20-30521689-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30521689
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 30521689
    reference: chr 20
allele count: 1
allele frequency: 1.021471327299843e-5
allele num: 97898
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000308980
  ensembl transcript: ENST00000310998
  gene symbol: TTLL9
  hgvsc: ENST00000310998.4:c.702+28G>A
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365086
  ensembl transcript: ENST00000375921
  gene symbol: TTLL9
  hgvsc: ENST00000375921.2:c.633+28G>A
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365100
  ensembl transcript: ENST00000375934
  gene symbol: TTLL9
  hgvsc: ENST00000375934.4:c.710+28G>A
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365105
  ensembl transcript: ENST00000375938
  gene symbol: TTLL9
  hgvsc: ENST00000375938.4:c.807+28G>A
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365088
  ensembl transcript: ENST00000375922
  gene symbol: TTLL9
  hgvsc: ENST00000375922.4:c.633+28G>A
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000442515
  ensembl transcript: ENST00000535842
  gene symbol: TTLL9
  hgvsc: ENST00000535842.1:c.807+28G>A
  variant of: http://identifiers.org/hgnc/16118
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9540
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4346
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28770
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1787
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6050
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6076
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4626
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1771
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 534
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30936
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1590
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1531
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5076
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

20-30521694-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30521694
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 30521694
    reference: chr 20
allele count: 1
allele frequency: 1.059546514091969e-5
allele num: 94380
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365088
  ensembl transcript: ENST00000375922
  gene symbol: TTLL9
  hgvsc: ENST00000375922.4:c.633+33C>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365105
  ensembl transcript: ENST00000375938
  gene symbol: TTLL9
  hgvsc: ENST00000375938.4:c.807+33C>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000442515
  ensembl transcript: ENST00000535842
  gene symbol: TTLL9
  hgvsc: ENST00000535842.1:c.807+33C>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000308980
  ensembl transcript: ENST00000310998
  gene symbol: TTLL9
  hgvsc: ENST00000310998.4:c.702+33C>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365100
  ensembl transcript: ENST00000375934
  gene symbol: TTLL9
  hgvsc: ENST00000375934.4:c.710+33C>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365086
  ensembl transcript: ENST00000375921
  gene symbol: TTLL9
  hgvsc: ENST00000375921.2:c.633+33C>T
  variant of: http://identifiers.org/hgnc/16118
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2411
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2051
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10504
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29914
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7883
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3755
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2085
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 463
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5601
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31346
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 280
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3051
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 1590
  bin: 9.75e1
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genotype quality: GenotypeQuality
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  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 319
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
population: African
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

20-30521695-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30521695
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 30521695
    reference: chr 20
allele count: 4
allele frequency: 4.267941358485734e-5
allele num: 93722
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000442515
  ensembl transcript: ENST00000535842
  gene symbol: TTLL9
  hgvsc: ENST00000535842.1:c.807+34A>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365100
  ensembl transcript: ENST00000375934
  gene symbol: TTLL9
  hgvsc: ENST00000375934.4:c.710+34A>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365086
  ensembl transcript: ENST00000375921
  gene symbol: TTLL9
  hgvsc: ENST00000375921.2:c.633+34A>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365088
  ensembl transcript: ENST00000375922
  gene symbol: TTLL9
  hgvsc: ENST00000375922.4:c.633+34A>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365105
  ensembl transcript: ENST00000375938
  gene symbol: TTLL9
  hgvsc: ENST00000375938.4:c.807+34A>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000308980
  ensembl transcript: ENST00000310998
  gene symbol: TTLL9
  hgvsc: ENST00000310998.4:c.702+34A>T
  variant of: http://identifiers.org/hgnc/16118
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2117
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 29817
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8292
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3325
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2216
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10848
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 9.75e1
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genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1171
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 77
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genotype quality: GenotypeQuality
  all individuals: 4830
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQ

20-30521701-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30521701
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 30521701
    reference: chr 20
allele count: 3
allele frequency: 3.490076549012309e-5
allele num: 85958
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365086
  ensembl transcript: ENST00000375921
  gene symbol: TTLL9
  hgvsc: ENST00000375921.2:c.633+40C>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365088
  ensembl transcript: ENST00000375922
  gene symbol: TTLL9
  hgvsc: ENST00000375922.4:c.633+40C>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365105
  ensembl transcript: ENST00000375938
  gene symbol: TTLL9
  hgvsc: ENST00000375938.4:c.807+40C>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365100
  ensembl transcript: ENST00000375934
  gene symbol: TTLL9
  hgvsc: ENST00000375934.4:c.710+40C>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000308980
  ensembl transcript: ENST00000310998
  gene symbol: TTLL9
  hgvsc: ENST00000310998.4:c.702+40C>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000442515
  ensembl transcript: ENST00000535842
  gene symbol: TTLL9
  hgvsc: ENST00000535842.1:c.807+40C>T
  variant of: http://identifiers.org/hgnc/16118
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13793
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1903
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27674
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 2
genotype depth: GenotypeDepth
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  bin: 8.25e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6024
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2698
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genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1591
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 5754
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1870
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28638
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQ
site quality: QD

20-30521705-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30521705
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 30521705
    reference: chr 20
allele count: 1
allele frequency: 1.315512523679225e-5
allele num: 76016
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000308980
  ensembl transcript: ENST00000310998
  gene symbol: TTLL9
  hgvsc: ENST00000310998.4:c.702+44C>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365100
  ensembl transcript: ENST00000375934
  gene symbol: TTLL9
  hgvsc: ENST00000375934.4:c.710+44C>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000442515
  ensembl transcript: ENST00000535842
  gene symbol: TTLL9
  hgvsc: ENST00000535842.1:c.807+44C>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365105
  ensembl transcript: ENST00000375938
  gene symbol: TTLL9
  hgvsc: ENST00000375938.4:c.807+44C>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365086
  ensembl transcript: ENST00000375921
  gene symbol: TTLL9
  hgvsc: ENST00000375921.2:c.633+44C>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365088
  ensembl transcript: ENST00000375922
  gene symbol: TTLL9
  hgvsc: ENST00000375922.4:c.633+44C>T
  variant of: http://identifiers.org/hgnc/16118
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2992
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9004
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17994
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1186
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24118
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1989
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4207
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1589
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2986
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 499
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 726
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6829
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 849
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 835
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4261
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5326
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5932
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: East Asian
population: African
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff

20-30521706-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30521706
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 30521706
    reference: chr 20
allele count: 1
allele frequency: 1.390781897582821e-5
allele num: 71902
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365105
  ensembl transcript: ENST00000375938
  gene symbol: TTLL9
  hgvsc: ENST00000375938.4:c.807+45G>A
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000308980
  ensembl transcript: ENST00000310998
  gene symbol: TTLL9
  hgvsc: ENST00000310998.4:c.702+45G>A
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365086
  ensembl transcript: ENST00000375921
  gene symbol: TTLL9
  hgvsc: ENST00000375921.2:c.633+45G>A
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365100
  ensembl transcript: ENST00000375934
  gene symbol: TTLL9
  hgvsc: ENST00000375934.4:c.710+45G>A
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000442515
  ensembl transcript: ENST00000535842
  gene symbol: TTLL9
  hgvsc: ENST00000535842.1:c.807+45G>A
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365088
  ensembl transcript: ENST00000375922
  gene symbol: TTLL9
  hgvsc: ENST00000375922.4:c.633+45G>A
  variant of: http://identifiers.org/hgnc/16118
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3051
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8674
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2116
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19388
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23004
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21100
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 937
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5203
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1589
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2977
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 898
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 7021
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5873
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5872
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum

20-30521710-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30521710
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 30521710
    reference: chr 20
allele count: 4
allele frequency: 6.406765544414902e-5
allele num: 62434
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365105
  ensembl transcript: ENST00000375938
  gene symbol: TTLL9
  hgvsc: ENST00000375938.4:c.807+49G>C
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365088
  ensembl transcript: ENST00000375922
  gene symbol: TTLL9
  hgvsc: ENST00000375922.4:c.633+49G>C
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365100
  ensembl transcript: ENST00000375934
  gene symbol: TTLL9
  hgvsc: ENST00000375934.4:c.710+49G>C
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000308980
  ensembl transcript: ENST00000310998
  gene symbol: TTLL9
  hgvsc: ENST00000310998.4:c.702+49G>C
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000442515
  ensembl transcript: ENST00000535842
  gene symbol: TTLL9
  hgvsc: ENST00000535842.1:c.807+49G>C
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365086
  ensembl transcript: ENST00000375921
  gene symbol: TTLL9
  hgvsc: ENST00000375921.2:c.633+49G>C
  variant of: http://identifiers.org/hgnc/16118
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8049
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21421
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3228
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2232
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21385
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1044
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1590
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 6806
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 564
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genotype quality: GenotypeQuality
  all individuals: 1142
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 425
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2986
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11259
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: South Asian
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS

20-30521713-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30521713
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 30521713
    reference: chr 20
allele count: 2
allele frequency: 3.268294277216721e-5
allele num: 61194
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365105
  ensembl transcript: ENST00000375938
  gene symbol: TTLL9
  hgvsc: ENST00000375938.4:c.807+52C>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000442515
  ensembl transcript: ENST00000535842
  gene symbol: TTLL9
  hgvsc: ENST00000535842.1:c.807+52C>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000308980
  ensembl transcript: ENST00000310998
  gene symbol: TTLL9
  hgvsc: ENST00000310998.4:c.702+52C>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365088
  ensembl transcript: ENST00000375922
  gene symbol: TTLL9
  hgvsc: ENST00000375922.4:c.633+52C>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365086
  ensembl transcript: ENST00000375921
  gene symbol: TTLL9
  hgvsc: ENST00000375921.2:c.633+52C>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365100
  ensembl transcript: ENST00000375934
  gene symbol: TTLL9
  hgvsc: ENST00000375934.4:c.710+52C>T
  variant of: http://identifiers.org/hgnc/16118
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21403
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7949
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genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3232
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2232
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4917
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 706
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 573
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2971
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1482
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5731
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1042
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum

20-30522081-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30522081
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 30522081
    reference: chr 20
allele count: 1
allele frequency: 9.40910801656003e-5
allele num: 10628
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000308980
  ensembl transcript: ENST00000310998
  gene symbol: TTLL9
  hgvsc: ENST00000310998.4:c.703-414G>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365100
  ensembl transcript: ENST00000375934
  gene symbol: TTLL9
  hgvsc: ENST00000375934.4:c.711-414G>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365088
  ensembl transcript: ENST00000375922
  gene symbol: TTLL9
  hgvsc: ENST00000375922.4:c.634-414G>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000442515
  ensembl transcript: ENST00000535842
  gene symbol: TTLL9
  hgvsc: ENST00000535842.1:c.808-414G>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365105
  ensembl transcript: ENST00000375938
  gene symbol: TTLL9
  hgvsc: ENST00000375938.4:c.808-414G>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365086
  ensembl transcript: ENST00000375921
  gene symbol: TTLL9
  hgvsc: ENST00000375921.2:c.633+420G>T
  variant of: http://identifiers.org/hgnc/16118
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1344
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3830
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2497
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 519
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum

20-30522097-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30522097
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 30522097
    reference: chr 20
allele count: 1
allele frequency: 9.366804046459348e-5
allele num: 10676
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000442515
  ensembl transcript: ENST00000535842
  gene symbol: TTLL9
  hgvsc: ENST00000535842.1:c.808-398C>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365105
  ensembl transcript: ENST00000375938
  gene symbol: TTLL9
  hgvsc: ENST00000375938.4:c.808-398C>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365100
  ensembl transcript: ENST00000375934
  gene symbol: TTLL9
  hgvsc: ENST00000375934.4:c.711-398C>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000308980
  ensembl transcript: ENST00000310998
  gene symbol: TTLL9
  hgvsc: ENST00000310998.4:c.703-398C>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365088
  ensembl transcript: ENST00000375922
  gene symbol: TTLL9
  hgvsc: ENST00000375922.4:c.634-398C>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365086
  ensembl transcript: ENST00000375921
  gene symbol: TTLL9
  hgvsc: ENST00000375921.2:c.633+436C>T
  variant of: http://identifiers.org/hgnc/16118
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3653
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1782
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 847
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 434
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genotype quality: GenotypeQuality
  all individuals: 38
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 2787
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 837
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum

20-30522119-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30522119
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 30522119
    reference: chr 20
allele count: 27
allele frequency: 2.512095273539263e-3
allele num: 10748
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365100
  ensembl transcript: ENST00000375934
  gene symbol: TTLL9
  hgvsc: ENST00000375934.4:c.711-376C>G
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365105
  ensembl transcript: ENST00000375938
  gene symbol: TTLL9
  hgvsc: ENST00000375938.4:c.808-376C>G
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365086
  ensembl transcript: ENST00000375921
  gene symbol: TTLL9
  hgvsc: ENST00000375921.2:c.633+458C>G
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000308980
  ensembl transcript: ENST00000310998
  gene symbol: TTLL9
  hgvsc: ENST00000310998.4:c.703-376C>G
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365088
  ensembl transcript: ENST00000375922
  gene symbol: TTLL9
  hgvsc: ENST00000375922.4:c.634-376C>G
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000442515
  ensembl transcript: ENST00000535842
  gene symbol: TTLL9
  hgvsc: ENST00000535842.1:c.808-376C>G
  variant of: http://identifiers.org/hgnc/16118
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 310
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  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3599
  bin: 2.5e0
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
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  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 889
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 547
  bin: 9.75e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 430
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2
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genotype quality: GenotypeQuality
  all individuals: 6
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genotype quality: GenotypeQuality
  all individuals: 1925
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 616
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3164
  bin: 7.5e0
  variant carriers: 6
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: DP

20-30522156-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30522156
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 30522156
    reference: chr 20
allele count: 1
allele frequency: 9.278159213212098e-5
allele num: 10778
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000442515
  ensembl transcript: ENST00000535842
  gene symbol: TTLL9
  hgvsc: ENST00000535842.1:c.808-339A>G
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365086
  ensembl transcript: ENST00000375921
  gene symbol: TTLL9
  hgvsc: ENST00000375921.2:c.633+495A>G
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365105
  ensembl transcript: ENST00000375938
  gene symbol: TTLL9
  hgvsc: ENST00000375938.4:c.808-339A>G
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000308980
  ensembl transcript: ENST00000310998
  gene symbol: TTLL9
  hgvsc: ENST00000310998.4:c.703-339A>G
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365088
  ensembl transcript: ENST00000375922
  gene symbol: TTLL9
  hgvsc: ENST00000375922.4:c.634-339A>G
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365100
  ensembl transcript: ENST00000375934
  gene symbol: TTLL9
  hgvsc: ENST00000375934.4:c.711-339A>G
  variant of: http://identifiers.org/hgnc/16118
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3645
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
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genotype depth: GenotypeDepth
  all individuals: 1645
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 0
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 891
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 621
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1957
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3250
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

