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

17-17772704-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17772704
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17772704
    reference: chr 17
allele count: 1
allele frequency: 8.261868173631421e-6
allele num: 121038
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.861G>C
  hgvsp: ENSP00000368818.3:p.Glu287Asp
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.711G>C
  hgvsp: ENSP00000464297.1:p.Glu237Asp
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.702G>C
  hgvsp: ENSP00000438621.1:p.Glu234Asp
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.795G>C
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.726G>C
  hgvsp: ENSP00000312860.10:p.Glu242Asp
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000463313
  ensembl transcript: ENST00000478943
  gene symbol: TOM1L2
  hgvsc: ENST00000478943.1:c.60G>C
  hgvsp: ENSP00000463313.1:p.Glu20Asp
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.726G>C
  hgvsp: ENSP00000379088.4:p.Glu242Asp
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000577517
  gene symbol: TOM1L2
  hgvsc: ENST00000577517.1:n.178G>C
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.417G>C
  hgvsp: ENSP00000445188.1:p.Glu139Asp
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.567G>C
  hgvsp: ENSP00000437655.1:p.Glu189Asp
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2954
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10601
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30227
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13732
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1353
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2459
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Glu287Asp
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: QD

17-17772709-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17772709
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17772709
    reference: chr 17
allele count: 5
allele frequency: 4.130592822681911e-5
allele num: 121048
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.721G>A
  hgvsp: ENSP00000379088.4:p.Glu241Lys
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.412G>A
  hgvsp: ENSP00000445188.1:p.Glu138Lys
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.856G>A
  hgvsp: ENSP00000368818.3:p.Glu286Lys
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.721G>A
  hgvsp: ENSP00000312860.10:p.Glu241Lys
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.706G>A
  hgvsp: ENSP00000464297.1:p.Glu236Lys
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.697G>A
  hgvsp: ENSP00000438621.1:p.Glu233Lys
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000463313
  ensembl transcript: ENST00000478943
  gene symbol: TOM1L2
  hgvsc: ENST00000478943.1:c.55G>A
  hgvsp: ENSP00000463313.1:p.Glu19Lys
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.790G>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000577517
  gene symbol: TOM1L2
  hgvsc: ENST00000577517.1:n.173G>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.562G>A
  hgvsp: ENSP00000437655.1:p.Glu188Lys
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2953
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10602
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13735
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30224
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1352
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9769
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Glu286Lys
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

17-17772710-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17772710
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17772710
    reference: chr 17
allele count: 13
allele frequency: 1.073900903728914e-4
allele num: 121054
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.705C>T
  hgvsp: ENST00000581396.1:c.705C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.855C>T
  hgvsp: ENST00000379504.3:c.855C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.411C>T
  hgvsp: ENST00000542206.1:c.411C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.561C>T
  hgvsp: ENST00000540946.1:c.561C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.720C>T
  hgvsp: ENST00000395739.4:c.720C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.720C>T
  hgvsp: ENST00000318094.10:c.720C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.696C>T
  hgvsp: ENST00000535933.1:c.696C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.789C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000577517
  gene symbol: TOM1L2
  hgvsc: ENST00000577517.1:n.172C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000463313
  ensembl transcript: ENST00000478943
  gene symbol: TOM1L2
  hgvsc: ENST00000478943.1:c.54C>T
  hgvsp: ENST00000478943.1:c.54C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10597
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2948
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 30238
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 13731
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1350
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2450
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Thr285Thr
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: DP

17-17772712-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17772712
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17772712
    reference: chr 17
allele count: 1
allele frequency: 8.259275166011431e-6
allele num: 121076
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.703A>G
  hgvsp: ENSP00000464297.1:p.Thr235Ala
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000463313
  ensembl transcript: ENST00000478943
  gene symbol: TOM1L2
  hgvsc: ENST00000478943.1:c.52A>G
  hgvsp: ENSP00000463313.1:p.Thr18Ala
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.718A>G
  hgvsp: ENSP00000379088.4:p.Thr240Ala
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.853A>G
  hgvsp: ENSP00000368818.3:p.Thr285Ala
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.718A>G
  hgvsp: ENSP00000312860.10:p.Thr240Ala
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.559A>G
  hgvsp: ENSP00000437655.1:p.Thr187Ala
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.694A>G
  hgvsp: ENSP00000438621.1:p.Thr232Ala
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.409A>G
  hgvsp: ENSP00000445188.1:p.Thr137Ala
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000577517
  gene symbol: TOM1L2
  hgvsc: ENST00000577517.1:n.170A>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.787A>G
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30254
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2948
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13734
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10592
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Thr285Ala
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
reference allele: T
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: DP

17-17772716-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17772716
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17772716
    reference: chr 17
allele count: 310
allele frequency: 2.56012156448203e-3
allele num: 121088
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000463313
  ensembl transcript: ENST00000478943
  gene symbol: TOM1L2
  hgvsc: ENST00000478943.1:c.48G>A
  hgvsp: ENST00000478943.1:c.48G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.405G>A
  hgvsp: ENST00000542206.1:c.405G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.714G>A
  hgvsp: ENST00000395739.4:c.714G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.714G>A
  hgvsp: ENST00000318094.10:c.714G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.849G>A
  hgvsp: ENST00000379504.3:c.849G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000577517
  gene symbol: TOM1L2
  hgvsc: ENST00000577517.1:n.166G>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.699G>A
  hgvsp: ENST00000581396.1:c.699G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.555G>A
  hgvsp: ENST00000540946.1:c.555G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.690G>A
  hgvsp: ENST00000535933.1:c.690G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.783G>A
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.75e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 4.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2906
  bin: 3.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 10540
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 5.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 4.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 30208
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 5.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 13698
  bin: 3.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Glu283Glu
num of homozygotes: 6
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff

17-17772722-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17772722
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17772722
    reference: chr 17
allele count: 1
allele frequency: 8.259002312520648e-6
allele num: 121080
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.708T>C
  hgvsp: ENST00000395739.4:c.708T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.708T>C
  hgvsp: ENST00000318094.10:c.708T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.777T>C
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.843T>C
  hgvsp: ENST00000379504.3:c.843T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.693T>C
  hgvsp: ENST00000581396.1:c.693T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.399T>C
  hgvsp: ENST00000542206.1:c.399T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.549T>C
  hgvsp: ENST00000540946.1:c.549T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.684T>C
  hgvsp: ENST00000535933.1:c.684T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000577517
  gene symbol: TOM1L2
  hgvsc: ENST00000577517.1:n.160T>C
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000463313
  ensembl transcript: ENST00000478943
  gene symbol: TOM1L2
  hgvsc: ENST00000478943.1:c.42T>C
  hgvsp: ENST00000478943.1:c.42T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13744
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10557
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2919
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30328
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asn281Asn
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: A
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum

17-17772723-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17772723
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17772723
    reference: chr 17
allele count: 7
allele frequency: 5.781301618764453e-5
allele num: 121080
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.707A>G
  hgvsp: ENSP00000379088.4:p.Asn236Ser
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.707A>G
  hgvsp: ENSP00000312860.10:p.Asn236Ser
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.398A>G
  hgvsp: ENSP00000445188.1:p.Asn133Ser
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.548A>G
  hgvsp: ENSP00000437655.1:p.Asn183Ser
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.842A>G
  hgvsp: ENSP00000368818.3:p.Asn281Ser
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000577517
  gene symbol: TOM1L2
  hgvsc: ENST00000577517.1:n.159A>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000463313
  ensembl transcript: ENST00000478943
  gene symbol: TOM1L2
  hgvsc: ENST00000478943.1:c.41A>G
  hgvsp: ENSP00000463313.1:p.Asn14Ser
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.683A>G
  hgvsp: ENSP00000438621.1:p.Asn228Ser
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.776A>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.692A>G
  hgvsp: ENSP00000464297.1:p.Asn231Ser
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13742
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2919
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10547
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30328
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Asn281Ser
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum

17-17772730-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17772730
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17772730
    reference: chr 17
allele count: 1
allele frequency: 8.259548037531387e-6
allele num: 121072
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.685G>A
  hgvsp: ENSP00000464297.1:p.Val229Met
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000463313
  ensembl transcript: ENST00000478943
  gene symbol: TOM1L2
  hgvsc: ENST00000478943.1:c.34G>A
  hgvsp: ENSP00000463313.1:p.Val12Met
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.769G>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.835G>A
  hgvsp: ENSP00000368818.3:p.Val279Met
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000577517
  gene symbol: TOM1L2
  hgvsc: ENST00000577517.1:n.152G>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.391G>A
  hgvsp: ENSP00000445188.1:p.Val131Met
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.676G>A
  hgvsp: ENSP00000438621.1:p.Val226Met
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.541G>A
  hgvsp: ENSP00000437655.1:p.Val181Met
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.700G>A
  hgvsp: ENSP00000379088.4:p.Val234Met
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.700G>A
  hgvsp: ENSP00000312860.10:p.Val234Met
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30257
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13731
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2923
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10565
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Val279Met
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD

17-17772733-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17772733
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17772733
    reference: chr 17
allele count: 7
allele frequency: 5.782161206654441e-5
allele num: 121062
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.538C>T
  hgvsp: ENSP00000437655.1:p.Arg180Cys
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.766C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000463313
  ensembl transcript: ENST00000478943
  gene symbol: TOM1L2
  hgvsc: ENST00000478943.1:c.31C>T
  hgvsp: ENSP00000463313.1:p.Arg11Cys
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.388C>T
  hgvsp: ENSP00000445188.1:p.Arg130Cys
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.682C>T
  hgvsp: ENSP00000464297.1:p.Arg228Cys
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.673C>T
  hgvsp: ENSP00000438621.1:p.Arg225Cys
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.697C>T
  hgvsp: ENSP00000379088.4:p.Arg233Cys
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.697C>T
  hgvsp: ENSP00000312860.10:p.Arg233Cys
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.832C>T
  hgvsp: ENSP00000368818.3:p.Arg278Cys
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000577517
  gene symbol: TOM1L2
  hgvsc: ENST00000577517.1:n.149C>T
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30253
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10570
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2928
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13712
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2408
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg278Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: African
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