20-30522181-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30522181
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 30522181
    reference: chr 20
allele count: 5
allele frequency: 4.640801930573603e-4
allele num: 10774
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365100
  ensembl transcript: ENST00000375934
  gene symbol: TTLL9
  hgvsc: ENST00000375934.4:c.711-314G>A
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000442515
  ensembl transcript: ENST00000535842
  gene symbol: TTLL9
  hgvsc: ENST00000535842.1:c.808-314G>A
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365088
  ensembl transcript: ENST00000375922
  gene symbol: TTLL9
  hgvsc: ENST00000375922.4:c.634-314G>A
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000308980
  ensembl transcript: ENST00000310998
  gene symbol: TTLL9
  hgvsc: ENST00000310998.4:c.703-314G>A
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365105
  ensembl transcript: ENST00000375938
  gene symbol: TTLL9
  hgvsc: ENST00000375938.4:c.808-314G>A
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365086
  ensembl transcript: ENST00000375921
  gene symbol: TTLL9
  hgvsc: ENST00000375921.2:c.633+520G>A
  variant of: http://identifiers.org/hgnc/16118
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3926
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 889
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 451
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 432
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3513
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff

20-30522195-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30522195
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 30522195
    reference: chr 20
allele count: 4
allele frequency: 3.714020427112349e-4
allele num: 10770
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365105
  ensembl transcript: ENST00000375938
  gene symbol: TTLL9
  hgvsc: ENST00000375938.4:c.808-300C>G
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365088
  ensembl transcript: ENST00000375922
  gene symbol: TTLL9
  hgvsc: ENST00000375922.4:c.634-300C>G
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000308980
  ensembl transcript: ENST00000310998
  gene symbol: TTLL9
  hgvsc: ENST00000310998.4:c.703-300C>G
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365100
  ensembl transcript: ENST00000375934
  gene symbol: TTLL9
  hgvsc: ENST00000375934.4:c.711-300C>G
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000442515
  ensembl transcript: ENST00000535842
  gene symbol: TTLL9
  hgvsc: ENST00000535842.1:c.808-300C>G
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365086
  ensembl transcript: ENST00000375921
  gene symbol: TTLL9
  hgvsc: ENST00000375921.2:c.633+534C>G
  variant of: http://identifiers.org/hgnc/16118
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1643
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4174
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3798
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 533
  bin: 9.75e1
  variant carriers: 4
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff

20-30522202-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30522202
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 30522202
    reference: chr 20
allele count: 7
allele frequency: 6.499535747446611e-4
allele num: 10770
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000308980
  ensembl transcript: ENST00000310998
  gene symbol: TTLL9
  hgvsc: ENST00000310998.4:c.703-293T>G
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365105
  ensembl transcript: ENST00000375938
  gene symbol: TTLL9
  hgvsc: ENST00000375938.4:c.808-293T>G
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365088
  ensembl transcript: ENST00000375922
  gene symbol: TTLL9
  hgvsc: ENST00000375922.4:c.634-293T>G
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365086
  ensembl transcript: ENST00000375921
  gene symbol: TTLL9
  hgvsc: ENST00000375921.2:c.633+541T>G
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365100
  ensembl transcript: ENST00000375934
  gene symbol: TTLL9
  hgvsc: ENST00000375934.4:c.711-293T>G
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000442515
  ensembl transcript: ENST00000535842
  gene symbol: TTLL9
  hgvsc: ENST00000535842.1:c.808-293T>G
  variant of: http://identifiers.org/hgnc/16118
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4288
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1213
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1640
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 461
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3871
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 616
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1954
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 891
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff

20-30522217-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30522217
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 30522217
    reference: chr 20
allele count: 2
allele frequency: 1.856665428889714e-4
allele num: 10772
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365088
  ensembl transcript: ENST00000375922
  gene symbol: TTLL9
  hgvsc: ENST00000375922.4:c.634-278T>C
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365105
  ensembl transcript: ENST00000375938
  gene symbol: TTLL9
  hgvsc: ENST00000375938.4:c.808-278T>C
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000308980
  ensembl transcript: ENST00000310998
  gene symbol: TTLL9
  hgvsc: ENST00000310998.4:c.703-278T>C
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365086
  ensembl transcript: ENST00000375921
  gene symbol: TTLL9
  hgvsc: ENST00000375921.2:c.633+556T>C
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000442515
  ensembl transcript: ENST00000535842
  gene symbol: TTLL9
  hgvsc: ENST00000535842.1:c.808-278T>C
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365100
  ensembl transcript: ENST00000375934
  gene symbol: TTLL9
  hgvsc: ENST00000375934.4:c.711-278T>C
  variant of: http://identifiers.org/hgnc/16118
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1637
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4701
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4123
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 584
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1943
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 461
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: Latino
reference allele: T
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: QD

20-30522220-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30522220
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 30522220
    reference: chr 20
allele count: 1
allele frequency: 9.286775631500742e-5
allele num: 10768
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365100
  ensembl transcript: ENST00000375934
  gene symbol: TTLL9
  hgvsc: ENST00000375934.4:c.711-275G>A
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365086
  ensembl transcript: ENST00000375921
  gene symbol: TTLL9
  hgvsc: ENST00000375921.2:c.633+559G>A
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365105
  ensembl transcript: ENST00000375938
  gene symbol: TTLL9
  hgvsc: ENST00000375938.4:c.808-275G>A
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365088
  ensembl transcript: ENST00000375922
  gene symbol: TTLL9
  hgvsc: ENST00000375922.4:c.634-275G>A
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000308980
  ensembl transcript: ENST00000310998
  gene symbol: TTLL9
  hgvsc: ENST00000310998.4:c.703-275G>A
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000442515
  ensembl transcript: ENST00000535842
  gene symbol: TTLL9
  hgvsc: ENST00000535842.1:c.808-275G>A
  variant of: http://identifiers.org/hgnc/16118
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4843
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1637
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4285
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 891
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 532
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 461
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 447
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 616
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Latino
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

20-30522242-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30522242
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 30522242
    reference: chr 20
allele count: 2
allele frequency: 1.858045336306206e-4
allele num: 10764
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365100
  ensembl transcript: ENST00000375934
  gene symbol: TTLL9
  hgvsc: ENST00000375934.4:c.711-253C>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365086
  ensembl transcript: ENST00000375921
  gene symbol: TTLL9
  hgvsc: ENST00000375921.2:c.633+581C>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000442515
  ensembl transcript: ENST00000535842
  gene symbol: TTLL9
  hgvsc: ENST00000535842.1:c.808-253C>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365088
  ensembl transcript: ENST00000375922
  gene symbol: TTLL9
  hgvsc: ENST00000375922.4:c.634-253C>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000308980
  ensembl transcript: ENST00000310998
  gene symbol: TTLL9
  hgvsc: ENST00000310998.4:c.703-253C>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365105
  ensembl transcript: ENST00000375938
  gene symbol: TTLL9
  hgvsc: ENST00000375938.4:c.808-253C>T
  variant of: http://identifiers.org/hgnc/16118
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5848
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4811
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1843
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 13
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
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genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
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genotype quality: GenotypeQuality
  all individuals: 1035
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 531
  bin: 9.75e1
  variant carriers: 2
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: Latino
population: East Asian
reference allele: C
site quality: QD
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/20-30522259-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30522259
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 30522259
    reference: chr 20
allele count: 1
allele frequency: 9.302325581395348e-5
allele num: 10750
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365105
  ensembl transcript: ENST00000375938
  gene symbol: TTLL9
  hgvsc: ENST00000375938.4:c.808-236C>A
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365086
  ensembl transcript: ENST00000375921
  gene symbol: TTLL9
  hgvsc: ENST00000375921.2:c.633+598C>A
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365088
  ensembl transcript: ENST00000375922
  gene symbol: TTLL9
  hgvsc: ENST00000375922.4:c.634-236C>A
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000442515
  ensembl transcript: ENST00000535842
  gene symbol: TTLL9
  hgvsc: ENST00000535842.1:c.808-236C>A
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365100
  ensembl transcript: ENST00000375934
  gene symbol: TTLL9
  hgvsc: ENST00000375934.4:c.711-236C>A
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000308980
  ensembl transcript: ENST00000310998
  gene symbol: TTLL9
  hgvsc: ENST00000310998.4:c.703-236C>A
  variant of: http://identifiers.org/hgnc/16118
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7191
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1518
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 66
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 808
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5360
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 80
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
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genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
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genotype quality: GenotypeQuality
  all individuals: 147
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 87
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1818
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum

20-30522260-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30522260
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 30522260
    reference: chr 20
allele count: 5
allele frequency: 4.650297619047619e-4
allele num: 10752
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365088
  ensembl transcript: ENST00000375922
  gene symbol: TTLL9
  hgvsc: ENST00000375922.4:c.634-235G>A
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000308980
  ensembl transcript: ENST00000310998
  gene symbol: TTLL9
  hgvsc: ENST00000310998.4:c.703-235G>A
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365105
  ensembl transcript: ENST00000375938
  gene symbol: TTLL9
  hgvsc: ENST00000375938.4:c.808-235G>A
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000442515
  ensembl transcript: ENST00000535842
  gene symbol: TTLL9
  hgvsc: ENST00000535842.1:c.808-235G>A
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365100
  ensembl transcript: ENST00000375934
  gene symbol: TTLL9
  hgvsc: ENST00000375934.4:c.711-235G>A
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365086
  ensembl transcript: ENST00000375921
  gene symbol: TTLL9
  hgvsc: ENST00000375921.2:c.633+599G>A
  variant of: http://identifiers.org/hgnc/16118
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1341
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1524
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7357
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5478
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 535
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1861
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 609
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

http://identifiers.org/exac.variant/20-30522444-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30522444
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 30522444
    reference: chr 20
allele count: 5
allele frequency: 7.912393973920749e-5
allele num: 63192
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365105
  ensembl transcript: ENST00000375938
  gene symbol: TTLL9
  hgvsc: ENST00000375938.4:c.808-51A>C
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365086
  ensembl transcript: ENST00000375921
  gene symbol: TTLL9
  hgvsc: ENST00000375921.2:c.633+783A>C
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365088
  ensembl transcript: ENST00000375922
  gene symbol: TTLL9
  hgvsc: ENST00000375922.4:c.634-51A>C
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000442515
  ensembl transcript: ENST00000535842
  gene symbol: TTLL9
  hgvsc: ENST00000535842.1:c.808-51A>C
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000308980
  ensembl transcript: ENST00000310998
  gene symbol: TTLL9
  hgvsc: ENST00000310998.4:c.703-51A>C
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365100
  ensembl transcript: ENST00000375934
  gene symbol: TTLL9
  hgvsc: ENST00000375934.4:c.711-51A>C
  variant of: http://identifiers.org/hgnc/16118
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19438
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21569
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2666
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8101
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6489
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8423
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2942
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3036
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6697
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 516
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1818
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1788
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4332
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5849
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1013
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2180
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
reference allele: A
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

20-30522453-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30522453
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 30522453
    reference: chr 20
allele count: 1
allele frequency: 1.565386180770796e-5
allele num: 63882
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000308980
  ensembl transcript: ENST00000310998
  gene symbol: TTLL9
  hgvsc: ENST00000310998.4:c.703-42C>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365088
  ensembl transcript: ENST00000375922
  gene symbol: TTLL9
  hgvsc: ENST00000375922.4:c.634-42C>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365086
  ensembl transcript: ENST00000375921
  gene symbol: TTLL9
  hgvsc: ENST00000375921.2:c.633+792C>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365100
  ensembl transcript: ENST00000375934
  gene symbol: TTLL9
  hgvsc: ENST00000375934.4:c.711-42C>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365105
  ensembl transcript: ENST00000375938
  gene symbol: TTLL9
  hgvsc: ENST00000375938.4:c.808-42C>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000442515
  ensembl transcript: ENST00000535842
  gene symbol: TTLL9
  hgvsc: ENST00000535842.1:c.808-42C>T
  variant of: http://identifiers.org/hgnc/16118
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21638
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5934
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6280
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4885
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19435
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5845
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3005
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8270
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2034
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 848
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 848
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17776
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4017
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: African
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

20-30522455-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30522455
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 30522455
    reference: chr 20
allele count: 3
allele frequency: 4.656360588563978e-5
allele num: 64428
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365105
  ensembl transcript: ENST00000375938
  gene symbol: TTLL9
  hgvsc: ENST00000375938.4:c.808-40A>G
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365088
  ensembl transcript: ENST00000375922
  gene symbol: TTLL9
  hgvsc: ENST00000375922.4:c.634-40A>G
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000442515
  ensembl transcript: ENST00000535842
  gene symbol: TTLL9
  hgvsc: ENST00000535842.1:c.808-40A>G
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365086
  ensembl transcript: ENST00000375921
  gene symbol: TTLL9
  hgvsc: ENST00000375921.2:c.633+794A>G
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000308980
  ensembl transcript: ENST00000310998
  gene symbol: TTLL9
  hgvsc: ENST00000310998.4:c.703-40A>G
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365100
  ensembl transcript: ENST00000375934
  gene symbol: TTLL9
  hgvsc: ENST00000375934.4:c.711-40A>G
  variant of: http://identifiers.org/hgnc/16118
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5633
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21851
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5464
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19260
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5952
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2104
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1897
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5830
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19092
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 875
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5613
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4446
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2026
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2105
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

20-30522462-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30522462
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 30522462
    reference: chr 20
allele count: 0
allele frequency: 0.0e0
allele num: 65766
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365105
  ensembl transcript: ENST00000375938
  gene symbol: TTLL9
  hgvsc: ENST00000375938.4:c.808-33G>C
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365086
  ensembl transcript: ENST00000375921
  gene symbol: TTLL9
  hgvsc: ENST00000375921.2:c.633+801G>C
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365088
  ensembl transcript: ENST00000375922
  gene symbol: TTLL9
  hgvsc: ENST00000375922.4:c.634-33G>C
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365100
  ensembl transcript: ENST00000375934
  gene symbol: TTLL9
  hgvsc: ENST00000375934.4:c.711-33G>C
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000308980
  ensembl transcript: ENST00000310998
  gene symbol: TTLL9
  hgvsc: ENST00000310998.4:c.703-33G>C
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000442515
  ensembl transcript: ENST00000535842
  gene symbol: TTLL9
  hgvsc: ENST00000535842.1:c.808-33G>C
  variant of: http://identifiers.org/hgnc/16118
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 4621
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1328
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8967
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18049
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22123
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4174
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5701
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1326
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4856
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1055
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1440
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4059
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 523
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1459
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7869
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
population: African
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