17-17772737-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17772737
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17772737
    reference: chr 17
allele count: 1
allele frequency: 8.259275166011431e-6
allele num: 121076
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.693C>G
  hgvsp: ENSP00000379088.4:p.Ile231Met
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.669C>G
  hgvsp: ENSP00000438621.1:p.Ile223Met
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000463313
  ensembl transcript: ENST00000478943
  gene symbol: TOM1L2
  hgvsc: ENST00000478943.1:c.27C>G
  hgvsp: ENSP00000463313.1:p.Ile9Met
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.384C>G
  hgvsp: ENSP00000445188.1:p.Ile128Met
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.534C>G
  hgvsp: ENSP00000437655.1:p.Ile178Met
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.828C>G
  hgvsp: ENSP00000368818.3:p.Ile276Met
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.678C>G
  hgvsp: ENSP00000464297.1:p.Ile226Met
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000577517
  gene symbol: TOM1L2
  hgvsc: ENST00000577517.1:n.145C>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.762C>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.693C>G
  hgvsp: ENSP00000312860.10:p.Ile231Met
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10604
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13673
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2904
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30262
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ile276Met
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP

17-17772740-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17772740
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17772740
    reference: chr 17
allele count: 9
allele frequency: 7.434944237918216e-5
allele num: 121050
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.690C>G
  hgvsp: ENST00000395739.4:c.690C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.666C>G
  hgvsp: ENST00000535933.1:c.666C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000463313
  ensembl transcript: ENST00000478943
  gene symbol: TOM1L2
  hgvsc: ENST00000478943.1:c.24C>G
  hgvsp: ENST00000478943.1:c.24C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.690C>G
  hgvsp: ENST00000318094.10:c.690C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.825C>G
  hgvsp: ENST00000379504.3:c.825C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.675C>G
  hgvsp: ENST00000581396.1:c.675C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000577517
  gene symbol: TOM1L2
  hgvsc: ENST00000577517.1:n.142C>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.531C>G
  hgvsp: ENST00000540946.1:c.531C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.381C>G
  hgvsp: ENST00000542206.1:c.381C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.759C>G
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10566
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13658
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2902
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30233
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Leu275Leu
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: DP

17-17772748-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17772748
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17772748
    reference: chr 17
allele count: 4
allele frequency: 3.305457310018841e-5
allele num: 121012
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.682G>A
  hgvsp: ENSP00000379088.4:p.Val228Met
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.817G>A
  hgvsp: ENSP00000368818.3:p.Val273Met
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.523G>A
  hgvsp: ENSP00000437655.1:p.Val175Met
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.373G>A
  hgvsp: ENSP00000445188.1:p.Val125Met
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000463313
  ensembl transcript: ENST00000478943
  gene symbol: TOM1L2
  hgvsc: ENST00000478943.1:c.16G>A
  hgvsp: ENSP00000463313.1:p.Val6Met
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.658G>A
  hgvsp: ENSP00000438621.1:p.Val220Met
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.667G>A
  hgvsp: ENSP00000464297.1:p.Val223Met
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.682G>A
  hgvsp: ENSP00000312860.10:p.Val228Met
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.751G>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000577517
  gene symbol: TOM1L2
  hgvsc: ENST00000577517.1:n.134G>A
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13617
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1111
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10663
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2895
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30130
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1314
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Val273Met
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: VQSLOD

17-17772757-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17772757
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17772757
    reference: chr 17
allele count: 1
allele frequency: 8.266239026567692e-6
allele num: 120974
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.514C>G
  hgvsp: ENSP00000437655.1:p.Gln172Glu
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000577517
  gene symbol: TOM1L2
  hgvsc: ENST00000577517.1:n.125C>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.673C>G
  hgvsp: ENSP00000379088.4:p.Gln225Glu
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.649C>G
  hgvsp: ENSP00000438621.1:p.Gln217Glu
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.658C>G
  hgvsp: ENSP00000464297.1:p.Gln220Glu
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000463313
  ensembl transcript: ENST00000478943
  gene symbol: TOM1L2
  hgvsc: ENST00000478943.1:c.7C>G
  hgvsp: ENSP00000463313.1:p.Gln3Glu
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.808C>G
  hgvsp: ENSP00000368818.3:p.Gln270Glu
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.364C>G
  hgvsp: ENSP00000445188.1:p.Gln122Glu
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.673C>G
  hgvsp: ENSP00000312860.10:p.Gln225Glu
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.742C>G
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2870
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10831
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13512
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30086
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 576
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gln270Glu
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum

17-17772764-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17772764
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17772764
    reference: chr 17
allele count: 1
allele frequency: 8.270614506657845e-6
allele num: 120910
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.801C>T
  hgvsp: ENST00000379504.3:c.801C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000463313
  ensembl transcript: ENST00000478943
  gene symbol: TOM1L2
  hgvsc: ENST00000478943.1:c.-1C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.642C>T
  hgvsp: ENST00000535933.1:c.642C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.735C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.666C>T
  hgvsp: ENST00000318094.10:c.666C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.357C>T
  hgvsp: ENST00000542206.1:c.357C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.666C>T
  hgvsp: ENST00000395739.4:c.666C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.507C>T
  hgvsp: ENST00000540946.1:c.507C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.651C>T
  hgvsp: ENST00000581396.1:c.651C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000577517
  gene symbol: TOM1L2
  hgvsc: ENST00000577517.1:n.118C>T
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10897
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13413
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30067
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2862
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1300
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ala267Ala
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum

17-17772765-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17772765
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17772765
    reference: chr 17
allele count: 1
allele frequency: 8.271161767381846e-6
allele num: 120902
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000463313
  ensembl transcript: ENST00000478943
  gene symbol: TOM1L2
  hgvsc: ENST00000478943.1:c.-2C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.506C>T
  hgvsp: ENSP00000437655.1:p.Ala169Val
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.734C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.800C>T
  hgvsp: ENSP00000368818.3:p.Ala267Val
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.665C>T
  hgvsp: ENSP00000379088.4:p.Ala222Val
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.356C>T
  hgvsp: ENSP00000445188.1:p.Ala119Val
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.641C>T
  hgvsp: ENSP00000438621.1:p.Ala214Val
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.650C>T
  hgvsp: ENSP00000464297.1:p.Ala217Val
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.665C>T
  hgvsp: ENSP00000312860.10:p.Ala222Val
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000577517
  gene symbol: TOM1L2
  hgvsc: ENST00000577517.1:n.117C>T
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13408
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2862
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10902
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30067
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2334
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ala267Val
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum

17-17772768-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17772768
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17772768
    reference: chr 17
allele count: 1
allele frequency: 8.273214640280627e-6
allele num: 120872
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000577517
  gene symbol: TOM1L2
  hgvsc: ENST00000577517.1:n.114G>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.503G>A
  hgvsp: ENSP00000437655.1:p.Arg168Gln
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.638G>A
  hgvsp: ENSP00000438621.1:p.Arg213Gln
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.662G>A
  hgvsp: ENSP00000312860.10:p.Arg221Gln
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.797G>A
  hgvsp: ENSP00000368818.3:p.Arg266Gln
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.647G>A
  hgvsp: ENSP00000464297.1:p.Arg216Gln
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.353G>A
  hgvsp: ENSP00000445188.1:p.Arg118Gln
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.662G>A
  hgvsp: ENSP00000379088.4:p.Arg221Gln
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.731G>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000463313
  ensembl transcript: ENST00000478943
  gene symbol: TOM1L2
  hgvsc: ENST00000478943.1:c.-5G>A
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2856
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10951
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30054
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13373
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Arg266Gln
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ

17-17772769-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17772769
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17772769
    reference: chr 17
allele count: 3
allele frequency: 2.482251898922703e-5
allele num: 120858
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.796C>T
  hgvsp: ENSP00000368818.3:p.Arg266Trp
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.730C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.502C>T
  hgvsp: ENSP00000437655.1:p.Arg168Trp
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.661C>T
  hgvsp: ENSP00000312860.10:p.Arg221Trp
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.661C>T
  hgvsp: ENSP00000379088.4:p.Arg221Trp
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.637C>T
  hgvsp: ENSP00000438621.1:p.Arg213Trp
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.352C>T
  hgvsp: ENSP00000445188.1:p.Arg118Trp
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.646C>T
  hgvsp: ENSP00000464297.1:p.Arg216Trp
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000577517
  gene symbol: TOM1L2
  hgvsc: ENST00000577517.1:n.113C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000463313
  ensembl transcript: ENST00000478943
  gene symbol: TOM1L2
  hgvsc: ENST00000478943.1:c.-6C>T
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2851
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13352
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 30038
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10958
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41358
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg266Trp
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

17-17772777-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17772777
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17772777
    reference: chr 17
allele count: 1
allele frequency: 8.280064915708939e-6
allele num: 120772
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000463313
  ensembl transcript: ENST00000478943
  gene symbol: TOM1L2
  hgvsc: ENST00000478943.1:c.-14G>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.629G>A
  hgvsp: ENSP00000438621.1:p.Arg210Lys
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.722G>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.653G>A
  hgvsp: ENSP00000312860.10:p.Arg218Lys
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.788G>A
  hgvsp: ENSP00000368818.3:p.Arg263Lys
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.344G>A
  hgvsp: ENSP00000445188.1:p.Arg115Lys
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.638G>A
  hgvsp: ENSP00000464297.1:p.Arg213Lys
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.653G>A
  hgvsp: ENSP00000379088.4:p.Arg218Lys
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.494G>A
  hgvsp: ENSP00000437655.1:p.Arg165Lys
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000577517
  gene symbol: TOM1L2
  hgvsc: ENST00000577517.1:n.105G>A
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13223
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29972
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10999
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2814
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2360
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Arg263Lys
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: DP
site quality: MQ

17-17772780-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17772780
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17772780
    reference: chr 17
allele count: 1
allele frequency: 8.284317786430287e-6
allele num: 120710
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.626A>G
  hgvsp: ENSP00000438621.1:p.Asn209Ser
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.341A>G
  hgvsp: ENSP00000445188.1:p.Asn114Ser
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.719A>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.650A>G
  hgvsp: ENSP00000312860.10:p.Asn217Ser
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.650A>G
  hgvsp: ENSP00000379088.4:p.Asn217Ser
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.785A>G
  hgvsp: ENSP00000368818.3:p.Asn262Ser
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.635A>G
  hgvsp: ENSP00000464297.1:p.Asn212Ser
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.491A>G
  hgvsp: ENSP00000437655.1:p.Asn164Ser
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000463313
  ensembl transcript: ENST00000478943
  gene symbol: TOM1L2
  hgvsc: ENST00000478943.1:c.-17A>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000577517
  gene symbol: TOM1L2
  hgvsc: ENST00000577517.1:n.102A>G
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2808
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11042
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13166
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29910
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Asn262Ser
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD

17-17772782-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17772782
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17772782
    reference: chr 17
allele count: 8
allele frequency: 6.630969945128723e-5
allele num: 120646
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.783C>A
  hgvsp: ENST00000379504.3:c.783C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.648C>A
  hgvsp: ENST00000395739.4:c.648C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.489C>A
  hgvsp: ENST00000540946.1:c.489C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.624C>A
  hgvsp: ENST00000535933.1:c.624C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.339C>A
  hgvsp: ENST00000542206.1:c.339C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.648C>A
  hgvsp: ENST00000318094.10:c.648C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.717C>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.633C>A
  hgvsp: ENST00000581396.1:c.633C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000463313
  ensembl transcript: ENST00000478943
  gene symbol: TOM1L2
  hgvsc: ENST00000478943.1:c.-19C>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000577517
  gene symbol: TOM1L2
  hgvsc: ENST00000577517.1:n.100C>A
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13152
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10962
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29824
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2805
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 41234
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Leu261Leu
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

17-17772792-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17772792
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17772792
    reference: chr 17
allele count: 1
allele frequency: 8.308546170591069e-6
allele num: 120358
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.334-5C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.712-5C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.484-5C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.619-5C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.778-5C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.628-5C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.643-5C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.643-5C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000463313
  ensembl transcript: ENST00000478943
  gene symbol: TOM1L2
  hgvsc: ENST00000478943.1:c.-29C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000577517
  gene symbol: TOM1L2
  hgvsc: ENST00000577517.1:n.95-5C>T
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10881
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2743
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12916
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29548
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 2.75e1
  variant carriers: 0
hgvs: c.778-5C>T
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
reference allele: G
site quality: DP
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum

17-17772794-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17772794
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17772794
    reference: chr 17
allele count: 1
allele frequency: 8.311861025683651e-6
allele num: 120310
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.628-7T>C
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.484-7T>C
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.643-7T>C
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000463313
  ensembl transcript: ENST00000478943
  gene symbol: TOM1L2
  hgvsc: ENST00000478943.1:c.-31T>C
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.778-7T>C
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.643-7T>C
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.619-7T>C
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.334-7T>C
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.712-7T>C
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000577517
  gene symbol: TOM1L2
  hgvsc: ENST00000577517.1:n.95-7T>C
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2731
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10809
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12841
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29453
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 3.25e1
  variant carriers: 0
hgvs: c.778-7T>C
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: Other
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS

17-17772796-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17772796
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17772796
    reference: chr 17
allele count: 1
allele frequency: 8.317945134833891e-6
allele num: 120222
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.334-9G>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.619-9G>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.778-9G>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000577517
  gene symbol: TOM1L2
  hgvsc: ENST00000577517.1:n.95-9G>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.484-9G>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.643-9G>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.643-9G>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000463313
  ensembl transcript: ENST00000478943
  gene symbol: TOM1L2
  hgvsc: ENST00000478943.1:c.-33G>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.628-9G>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.712-9G>A
  variant of: http://identifiers.org/hgnc/11984
canonical: false
consequence: 5' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2726
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12836
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10698
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29312
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8979
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff

17-17772800-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17772800
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17772800
    reference: chr 17
allele count: 8
allele frequency: 6.666333349999167e-5
allele num: 120006
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000463313
  ensembl transcript: ENST00000478943
  gene symbol: TOM1L2
  hgvsc: ENST00000478943.1:c.-37A>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.619-13A>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.628-13A>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.778-13A>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.484-13A>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.334-13A>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000577517
  gene symbol: TOM1L2
  hgvsc: ENST00000577517.1:n.95-13A>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.712-13A>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.643-13A>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.643-13A>G
  variant of: http://identifiers.org/hgnc/11984
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2696
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28884
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2233
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10221
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12664
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 533
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1145
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/17-17772804-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17772804
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17772804
    reference: chr 17
allele count: 5
allele frequency: 4.177667858694562e-5
allele num: 119684
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.484-17G>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.643-17G>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.628-17G>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000577517
  gene symbol: TOM1L2
  hgvsc: ENST00000577517.1:n.95-17G>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000463313
  ensembl transcript: ENST00000478943
  gene symbol: TOM1L2
  hgvsc: ENST00000478943.1:c.-41G>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.778-17G>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.334-17G>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.712-17G>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.643-17G>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.619-17G>T
  variant of: http://identifiers.org/hgnc/11984
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12356
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1143
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28028
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9837
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2639
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3306
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8552
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38493
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1024
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

17-17772808-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17772808
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17772808
    reference: chr 17
allele count: 1
allele frequency: 8.378156470450242e-6
allele num: 119358
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.484-21A>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.334-21A>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.643-21A>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.778-21A>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.619-21A>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000577517
  gene symbol: TOM1L2
  hgvsc: ENST00000577517.1:n.95-21A>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000463313
  ensembl transcript: ENST00000478943
  gene symbol: TOM1L2
  hgvsc: ENST00000478943.1:c.-45A>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.628-21A>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.643-21A>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.712-21A>G
  variant of: http://identifiers.org/hgnc/11984
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9366
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5032
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26439
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2074
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2560
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11688
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1010
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1696
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1400
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36017
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: South Asian
population: European (Finnish)
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: VQSLOD

17-17772810-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17772810
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17772810
    reference: chr 17
allele count: 1
allele frequency: 8.383775717232013e-6
allele num: 119278
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.484-23C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.628-23C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.643-23C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.619-23C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000577517
  gene symbol: TOM1L2
  hgvsc: ENST00000577517.1:n.95-23C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.778-23C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000463313
  ensembl transcript: ENST00000478943
  gene symbol: TOM1L2
  hgvsc: ENST00000478943.1:c.-47C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.643-23C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.712-23C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.334-23C>T
  variant of: http://identifiers.org/hgnc/11984
canonical: false
consequence: 5' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 11483
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2269
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26149
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2545
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5336
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9367
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1497
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS

17-17772814-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17772814
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17772814
    reference: chr 17
allele count: 2
allele frequency: 1.679571373385512e-5
allele num: 119078
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.484-27C>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.712-27C>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000463313
  ensembl transcript: ENST00000478943
  gene symbol: TOM1L2
  hgvsc: ENST00000478943.1:c.-51C>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.334-27C>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.619-27C>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.643-27C>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.778-27C>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.628-27C>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000577517
  gene symbol: TOM1L2
  hgvsc: ENST00000577517.1:n.95-27C>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.643-27C>G
  variant of: http://identifiers.org/hgnc/11984
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2478
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3682
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7009
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10797
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8801
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24291
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1787
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 478
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: South Asian
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum

17-17772833-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17772833
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17772833
    reference: chr 17
allele count: 1
allele frequency: 8.597417335832316e-6
allele num: 116314
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.643-46G>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.712-46G>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000577517
  gene symbol: TOM1L2
  hgvsc: ENST00000577517.1:n.95-46G>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000463313
  ensembl transcript: ENST00000478943
  gene symbol: TOM1L2
  hgvsc: ENST00000478943.1:c.-70G>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.643-46G>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.334-46G>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.484-46G>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.778-46G>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.628-46G>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.619-46G>A
  variant of: http://identifiers.org/hgnc/11984
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1957
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12109
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17115
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9864
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4992
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10262
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1822
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 910
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 402
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum

17-17772834-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17772834
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17772834
    reference: chr 17
allele count: 3
allele frequency: 2.590047311530891e-5
allele num: 115828
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.619-47C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.628-47C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.334-47C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.643-47C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.643-47C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000463313
  ensembl transcript: ENST00000478943
  gene symbol: TOM1L2
  hgvsc: ENST00000478943.1:c.-71C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.712-47C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.484-47C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000577517
  gene symbol: TOM1L2
  hgvsc: ENST00000577517.1:n.95-47C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.778-47C>T
  variant of: http://identifiers.org/hgnc/11984
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1914
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4596
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10283
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1937
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17038
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13160
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9194
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7676
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4125
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

17-17772839-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17772839
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17772839
    reference: chr 17
allele count: 1
allele frequency: 8.75242879899172e-6
allele num: 114254
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000463313
  ensembl transcript: ENST00000478943
  gene symbol: TOM1L2
  hgvsc: ENST00000478943.1:c.-76T>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.778-52T>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.628-52T>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.712-52T>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.334-52T>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.643-52T>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000577517
  gene symbol: TOM1L2
  hgvsc: ENST00000577517.1:n.95-52T>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.484-52T>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.643-52T>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.619-52T>A
  variant of: http://identifiers.org/hgnc/11984
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16844
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1826
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10312
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14634
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8479
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2223
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3819
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 492
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6780
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5463
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD

17-17782891-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17782891
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17782891
    reference: chr 17
allele count: 2
allele frequency: 1.655492095025246e-5
allele num: 120810
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.711+50G>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.618+50G>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.642+50G>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.642+50G>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.627+50G>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.483+50G>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.777+50G>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.333+50G>A
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4315
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2698
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3967
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3892
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2528
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3239
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5101
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2302
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3137
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5568
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5524
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2093
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2478
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4586
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3006
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48368
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1176
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 632
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 600
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 747
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: Other
population: East Asian
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

17-17782892-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17782892
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17782892
    reference: chr 17
allele count: 1
allele frequency: 8.269246671628215e-6
allele num: 120930
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.642+49C>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.642+49C>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.333+49C>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.777+49C>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.618+49C>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.627+49C>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.711+49C>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.483+49C>A
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4585
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5524
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2718
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2476
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2418
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1521
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2093
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3239
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5103
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3968
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4314
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3892
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3139
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5569
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2528
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 431
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1188
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1373
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum

17-17782895-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17782895
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17782895
    reference: chr 17
allele count: 2
allele frequency: 1.653657891255457e-5
allele num: 120944
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.642+46C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.711+46C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.483+46C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.333+46C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.627+46C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.777+46C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.642+46C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.618+46C>T
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3139
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2648
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2528
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5568
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3892
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2746
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3239
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5159
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5524
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5103
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4585
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4320
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2483
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2093
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3968
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 998
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3655
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48380
  bin: 9.75e1
  variant carriers: 2
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: MQ
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

17-17782899-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17782899
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17782899
    reference: chr 17
allele count: 1
allele frequency: 8.265829062654984e-6
allele num: 120980
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.777+42C>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.642+42C>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.627+42C>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.618+42C>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.642+42C>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.711+42C>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.483+42C>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.333+42C>G
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5569
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3140
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4585
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2500
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3892
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2790
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5159
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4321
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3239
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2948
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3968
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2528
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5102
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2093
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5524
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 757
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1408
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 758
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/17-17782905-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17782905
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17782905
    reference: chr 17
allele count: 1
allele frequency: 8.265829062654984e-6
allele num: 120980
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.642+36G>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.642+36G>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.333+36G>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.483+36G>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.627+36G>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.777+36G>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.618+36G>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.711+36G>T
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3968
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2958
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3892
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5525
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4326
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3153
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3167
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4585
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5159
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2574
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2093
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5569
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3239
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5103
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2527
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 759
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 767
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48394
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
population: African
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

17-17782910-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17782910
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17782910
    reference: chr 17
allele count: 1
allele frequency: 8.259820927082301e-6
allele num: 121068
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.642+31T>C
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.642+31T>C
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.618+31T>C
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.711+31T>C
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.483+31T>C
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.627+31T>C
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.777+31T>C
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.333+31T>C
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5524
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4325
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3282
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5105
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3239
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3892
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3969
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3159
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2093
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3128
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5569
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2601
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5159
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2527
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4585
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1487
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 785
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1028
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff

17-17782919-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17782919
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17782919
    reference: chr 17
allele count: 1
allele frequency: 8.255184255712587e-6
allele num: 121136
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.483+22C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.618+22C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.642+22C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.777+22C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.642+22C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.711+22C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.333+22C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.627+22C>T
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3968
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3393
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2093
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5105
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3892
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2660
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5525
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3361
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5570
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5159
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3164
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4330
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4585
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3240
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2527
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5115
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1014
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

17-17782921-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17782921
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17782921
    reference: chr 17
allele count: 1
allele frequency: 8.253821519363466e-6
allele num: 121156
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.642+20C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.711+20C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.618+20C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.333+20C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.627+20C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.777+20C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.483+20C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.642+20C>T
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4331
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4585
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2670
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3968
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3416
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3165
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2093
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3391
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3240
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2527
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3892
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5159
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5105
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5525
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5570
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1558
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1016
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1044
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD

17-17782926-T-TGAAA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17782926
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17782930
    reference: chr 17
allele count: 1
allele frequency: 8.250688932525866e-6
allele num: 121202
alternate allele: TGAAA
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.777+11_777+14dupTTTC
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.711+11_711+14dupTTTC
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.333+11_333+14dupTTTC
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.618+11_618+14dupTTTC
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.642+11_642+14dupTTTC
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.627+11_627+14dupTTTC
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.642+11_642+14dupTTTC
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.483+11_483+14dupTTTC
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4333
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2527
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3466
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2094
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3240
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3454
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2678
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5524
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3968
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5570
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5105
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3892
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4585
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3166
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5159
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1014
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: South Asian
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP

http://identifiers.org/exac.variant/17-17782929-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17782929
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17782929
    reference: chr 17
allele count: 1
allele frequency: 8.249599894405122e-6
allele num: 121218
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.483+12T>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.618+12T>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.711+12T>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.642+12T>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.627+12T>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.333+12T>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.642+12T>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.777+12T>G
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2093
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4585
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3240
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3495
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3481
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2678
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3892
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5105
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2527
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5524
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3165
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3968
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4333
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1485
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5160
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5570
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1580
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1016
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

17-17782932-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17782932
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17782932
    reference: chr 17
allele count: 1
allele frequency: 8.249327679794096e-6
allele num: 121222
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.642+9T>C
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.627+9T>C
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.642+9T>C
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.777+9T>C
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.618+9T>C
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.711+9T>C
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.483+9T>C
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.333+9T>C
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5524
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5570
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4585
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2527
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3478
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3166
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3892
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2093
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4333
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3519
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3969
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2690
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1485
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5105
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5159
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3240
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 757
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5464
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1584
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff

17-17782946-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17782946
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17782946
    reference: chr 17
allele count: 1
allele frequency: 8.246334504312833e-6
allele num: 121266
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.328C>G
  hgvsp: ENSP00000445188.1:p.Leu110Val
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.622C>G
  hgvsp: ENSP00000464297.1:p.Leu208Val
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.706C>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.637C>G
  hgvsp: ENSP00000379088.4:p.Leu213Val
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.637C>G
  hgvsp: ENSP00000312860.10:p.Leu213Val
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.613C>G
  hgvsp: ENSP00000438621.1:p.Leu205Val
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.478C>G
  hgvsp: ENSP00000437655.1:p.Leu160Val
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.772C>G
  hgvsp: ENSP00000368818.3:p.Leu258Val
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5570
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2093
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3168
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3431
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3638
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2701
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5160
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4333
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1485
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3968
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4586
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2527
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3892
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5107
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3240
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5525
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1196
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1015
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Leu258Val
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQ

17-17782947-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17782947
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17782947
    reference: chr 17
allele count: 3
allele frequency: 2.473777953690877e-5
allele num: 121272
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.771G>A
  hgvsp: ENST00000379504.3:c.771G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.477G>A
  hgvsp: ENST00000540946.1:c.477G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.636G>A
  hgvsp: ENST00000318094.10:c.636G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.327G>A
  hgvsp: ENST00000542206.1:c.327G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.636G>A
  hgvsp: ENST00000395739.4:c.636G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.612G>A
  hgvsp: ENST00000535933.1:c.612G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.621G>A
  hgvsp: ENST00000581396.1:c.621G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.705G>A
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4586
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3893
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3426
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5160
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2709
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3640
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5571
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1485
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3967
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5107
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3171
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5525
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4333
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2093
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3240
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2527
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Leu257Leu
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: C
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

17-17782956-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17782956
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17782956
    reference: chr 17
allele count: 1
allele frequency: 8.24347940778844e-6
allele num: 121308
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.627T>C
  hgvsp: ENST00000395739.4:c.627T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.318T>C
  hgvsp: ENST00000542206.1:c.318T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.612T>C
  hgvsp: ENST00000581396.1:c.612T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.603T>C
  hgvsp: ENST00000535933.1:c.603T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.762T>C
  hgvsp: ENST00000379504.3:c.762T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.696T>C
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.627T>C
  hgvsp: ENST00000318094.10:c.627T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.468T>C
  hgvsp: ENST00000540946.1:c.468T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5525
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2703
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5107
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5571
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3169
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3240
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3652
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3426
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5159
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1485
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2093
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2527
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4331
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4585
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3894
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3967
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48407
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1595
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Asp254Asp
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

17-17782961-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17782961
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17782961
    reference: chr 17
allele count: 1
allele frequency: 8.24347940778844e-6
allele num: 121308
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.598T>C
  hgvsp: ENSP00000438621.1:p.Ser200Pro
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.757T>C
  hgvsp: ENSP00000368818.3:p.Ser253Pro
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.622T>C
  hgvsp: ENSP00000312860.10:p.Ser208Pro
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.691T>C
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.622T>C
  hgvsp: ENSP00000379088.4:p.Ser208Pro
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.607T>C
  hgvsp: ENSP00000464297.1:p.Ser203Pro
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.463T>C
  hgvsp: ENSP00000437655.1:p.Ser155Pro
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.313T>C
  hgvsp: ENSP00000445188.1:p.Ser105Pro
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2699
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3240
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4333
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3168
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3968
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3656
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5571
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5108
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4585
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5524
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5159
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3426
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2093
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3893
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2527
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1486
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser253Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Other
reference allele: A
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/17-17782975-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17782975
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17782975
    reference: chr 17
allele count: 1
allele frequency: 8.245110649384915e-6
allele num: 121284
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.677G>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.608G>T
  hgvsp: ENSP00000379088.4:p.Gly203Val
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.743G>T
  hgvsp: ENSP00000368818.3:p.Gly248Val
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.449G>T
  hgvsp: ENSP00000437655.1:p.Gly150Val
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.299G>T
  hgvsp: ENSP00000445188.1:p.Gly100Val
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.608G>T
  hgvsp: ENSP00000312860.10:p.Gly203Val
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.593G>T
  hgvsp: ENSP00000464297.1:p.Gly198Val
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.584G>T
  hgvsp: ENSP00000438621.1:p.Gly195Val
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3969
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5107
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4584
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5159
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5525
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2697
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3646
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2093
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3240
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1485
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5571
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3399
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2527
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4332
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3168
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3894
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5592
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gly248Val
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: MQ

17-17782976-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17782976
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17782976
    reference: chr 17
allele count: 1
allele frequency: 8.244702778464837e-6
allele num: 121290
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.742G>A
  hgvsp: ENSP00000368818.3:p.Gly248Arg
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.676G>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.607G>A
  hgvsp: ENSP00000379088.4:p.Gly203Arg
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.448G>A
  hgvsp: ENSP00000437655.1:p.Gly150Arg
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.592G>A
  hgvsp: ENSP00000464297.1:p.Gly198Arg
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.583G>A
  hgvsp: ENSP00000438621.1:p.Gly195Arg
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.607G>A
  hgvsp: ENSP00000312860.10:p.Gly203Arg
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.298G>A
  hgvsp: ENSP00000445188.1:p.Gly100Arg
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5108
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5159
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5571
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5525
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3894
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1485
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2697
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3397
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3646
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2527
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3969
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3166
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4332
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4584
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2094
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3240
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 756
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gly248Arg
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD

17-17782980-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17782980
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17782980
    reference: chr 17
allele count: 1
allele frequency: 8.245110649384915e-6
allele num: 121284
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.603C>T
  hgvsp: ENST00000318094.10:c.603C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.444C>T
  hgvsp: ENST00000540946.1:c.444C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.738C>T
  hgvsp: ENST00000379504.3:c.738C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.579C>T
  hgvsp: ENST00000535933.1:c.579C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.294C>T
  hgvsp: ENST00000542206.1:c.294C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.603C>T
  hgvsp: ENST00000395739.4:c.603C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.672C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.588C>T
  hgvsp: ENST00000581396.1:c.588C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3241
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3641
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5524
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3893
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3389
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4332
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5108
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4585
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2696
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2094
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3969
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2527
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1485
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3166
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5160
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5572
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1196
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Val246Val
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD

17-17782987-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17782987
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17782987
    reference: chr 17
allele count: 1
allele frequency: 8.245790523937529e-6
allele num: 121274
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.437A>G
  hgvsp: ENSP00000437655.1:p.Glu146Gly
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.572A>G
  hgvsp: ENSP00000438621.1:p.Glu191Gly
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.596A>G
  hgvsp: ENSP00000379088.4:p.Glu199Gly
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.287A>G
  hgvsp: ENSP00000445188.1:p.Glu96Gly
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.596A>G
  hgvsp: ENSP00000312860.10:p.Glu199Gly
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.581A>G
  hgvsp: ENSP00000464297.1:p.Glu194Gly
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.731A>G
  hgvsp: ENSP00000368818.3:p.Glu244Gly
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.665A>G
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2527
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2094
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5108
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4334
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1485
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4585
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5571
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3631
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3167
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3893
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2696
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5160
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3969
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3381
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3241
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5524
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1585
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Glu244Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: QD

17-17782990-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17782990
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17782990
    reference: chr 17
allele count: 2
allele frequency: 1.649185302460584e-5
allele num: 121272
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.284C>T
  hgvsp: ENSP00000445188.1:p.Thr95Ile
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.434C>T
  hgvsp: ENSP00000437655.1:p.Thr145Ile
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.593C>T
  hgvsp: ENSP00000379088.4:p.Thr198Ile
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.593C>T
  hgvsp: ENSP00000312860.10:p.Thr198Ile
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.662C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.578C>T
  hgvsp: ENSP00000464297.1:p.Thr193Ile
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.569C>T
  hgvsp: ENSP00000438621.1:p.Thr190Ile
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.728C>T
  hgvsp: ENSP00000368818.3:p.Thr243Ile
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1485
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3634
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5524
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5160
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3241
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2695
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3894
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4584
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3168
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3382
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3969
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2527
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5108
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2094
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4335
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5572
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Thr243Ile
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

17-17782994-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17782994
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17782994
    reference: chr 17
allele count: 1
allele frequency: 8.246334504312833e-6
allele num: 121266
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.724T>C
  hgvsp: ENST00000379504.3:c.724T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.574T>C
  hgvsp: ENST00000581396.1:c.574T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.589T>C
  hgvsp: ENST00000395739.4:c.589T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.430T>C
  hgvsp: ENST00000540946.1:c.430T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.589T>C
  hgvsp: ENST00000318094.10:c.589T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.280T>C
  hgvsp: ENST00000542206.1:c.280T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.658T>C
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.565T>C
  hgvsp: ENST00000535933.1:c.565T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4334
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2691
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3169
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5571
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2527
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3241
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3629
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3968
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3379
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5524
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2094
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5108
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3895
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5160
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4584
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1485
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1008
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Leu242Leu
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum

17-17783002-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17783002
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17783002
    reference: chr 17
allele count: 1
allele frequency: 8.246878556466378e-6
allele num: 121258
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.650C>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.716C>A
  hgvsp: ENSP00000368818.3:p.Ser239Tyr
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.272C>A
  hgvsp: ENSP00000445188.1:p.Ser91Tyr
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.422C>A
  hgvsp: ENSP00000437655.1:p.Ser141Tyr
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.581C>A
  hgvsp: ENSP00000379088.4:p.Ser194Tyr
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.557C>A
  hgvsp: ENSP00000438621.1:p.Ser186Tyr
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.566C>A
  hgvsp: ENSP00000464297.1:p.Ser189Tyr
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.581C>A
  hgvsp: ENSP00000312860.10:p.Ser194Tyr
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4584
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2527
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2689
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5524
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4334
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3393
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3625
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5160
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3895
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5108
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3968
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5571
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1485
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3168
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2095
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3241
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1579
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1007
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ser239Tyr
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ

http://identifiers.org/exac.variant/17-17783009-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17783009
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17783009
    reference: chr 17
allele count: 1
allele frequency: 8.246198502490351e-6
allele num: 121268
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.574G>T
  hgvsp: ENSP00000379088.4:p.Val192Phe
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.265G>T
  hgvsp: ENSP00000445188.1:p.Val89Phe
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.574G>T
  hgvsp: ENSP00000312860.10:p.Val192Phe
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.415G>T
  hgvsp: ENSP00000437655.1:p.Val139Phe
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.559G>T
  hgvsp: ENSP00000464297.1:p.Val187Phe
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.709G>T
  hgvsp: ENSP00000368818.3:p.Val237Phe
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.643G>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.550G>T
  hgvsp: ENSP00000438621.1:p.Val184Phe
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3968
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3894
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2689
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3376
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3168
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5571
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3241
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3623
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4584
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4333
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5108
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2095
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1485
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2528
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5160
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5524
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 763
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1577
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Val237Phe
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

17-17783012-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17783012
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17783012
    reference: chr 17
allele count: 1
allele frequency: 8.246742536698004e-6
allele num: 121260
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.571A>G
  hgvsp: ENSP00000379088.4:p.Lys191Glu
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.706A>G
  hgvsp: ENSP00000368818.3:p.Lys236Glu
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.412A>G
  hgvsp: ENSP00000437655.1:p.Lys138Glu
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.556A>G
  hgvsp: ENSP00000464297.1:p.Lys186Glu
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.640A>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.547A>G
  hgvsp: ENSP00000438621.1:p.Lys183Glu
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.262A>G
  hgvsp: ENSP00000445188.1:p.Lys88Glu
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.571A>G
  hgvsp: ENSP00000312860.10:p.Lys191Glu
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4333
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5161
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1485
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5109
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3967
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3241
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2691
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3167
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2095
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2527
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3617
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4584
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3358
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3895
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5571
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5524
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5543
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1007
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1577
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1196
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Lys236Glu
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: DP

17-17783017-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17783017
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17783017
    reference: chr 17
allele count: 1
allele frequency: 8.24715060946443e-6
allele num: 121254
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.407A>G
  hgvsp: ENSP00000437655.1:p.Asn136Ser
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.566A>G
  hgvsp: ENSP00000312860.10:p.Asn189Ser
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.551A>G
  hgvsp: ENSP00000464297.1:p.Asn184Ser
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.542A>G
  hgvsp: ENSP00000438621.1:p.Asn181Ser
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.257A>G
  hgvsp: ENSP00000445188.1:p.Asn86Ser
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.635A>G
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.701A>G
  hgvsp: ENSP00000368818.3:p.Asn234Ser
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.566A>G
  hgvsp: ENSP00000379088.4:p.Asn189Ser
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3168
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3895
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4334
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5108
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1485
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3608
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3241
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5524
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2527
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3359
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4584
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2095
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5161
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3967
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2690
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5571
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1576
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1007
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Asn234Ser
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum

17-17783024-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17783024
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17783024
    reference: chr 17
allele count: 1
allele frequency: 8.248647221855616e-6
allele num: 121232
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.559C>T
  hgvsp: ENSP00000379088.4:p.Arg187Ter
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.559C>T
  hgvsp: ENSP00000312860.10:p.Arg187Ter
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.250C>T
  hgvsp: ENSP00000445188.1:p.Arg84Ter
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.544C>T
  hgvsp: ENSP00000464297.1:p.Arg182Ter
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.535C>T
  hgvsp: ENSP00000438621.1:p.Arg179Ter
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.400C>T
  hgvsp: ENSP00000437655.1:p.Arg134Ter
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.694C>T
  hgvsp: ENSP00000368818.3:p.Arg232Ter
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.628C>T
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5524
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5571
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4335
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3354
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5107
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3896
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2527
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3967
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5161
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3165
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2693
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3602
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4584
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2095
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3241
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1566
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48408
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 758
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg232Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQ

17-17783027-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17783027
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17783027
    reference: chr 17
allele count: 1
allele frequency: 8.247966876165026e-6
allele num: 121242
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.397G>A
  hgvsp: ENSP00000437655.1:p.Val133Ile
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.556G>A
  hgvsp: ENSP00000312860.10:p.Val186Ile
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.625G>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.691G>A
  hgvsp: ENSP00000368818.3:p.Val231Ile
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.541G>A
  hgvsp: ENSP00000464297.1:p.Val181Ile
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.556G>A
  hgvsp: ENSP00000379088.4:p.Val186Ile
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.247G>A
  hgvsp: ENSP00000445188.1:p.Val83Ile
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.532G>A
  hgvsp: ENSP00000438621.1:p.Val178Ile
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3165
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4334
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3897
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3241
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5106
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5161
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3593
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5524
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4584
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2692
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3966
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3367
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5571
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2095
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2527
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48408
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Val231Ile
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: C
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum

17-17783028-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17783028
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17783028
    reference: chr 17
allele count: 1
allele frequency: 8.248375070111188e-6
allele num: 121236
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.555C>A
  hgvsp: ENST00000318094.10:c.555C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.396C>A
  hgvsp: ENST00000540946.1:c.396C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.690C>A
  hgvsp: ENST00000379504.3:c.690C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.246C>A
  hgvsp: ENST00000542206.1:c.246C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.624C>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.555C>A
  hgvsp: ENST00000395739.4:c.555C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.540C>A
  hgvsp: ENST00000581396.1:c.540C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.531C>A
  hgvsp: ENST00000535933.1:c.531C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3897
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5161
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3594
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2528
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5571
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5524
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1483
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3966
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2095
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4334
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3368
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2692
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3165
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5106
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4584
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3241
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1196
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1561
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5533
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Val230Val
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD

17-17783030-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17783030
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17783030
    reference: chr 17
allele count: 1
allele frequency: 8.248511143738554e-6
allele num: 121234
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.529G>A
  hgvsp: ENSP00000438621.1:p.Val177Ile
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.538G>A
  hgvsp: ENSP00000464297.1:p.Val180Ile
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.553G>A
  hgvsp: ENSP00000379088.4:p.Val185Ile
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.688G>A
  hgvsp: ENSP00000368818.3:p.Val230Ile
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.622G>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.244G>A
  hgvsp: ENSP00000445188.1:p.Val82Ile
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.394G>A
  hgvsp: ENSP00000437655.1:p.Val132Ile
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.553G>A
  hgvsp: ENSP00000312860.10:p.Val185Ile
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5571
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3377
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2096
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2687
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2528
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4584
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3966
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3595
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5524
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3241
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4334
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3165
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5106
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3897
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5160
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1483
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1564
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Val230Ile
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

17-17783031-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17783031
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17783031
    reference: chr 17
allele count: 4
allele frequency: 3.299513321785036e-5
allele num: 121230
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.528C>T
  hgvsp: ENST00000535933.1:c.528C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.393C>T
  hgvsp: ENST00000540946.1:c.393C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.552C>T
  hgvsp: ENST00000395739.4:c.552C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.243C>T
  hgvsp: ENST00000542206.1:c.243C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.621C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.552C>T
  hgvsp: ENST00000318094.10:c.552C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.537C>T
  hgvsp: ENST00000581396.1:c.537C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.687C>T
  hgvsp: ENST00000379504.3:c.687C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4334
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2689
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5524
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5160
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5572
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3240
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3966
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3380
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4583
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3163
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2097
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5106
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3592
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2527
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3898
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1563
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 758
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Asp229Asp
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: DP