20-30522463-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30522463
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 30522463
    reference: chr 20
allele count: 0
allele frequency: 0.0e0
allele num: 65962
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365100
  ensembl transcript: ENST00000375934
  gene symbol: TTLL9
  hgvsc: ENST00000375934.4:c.711-32C>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000308980
  ensembl transcript: ENST00000310998
  gene symbol: TTLL9
  hgvsc: ENST00000310998.4:c.703-32C>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365088
  ensembl transcript: ENST00000375922
  gene symbol: TTLL9
  hgvsc: ENST00000375922.4:c.634-32C>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000442515
  ensembl transcript: ENST00000535842
  gene symbol: TTLL9
  hgvsc: ENST00000535842.1:c.808-32C>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365105
  ensembl transcript: ENST00000375938
  gene symbol: TTLL9
  hgvsc: ENST00000375938.4:c.808-32C>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365086
  ensembl transcript: ENST00000375921
  gene symbol: TTLL9
  hgvsc: ENST00000375921.2:c.633+802C>T
  variant of: http://identifiers.org/hgnc/16118
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 22077
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9400
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4064
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17841
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4474
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1082
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1374
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1307
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20518
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4709
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 554
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5665
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8120
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: QD

20-30522465-CCTCTCTCG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30522465
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 30522457
    reference: chr 20
allele count: 1
allele frequency: 1.496289202777113e-5
allele num: 66832
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000308980
  ensembl transcript: ENST00000310998
  gene symbol: TTLL9
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000442515
  ensembl transcript: ENST00000535842
  gene symbol: TTLL9
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365105
  ensembl transcript: ENST00000375938
  gene symbol: TTLL9
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365086
  ensembl transcript: ENST00000375921
  gene symbol: TTLL9
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365100
  ensembl transcript: ENST00000375934
  gene symbol: TTLL9
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365088
  ensembl transcript: ENST00000375922
  gene symbol: TTLL9
  variant of: http://identifiers.org/hgnc/16118
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3718
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10589
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4111
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1545
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17188
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22086
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7502
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1273
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8684
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1172
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4438
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1411
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3743
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 713
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20649
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: South Asian
reference allele: CCTCTCTCG
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: QD

20-30522467-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30522467
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 30522467
    reference: chr 20
allele count: 1
allele frequency: 1.470458488956857e-5
allele num: 68006
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365105
  ensembl transcript: ENST00000375938
  gene symbol: TTLL9
  hgvsc: ENST00000375938.4:c.808-28T>A
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365086
  ensembl transcript: ENST00000375921
  gene symbol: TTLL9
  hgvsc: ENST00000375921.2:c.633+806T>A
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365100
  ensembl transcript: ENST00000375934
  gene symbol: TTLL9
  hgvsc: ENST00000375934.4:c.711-28T>A
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365088
  ensembl transcript: ENST00000375922
  gene symbol: TTLL9
  hgvsc: ENST00000375922.4:c.634-28T>A
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000308980
  ensembl transcript: ENST00000310998
  gene symbol: TTLL9
  hgvsc: ENST00000310998.4:c.703-28T>A
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000442515
  ensembl transcript: ENST00000535842
  gene symbol: TTLL9
  hgvsc: ENST00000535842.1:c.808-28T>A
  variant of: http://identifiers.org/hgnc/16118
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16342
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3374
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12029
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1702
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22012
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3773
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 4070
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genotype quality: GenotypeQuality
  all individuals: 3501
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 962
  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 276
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1051
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genotype quality: GenotypeQuality
  all individuals: 954
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 493
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genotype quality: GenotypeQuality
  all individuals: 21139
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 399
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genotype quality: GenotypeQuality
  all individuals: 340
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1325
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

20-30522468-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30522468
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 30522468
    reference: chr 20
allele count: 1
allele frequency: 1.465072667604313e-5
allele num: 68256
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365105
  ensembl transcript: ENST00000375938
  gene symbol: TTLL9
  hgvsc: ENST00000375938.4:c.808-27C>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000442515
  ensembl transcript: ENST00000535842
  gene symbol: TTLL9
  hgvsc: ENST00000535842.1:c.808-27C>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365088
  ensembl transcript: ENST00000375922
  gene symbol: TTLL9
  hgvsc: ENST00000375922.4:c.634-27C>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000308980
  ensembl transcript: ENST00000310998
  gene symbol: TTLL9
  hgvsc: ENST00000310998.4:c.703-27C>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365086
  ensembl transcript: ENST00000375921
  gene symbol: TTLL9
  hgvsc: ENST00000375921.2:c.633+807C>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365100
  ensembl transcript: ENST00000375934
  gene symbol: TTLL9
  hgvsc: ENST00000375934.4:c.711-27C>T
  variant of: http://identifiers.org/hgnc/16118
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21952
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3245
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3637
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12706
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15895
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1787
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21063
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 977
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6957
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 928
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3438
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 518
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 458
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11313
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1080
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3867
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

20-30522472-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30522472
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 30522472
    reference: chr 20
allele count: 3
allele frequency: 4.264998578333807e-5
allele num: 70340
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000308980
  ensembl transcript: ENST00000310998
  gene symbol: TTLL9
  hgvsc: ENST00000310998.4:c.703-23C>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365100
  ensembl transcript: ENST00000375934
  gene symbol: TTLL9
  hgvsc: ENST00000375934.4:c.711-23C>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365105
  ensembl transcript: ENST00000375938
  gene symbol: TTLL9
  hgvsc: ENST00000375938.4:c.808-23C>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000442515
  ensembl transcript: ENST00000535842
  gene symbol: TTLL9
  hgvsc: ENST00000535842.1:c.808-23C>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365086
  ensembl transcript: ENST00000375921
  gene symbol: TTLL9
  hgvsc: ENST00000375921.2:c.633+811C>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365088
  ensembl transcript: ENST00000375922
  gene symbol: TTLL9
  hgvsc: ENST00000375922.4:c.634-23C>T
  variant of: http://identifiers.org/hgnc/16118
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21247
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2880
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2309
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13914
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3040
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15730
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 775
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 478
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 904
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 528
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3065
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6016
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 551
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1595
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20722
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3169
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 431
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: South Asian
population: East Asian
population: Latino
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

20-30522473-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30522473
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 30522473
    reference: chr 20
allele count: 1
allele frequency: 1.37438152831226e-5
allele num: 72760
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365086
  ensembl transcript: ENST00000375921
  gene symbol: TTLL9
  hgvsc: ENST00000375921.2:c.633+812G>A
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365088
  ensembl transcript: ENST00000375922
  gene symbol: TTLL9
  hgvsc: ENST00000375922.4:c.634-22G>A
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000442515
  ensembl transcript: ENST00000535842
  gene symbol: TTLL9
  hgvsc: ENST00000535842.1:c.808-22G>A
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365105
  ensembl transcript: ENST00000375938
  gene symbol: TTLL9
  hgvsc: ENST00000375938.4:c.808-22G>A
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000308980
  ensembl transcript: ENST00000310998
  gene symbol: TTLL9
  hgvsc: ENST00000310998.4:c.703-22G>A
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365100
  ensembl transcript: ENST00000375934
  gene symbol: TTLL9
  hgvsc: ENST00000375934.4:c.711-22G>A
  variant of: http://identifiers.org/hgnc/16118
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 12101
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2687
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2487
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18518
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2617
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20626
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 571
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2678
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4474
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20532
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2548
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 607
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 560
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5204
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17219
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ

20-30522474-ACCCGGCTGCCCGGGGCCCAGGGCTGCAAGTG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30522474
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 30522443
    reference: chr 20
allele count: 1
allele frequency: 1.351387875347982e-5
allele num: 73998
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: coding_sequence_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000308980
  ensembl transcript: ENST00000310998
  gene symbol: TTLL9
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: coding_sequence_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365100
  ensembl transcript: ENST00000375934
  gene symbol: TTLL9
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: coding_sequence_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365088
  ensembl transcript: ENST00000375922
  gene symbol: TTLL9
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365086
  ensembl transcript: ENST00000375921
  gene symbol: TTLL9
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  consequence: coding_sequence_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365105
  ensembl transcript: ENST00000375938
  gene symbol: TTLL9
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: coding_sequence_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000442515
  ensembl transcript: ENST00000535842
  gene symbol: TTLL9
  variant of: http://identifiers.org/hgnc/16118
canonical: true
consequence: splice acceptor
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 2476
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2392
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11450
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2842
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20362
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19505
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2259
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20356
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 647
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4913
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 607
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4323
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2515
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: ACCCGGCTGCCCGGGGCCCAGGGCTGCAAGTG
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

20-30522475-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30522475
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 30522475
    reference: chr 20
allele count: 1
allele frequency: 1.342281879194631e-5
allele num: 74500
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365105
  ensembl transcript: ENST00000375938
  gene symbol: TTLL9
  hgvsc: ENST00000375938.4:c.808-20C>G
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365088
  ensembl transcript: ENST00000375922
  gene symbol: TTLL9
  hgvsc: ENST00000375922.4:c.634-20C>G
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000442515
  ensembl transcript: ENST00000535842
  gene symbol: TTLL9
  hgvsc: ENST00000535842.1:c.808-20C>G
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365100
  ensembl transcript: ENST00000375934
  gene symbol: TTLL9
  hgvsc: ENST00000375934.4:c.711-20C>G
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365086
  ensembl transcript: ENST00000375921
  gene symbol: TTLL9
  hgvsc: ENST00000375921.2:c.633+814C>G
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000308980
  ensembl transcript: ENST00000310998
  gene symbol: TTLL9
  hgvsc: ENST00000310998.4:c.703-20C>G
  variant of: http://identifiers.org/hgnc/16118
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19866
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2382
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11204
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2461
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20055
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3003
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2447
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 553
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 687
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4800
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 754
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 841
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2387
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4278
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2259
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP

20-30522477-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30522477
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 30522477
    reference: chr 20
allele count: 1
allele frequency: 1.307018690367272e-5
allele num: 76510
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365088
  ensembl transcript: ENST00000375922
  gene symbol: TTLL9
  hgvsc: ENST00000375922.4:c.634-18C>G
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365100
  ensembl transcript: ENST00000375934
  gene symbol: TTLL9
  hgvsc: ENST00000375934.4:c.711-18C>G
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000308980
  ensembl transcript: ENST00000310998
  gene symbol: TTLL9
  hgvsc: ENST00000310998.4:c.703-18C>G
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365105
  ensembl transcript: ENST00000375938
  gene symbol: TTLL9
  hgvsc: ENST00000375938.4:c.808-18C>G
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365086
  ensembl transcript: ENST00000375921
  gene symbol: TTLL9
  hgvsc: ENST00000375921.2:c.633+816C>G
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000442515
  ensembl transcript: ENST00000535842
  gene symbol: TTLL9
  hgvsc: ENST00000535842.1:c.808-18C>G
  variant of: http://identifiers.org/hgnc/16118
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3471
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10316
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2141
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19094
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2545
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21264
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 791
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19132
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3968
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4318
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2274
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 696
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 692
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2409
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2190
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19361
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

20-30522477-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30522477
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 30522477
    reference: chr 20
allele count: 7
allele frequency: 9.149130832570906e-5
allele num: 76510
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000308980
  ensembl transcript: ENST00000310998
  gene symbol: TTLL9
  hgvsc: ENST00000310998.4:c.703-18C>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365105
  ensembl transcript: ENST00000375938
  gene symbol: TTLL9
  hgvsc: ENST00000375938.4:c.808-18C>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365088
  ensembl transcript: ENST00000375922
  gene symbol: TTLL9
  hgvsc: ENST00000375922.4:c.634-18C>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365100
  ensembl transcript: ENST00000375934
  gene symbol: TTLL9
  hgvsc: ENST00000375934.4:c.711-18C>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365086
  ensembl transcript: ENST00000375921
  gene symbol: TTLL9
  hgvsc: ENST00000375921.2:c.633+816C>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000442515
  ensembl transcript: ENST00000535842
  gene symbol: TTLL9
  hgvsc: ENST00000535842.1:c.808-18C>T
  variant of: http://identifiers.org/hgnc/16118
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3471
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2141
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19094
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21264
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2545
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10316
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 551
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3968
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19132
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2409
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4318
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2190
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 398
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2274
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 692
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum

20-30522478-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30522478
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 30522478
    reference: chr 20
allele count: 2
allele frequency: 2.536461636017755e-5
allele num: 78850
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365100
  ensembl transcript: ENST00000375934
  gene symbol: TTLL9
  hgvsc: ENST00000375934.4:c.711-17G>A
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000308980
  ensembl transcript: ENST00000310998
  gene symbol: TTLL9
  hgvsc: ENST00000310998.4:c.703-17G>A
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000442515
  ensembl transcript: ENST00000535842
  gene symbol: TTLL9
  hgvsc: ENST00000535842.1:c.808-17G>A
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365105
  ensembl transcript: ENST00000375938
  gene symbol: TTLL9
  hgvsc: ENST00000375938.4:c.808-17G>A
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365088
  ensembl transcript: ENST00000375922
  gene symbol: TTLL9
  hgvsc: ENST00000375922.4:c.634-17G>A
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365086
  ensembl transcript: ENST00000375921
  gene symbol: TTLL9
  hgvsc: ENST00000375921.2:c.633+817G>A
  variant of: http://identifiers.org/hgnc/16118
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1940
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18449
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3729
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9598
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22518
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2510
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 665
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3972
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3772
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 436
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2682
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 769
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genotype quality: GenotypeQuality
  all individuals: 791
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20468
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 601
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 440
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genotype quality: GenotypeQuality
  all individuals: 2040
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 9.75e1
  variant carriers: 2
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

20-30522482-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30522482
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 30522482
    reference: chr 20
allele count: 1
allele frequency: 1.19548584544759e-5
allele num: 83648
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365100
  ensembl transcript: ENST00000375934
  gene symbol: TTLL9
  hgvsc: ENST00000375934.4:c.711-13G>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365105
  ensembl transcript: ENST00000375938
  gene symbol: TTLL9
  hgvsc: ENST00000375938.4:c.808-13G>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000442515
  ensembl transcript: ENST00000535842
  gene symbol: TTLL9
  hgvsc: ENST00000535842.1:c.808-13G>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365088
  ensembl transcript: ENST00000375922
  gene symbol: TTLL9
  hgvsc: ENST00000375922.4:c.634-13G>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000308980
  ensembl transcript: ENST00000310998
  gene symbol: TTLL9
  hgvsc: ENST00000310998.4:c.703-13G>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365086
  ensembl transcript: ENST00000375921
  gene symbol: TTLL9
  hgvsc: ENST00000375921.2:c.633+821G>T
  variant of: http://identifiers.org/hgnc/16118
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7919
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4401
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16557
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1336
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25713
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2369
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3182
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 503
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 764
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1650
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16840
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 584
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 617
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3164
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23875
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 952
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