17-17783043-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17783043
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17783043
    reference: chr 17
allele count: 1
allele frequency: 8.251642076773278e-6
allele num: 121188
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.540G>C
  hgvsp: ENST00000395739.4:c.540G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.231G>C
  hgvsp: ENST00000542206.1:c.231G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.525G>C
  hgvsp: ENST00000581396.1:c.525G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.540G>C
  hgvsp: ENST00000318094.10:c.540G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.516G>C
  hgvsp: ENST00000535933.1:c.516G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.675G>C
  hgvsp: ENST00000379504.3:c.675G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.381G>C
  hgvsp: ENST00000540946.1:c.381G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.609G>C
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3137
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3588
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2673
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3240
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5160
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5524
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3380
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5105
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4323
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2096
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5570
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3966
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3899
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4583
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2527
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48405
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1559
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 758
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg225Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: Other
population: East Asian
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

17-17783044-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17783044
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17783044
    reference: chr 17
allele count: 2
allele frequency: 1.650382888830209e-5
allele num: 121184
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.539G>A
  hgvsp: ENSP00000312860.10:p.Arg180Gln
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.524G>A
  hgvsp: ENSP00000464297.1:p.Arg175Gln
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.230G>A
  hgvsp: ENSP00000445188.1:p.Arg77Gln
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.515G>A
  hgvsp: ENSP00000438621.1:p.Arg172Gln
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.539G>A
  hgvsp: ENSP00000379088.4:p.Arg180Gln
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.380G>A
  hgvsp: ENSP00000437655.1:p.Arg127Gln
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.608G>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.674G>A
  hgvsp: ENSP00000368818.3:p.Arg225Gln
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5523
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3133
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5104
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3241
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3594
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4583
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2665
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5160
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5570
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4320
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2095
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3900
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2527
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3966
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3383
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1006
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg225Gln
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

17-17783045-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17783045
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17783045
    reference: chr 17
allele count: 6
allele frequency: 4.951148666490626e-5
allele num: 121184
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.538C>T
  hgvsp: ENSP00000312860.10:p.Arg180Trp
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.514C>T
  hgvsp: ENSP00000438621.1:p.Arg172Trp
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.229C>T
  hgvsp: ENSP00000445188.1:p.Arg77Trp
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.538C>T
  hgvsp: ENSP00000379088.4:p.Arg180Trp
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.523C>T
  hgvsp: ENSP00000464297.1:p.Arg175Trp
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.673C>T
  hgvsp: ENSP00000368818.3:p.Arg225Trp
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.607C>T
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.379C>T
  hgvsp: ENSP00000437655.1:p.Arg127Trp
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3594
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5522
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5571
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2528
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4319
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5160
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2665
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3242
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3125
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2095
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3965
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5103
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3902
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4583
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3389
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48407
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg225Trp
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff

17-17783049-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17783049
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 17783049
    reference: chr 17
allele count: 1
allele frequency: 8.251778258214646e-6
allele num: 121186
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000464297
  ensembl transcript: ENST00000581396
  gene symbol: TOM1L2
  hgvsc: ENST00000581396.1:c.519G>A
  hgvsp: ENST00000581396.1:c.519G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000438621
  ensembl transcript: ENST00000535933
  gene symbol: TOM1L2
  hgvsc: ENST00000535933.1:c.510G>A
  hgvsp: ENST00000535933.1:c.510G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000379088
  ensembl transcript: ENST00000395739
  gene symbol: TOM1L2
  hgvsc: ENST00000395739.4:c.534G>A
  hgvsp: ENST00000395739.4:c.534G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000445188
  ensembl transcript: ENST00000542206
  gene symbol: TOM1L2
  hgvsc: ENST00000542206.1:c.225G>A
  hgvsp: ENST00000542206.1:c.225G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000312860
  ensembl transcript: ENST00000318094
  gene symbol: TOM1L2
  hgvsc: ENST00000318094.10:c.534G>A
  hgvsp: ENST00000318094.10:c.534G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175662
  ensembl transcript: ENST00000537091
  gene symbol: TOM1L2
  hgvsc: ENST00000537091.2:n.603G>A
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000437655
  ensembl transcript: ENST00000540946
  gene symbol: TOM1L2
  hgvsc: ENST00000540946.1:c.375G>A
  hgvsp: ENST00000540946.1:c.375G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175662
  ensembl protein: ENSP00000368818
  ensembl transcript: ENST00000379504
  gene symbol: TOM1L2
  hgvsc: ENST00000379504.3:c.669G>A
  hgvsp: ENST00000379504.3:c.669G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11984
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2096
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2657
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2527
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4319
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5104
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4583
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3401
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3965
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3588
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5570
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5160
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3901
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Arg223Arg
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 477
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2454
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9782
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1786
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 41142
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 600
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2591
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.899671370578001e-4
allele num: 10346
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66478
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8562
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.868e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.08e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.2e-2

MQ
type: SiteQuality
SIO_000300: 5.866e1

DP
type: SiteQuality
SIO_000300: 1.742728e6

VQSLOD
type: SiteQuality
SIO_000300: -9.342e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.32e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.2e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.11e-1

QD
type: SiteQuality
SIO_000300: 1.111e1

GenotypeQuality
all individuals: 601
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2592
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2453
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9778
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1787
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1356
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 476
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66502
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.425712553062462e-4
allele num: 16490
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10348
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.274e1

VQSLOD
type: SiteQuality
SIO_000300: 5.56e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.0e-2

DP
type: SiteQuality
SIO_000300: 1.743096e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.08e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.7e-2

FS
type: SiteQuality
SIO_000300: 8.346e0

MQ
type: SiteQuality
SIO_000300: 5.92e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.07e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.77e-1

GenotypeQuality
all individuals: 2450
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9784
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41168
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1785
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 601
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2595
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 476
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10352
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66514
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.658008658008658e-5
allele num: 11550
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.2e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.924e0

MQRankSum
type: SiteQuality
SIO_000300: -2.24e-1

FS
type: SiteQuality
SIO_000300: 1.74e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.19e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.14e-1

DP
type: SiteQuality
SIO_000300: 1.743412e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-3

QD
type: SiteQuality
SIO_000300: 1.268e1

MQ
type: SiteQuality
SIO_000300: 5.907e1

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9784
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2450
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2595
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 601
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41168
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1355
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 476
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.063545961678389e-5
allele num: 16492
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66514
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 3.863987635239567e-4
allele num: 10352
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.907e1

FS
type: SiteQuality
SIO_000300: 1.74e0

DP
type: SiteQuality
SIO_000300: 1.743412e6

MQRankSum
type: SiteQuality
SIO_000300: -2.24e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.2e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.19e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.924e0

QD
type: SiteQuality
SIO_000300: 1.268e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.14e-1

GenotypeQuality
all individuals: 9780
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 601
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41199
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10354
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.659508139937652e-5
allele num: 11548
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66526
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.94e-1

FS
type: SiteQuality
SIO_000300: 1.181e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-2

MQ
type: SiteQuality
SIO_000300: 5.956e1

QD
type: SiteQuality
SIO_000300: 1.555e1

DP
type: SiteQuality
SIO_000300: 1.743251e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.58e0

MQRankSum
type: SiteQuality
SIO_000300: 1.12e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.31e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.21e-1

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41210
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
all individuals: 217
bin: 2.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502810255177181e-5
allele num: 66542
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.649999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.95e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.55e-1

MQ
type: SiteQuality
SIO_000300: 5.939e1

VQSLOD
type: SiteQuality
SIO_000300: 2.48e0

DP
type: SiteQuality
SIO_000300: 1.743847e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.16e-1

FS
type: SiteQuality
SIO_000300: 8.94e-1

QD
type: SiteQuality
SIO_000300: 1.418e1

GenotypeQuality
all individuals: 48
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 5

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2448
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10354
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.514051275885907e-5
allele num: 66542
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.37e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.14e0

MQ
type: SiteQuality
SIO_000300: 5.895e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.59e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.3e-2

QD
type: SiteQuality
SIO_000300: 1.169e1

VQSLOD
type: SiteQuality
SIO_000300: 5.2e-2

DP
type: SiteQuality
SIO_000300: 1.744255e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.18e-1

GenotypeQuality
all individuals: 24
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 601
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
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GenotypeQuality
all individuals: 22
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 13

GenotypeQuality
all individuals: 42
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10360
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66544
num of homozygotes: 0

South Asian
type: Population
allele count: 13
allele frequency: 7.878787878787879e-4
allele num: 16500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.2e-2

MQ
type: SiteQuality
SIO_000300: 5.911e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.9e-3

MQRankSum
type: SiteQuality
SIO_000300: -4.93e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.88e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -8.1e-2

QD
type: SiteQuality
SIO_000300: 1.285e1

FS
type: SiteQuality
SIO_000300: 3.272e0

DP
type: SiteQuality
SIO_000300: 1.744532e6

GenotypeQuality
all individuals: 19
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2595
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variant carriers: 0

GenotypeQuality
all individuals: 2453
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10360
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.652015919709292e-5
allele num: 11558
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.550000000000001e0

VQSLOD
type: SiteQuality
SIO_000300: -1.438e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.99e-1

FS
type: SiteQuality
SIO_000300: 1.2997e1

MQRankSum
type: SiteQuality
SIO_000300: -4.99e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.69e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 3.38e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.743798e6

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1981
bin: 9.75e1
variant carriers: 304

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502223290469895e-5
allele num: 66568
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.108647450110865e-3
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 11
allele frequency: 9.518864659051575e-4
allele num: 11556
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

African
type: Population
allele count: 297
allele frequency: 2.866795366795367e-2
allele num: 10360
num of homozygotes: 6

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.07e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.312e0

MQ
type: SiteQuality
SIO_000300: 5.902e1

QD
type: SiteQuality
SIO_000300: 1.435e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.0e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.11e0

DP
type: SiteQuality
SIO_000300: 1.754101e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.65e-2

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 466
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GenotypeQuality
all individuals: 1701
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.162250116225012e-4
allele num: 8604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66556
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.51e0

FS
type: SiteQuality
SIO_000300: 4.415e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.9e-1

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.855e1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.85e-1

DP
type: SiteQuality
SIO_000300: 1.740793e6

MQRankSum
type: SiteQuality
SIO_000300: -2.11e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.3e-2