20-30522485-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30522485
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 30522485
    reference: chr 20
allele count: 10
allele frequency: 1.145711601475676e-4
allele num: 87282
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000308980
  ensembl transcript: ENST00000310998
  gene symbol: TTLL9
  hgvsc: ENST00000310998.4:c.703-10C>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365088
  ensembl transcript: ENST00000375922
  gene symbol: TTLL9
  hgvsc: ENST00000375922.4:c.634-10C>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365105
  ensembl transcript: ENST00000375938
  gene symbol: TTLL9
  hgvsc: ENST00000375938.4:c.808-10C>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365100
  ensembl transcript: ENST00000375934
  gene symbol: TTLL9
  hgvsc: ENST00000375934.4:c.711-10C>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365086
  ensembl transcript: ENST00000375921
  gene symbol: TTLL9
  hgvsc: ENST00000375921.2:c.633+824C>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000442515
  ensembl transcript: ENST00000535842
  gene symbol: TTLL9
  hgvsc: ENST00000535842.1:c.808-10C>T
  variant of: http://identifiers.org/hgnc/16118
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14855
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27881
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  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5088
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6835
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2258
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genotype depth: GenotypeDepth
  all individuals: 1634
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  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 106
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 1432
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 578
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genotype quality: GenotypeQuality
  all individuals: 2737
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genotype quality: GenotypeQuality
  all individuals: 447
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genotype quality: GenotypeQuality
  all individuals: 3329
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 271
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 772
  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 335
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 9.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 26131
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genotype quality: GenotypeQuality
  all individuals: 666
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genotype quality: GenotypeQuality
  all individuals: 653
  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 2742
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP

20-30522488-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30522488
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 30522488
    reference: chr 20
allele count: 1
allele frequency: 1.077911438796188e-5
allele num: 92772
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000442515
  ensembl transcript: ENST00000535842
  gene symbol: TTLL9
  hgvsc: ENST00000535842.1:c.808-7G>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365086
  ensembl transcript: ENST00000375921
  gene symbol: TTLL9
  hgvsc: ENST00000375921.2:c.633+827G>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365088
  ensembl transcript: ENST00000375922
  gene symbol: TTLL9
  hgvsc: ENST00000375922.4:c.634-7G>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365100
  ensembl transcript: ENST00000375934
  gene symbol: TTLL9
  hgvsc: ENST00000375934.4:c.711-7G>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365105
  ensembl transcript: ENST00000375938
  gene symbol: TTLL9
  hgvsc: ENST00000375938.4:c.808-7G>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000308980
  ensembl transcript: ENST00000310998
  gene symbol: TTLL9
  hgvsc: ENST00000310998.4:c.703-7G>T
  variant of: http://identifiers.org/hgnc/16118
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2096
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30618
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
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genotype depth: GenotypeDepth
  all individuals: 1891
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 256
  bin: 1.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1207
  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 348
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genotype quality: GenotypeQuality
  all individuals: 834
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 29294
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genotype quality: GenotypeQuality
  all individuals: 522
  bin: 4.25e1
  variant carriers: 0
hgvs: c.808-7G>T
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum

20-30522489-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30522489
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 30522489
    reference: chr 20
allele count: 2
allele frequency: 2.132832828562897e-5
allele num: 93772
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365100
  ensembl transcript: ENST00000375934
  gene symbol: TTLL9
  hgvsc: ENST00000375934.4:c.711-6G>A
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365086
  ensembl transcript: ENST00000375921
  gene symbol: TTLL9
  hgvsc: ENST00000375921.2:c.633+828G>A
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365088
  ensembl transcript: ENST00000375922
  gene symbol: TTLL9
  hgvsc: ENST00000375922.4:c.634-6G>A
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000442515
  ensembl transcript: ENST00000535842
  gene symbol: TTLL9
  hgvsc: ENST00000535842.1:c.808-6G>A
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365105
  ensembl transcript: ENST00000375938
  gene symbol: TTLL9
  hgvsc: ENST00000375938.4:c.808-6G>A
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000308980
  ensembl transcript: ENST00000310998
  gene symbol: TTLL9
  hgvsc: ENST00000310998.4:c.703-6G>A
  variant of: http://identifiers.org/hgnc/16118
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5980
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2053
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 6.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 331
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 6
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genotype quality: GenotypeQuality
  all individuals: 701
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genotype quality: GenotypeQuality
  all individuals: 12972
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 29225
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 937
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 1377
  bin: 7.75e1
  variant carriers: 0
hgvs: c.808-6G>A
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

20-30522492-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30522492
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 30522492
    reference: chr 20
allele count: 1
allele frequency: 1.020533126505286e-5
allele num: 97988
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365100
  ensembl transcript: ENST00000375934
  gene symbol: TTLL9
  hgvsc: ENST00000375934.4:c.711-3C>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365086
  ensembl transcript: ENST00000375921
  gene symbol: TTLL9
  hgvsc: ENST00000375921.2:c.633+831C>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000308980
  ensembl transcript: ENST00000310998
  gene symbol: TTLL9
  hgvsc: ENST00000310998.4:c.703-3C>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000442515
  ensembl transcript: ENST00000535842
  gene symbol: TTLL9
  hgvsc: ENST00000535842.1:c.808-3C>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365088
  ensembl transcript: ENST00000375922
  gene symbol: TTLL9
  hgvsc: ENST00000375922.4:c.634-3C>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365105
  ensembl transcript: ENST00000375938
  gene symbol: TTLL9
  hgvsc: ENST00000375938.4:c.808-3C>T
  variant of: http://identifiers.org/hgnc/16118
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2246
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4509
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10596
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6677
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1676
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33479
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1723
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1539
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4550
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1095
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 702
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11257
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 5.75e1
  variant carriers: 0
hgvs: c.808-3C>T
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP

20-30522497-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30522497
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 30522497
    reference: chr 20
allele count: 1
allele frequency: 9.74430932335516e-6
allele num: 102624
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000308980
  ensembl transcript: ENST00000310998
  gene symbol: TTLL9
  hgvsc: ENST00000310998.4:c.705C>T
  hgvsp: ENST00000310998.4:c.705C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000442515
  ensembl transcript: ENST00000535842
  gene symbol: TTLL9
  hgvsc: ENST00000535842.1:c.810C>T
  hgvsp: ENST00000535842.1:c.810C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365105
  ensembl transcript: ENST00000375938
  gene symbol: TTLL9
  hgvsc: ENST00000375938.4:c.810C>T
  hgvsp: ENST00000375938.4:c.810C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365100
  ensembl transcript: ENST00000375934
  gene symbol: TTLL9
  hgvsc: ENST00000375934.4:c.713C>T
  hgvsp: ENSP00000365100.4:p.Ala238Val
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365088
  ensembl transcript: ENST00000375922
  gene symbol: TTLL9
  hgvsc: ENST00000375922.4:c.636C>T
  hgvsp: ENST00000375922.4:c.636C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365086
  ensembl transcript: ENST00000375921
  gene symbol: TTLL9
  hgvsc: ENST00000375921.2:c.633+836C>T
  variant of: http://identifiers.org/hgnc/16118
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35375
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1518
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3609
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8447
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2690
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7727
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1557
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 486
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1381
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9042
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4941
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 610
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1415
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala238Val
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ

20-30522498-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30522498
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 30522498
    reference: chr 20
allele count: 1
allele frequency: 9.616124317255174e-6
allele num: 103992
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365105
  ensembl transcript: ENST00000375938
  gene symbol: TTLL9
  hgvsc: ENST00000375938.4:c.811T>G
  hgvsp: ENSP00000365105.4:p.Cys271Gly
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365100
  ensembl transcript: ENST00000375934
  gene symbol: TTLL9
  hgvsc: ENST00000375934.4:c.714T>G
  hgvsp: ENST00000375934.4:c.714T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000442515
  ensembl transcript: ENST00000535842
  gene symbol: TTLL9
  hgvsc: ENST00000535842.1:c.811T>G
  hgvsp: ENSP00000442515.1:p.Cys271Gly
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000308980
  ensembl transcript: ENST00000310998
  gene symbol: TTLL9
  hgvsc: ENST00000310998.4:c.706T>G
  hgvsp: ENSP00000308980.4:p.Cys236Gly
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365086
  ensembl transcript: ENST00000375921
  gene symbol: TTLL9
  hgvsc: ENST00000375921.2:c.633+837T>G
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365088
  ensembl transcript: ENST00000375922
  gene symbol: TTLL9
  hgvsc: ENST00000375922.4:c.637T>G
  hgvsp: ENSP00000365088.4:p.Cys213Gly
  variant of: http://identifiers.org/hgnc/16118
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1381
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7942
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3342
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36048
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7938
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2740
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1652
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5216
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1286
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 851
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1267
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Cys271Gly
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: QD

20-30522508-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30522508
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 30522508
    reference: chr 20
allele count: 583
allele frequency: 5.317790426152948e-3
allele num: 109632
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365086
  ensembl transcript: ENST00000375921
  gene symbol: TTLL9
  hgvsc: ENST00000375921.2:c.633+847C>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365105
  ensembl transcript: ENST00000375938
  gene symbol: TTLL9
  hgvsc: ENST00000375938.4:c.821C>T
  hgvsp: ENSP00000365105.4:p.Thr274Met
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000442515
  ensembl transcript: ENST00000535842
  gene symbol: TTLL9
  hgvsc: ENST00000535842.1:c.821C>T
  hgvsp: ENSP00000442515.1:p.Thr274Met
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000308980
  ensembl transcript: ENST00000310998
  gene symbol: TTLL9
  hgvsc: ENST00000310998.4:c.716C>T
  hgvsp: ENSP00000308980.4:p.Thr239Met
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365088
  ensembl transcript: ENST00000375922
  gene symbol: TTLL9
  hgvsc: ENST00000375922.4:c.647C>T
  hgvsp: ENSP00000365088.4:p.Thr216Met
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365100
  ensembl transcript: ENST00000375934
  gene symbol: TTLL9
  hgvsc: ENST00000375934.4:c.724C>T
  hgvsp: ENSP00000365100.4:p.Arg242Cys
  variant of: http://identifiers.org/hgnc/16118
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 5218
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 37439
  bin: 2.25e1
  variant carriers: 82
genotype depth: GenotypeDepth
  all individuals: 9566
  bin: 2.75e1
  variant carriers: 135
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 2372
  bin: 1.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 3.75e1
  variant carriers: 65
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3489
  bin: 3.25e1
  variant carriers: 91
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 4.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 1.75e1
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 4.25e1
  variant carriers: 50
genotype quality: GenotypeQuality
  all individuals: 1857
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2100
  bin: 7.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 5721
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36423
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 961
  bin: 9.75e1
  variant carriers: 564
genotype quality: GenotypeQuality
  all individuals: 692
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 9.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 4.25e1
  variant carriers: 1
hgvs: p.Thr274Met
num of homozygotes: 5
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ

20-30522509-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30522509
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 30522509
    reference: chr 20
allele count: 9
allele frequency: 8.100081000810008e-5
allele num: 111110
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365100
  ensembl transcript: ENST00000375934
  gene symbol: TTLL9
  hgvsc: ENST00000375934.4:c.725G>A
  hgvsp: ENSP00000365100.4:p.Arg242His
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365105
  ensembl transcript: ENST00000375938
  gene symbol: TTLL9
  hgvsc: ENST00000375938.4:c.822G>A
  hgvsp: ENST00000375938.4:c.822G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000442515
  ensembl transcript: ENST00000535842
  gene symbol: TTLL9
  hgvsc: ENST00000535842.1:c.822G>A
  hgvsp: ENST00000535842.1:c.822G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365088
  ensembl transcript: ENST00000375922
  gene symbol: TTLL9
  hgvsc: ENST00000375922.4:c.648G>A
  hgvsp: ENST00000375922.4:c.648G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000308980
  ensembl transcript: ENST00000310998
  gene symbol: TTLL9
  hgvsc: ENST00000310998.4:c.717G>A
  hgvsp: ENST00000310998.4:c.717G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365086
  ensembl transcript: ENST00000375921
  gene symbol: TTLL9
  hgvsc: ENST00000375921.2:c.633+848G>A
  variant of: http://identifiers.org/hgnc/16118
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4561
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 38028
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2102
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9905
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3645
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 890
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37996
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1942
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 472
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 521
  bin: 9.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 505
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5048
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg242His
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: South Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum

20-30522509-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30522509
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 30522509
    reference: chr 20
allele count: 1
allele frequency: 9.00009000090001e-6
allele num: 111110
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000442515
  ensembl transcript: ENST00000535842
  gene symbol: TTLL9
  hgvsc: ENST00000535842.1:c.822G>C
  hgvsp: ENST00000535842.1:c.822G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365100
  ensembl transcript: ENST00000375934
  gene symbol: TTLL9
  hgvsc: ENST00000375934.4:c.725G>C
  hgvsp: ENSP00000365100.4:p.Arg242Pro
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365086
  ensembl transcript: ENST00000375921
  gene symbol: TTLL9
  hgvsc: ENST00000375921.2:c.633+848G>C
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365088
  ensembl transcript: ENST00000375922
  gene symbol: TTLL9
  hgvsc: ENST00000375922.4:c.648G>C
  hgvsp: ENST00000375922.4:c.648G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365105
  ensembl transcript: ENST00000375938
  gene symbol: TTLL9
  hgvsc: ENST00000375938.4:c.822G>C
  hgvsp: ENST00000375938.4:c.822G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000308980
  ensembl transcript: ENST00000310998
  gene symbol: TTLL9
  hgvsc: ENST00000310998.4:c.717G>C
  hgvsp: ENST00000310998.4:c.717G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16118
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9905
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3645
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2102
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4561
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38028
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 521
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 505
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37996
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 513
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 461
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 472
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Arg242Pro
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum

20-30522513-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30522513
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 30522513
    reference: chr 20
allele count: 1
allele frequency: 8.799563541648334e-6
allele num: 113642
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365086
  ensembl transcript: ENST00000375921
  gene symbol: TTLL9
  hgvsc: ENST00000375921.2:c.633+852C>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365100
  ensembl transcript: ENST00000375934
  gene symbol: TTLL9
  hgvsc: ENST00000375934.4:c.729C>T
  hgvsp: ENST00000375934.4:c.729C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000308980
  ensembl transcript: ENST00000310998
  gene symbol: TTLL9
  hgvsc: ENST00000310998.4:c.721C>T
  hgvsp: ENSP00000308980.4:p.Gln241Ter
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000442515
  ensembl transcript: ENST00000535842
  gene symbol: TTLL9
  hgvsc: ENST00000535842.1:c.826C>T
  hgvsp: ENSP00000442515.1:p.Gln276Ter
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365105
  ensembl transcript: ENST00000375938
  gene symbol: TTLL9
  hgvsc: ENST00000375938.4:c.826C>T
  hgvsp: ENSP00000365105.4:p.Gln276Ter
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365088
  ensembl transcript: ENST00000375922
  gene symbol: TTLL9
  hgvsc: ENST00000375922.4:c.652C>T
  hgvsp: ENSP00000365088.4:p.Gln218Ter
  variant of: http://identifiers.org/hgnc/16118
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39177
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1574
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10436
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3922
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3335
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 579
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3696
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 667
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39659
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6330
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Gln276Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Other
population: Latino
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

20-30522516-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30522516
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 30522516
    reference: chr 20
allele count: 1
allele frequency: 8.707009142359599e-6
allele num: 114850
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000308980
  ensembl transcript: ENST00000310998
  gene symbol: TTLL9
  hgvsc: ENST00000310998.4:c.724C>G
  hgvsp: ENSP00000308980.4:p.Arg242Gly
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365088
  ensembl transcript: ENST00000375922
  gene symbol: TTLL9
  hgvsc: ENST00000375922.4:c.655C>G
  hgvsp: ENSP00000365088.4:p.Arg219Gly
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000442515
  ensembl transcript: ENST00000535842
  gene symbol: TTLL9
  hgvsc: ENST00000535842.1:c.829C>G
  hgvsp: ENSP00000442515.1:p.Arg277Gly
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365086
  ensembl transcript: ENST00000375921
  gene symbol: TTLL9
  hgvsc: ENST00000375921.2:c.633+855C>G
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365105
  ensembl transcript: ENST00000375938
  gene symbol: TTLL9
  hgvsc: ENST00000375938.4:c.829C>G
  hgvsp: ENSP00000365105.4:p.Arg277Gly
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365100
  ensembl transcript: ENST00000375934
  gene symbol: TTLL9
  hgvsc: ENST00000375934.4:c.732C>G
  hgvsp: ENSP00000365100.4:p.Ser244Arg
  variant of: http://identifiers.org/hgnc/16118
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10736
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39544
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2768
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4109
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1495
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40268
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 521
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2390
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg277Gly
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum

20-30522516-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30522516
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 30522516
    reference: chr 20
allele count: 3
allele frequency: 2.61210274270788e-5
allele num: 114850
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000308980
  ensembl transcript: ENST00000310998
  gene symbol: TTLL9
  hgvsc: ENST00000310998.4:c.724C>T
  hgvsp: ENSP00000308980.4:p.Arg242Cys
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000442515
  ensembl transcript: ENST00000535842
  gene symbol: TTLL9
  hgvsc: ENST00000535842.1:c.829C>T
  hgvsp: ENSP00000442515.1:p.Arg277Cys
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365088
  ensembl transcript: ENST00000375922
  gene symbol: TTLL9
  hgvsc: ENST00000375922.4:c.655C>T
  hgvsp: ENSP00000365088.4:p.Arg219Cys
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365086
  ensembl transcript: ENST00000375921
  gene symbol: TTLL9
  hgvsc: ENST00000375921.2:c.633+855C>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365105
  ensembl transcript: ENST00000375938
  gene symbol: TTLL9
  hgvsc: ENST00000375938.4:c.829C>T
  hgvsp: ENSP00000365105.4:p.Arg277Cys
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365100
  ensembl transcript: ENST00000375934
  gene symbol: TTLL9
  hgvsc: ENST00000375934.4:c.732C>T
  hgvsp: ENST00000375934.4:c.732C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16118
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 10736
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2768
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4109
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39544
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 503
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2086
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1495
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6471
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 590
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 535
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Arg277Cys
num of homozygotes: 1
population: Other
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

20-30522517-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30522517
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 30522517
    reference: chr 20
allele count: 11
allele frequency: 9.490940465918895e-5
allele num: 115900
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365086
  ensembl transcript: ENST00000375921
  gene symbol: TTLL9
  hgvsc: ENST00000375921.2:c.633+856G>A
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000442515
  ensembl transcript: ENST00000535842
  gene symbol: TTLL9
  hgvsc: ENST00000535842.1:c.830G>A
  hgvsp: ENSP00000442515.1:p.Arg277His
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365105
  ensembl transcript: ENST00000375938
  gene symbol: TTLL9
  hgvsc: ENST00000375938.4:c.830G>A
  hgvsp: ENSP00000365105.4:p.Arg277His
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365100
  ensembl transcript: ENST00000375934
  gene symbol: TTLL9
  hgvsc: ENST00000375934.4:c.733G>A
  hgvsp: ENSP00000365100.4:p.Ala245Thr
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365088
  ensembl transcript: ENST00000375922
  gene symbol: TTLL9
  hgvsc: ENST00000375922.4:c.656G>A
  hgvsp: ENSP00000365088.4:p.Arg219His
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000308980
  ensembl transcript: ENST00000310998
  gene symbol: TTLL9
  hgvsc: ENST00000310998.4:c.725G>A
  hgvsp: ENSP00000308980.4:p.Arg242His
  variant of: http://identifiers.org/hgnc/16118
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39992
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10895
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4237
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2307
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 9.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1529
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41041
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2584
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2152
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Arg277His
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

20-30522522-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30522522
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 30522522
    reference: chr 20
allele count: 1
allele frequency: 8.529366609235598e-6
allele num: 117242
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365088
  ensembl transcript: ENST00000375922
  gene symbol: TTLL9
  hgvsc: ENST00000375922.4:c.661C>T
  hgvsp: ENSP00000365088.4:p.Arg221Trp
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000442515
  ensembl transcript: ENST00000535842
  gene symbol: TTLL9
  hgvsc: ENST00000535842.1:c.835C>T
  hgvsp: ENSP00000442515.1:p.Arg279Trp
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365105
  ensembl transcript: ENST00000375938
  gene symbol: TTLL9
  hgvsc: ENST00000375938.4:c.835C>T
  hgvsp: ENSP00000365105.4:p.Arg279Trp
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000308980
  ensembl transcript: ENST00000310998
  gene symbol: TTLL9
  hgvsc: ENST00000310998.4:c.730C>T
  hgvsp: ENSP00000308980.4:p.Arg244Trp
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365086
  ensembl transcript: ENST00000375921
  gene symbol: TTLL9
  hgvsc: ENST00000375921.2:c.633+861C>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365100
  ensembl transcript: ENST00000375934
  gene symbol: TTLL9
  hgvsc: ENST00000375934.4:c.738C>T
  hgvsp: ENST00000375934.4:c.738C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16118
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4461
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40474
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11334
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2193
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6817
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1848
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Arg279Trp
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum

20-30522523-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30522523
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 30522523
    reference: chr 20
allele count: 1
allele frequency: 8.508900309723971e-6
allele num: 117524
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000308980
  ensembl transcript: ENST00000310998
  gene symbol: TTLL9
  hgvsc: ENST00000310998.4:c.731G>A
  hgvsp: ENSP00000308980.4:p.Arg244Gln
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365100
  ensembl transcript: ENST00000375934
  gene symbol: TTLL9
  hgvsc: ENST00000375934.4:c.739G>A
  hgvsp: ENSP00000365100.4:p.Gly247Ser
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000442515
  ensembl transcript: ENST00000535842
  gene symbol: TTLL9
  hgvsc: ENST00000535842.1:c.836G>A
  hgvsp: ENSP00000442515.1:p.Arg279Gln
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365088
  ensembl transcript: ENST00000375922
  gene symbol: TTLL9
  hgvsc: ENST00000375922.4:c.662G>A
  hgvsp: ENSP00000365088.4:p.Arg221Gln
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365105
  ensembl transcript: ENST00000375938
  gene symbol: TTLL9
  hgvsc: ENST00000375938.4:c.836G>A
  hgvsp: ENSP00000365105.4:p.Arg279Gln
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365086
  ensembl transcript: ENST00000375921
  gene symbol: TTLL9
  hgvsc: ENST00000375921.2:c.633+862G>A
  variant of: http://identifiers.org/hgnc/16118
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4537
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11447
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40504
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 554
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42017
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2233
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1599
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg279Gln
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

20-30522524-GC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30522524
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 30522523
    reference: chr 20
allele count: 7
allele frequency: 5.942174156635711e-5
allele num: 117802
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365088
  ensembl transcript: ENST00000375922
  gene symbol: TTLL9
  hgvsc: ENST00000375922.4:c.664delC
  hgvsp: ENSP00000365088.4:p.Gln222SerfsTer33
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000442515
  ensembl transcript: ENST00000535842
  gene symbol: TTLL9
  hgvsc: ENST00000535842.1:c.838delC
  hgvsp: ENSP00000442515.1:p.Gln280SerfsTer33
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365105
  ensembl transcript: ENST00000375938
  gene symbol: TTLL9
  hgvsc: ENST00000375938.4:c.838delC
  hgvsp: ENSP00000365105.4:p.Gln280SerfsTer33
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365086
  ensembl transcript: ENST00000375921
  gene symbol: TTLL9
  hgvsc: ENST00000375921.2:c.633+864delC
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000308980
  ensembl transcript: ENST00000310998
  gene symbol: TTLL9
  hgvsc: ENST00000310998.4:c.733delC
  hgvsp: ENSP00000308980.4:p.Gln245SerfsTer33
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365100
  ensembl transcript: ENST00000375934
  gene symbol: TTLL9
  hgvsc: ENST00000375934.4:c.741delC
  hgvsp: ENSP00000365100.4:p.Ser248ValfsTer36
  variant of: http://identifiers.org/hgnc/16118
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40537
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4591
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11534
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1563
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2264
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2547
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 576
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gln280SerfsTer33
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: GC
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD

http://identifiers.org/exac.variant/20-30522535-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30522535
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 30522535
    reference: chr 20
allele count: 1
allele frequency: 8.383775717232013e-6
allele num: 119278
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000308980
  ensembl transcript: ENST00000310998
  gene symbol: TTLL9
  hgvsc: ENST00000310998.4:c.743C>A
  hgvsp: ENSP00000308980.4:p.Ala248Glu
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365088
  ensembl transcript: ENST00000375922
  gene symbol: TTLL9
  hgvsc: ENST00000375922.4:c.674C>A
  hgvsp: ENSP00000365088.4:p.Ala225Glu
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365100
  ensembl transcript: ENST00000375934
  gene symbol: TTLL9
  hgvsc: ENST00000375934.4:c.751C>A
  hgvsp: ENSP00000365100.4:p.Arg251Ser
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000442515
  ensembl transcript: ENST00000535842
  gene symbol: TTLL9
  hgvsc: ENST00000535842.1:c.848C>A
  hgvsp: ENSP00000442515.1:p.Ala283Glu
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365105
  ensembl transcript: ENST00000375938
  gene symbol: TTLL9
  hgvsc: ENST00000375938.4:c.848C>A
  hgvsp: ENSP00000365105.4:p.Ala283Glu
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365086
  ensembl transcript: ENST00000375921
  gene symbol: TTLL9
  hgvsc: ENST00000375921.2:c.633+874C>A
  variant of: http://identifiers.org/hgnc/16118
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4894
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12081
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40860
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2610
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43176
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2310
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala283Glu
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: MQ

20-30522535-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30522535
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 30522535
    reference: chr 20
allele count: 3
allele frequency: 2.515132715169604e-5
allele num: 119278
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000308980
  ensembl transcript: ENST00000310998
  gene symbol: TTLL9
  hgvsc: ENST00000310998.4:c.743C>T
  hgvsp: ENSP00000308980.4:p.Ala248Val
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000442515
  ensembl transcript: ENST00000535842
  gene symbol: TTLL9
  hgvsc: ENST00000535842.1:c.848C>T
  hgvsp: ENSP00000442515.1:p.Ala283Val
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365105
  ensembl transcript: ENST00000375938
  gene symbol: TTLL9
  hgvsc: ENST00000375938.4:c.848C>T
  hgvsp: ENSP00000365105.4:p.Ala283Val
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365100
  ensembl transcript: ENST00000375934
  gene symbol: TTLL9
  hgvsc: ENST00000375934.4:c.751C>T
  hgvsp: ENSP00000365100.4:p.Arg251Cys
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365088
  ensembl transcript: ENST00000375922
  gene symbol: TTLL9
  hgvsc: ENST00000375922.4:c.674C>T
  hgvsp: ENSP00000365088.4:p.Ala225Val
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365086
  ensembl transcript: ENST00000375921
  gene symbol: TTLL9
  hgvsc: ENST00000375921.2:c.633+874C>T
  variant of: http://identifiers.org/hgnc/16118
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12081
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40860
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4894
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2610
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2310
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala283Val
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum

20-30522536-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30522536
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 30522536
    reference: chr 20
allele count: 34
allele frequency: 2.846617548559946e-4
allele num: 119440
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365086
  ensembl transcript: ENST00000375921
  gene symbol: TTLL9
  hgvsc: ENST00000375921.2:c.633+875G>A
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365105
  ensembl transcript: ENST00000375938
  gene symbol: TTLL9
  hgvsc: ENST00000375938.4:c.849G>A
  hgvsp: ENST00000375938.4:c.849G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365088
  ensembl transcript: ENST00000375922
  gene symbol: TTLL9
  hgvsc: ENST00000375922.4:c.675G>A
  hgvsp: ENST00000375922.4:c.675G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000442515
  ensembl transcript: ENST00000535842
  gene symbol: TTLL9
  hgvsc: ENST00000535842.1:c.849G>A
  hgvsp: ENST00000535842.1:c.849G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000308980
  ensembl transcript: ENST00000310998
  gene symbol: TTLL9
  hgvsc: ENST00000310998.4:c.744G>A
  hgvsp: ENST00000310998.4:c.744G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365100
  ensembl transcript: ENST00000375934
  gene symbol: TTLL9
  hgvsc: ENST00000375934.4:c.752G>A
  hgvsp: ENSP00000365100.4:p.Arg251His
  variant of: http://identifiers.org/hgnc/16118
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12135
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4901
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40906
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 9.75e1
  variant carriers: 34
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 580
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2328
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Arg251His
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: VQSLOD

20-30522543-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30522543
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 30522543
    reference: chr 20
allele count: 5
allele frequency: 4.172508178116029e-5
allele num: 119832
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365105
  ensembl transcript: ENST00000375938
  gene symbol: TTLL9
  hgvsc: ENST00000375938.4:c.856C>T
  hgvsp: ENSP00000365105.4:p.His286Tyr
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000442515
  ensembl transcript: ENST00000535842
  gene symbol: TTLL9
  hgvsc: ENST00000535842.1:c.856C>T
  hgvsp: ENSP00000442515.1:p.His286Tyr
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000308980
  ensembl transcript: ENST00000310998
  gene symbol: TTLL9
  hgvsc: ENST00000310998.4:c.751C>T
  hgvsp: ENSP00000308980.4:p.His251Tyr
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365088
  ensembl transcript: ENST00000375922
  gene symbol: TTLL9
  hgvsc: ENST00000375922.4:c.682C>T
  hgvsp: ENSP00000365088.4:p.His228Tyr
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365086
  ensembl transcript: ENST00000375921
  gene symbol: TTLL9
  hgvsc: ENST00000375921.2:c.633+882C>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365100
  ensembl transcript: ENST00000375934
  gene symbol: TTLL9
  hgvsc: ENST00000375934.4:c.759C>T
  hgvsp: ENST00000375934.4:c.759C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16118
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4930
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41038
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12298
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1680
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 499
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
hgvs: p.His286Tyr
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

20-30522545-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30522545
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 30522545
    reference: chr 20
allele count: 308
allele frequency: 2.568978747539452e-3
allele num: 119892
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365088
  ensembl transcript: ENST00000375922
  gene symbol: TTLL9
  hgvsc: ENST00000375922.4:c.684C>T
  hgvsp: ENST00000375922.4:c.684C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365100
  ensembl transcript: ENST00000375934
  gene symbol: TTLL9
  hgvsc: ENST00000375934.4:c.761C>T
  hgvsp: ENSP00000365100.4:p.Thr254Met
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000308980
  ensembl transcript: ENST00000310998
  gene symbol: TTLL9
  hgvsc: ENST00000310998.4:c.753C>T
  hgvsp: ENST00000310998.4:c.753C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365086
  ensembl transcript: ENST00000375921
  gene symbol: TTLL9
  hgvsc: ENST00000375921.2:c.633+884C>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000442515
  ensembl transcript: ENST00000535842
  gene symbol: TTLL9
  hgvsc: ENST00000535842.1:c.858C>T
  hgvsp: ENST00000535842.1:c.858C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365105
  ensembl transcript: ENST00000375938
  gene symbol: TTLL9
  hgvsc: ENST00000375938.4:c.858C>T
  hgvsp: ENST00000375938.4:c.858C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16118
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.25e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 5.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12307
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4933
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 4.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 3.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40794
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 4.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.25e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 455
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7202
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Thr254Met
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

20-30522546-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30522546
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 30522546
    reference: chr 20
allele count: 1
allele frequency: 8.33541718763024e-6
allele num: 119970
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000442515
  ensembl transcript: ENST00000535842
  gene symbol: TTLL9
  hgvsc: ENST00000535842.1:c.859G>A
  hgvsp: ENSP00000442515.1:p.Gly287Arg
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365105
  ensembl transcript: ENST00000375938
  gene symbol: TTLL9
  hgvsc: ENST00000375938.4:c.859G>A
  hgvsp: ENSP00000365105.4:p.Gly287Arg
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365088
  ensembl transcript: ENST00000375922
  gene symbol: TTLL9
  hgvsc: ENST00000375922.4:c.685G>A
  hgvsp: ENSP00000365088.4:p.Gly229Arg
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000308980
  ensembl transcript: ENST00000310998
  gene symbol: TTLL9
  hgvsc: ENST00000310998.4:c.754G>A
  hgvsp: ENSP00000308980.4:p.Gly252Arg
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365100
  ensembl transcript: ENST00000375934
  gene symbol: TTLL9
  hgvsc: ENST00000375934.4:c.762G>A
  hgvsp: ENST00000375934.4:c.762G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365086
  ensembl transcript: ENST00000375921
  gene symbol: TTLL9
  hgvsc: ENST00000375921.2:c.633+885G>A
  variant of: http://identifiers.org/hgnc/16118
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4980
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40808
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12380
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43698
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2665
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 567
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7249
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 418
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gly287Arg
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: QD

20-30522551-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30522551
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 30522551
    reference: chr 20
allele count: 2
allele frequency: 1.664447403462051e-5
allele num: 120160
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365100
  ensembl transcript: ENST00000375934
  gene symbol: TTLL9
  hgvsc: ENST00000375934.4:c.767C>T
  hgvsp: ENSP00000365100.4:p.Pro256Leu
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000442515
  ensembl transcript: ENST00000535842
  gene symbol: TTLL9
  hgvsc: ENST00000535842.1:c.864C>T
  hgvsp: ENST00000535842.1:c.864C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365105
  ensembl transcript: ENST00000375938
  gene symbol: TTLL9
  hgvsc: ENST00000375938.4:c.864C>T
  hgvsp: ENST00000375938.4:c.864C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000308980
  ensembl transcript: ENST00000310998
  gene symbol: TTLL9
  hgvsc: ENST00000310998.4:c.759C>T
  hgvsp: ENST00000310998.4:c.759C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365088
  ensembl transcript: ENST00000375922
  gene symbol: TTLL9
  hgvsc: ENST00000375922.4:c.690C>T
  hgvsp: ENST00000375922.4:c.690C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365086
  ensembl transcript: ENST00000375921
  gene symbol: TTLL9
  hgvsc: ENST00000375921.2:c.633+890C>T
  variant of: http://identifiers.org/hgnc/16118
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12497
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40789
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5024
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1692
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 597
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43824
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 566
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Pro256Leu
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: C
site quality: QD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

20-30522552-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30522552
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 30522552
    reference: chr 20
allele count: 1
allele frequency: 8.316423272678886e-6
allele num: 120244
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365088
  ensembl transcript: ENST00000375922
  gene symbol: TTLL9
  hgvsc: ENST00000375922.4:c.691G>A
  hgvsp: ENSP00000365088.4:p.Glu231Lys
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000442515
  ensembl transcript: ENST00000535842
  gene symbol: TTLL9
  hgvsc: ENST00000535842.1:c.865G>A
  hgvsp: ENSP00000442515.1:p.Glu289Lys
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365100
  ensembl transcript: ENST00000375934
  gene symbol: TTLL9
  hgvsc: ENST00000375934.4:c.768G>A
  hgvsp: ENST00000375934.4:c.768G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000308980
  ensembl transcript: ENST00000310998
  gene symbol: TTLL9
  hgvsc: ENST00000310998.4:c.760G>A
  hgvsp: ENSP00000308980.4:p.Glu254Lys
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365105
  ensembl transcript: ENST00000375938
  gene symbol: TTLL9
  hgvsc: ENST00000375938.4:c.865G>A
  hgvsp: ENSP00000365105.4:p.Glu289Lys
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365086
  ensembl transcript: ENST00000375921
  gene symbol: TTLL9
  hgvsc: ENST00000375921.2:c.633+891G>A
  variant of: http://identifiers.org/hgnc/16118
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12529
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40813
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5035
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43890
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 601
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1696
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Glu289Lys
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum

20-30522553-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30522553
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 30522553
    reference: chr 20
allele count: 1
allele frequency: 8.314625426124552e-6
allele num: 120270
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000442515
  ensembl transcript: ENST00000535842
  gene symbol: TTLL9
  hgvsc: ENST00000535842.1:c.866A>G
  hgvsp: ENSP00000442515.1:p.Glu289Gly
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000308980
  ensembl transcript: ENST00000310998
  gene symbol: TTLL9
  hgvsc: ENST00000310998.4:c.761A>G
  hgvsp: ENSP00000308980.4:p.Glu254Gly
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365105
  ensembl transcript: ENST00000375938
  gene symbol: TTLL9
  hgvsc: ENST00000375938.4:c.866A>G
  hgvsp: ENSP00000365105.4:p.Glu289Gly
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365100
  ensembl transcript: ENST00000375934
  gene symbol: TTLL9
  hgvsc: ENST00000375934.4:c.769A>G
  hgvsp: ENSP00000365100.4:p.Arg257Gly
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365086
  ensembl transcript: ENST00000375921
  gene symbol: TTLL9
  hgvsc: ENST00000375921.2:c.633+892A>G
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365088
  ensembl transcript: ENST00000375922
  gene symbol: TTLL9
  hgvsc: ENST00000375922.4:c.692A>G
  hgvsp: ENSP00000365088.4:p.Glu231Gly
  variant of: http://identifiers.org/hgnc/16118
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5033
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40807
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12557
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2355
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1699
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 602
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Glu289Gly
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: African
reference allele: A
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

20-30522563-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30522563
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 30522563
    reference: chr 20
allele count: 2
allele frequency: 1.660164356271271e-5
allele num: 120470
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365105
  ensembl transcript: ENST00000375938
  gene symbol: TTLL9
  hgvsc: ENST00000375938.4:c.876G>A
  hgvsp: ENST00000375938.4:c.876G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365088
  ensembl transcript: ENST00000375922
  gene symbol: TTLL9
  hgvsc: ENST00000375922.4:c.702G>A
  hgvsp: ENST00000375922.4:c.702G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000308980
  ensembl transcript: ENST00000310998
  gene symbol: TTLL9
  hgvsc: ENST00000310998.4:c.771G>A
  hgvsp: ENST00000310998.4:c.771G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365086
  ensembl transcript: ENST00000375921
  gene symbol: TTLL9
  hgvsc: ENST00000375921.2:c.633+902G>A
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000442515
  ensembl transcript: ENST00000535842
  gene symbol: TTLL9
  hgvsc: ENST00000535842.1:c.876G>A
  hgvsp: ENST00000535842.1:c.876G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365100
  ensembl transcript: ENST00000375934
  gene symbol: TTLL9
  hgvsc: ENST00000375934.4:c.779G>A
  hgvsp: ENSP00000365100.4:p.Arg260Lys
  variant of: http://identifiers.org/hgnc/16118
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5068
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12633
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40869
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1708
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44074
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 744
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 602
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 576
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg260Lys
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: DP

20-30522579-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30522579
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 30522579
    reference: chr 20
allele count: 2
allele frequency: 1.658402295228776e-5
allele num: 120598
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365105
  ensembl transcript: ENST00000375938
  gene symbol: TTLL9
  hgvsc: ENST00000375938.4:c.892A>G
  hgvsp: ENSP00000365105.4:p.Ile298Val
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365088
  ensembl transcript: ENST00000375922
  gene symbol: TTLL9
  hgvsc: ENST00000375922.4:c.718A>G
  hgvsp: ENSP00000365088.4:p.Ile240Val
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365100
  ensembl transcript: ENST00000375934
  gene symbol: TTLL9
  hgvsc: ENST00000375934.4:c.795A>G
  hgvsp: ENST00000375934.4:c.795A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000308980
  ensembl transcript: ENST00000310998
  gene symbol: TTLL9
  hgvsc: ENST00000310998.4:c.787A>G
  hgvsp: ENSP00000308980.4:p.Ile263Val
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000442515
  ensembl transcript: ENST00000535842
  gene symbol: TTLL9
  hgvsc: ENST00000535842.1:c.892A>G
  hgvsp: ENSP00000442515.1:p.Ile298Val
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365086
  ensembl transcript: ENST00000375921
  gene symbol: TTLL9
  hgvsc: ENST00000375921.2:c.633+918A>G
  variant of: http://identifiers.org/hgnc/16118
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12685
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40883
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5086
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2688
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ile298Val
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

20-30522581-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30522581
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 30522581
    reference: chr 20
allele count: 4
allele frequency: 3.316419593406958e-5
allele num: 120612
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000308980
  ensembl transcript: ENST00000310998
  gene symbol: TTLL9
  hgvsc: ENST00000310998.4:c.789C>T
  hgvsp: ENST00000310998.4:c.789C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000442515
  ensembl transcript: ENST00000535842
  gene symbol: TTLL9
  hgvsc: ENST00000535842.1:c.894C>T
  hgvsp: ENST00000535842.1:c.894C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365086
  ensembl transcript: ENST00000375921
  gene symbol: TTLL9
  hgvsc: ENST00000375921.2:c.633+920C>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365105
  ensembl transcript: ENST00000375938
  gene symbol: TTLL9
  hgvsc: ENST00000375938.4:c.894C>T
  hgvsp: ENST00000375938.4:c.894C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365088
  ensembl transcript: ENST00000375922
  gene symbol: TTLL9
  hgvsc: ENST00000375922.4:c.720C>T
  hgvsp: ENST00000375922.4:c.720C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365100
  ensembl transcript: ENST00000375934
  gene symbol: TTLL9
  hgvsc: ENST00000375934.4:c.797C>T
  hgvsp: ENSP00000365100.4:p.Ser266Leu
  variant of: http://identifiers.org/hgnc/16118
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12685
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40883
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5088
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7368
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1711
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 751
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2377
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ser266Leu
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

20-30522582-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30522582
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 30522582
    reference: chr 20
allele count: 5
allele frequency: 4.145593234391841e-5
allele num: 120610
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000442515
  ensembl transcript: ENST00000535842
  gene symbol: TTLL9
  hgvsc: ENST00000535842.1:c.895G>A
  hgvsp: ENSP00000442515.1:p.Asp299Asn
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365100
  ensembl transcript: ENST00000375934
  gene symbol: TTLL9
  hgvsc: ENST00000375934.4:c.798G>A
  hgvsp: ENST00000375934.4:c.798G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000308980
  ensembl transcript: ENST00000310998
  gene symbol: TTLL9
  hgvsc: ENST00000310998.4:c.790G>A
  hgvsp: ENSP00000308980.4:p.Asp264Asn
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365105
  ensembl transcript: ENST00000375938
  gene symbol: TTLL9
  hgvsc: ENST00000375938.4:c.895G>A
  hgvsp: ENSP00000365105.4:p.Asp299Asn
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365086
  ensembl transcript: ENST00000375921
  gene symbol: TTLL9
  hgvsc: ENST00000375921.2:c.633+921G>A
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365088
  ensembl transcript: ENST00000375922
  gene symbol: TTLL9
  hgvsc: ENST00000375922.4:c.721G>A
  hgvsp: ENSP00000365088.4:p.Asp241Asn
  variant of: http://identifiers.org/hgnc/16118
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12693
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5092
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40872
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 605
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 755
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Asp299Asn
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP

20-30522582-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30522582
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 30522582
    reference: chr 20
allele count: 1
allele frequency: 8.291186468783682e-6
allele num: 120610
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365088
  ensembl transcript: ENST00000375922
  gene symbol: TTLL9
  hgvsc: ENST00000375922.4:c.721G>C
  hgvsp: ENSP00000365088.4:p.Asp241His
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365086
  ensembl transcript: ENST00000375921
  gene symbol: TTLL9
  hgvsc: ENST00000375921.2:c.633+921G>C
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365105
  ensembl transcript: ENST00000375938
  gene symbol: TTLL9
  hgvsc: ENST00000375938.4:c.895G>C
  hgvsp: ENSP00000365105.4:p.Asp299His
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000442515
  ensembl transcript: ENST00000535842
  gene symbol: TTLL9
  hgvsc: ENST00000535842.1:c.895G>C
  hgvsp: ENSP00000442515.1:p.Asp299His
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365100
  ensembl transcript: ENST00000375934
  gene symbol: TTLL9
  hgvsc: ENST00000375934.4:c.798G>C
  hgvsp: ENST00000375934.4:c.798G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000308980
  ensembl transcript: ENST00000310998
  gene symbol: TTLL9
  hgvsc: ENST00000310998.4:c.790G>C
  hgvsp: ENSP00000308980.4:p.Asp264His
  variant of: http://identifiers.org/hgnc/16118
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40872
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12693
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5092
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1711
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 755
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asp299His
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: South Asian
population: Latino
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP

20-30522586-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30522586
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 30522586
    reference: chr 20
allele count: 1
allele frequency: 8.290774026663129e-6
allele num: 120616
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365088
  ensembl transcript: ENST00000375922
  gene symbol: TTLL9
  hgvsc: ENST00000375922.4:c.725A>G
  hgvsp: ENSP00000365088.4:p.Asn242Ser
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000308980
  ensembl transcript: ENST00000310998
  gene symbol: TTLL9
  hgvsc: ENST00000310998.4:c.794A>G
  hgvsp: ENSP00000308980.4:p.Asn265Ser
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365086
  ensembl transcript: ENST00000375921
  gene symbol: TTLL9
  hgvsc: ENST00000375921.2:c.633+925A>G
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365100
  ensembl transcript: ENST00000375934
  gene symbol: TTLL9
  hgvsc: ENST00000375934.4:c.802A>G
  hgvsp: ENSP00000365100.4:p.Thr268Ala
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365105
  ensembl transcript: ENST00000375938
  gene symbol: TTLL9
  hgvsc: ENST00000375938.4:c.899A>G
  hgvsp: ENSP00000365105.4:p.Asn300Ser
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000442515
  ensembl transcript: ENST00000535842
  gene symbol: TTLL9
  hgvsc: ENST00000535842.1:c.899A>G
  hgvsp: ENSP00000442515.1:p.Asn300Ser
  variant of: http://identifiers.org/hgnc/16118
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12697
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5100
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40870
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 605
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7373
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1713
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Asn300Ser
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

20-30522603-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30522603
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 30522603
    reference: chr 20
allele count: 1
allele frequency: 8.286651861182008e-6
allele num: 120676
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365086
  ensembl transcript: ENST00000375921
  gene symbol: TTLL9
  hgvsc: ENST00000375921.2:c.633+942C>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365100
  ensembl transcript: ENST00000375934
  gene symbol: TTLL9
  hgvsc: ENST00000375934.4:c.819C>T
  hgvsp: ENST00000375934.4:c.819C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000308980
  ensembl transcript: ENST00000310998
  gene symbol: TTLL9
  hgvsc: ENST00000310998.4:c.811C>T
  hgvsp: ENST00000310998.4:c.811C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000442515
  ensembl transcript: ENST00000535842
  gene symbol: TTLL9
  hgvsc: ENST00000535842.1:c.916C>T
  hgvsp: ENST00000535842.1:c.916C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365088
  ensembl transcript: ENST00000375922
  gene symbol: TTLL9
  hgvsc: ENST00000375922.4:c.742C>T
  hgvsp: ENST00000375922.4:c.742C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365105
  ensembl transcript: ENST00000375938
  gene symbol: TTLL9
  hgvsc: ENST00000375938.4:c.916C>T
  hgvsp: ENST00000375938.4:c.916C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16118
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5096
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40862
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12727
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 579
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44170
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1714
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Leu306Leu
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP

http://identifiers.org/exac.variant/20-30522606-CA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30522606
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 30522605
    reference: chr 20
allele count: 1
allele frequency: 8.286789200656313e-6
allele num: 120674
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365086
  ensembl transcript: ENST00000375921
  gene symbol: TTLL9
  hgvsc: ENST00000375921.2:c.633+946delA
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365088
  ensembl transcript: ENST00000375922
  gene symbol: TTLL9
  hgvsc: ENST00000375922.4:c.746delA
  hgvsp: ENSP00000365088.4:p.Gln249ArgfsTer6
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365100
  ensembl transcript: ENST00000375934
  gene symbol: TTLL9
  hgvsc: ENST00000375934.4:c.823delA
  hgvsp: ENSP00000365100.4:p.Arg275GlufsTer9
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000308980
  ensembl transcript: ENST00000310998
  gene symbol: TTLL9
  hgvsc: ENST00000310998.4:c.815delA
  hgvsp: ENSP00000308980.4:p.Gln272ArgfsTer6
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365105
  ensembl transcript: ENST00000375938
  gene symbol: TTLL9
  hgvsc: ENST00000375938.4:c.920delA
  hgvsp: ENSP00000365105.4:p.Gln307ArgfsTer6
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000442515
  ensembl transcript: ENST00000535842
  gene symbol: TTLL9
  hgvsc: ENST00000535842.1:c.920delA
  hgvsp: ENSP00000442515.1:p.Gln307ArgfsTer6
  variant of: http://identifiers.org/hgnc/16118
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5098
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12733
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40853
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 578
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1713
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7371
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 755
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2381
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gln307ArgfsTer6
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: African
reference allele: CA
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ

20-30522612-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30522612
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 30522612
    reference: chr 20
allele count: 2
allele frequency: 1.657275439177991e-5
allele num: 120680
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000308980
  ensembl transcript: ENST00000310998
  gene symbol: TTLL9
  hgvsc: ENST00000310998.4:c.820G>A
  hgvsp: ENSP00000308980.4:p.Val274Met
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365105
  ensembl transcript: ENST00000375938
  gene symbol: TTLL9
  hgvsc: ENST00000375938.4:c.925G>A
  hgvsp: ENSP00000365105.4:p.Val309Met
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365088
  ensembl transcript: ENST00000375922
  gene symbol: TTLL9
  hgvsc: ENST00000375922.4:c.751G>A
  hgvsp: ENSP00000365088.4:p.Val251Met
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000442515
  ensembl transcript: ENST00000535842
  gene symbol: TTLL9
  hgvsc: ENST00000535842.1:c.925G>A
  hgvsp: ENSP00000442515.1:p.Val309Met
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365100
  ensembl transcript: ENST00000375934
  gene symbol: TTLL9
  hgvsc: ENST00000375934.4:c.828G>A
  hgvsp: ENST00000375934.4:c.828G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365086
  ensembl transcript: ENST00000375921
  gene symbol: TTLL9
  hgvsc: ENST00000375921.2:c.633+951G>A
  variant of: http://identifiers.org/hgnc/16118
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5097
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40850
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12736
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1711
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2693
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2379
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 606
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 577
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Val309Met
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: QD

20-30522624-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30522624
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 30522624
    reference: chr 20
allele count: 9
allele frequency: 7.459470211848954e-5
allele num: 120652
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000442515
  ensembl transcript: ENST00000535842
  gene symbol: TTLL9
  hgvsc: ENST00000535842.1:c.937A>G
  hgvsp: ENSP00000442515.1:p.Ile313Val
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365086
  ensembl transcript: ENST00000375921
  gene symbol: TTLL9
  hgvsc: ENST00000375921.2:c.633+963A>G
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000308980
  ensembl transcript: ENST00000310998
  gene symbol: TTLL9
  hgvsc: ENST00000310998.4:c.832A>G
  hgvsp: ENSP00000308980.4:p.Ile278Val
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: stop_lost
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365100
  ensembl transcript: ENST00000375934
  gene symbol: TTLL9
  hgvsc: ENST00000375934.4:c.840A>G
  hgvsp: ENSP00000365100.4:p.Ter280TrpextTer34
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365088
  ensembl transcript: ENST00000375922
  gene symbol: TTLL9
  hgvsc: ENST00000375922.4:c.763A>G
  hgvsp: ENSP00000365088.4:p.Ile255Val
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365105
  ensembl transcript: ENST00000375938
  gene symbol: TTLL9
  hgvsc: ENST00000375938.4:c.937A>G
  hgvsp: ENSP00000365105.4:p.Ile313Val
  variant of: http://identifiers.org/hgnc/16118
canonical: false
consequence: stop lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12747
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40789
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5100
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2380
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1713
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 607
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ter280TrpextTer34
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: VQSLOD

20-30522648-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30522648
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 30522648
    reference: chr 20
allele count: 2
allele frequency: 1.6641427168794e-5
allele num: 120182
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365100
  ensembl transcript: ENST00000375934
  gene symbol: TTLL9
  hgvsc: ENST00000375934.4:c.*24G>A
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365105
  ensembl transcript: ENST00000375938
  gene symbol: TTLL9
  hgvsc: ENST00000375938.4:c.961G>A
  hgvsp: ENSP00000365105.4:p.Glu321Lys
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000442515
  ensembl transcript: ENST00000535842
  gene symbol: TTLL9
  hgvsc: ENST00000535842.1:c.961G>A
  hgvsp: ENSP00000442515.1:p.Glu321Lys
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365086
  ensembl transcript: ENST00000375921
  gene symbol: TTLL9
  hgvsc: ENST00000375921.2:c.633+987G>A
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365088
  ensembl transcript: ENST00000375922
  gene symbol: TTLL9
  hgvsc: ENST00000375922.4:c.787G>A
  hgvsp: ENSP00000365088.4:p.Glu263Lys
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000308980
  ensembl transcript: ENST00000310998
  gene symbol: TTLL9
  hgvsc: ENST00000310998.4:c.856G>A
  hgvsp: ENSP00000308980.4:p.Glu286Lys
  variant of: http://identifiers.org/hgnc/16118
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40243
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12606
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5068
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43415
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 576
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 762
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 569
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Glu321Lys
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: DP

20-30522648-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30522648
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 30522648
    reference: chr 20
allele count: 1
allele frequency: 8.320713584396998e-6
allele num: 120182
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365088
  ensembl transcript: ENST00000375922
  gene symbol: TTLL9
  hgvsc: ENST00000375922.4:c.787G>T
  hgvsp: ENSP00000365088.4:p.Glu263Ter
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365086
  ensembl transcript: ENST00000375921
  gene symbol: TTLL9
  hgvsc: ENST00000375921.2:c.633+987G>T
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365105
  ensembl transcript: ENST00000375938
  gene symbol: TTLL9
  hgvsc: ENST00000375938.4:c.961G>T
  hgvsp: ENSP00000365105.4:p.Glu321Ter
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000442515
  ensembl transcript: ENST00000535842
  gene symbol: TTLL9
  hgvsc: ENST00000535842.1:c.961G>T
  hgvsp: ENSP00000442515.1:p.Glu321Ter
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000308980
  ensembl transcript: ENST00000310998
  gene symbol: TTLL9
  hgvsc: ENST00000310998.4:c.856G>T
  hgvsp: ENSP00000308980.4:p.Glu286Ter
  variant of: http://identifiers.org/hgnc/16118
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000131044
  ensembl protein: ENSP00000365100
  ensembl transcript: ENST00000375934
  gene symbol: TTLL9
  hgvsc: ENST00000375934.4:c.*24G>T
  variant of: http://identifiers.org/hgnc/16118
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5068
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12606
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40243
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Glu321Ter
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 1652
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 335
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9506
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13004
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9056
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5316
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 750
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8066
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6804
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.821427270409093e-5
allele num: 54902
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.095e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.062e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.896e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

MQRankSum
type: SiteQuality
SIO_000300: -3.55e-1

QD
type: SiteQuality
SIO_000300: 5.44e0

MQ
type: SiteQuality
SIO_000300: 5.911e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.9e-3

DP
type: SiteQuality
SIO_000300: 9.75886e5

GenotypeQuality
all individuals: 811
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 995
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1212
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5516
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5787
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.884019744526923e-5
allele num: 53078
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6534
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 718
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8690
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7814
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5142
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -8.8e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.77e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.016e0

DP
type: SiteQuality
SIO_000300: 9.08018e5

MQRankSum
type: SiteQuality
SIO_000300: -1.01e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.363e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.77e-1

GenotypeQuality
all individuals: 2249
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1593
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 31192
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 299
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5906
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7796
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 52682
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5102
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 3.235722375020223e-4
allele num: 12362
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 714
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6484
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 6.74e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.96e-1

QD
type: SiteQuality
SIO_000300: 1.033e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.42e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.55e-1

DP
type: SiteQuality
SIO_000300: 8.95062e5

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.12e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 127
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2378
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 703
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 668
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 2.05279796362442e-5
allele num: 48714
num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 1.768659356207994e-4
allele num: 11308
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Latino
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allele frequency: 0.0e0
allele num: 7558
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 7262
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4726
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
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ClippingRankSum
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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VQSLOD
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FS
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DP
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MQ
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 9.449999999999999e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 43482
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 10098
num of homozygotes: 0

Latino
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allele frequency: 1.585288522511097e-4
allele num: 6308
num of homozygotes: 0

Other
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East Asian
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 6486
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.96e-1

BaseQRankSum
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MQ
type: SiteQuality
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QD
type: SiteQuality
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FS
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SIO_000300: 2.963e0

ReadPosRankSum
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VQSLOD
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DP
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 41250
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 5858
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East Asian
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allele frequency: 2.228163992869875e-4
allele num: 4488
num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
allele num: 9604
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3984
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 564
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.92886e5

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
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SIO_000300: 1.09e0

ClippingRankSum
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SIO_000300: 1.84e0

InbreedingCoeff
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SIO_000300: 1.61e-2

MQ
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FS
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ReadPosRankSum
type: SiteQuality
SIO_000300: 9.78e-1

BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 4668
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 35972
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East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 7.272727272727272e-4
allele num: 5500
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Other
type: Population
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allele frequency: 0.0e0
allele num: 486
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South Asian
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allele frequency: 0.0e0
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MQ
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SIO_000300: 5.946e1

VQSLOD
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QD
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ReadPosRankSum
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InbreedingCoeff
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DP
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BaseQRankSum
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ClippingRankSum
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SIO_000300: 9.13e-1

MQRankSum
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FS
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SIO_000300: 1.714e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
allele num: 8458
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European (Finnish)
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 2
allele frequency: 5.663155510250311e-5
allele num: 35316
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 4572
num of homozygotes: 0