GenotypeQuality
all individuals: 242
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variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 38
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 1704
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variant carriers: 7

GenotypeQuality
all individuals: 44
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2576
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GenotypeQuality
all individuals: 62
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 583
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 7
allele frequency: 8.135750813575082e-4
allele num: 8604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10358
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66556
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.32e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.740894e6

QD
type: SiteQuality
SIO_000300: 1.443e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 3.43e0

VQSLOD
type: SiteQuality
SIO_000300: 5.580000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.936e1

MQRankSum
type: SiteQuality
SIO_000300: -4.12e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.0e-2

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 2567
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 70
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10360
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.502629601803156e-5
allele num: 66550
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.15e-1

DP
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SIO_000300: 1.739951e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.03e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.59e-1

FS
type: SiteQuality
SIO_000300: 3.946e0

QD
type: SiteQuality
SIO_000300: 1.375e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.8e-2

MQ
type: SiteQuality
SIO_000300: 5.961e1

VQSLOD
type: SiteQuality
SIO_000300: 7.75e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 7

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502810255177181e-5
allele num: 66542
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.646840148698885e-4
allele num: 8608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.653513326410523e-5
allele num: 11556
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.652509652509652e-5
allele num: 10360
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.25e0

MQRankSum
type: SiteQuality
SIO_000300: -3.62e-1

FS
type: SiteQuality
SIO_000300: 1.152e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

MQ
type: SiteQuality
SIO_000300: 5.928e1

DP
type: SiteQuality
SIO_000300: 1.739919e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.0e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.26e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.52e-1

QD
type: SiteQuality
SIO_000300: 1.285e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1686
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502584445245823e-5
allele num: 66552
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10360
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.521e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.53e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.2e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.04e-1

QD
type: SiteQuality
SIO_000300: 1.557e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.01e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.37e0

MQ
type: SiteQuality
SIO_000300: 5.901e1

DP
type: SiteQuality
SIO_000300: 1.738701e6

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 300
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 9

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

African
type: Population
allele count: 9
allele frequency: 8.688936088047886e-4
allele num: 10358
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66536
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.87e-1

QD
type: SiteQuality
SIO_000300: 1.328e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 7.94e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.5e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.16e-1

MQ
type: SiteQuality
SIO_000300: 5.881e1

FS
type: SiteQuality
SIO_000300: 5.55e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.45e-1

DP
type: SiteQuality
SIO_000300: 1.73798e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.510057428064584e-5
allele num: 66518
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.064281382656155e-5
allele num: 16490
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQRankSum
type: SiteQuality
SIO_000300: 9.77e-1

FS
type: SiteQuality
SIO_000300: 2.208e0

ClippingRankSum
type: SiteQuality
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BaseQRankSum
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QD
type: SiteQuality
SIO_000300: 1.121e1

DP
type: SiteQuality
SIO_000300: 1.736053e6

MQ
type: SiteQuality
SIO_000300: 5.922e1

VQSLOD
type: SiteQuality
SIO_000300: 3.57e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10354
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 1
allele frequency: 6.067224851352991e-5
allele num: 16482
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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DP
type: SiteQuality
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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MQ
type: SiteQuality
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QD
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MQRankSum
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FS
type: SiteQuality
SIO_000300: 9.3e-1

BaseQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504392827055001e-5
allele num: 66472
num of homozygotes: 0

Latino
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allele count: 0
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Other
type: Population
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East Asian
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InbreedingCoeff
type: SiteQuality
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MQ
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DP
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VQSLOD
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BaseQRankSum
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QD
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MQRankSum
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ReadPosRankSum
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FS
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ClippingRankSum
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SIO_000300: 1.18e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

African
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allele count: 1
allele frequency: 9.659969088098918e-5
allele num: 10352
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16476
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66472
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.937e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.679e0

FS
type: SiteQuality
SIO_000300: 7.52e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.13e-1

QD
type: SiteQuality
SIO_000300: 2.537e1

VQSLOD
type: SiteQuality
SIO_000300: -3.189e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.035e0

DP
type: SiteQuality
SIO_000300: 1.731302e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.0e0

GenotypeQuality
all individuals: 2313
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504890895410083e-5
allele num: 66450
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10352
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.19e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.24e0

VQSLOD
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SIO_000300: -1.985e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.82e-1

FS
type: SiteQuality
SIO_000300: 7.07e-1

DP
type: SiteQuality
SIO_000300: 1.730352e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.08e0

QD
type: SiteQuality
SIO_000300: 2.742e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQ
type: SiteQuality
SIO_000300: 5.792e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.52114390021296e-4
allele num: 6574
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.734304543877905e-4
allele num: 11532
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10350
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66438
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.14e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.109e0

FS
type: SiteQuality
SIO_000300: 1.395e0

MQRankSum
type: SiteQuality
SIO_000300: 1.1e-2

QD
type: SiteQuality
SIO_000300: 9.75e0

DP
type: SiteQuality
SIO_000300: 1.729246e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.68e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.28e-1

MQ
type: SiteQuality
SIO_000300: 5.959e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1650
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16454
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505842669557885e-5
allele num: 66408
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10340
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.51e0

MQRankSum
type: SiteQuality
SIO_000300: 7.24e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.422e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.7e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.82e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

QD
type: SiteQuality
SIO_000300: 1.216e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.724251e6

MQ
type: SiteQuality
SIO_000300: 5.873e1

GenotypeQuality
all individuals: 171
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9276
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 41512
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10332
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506341698550899e-5
allele num: 66386
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16444
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.24e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.62e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.137e0

FS
type: SiteQuality
SIO_000300: 1.408e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQ
type: SiteQuality
SIO_000300: 5.928e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.34e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.48e-1

DP
type: SiteQuality
SIO_000300: 1.722231e6

QD
type: SiteQuality
SIO_000300: 1.523e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16440
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6544
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10328
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.205763549767891e-4
allele num: 66348
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.719669e6

QD
type: SiteQuality
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MQRankSum
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VQSLOD
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BaseQRankSum
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FS
type: SiteQuality
SIO_000300: 5.86e-1

MQ
type: SiteQuality
SIO_000300: 5.936e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -4.86e-1

ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510482750286992e-5
allele num: 66204
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6516
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.707401e6

QD
type: SiteQuality
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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VQSLOD
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MQ
type: SiteQuality
SIO_000300: 5.783e1

BaseQRankSum
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SIO_000300: 1.55e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 437
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66168
num of homozygotes: 0

South Asian
type: Population
allele count: 0
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East Asian
type: Population
allele count: 1
allele frequency: 1.166316771635176e-4
allele num: 8574
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6516
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10318
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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QD
type: SiteQuality
SIO_000300: 1.132e1

VQSLOD
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BaseQRankSum
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ReadPosRankSum
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MQ
type: SiteQuality
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ClippingRankSum
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DP
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MQRankSum
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 4.272e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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East Asian
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South Asian
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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Other
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FS
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ClippingRankSum
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MQRankSum
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VQSLOD
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QD
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ReadPosRankSum
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MQ
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DP
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BaseQRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.211680600993578e-4
allele num: 66024
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Other
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MQRankSum
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QD
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VQSLOD
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FS
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InbreedingCoeff
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ReadPosRankSum
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MQ
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DP
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BaseQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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South Asian
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African
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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InbreedingCoeff
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QD
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BaseQRankSum
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MQRankSum
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FS
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MQ
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ReadPosRankSum
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ClippingRankSum
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VQSLOD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 9.746588693957115e-5
allele num: 10260
num of homozygotes: 0

Latino
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num of homozygotes: 0

Other
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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ReadPosRankSum
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DP
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MQ
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MQRankSum
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QD
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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South Asian
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Other
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European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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African
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Latino
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QD
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ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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MQ
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InbreedingCoeff
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MQRankSum
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DP
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VQSLOD
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

East Asian
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European (Non-Finnish)
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Latino
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Other
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African
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South Asian
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QD
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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FS
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MQ
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BaseQRankSum
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InbreedingCoeff
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DP
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Finnish)
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Latino
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Other
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African
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East Asian
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European (Non-Finnish)
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allele num: 64026
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VQSLOD
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QD
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ReadPosRankSum
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InbreedingCoeff
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FS
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ClippingRankSum
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BaseQRankSum
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DP
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MQ
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Non-Finnish)
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South Asian
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East Asian
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European (Finnish)
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African
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InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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MQ
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QD
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FS
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ReadPosRankSum
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MQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1589
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1178
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 908
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.239157372986369e-4
allele num: 8070
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10674
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15544
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6282
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9994
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62822
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.89e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.69e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.93e-1

MQ
type: SiteQuality
SIO_000300: 5.882e1

FS
type: SiteQuality
SIO_000300: 3.023e0

DP
type: SiteQuality
SIO_000300: 1.291052e6

VQSLOD
type: SiteQuality
SIO_000300: -1.43e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.66e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

QD
type: SiteQuality
SIO_000300: 1.247e1

GenotypeQuality
all individuals: 32
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 448
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1003
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 734
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 389
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16158
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.005981903988938e-5
allele num: 66534
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.11e-2

QD
type: SiteQuality
SIO_000300: 1.274e1

FS
type: SiteQuality
SIO_000300: 8.63e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.095e0

MQRankSum
type: SiteQuality
SIO_000300: 1.8e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.42e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.71e0

VQSLOD
type: SiteQuality
SIO_000300: 5.44e-1

DP
type: SiteQuality
SIO_000300: 3.500955e6

GenotypeQuality
all individuals: 238
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1001
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 748
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 745
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16258
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.46e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.07e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.37e-2

DP
type: SiteQuality
SIO_000300: 3.501723e6

MQ
type: SiteQuality
SIO_000300: 5.936e1

QD
type: SiteQuality
SIO_000300: 1.363e1

FS
type: SiteQuality
SIO_000300: 1.0387e1

VQSLOD
type: SiteQuality
SIO_000300: -9.539e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.3e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.58e-1

GenotypeQuality
all individuals: 750
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 507
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 24
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 10
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 363
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GenotypeQuality
all individuals: 321
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.622786759045419e-5
allele num: 10392
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16268
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66544
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.646031471554557e-5
allele num: 11566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.203e1

FS
type: SiteQuality
SIO_000300: 1.3214e1

MQRankSum
type: SiteQuality
SIO_000300: 1.21e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.64e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.853e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.115e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -4.57e-1

DP
type: SiteQuality
SIO_000300: 3.503202e6

GenotypeQuality
all individuals: 1194
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1014
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1004
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 379
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GenotypeQuality
all individuals: 16
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variant carriers: 0

GenotypeQuality
all individuals: 48389
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variant carriers: 1

GenotypeQuality
all individuals: 326
bin: 2.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66568
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.622786759045419e-5
allele num: 10392
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16280
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.82e-1

FS
type: SiteQuality
SIO_000300: 4.363e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -9.29e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.26e-1

QD
type: SiteQuality
SIO_000300: 1.629e1

DP
type: SiteQuality
SIO_000300: 3.50534e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.293e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e0

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 188
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variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 307
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GenotypeQuality
all individuals: 4347
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 220
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GenotypeQuality
all individuals: 1006
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 178
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variant carriers: 0

GenotypeQuality
all individuals: 1006
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1419
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502403846153846e-5
allele num: 66560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16290
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.07e-2

DP
type: SiteQuality
SIO_000300: 3.51025e6

MQRankSum
type: SiteQuality
SIO_000300: 1.35e0

VQSLOD
type: SiteQuality
SIO_000300: -1.193e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.3e-2

MQ
type: SiteQuality
SIO_000300: 5.587e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.441e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.27e-1

QD
type: SiteQuality
SIO_000300: 6.68e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1020
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GenotypeQuality
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GenotypeQuality
all individuals: 9
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GenotypeQuality
all individuals: 48398
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16342
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.622786759045419e-5
allele num: 10392
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66594
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.57e-1

FS
type: SiteQuality
SIO_000300: 8.110000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.52e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.33e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.14e0

DP
type: SiteQuality
SIO_000300: 3.513795e6

MQ
type: SiteQuality
SIO_000300: 5.924e1

QD
type: SiteQuality
SIO_000300: 9.73e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.8e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.15e-2

GenotypeQuality
all individuals: 199
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 781
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.101281269066504e-5
allele num: 16390
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.723e0

QD
type: SiteQuality
SIO_000300: 1.046e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.35e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.11e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -4.246e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.14e0

DP
type: SiteQuality
SIO_000300: 3.519364e6

ClippingRankSum
type: SiteQuality
SIO_000300: 8.01e-1

GenotypeQuality
all individuals: 67
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
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GenotypeQuality
all individuals: 190
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 784
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.093102607847916e-5
allele num: 16412
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66616
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.004e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.67e0

QD
type: SiteQuality
SIO_000300: 1.41e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.15e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.63e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.532e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 3.520195e6

VQSLOD
type: SiteQuality
SIO_000300: 1.22e-1

GenotypeQuality
all individuals: 1045
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 780
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GenotypeQuality
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GenotypeQuality
all individuals: 1580
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GenotypeQuality
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GenotypeQuality
all individuals: 757
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GenotypeQuality
all individuals: 1196
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66626
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.081245439065921e-5
allele num: 16444
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.461e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -6.12e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.4e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
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SIO_000300: 1.682e1

VQSLOD
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SIO_000300: 2.44e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.71e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.38e0

DP
type: SiteQuality
SIO_000300: 3.521981e6

GenotypeQuality
all individuals: 51
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16454
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500780405811022e-5
allele num: 66632
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.116e1

FS
type: SiteQuality
SIO_000300: 2.404e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.3e0

MQ
type: SiteQuality
SIO_000300: 5.969e1

VQSLOD
type: SiteQuality
SIO_000300: -9.36e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -7.65e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.08e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.522609e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.36e0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.644536652835408e-5
allele num: 11568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16452
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66636
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.02e0

VQSLOD
type: SiteQuality
SIO_000300: 4.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.56e0

DP
type: SiteQuality
SIO_000300: 3.523153e6

MQRankSum
type: SiteQuality
SIO_000300: 8.62e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.08e-1

FS
type: SiteQuality
SIO_000300: 5.246e0

QD
type: SiteQuality
SIO_000300: 1.351e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500330072615976e-5
allele num: 66652
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.86e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.899999999999999e-1

DP
type: SiteQuality
SIO_000300: 3.524944e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.92e0

VQSLOD
type: SiteQuality
SIO_000300: -1.191e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.02e-1

QD
type: SiteQuality
SIO_000300: 1.112e1

FS
type: SiteQuality
SIO_000300: 3.134e0

MQ
type: SiteQuality
SIO_000300: 5.936e1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.50112528132033e-5
allele num: 66650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.184e1

FS
type: SiteQuality
SIO_000300: 4.25e0

VQSLOD
type: SiteQuality
SIO_000300: 1.03e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.26e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 3.525259e6

MQRankSum
type: SiteQuality
SIO_000300: -6.4e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.58e-1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06060606060606e-5
allele num: 16500
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66676
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.57e0

VQSLOD
type: SiteQuality
SIO_000300: -3.351e-1

MQ
type: SiteQuality
SIO_000300: 5.936e1

FS
type: SiteQuality
SIO_000300: 6.057e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.59e-1

DP
type: SiteQuality
SIO_000300: 3.525385e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.59e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.14e-1

QD
type: SiteQuality
SIO_000300: 1.02e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66678
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.644536652835408e-5
allele num: 11568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.946e1

MQRankSum
type: SiteQuality
SIO_000300: 2.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.93e-1

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 3.962e0

BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 3.5254e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.99e-1

QD
type: SiteQuality
SIO_000300: 1.197e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499790029395885e-5
allele num: 66676
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 1.12e-1

ReadPosRankSum
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.948e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 9.635767970707265e-5
allele num: 10378
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66676
num of homozygotes: 0

DP
type: SiteQuality
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MQ
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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QD
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VQSLOD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06134076857801e-5
allele num: 16498
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66674
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.923e1

ClippingRankSum
type: SiteQuality
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QD
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DP
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BaseQRankSum
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SIO_000300: -3.038e0

MQRankSum
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SIO_000300: -5.8e-2

FS
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SIO_000300: 4.464e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e0

VQSLOD
type: SiteQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.499970000599988e-5
allele num: 66668
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
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MQ
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BaseQRankSum
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SIO_000300: 5.19e0

ReadPosRankSum
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SIO_000300: -1.09e-1

ClippingRankSum
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MQRankSum
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InbreedingCoeff
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DP
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SIO_000300: 3.524867e6

FS
type: SiteQuality
SIO_000300: 6.025e0

QD
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SIO_000300: 1.383e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 2
allele frequency: 2.312673450508788e-4
allele num: 8648
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66666
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MQRankSum
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SIO_000300: 1.28e0

ReadPosRankSum
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FS
type: SiteQuality
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MQ
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VQSLOD
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BaseQRankSum
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SIO_000300: -3.726e0

DP
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InbreedingCoeff
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SIO_000300: -1.0e-4

ClippingRankSum
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QD
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SIO_000300: 1.233e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.156604210039325e-4
allele num: 8646
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66666
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.52e-1

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 9.08e-1

InbreedingCoeff
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SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 3.524775e6

MQRankSum
type: SiteQuality
SIO_000300: 1.44e-1

FS
type: SiteQuality
SIO_000300: 3.317e0

ReadPosRankSum
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SIO_000300: 1.61e0

MQ
type: SiteQuality
SIO_000300: 5.982e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.63e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66664
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06060606060606e-5
allele num: 16500
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
SIO_000300: -8.400000000000001e-2

FS
type: SiteQuality
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DP
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
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MQ
type: SiteQuality
SIO_000300: 5.846e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.500060002400096e-5
allele num: 66664
num of homozygotes: 0

FS
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InbreedingCoeff
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QD
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ReadPosRankSum
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MQ
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VQSLOD
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 9.645061728395061e-5
allele num: 10368
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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Latino
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South Asian
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FS
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MQRankSum
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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MQ
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InbreedingCoeff
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BaseQRankSum
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QD
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DP
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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num of homozygotes: 0

Latino
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South Asian
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East Asian
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European (Non-Finnish)
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QD
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
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MQ
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VQSLOD
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FS
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DP
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InbreedingCoeff
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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num of homozygotes: 0

South Asian
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Other
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Latino
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allele frequency: 0.0e0
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East Asian
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European (Finnish)
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African
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ReadPosRankSum
type: SiteQuality
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VQSLOD
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MQRankSum
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DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 7.95e-1

FS
type: SiteQuality
SIO_000300: 5.03e-1

InbreedingCoeff
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SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -2.541e0

QD
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MQ
type: SiteQuality
SIO_000300: 5.991e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

South Asian
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allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10360
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500420117632937e-5
allele num: 66648
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.61e0

ReadPosRankSum
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InbreedingCoeff
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SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.974e1

VQSLOD
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SIO_000300: 7.01e-1

BaseQRankSum
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DP
type: SiteQuality
SIO_000300: 3.524016e6

MQRankSum
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SIO_000300: 5.53e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500420117632937e-5
allele num: 66648
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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SIO_000300: 1.0e-4

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.858e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.1e-1

ReadPosRankSum
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SIO_000300: 7.38e-1

DP
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SIO_000300: 3.524022e6

FS
type: SiteQuality
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QD
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ClippingRankSum
type: SiteQuality
SIO_000300: -7.06e-1

VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.654373431164318e-5
allele num: 10358
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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DP
type: SiteQuality
SIO_000300: 3.524007e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.72e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.41e0

QD
type: SiteQuality
SIO_000300: 1.673e1

VQSLOD
type: SiteQuality
SIO_000300: 1.26e0

FS
type: SiteQuality
SIO_000300: 2.796e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.9e-2

GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele num: 10358
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.156336725254394e-4
allele num: 8648
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.500510173458976e-5
allele num: 66644
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.61e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.8e-2

InbreedingCoeff
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 9.63e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.76e-1

ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.944e1

DP
type: SiteQuality
SIO_000300: 3.524153e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66614
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
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Latino
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allele frequency: 0.0e0
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African
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Other
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East Asian
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South Asian
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VQSLOD
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MQRankSum
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DP
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MQ
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BaseQRankSum
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InbreedingCoeff
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QD
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FS
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ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
allele num: 11556
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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European (Non-Finnish)
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allele num: 66612
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South Asian
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African
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MQ
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BaseQRankSum
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FS
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InbreedingCoeff
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ReadPosRankSum
type: SiteQuality
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DP
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QD
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MQRankSum
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VQSLOD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 4
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allele num: 10348
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Latino
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East Asian
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European (Non-Finnish)
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allele num: 66610
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European (Finnish)
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South Asian
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Other
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QD
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
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MQ
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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DP
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BaseQRankSum
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InbreedingCoeff
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