African
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allele frequency: 0.0e0
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FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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SIO_000300: -2.05e-2

DP
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VQSLOD
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QD
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MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
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ClippingRankSum
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SIO_000300: -4.67e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2652
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
allele num: 92
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East Asian
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allele frequency: 0.0e0
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South Asian
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allele num: 7444
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 118
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.766e1

MQRankSum
type: SiteQuality
SIO_000300: -9.88e-1

ClippingRankSum
type: SiteQuality
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ReadPosRankSum
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DP
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FS
type: SiteQuality
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InbreedingCoeff
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VQSLOD
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QD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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Other
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2662
num of homozygotes: 0

European (Finnish)
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allele frequency: NaN
allele num: 0
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South Asian
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allele frequency: 1.337613697164259e-4
allele num: 7476
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East Asian
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QD
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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MQ
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FS
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ClippingRankSum
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BaseQRankSum
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DP
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Non-Finnish)
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allele num: 2702
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Latino
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South Asian
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East Asian
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African
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allele frequency: 1.185567010309278e-1
allele num: 194
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European (Finnish)
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allele frequency: NaN
allele num: 0
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InbreedingCoeff
type: SiteQuality
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QD
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MQRankSum
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MQ
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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FS
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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Other
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Latino
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East Asian
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European (Non-Finnish)
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European (Finnish)
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ClippingRankSum
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FS
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MQ
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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QD
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ReadPosRankSum
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MQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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South Asian
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Other
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East Asian
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Latino
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European (Finnish)
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ReadPosRankSum
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MQ
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ClippingRankSum
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VQSLOD
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QD
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BaseQRankSum
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DP
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FS
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MQRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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allele frequency: 0.0e0
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Latino
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Other
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European (Finnish)
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European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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DP
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ClippingRankSum
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FS
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VQSLOD
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QD
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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MQ
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 7

GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 7
allele frequency: 9.325872635225154e-4
allele num: 7506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2728
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 192
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 134
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 118
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.32e0

FS
type: SiteQuality
SIO_000300: 9.491e0

QD
type: SiteQuality
SIO_000300: 1.149e1

MQRankSum
type: SiteQuality
SIO_000300: 1.07e0

MQ
type: SiteQuality
SIO_000300: 5.95e1

VQSLOD
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SIO_000300: -1.159e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.4e-1

DP
type: SiteQuality
SIO_000300: 1.72875e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.17e-2

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 134
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.332267519317879e-4
allele num: 7506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 118
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 3.663003663003663e-4
allele num: 2730
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 192
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.25e-2

VQSLOD
type: SiteQuality
SIO_000300: -3.693e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.62e0

DP
type: SiteQuality
SIO_000300: 1.7333e5

FS
type: SiteQuality
SIO_000300: 2.764e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.34e-1

MQ
type: SiteQuality
SIO_000300: 5.929e1

QD
type: SiteQuality
SIO_000300: 1.366e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2726
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 118
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South Asian
type: Population
allele count: 1
allele frequency: 1.332267519317879e-4
allele num: 7506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 134
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 192
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.877e1

MQRankSum
type: SiteQuality
SIO_000300: -6.41e-1

FS
type: SiteQuality
SIO_000300: 3.659e0

VQSLOD
type: SiteQuality
SIO_000300: -1.713e0

DP
type: SiteQuality
SIO_000300: 1.73644e5

ClippingRankSum
type: SiteQuality
SIO_000300: -1.257e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.38e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.4e-2

QD
type: SiteQuality
SIO_000300: 1.468e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 22
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GenotypeQuality
all individuals: 883
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2722
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 118
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.665245202558635e-4
allele num: 7504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 136
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.035e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.75176e5

VQSLOD
type: SiteQuality
SIO_000300: 2.03e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.664e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.61e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.05e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.99e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 531
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GenotypeQuality
all individuals: 1386
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 118
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2714
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 96
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 136
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.334400854016547e-4
allele num: 7494
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.71e-1

QD
type: SiteQuality
SIO_000300: 1.062e1

MQ
type: SiteQuality
SIO_000300: 5.892e1

MQRankSum
type: SiteQuality
SIO_000300: 6.42e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.04e0

DP
type: SiteQuality
SIO_000300: 1.77195e5

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.88e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.94e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 4.14e-1

GenotypeQuality
all individuals: 217
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1368
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 813
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 250
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 88
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GenotypeQuality
all individuals: 219
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 4
allele frequency: 2.985074626865672e-2
allele num: 134
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 118
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.334400854016547e-4
allele num: 7494
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 96
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2716
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.31e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.049999999999999e-2

FS
type: SiteQuality
SIO_000300: 2.066e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.8e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.44e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

MQRankSum
type: SiteQuality
SIO_000300: -1.49e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.43e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.534e0

DP
type: SiteQuality
SIO_000300: 1.77612e5

GenotypeQuality
all individuals: 13633
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 9.75e1
variant carriers: 3

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 299
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variant carriers: 0

GenotypeQuality
all individuals: 5833
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4738
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 3.733200597312096e-4
allele num: 8036
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4970
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.41858574911948e-5
allele num: 36910
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4046
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4000
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 492
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.233e0

DP
type: SiteQuality
SIO_000300: 6.51555e5

VQSLOD
type: SiteQuality
SIO_000300: 8.84e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.24e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -8.51e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.48e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.22e-1

QD
type: SiteQuality
SIO_000300: 1.518e1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4076
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.682403433476395e-5
allele num: 37280
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4096
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4774
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8154
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 500
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5002
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.16e0

DP
type: SiteQuality
SIO_000300: 6.75238e5

VQSLOD
type: SiteQuality
SIO_000300: -1.597e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.18e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.965e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.0e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.51e-1

QD
type: SiteQuality
SIO_000300: 5.64e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 5333
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 37550
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4116
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 506
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5042
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4130
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4826
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 3.632840881569387e-4
allele num: 8258
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.55e0

DP
type: SiteQuality
SIO_000300: 6.85024e5

MQRankSum
type: SiteQuality
SIO_000300: 2.53e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.15e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.15e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

QD
type: SiteQuality
SIO_000300: 1.084e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.05e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 38234
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4216
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 8470
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4224
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4952
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 514
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5156
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.2e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 7.21284e5

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.09e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.443e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8442
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 518
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 4992
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 38350
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4238
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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VQSLOD
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BaseQRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

FS
type: SiteQuality
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MQ
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 5.35e0

GenotypeQuality
all individuals: 728
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 400
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1205
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5548
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1181
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38818
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4268
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.96232339089482e-4
allele num: 5096
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4300
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 522
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5230
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.76e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -2.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.89e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-2

MQ
type: SiteQuality
SIO_000300: 5.485e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.33e-1

DP
type: SiteQuality
SIO_000300: 7.44592e5

QD
type: SiteQuality
SIO_000300: 1.553e1

GenotypeQuality
all individuals: 5456
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7155
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1107
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 449
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4342
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 528
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8806
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4416
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5310
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5210
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.538457633142103e-5
allele num: 39394
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -9.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.800000000000001e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 4.37e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.599999999999999e-2

QD
type: SiteQuality
SIO_000300: 1.483e1

DP
type: SiteQuality
SIO_000300: 7.63943e5

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.71e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.71e-1

GenotypeQuality
all individuals: 1353
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5362
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 374
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 983
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 528
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5338
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4428
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4346
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39544
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.133016088828461e-4
allele num: 8826
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5246
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.1e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.049e0

QD
type: SiteQuality
SIO_000300: 1.118e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 7.73117e5

VQSLOD
type: SiteQuality
SIO_000300: 3.04e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.367e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.68e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.4e-2

GenotypeQuality
all individuals: 4875
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 856
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 309
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 857
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14319
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 9.75e1
variant carriers: 5

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40732
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 550
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5498
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9012
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 6.57606313020605e-4
allele num: 4562
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5480
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.61e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.48e-1

FS
type: SiteQuality
SIO_000300: 3.198e0

DP
type: SiteQuality
SIO_000300: 8.20793e5

ClippingRankSum
type: SiteQuality
SIO_000300: -7.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.4e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.61e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.039e1

GenotypeQuality
all individuals: 697
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 287
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 327
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 582
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2144
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 686
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5668
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5766
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4736
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.376877733409393e-5
allele num: 42072
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9286
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 580
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.18e0

QD
type: SiteQuality
SIO_000300: 7.8e0

MQRankSum
type: SiteQuality
SIO_000300: -2.643e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 8.62076e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.99e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 3.6e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.6e-2

MQ
type: SiteQuality
SIO_000300: 5.889e1

GenotypeQuality
all individuals: 130
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 508
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 680
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 346
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 620
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2405
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18121
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5758
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4856
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 594
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9426
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.685203909673071e-4
allele num: 5934
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42706
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4724
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -6.703e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.792e0

DP
type: SiteQuality
SIO_000300: 8.76368e5

QD
type: SiteQuality
SIO_000300: 1.81e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.251e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.8e-3

MQ
type: SiteQuality
SIO_000300: 5.206e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.85e-1

GenotypeQuality
all individuals: 19781
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 915
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16987
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1115
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 637
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 626
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.325905940363772e-5
allele num: 42994
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5778
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4756
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6006
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9454
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 604
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.096e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.54e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.1e-3

QD
type: SiteQuality
SIO_000300: 1.293e1

VQSLOD
type: SiteQuality
SIO_000300: 1.04e0

MQRankSum
type: SiteQuality
SIO_000300: 1.01e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.506e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 8.86256e5

GenotypeQuality
all individuals: 551
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 413
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 300
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 797
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 697
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 680
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5060
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5942
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9708
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6264
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4886
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.270663033605813e-5
allele num: 44040
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.889999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.936e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 7.17e-1

DP
type: SiteQuality
SIO_000300: 9.17999e5

FS
type: SiteQuality
SIO_000300: 2.089e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.9e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.909999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.900000000000001e-3

QD
type: SiteQuality
SIO_000300: 1.372e1

GenotypeQuality
all individuals: 696
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19361
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 797
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 680
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 791
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 697
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44040
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 8.41467519353753e-4
allele num: 5942
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 610
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.030078285949732e-4
allele num: 9708
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6264
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4886
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.976284584980237e-4
allele num: 5060
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.372e1

VQSLOD
type: SiteQuality
SIO_000300: 7.17e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.9e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.889999999999999e-1

DP
type: SiteQuality
SIO_000300: 9.17999e5

ClippingRankSum
type: SiteQuality
SIO_000300: -6.909999999999999e-1

FS
type: SiteQuality
SIO_000300: 2.089e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.900000000000001e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.936e0

GenotypeQuality
all individuals: 18634
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2067
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 777
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variant carriers: 0

GenotypeQuality
all individuals: 552
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 772
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45212
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5018
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5230
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.6249593760156e-4
allele num: 6154
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.960159362549801e-5
allele num: 10040
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.3e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.15e0

QD
type: SiteQuality
SIO_000300: 1.454e1

VQSLOD
type: SiteQuality
SIO_000300: 4.03e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.22e0

DP
type: SiteQuality
SIO_000300: 9.40891e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.8e-1

GenotypeQuality
all individuals: 650
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 2.5e0
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GenotypeQuality
all individuals: 312
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 896
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 623
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1744
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3071
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6486
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7260
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10612
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5282
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5676
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.097315436241611e-5
allele num: 47680
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.225e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 6.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.6e-3

DP
type: SiteQuality
SIO_000300: 9.98602e5

ClippingRankSum
type: SiteQuality
SIO_000300: 7.7e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.22e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.86e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.148e0

GenotypeQuality
all individuals: 1074
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15223
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1583
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 646
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 989
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7850
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5982
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 678
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5458
num of homozygotes: 0

African
type: Population
allele count: 9
allele frequency: 1.335311572700297e-3
allele num: 6740
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11058
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.019549236610388e-5
allele num: 49516
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.239e0

MQRankSum
type: SiteQuality
SIO_000300: 1.51e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.77e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.18e-1

QD
type: SiteQuality
SIO_000300: 1.31e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.4e-2

DP
type: SiteQuality
SIO_000300: 1.04599e6

GenotypeQuality
all individuals: 163
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13475
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3956
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 360
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variant carriers: 0

GenotypeQuality
all individuals: 2177
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6444
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11748
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 718
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5716
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7232
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.911826559094559e-5
allele num: 52306
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.72e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.24e0

VQSLOD
type: SiteQuality
SIO_000300: -4.511e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.6e-3

MQRankSum
type: SiteQuality
SIO_000300: -4.33e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.500000000000001e-2

DP
type: SiteQuality
SIO_000300: 1.100502e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.472e0

GenotypeQuality
all individuals: 121
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 545
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2115
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1331
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1239
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 685
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 348
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 765
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 285
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 718
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8780
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6516
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.68321831341525e-4
allele num: 11882
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 52792
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7326
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5758
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 9.67e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.224e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.52e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.51e-1

DP
type: SiteQuality
SIO_000300: 1.114025e6

ClippingRankSum
type: SiteQuality
SIO_000300: 7.6e-2

GenotypeQuality
all individuals: 1732
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 577
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 310
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 317
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1381
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 989
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 473
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32334
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5926
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 736
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7642
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9418
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6930
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.823287021842978e-5
allele num: 54846
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12490
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.325e0

VQSLOD
type: SiteQuality
SIO_000300: 1.43e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.25e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.799999999999999e-2

FS
type: SiteQuality
SIO_000300: 3.485e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.25e0

QD
type: SiteQuality
SIO_000300: 1.39e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

DP
type: SiteQuality
SIO_000300: 1.161408e6

GenotypeQuality
all individuals: 946
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 465
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 362
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34179
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variant carriers: 0

GenotypeQuality
all individuals: 378
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variant carriers: 1

GenotypeQuality
all individuals: 1765
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variant carriers: 0

GenotypeQuality
all individuals: 435
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variant carriers: 0

GenotypeQuality
all individuals: 606
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variant carriers: 0

GenotypeQuality
all individuals: 1106
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 367
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 772
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6112
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13142
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8092
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10014
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7278
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.747823959170832e-5
allele num: 57214
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.24e-1

QD
type: SiteQuality
SIO_000300: 1.03e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.97e0

MQRankSum
type: SiteQuality
SIO_000300: 6.58e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.847e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.1e0

DP
type: SiteQuality
SIO_000300: 1.217797e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 378
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 404
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 35322
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 385
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1859
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1163
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8526
bin: 2.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13410
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8192
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10182
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7378
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.72717537738782e-5
allele num: 57898
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 778
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6154
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.41e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.11e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.93e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.3e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.313e0

DP
type: SiteQuality
SIO_000300: 1.230557e6

QD
type: SiteQuality
SIO_000300: 1.589e1

GenotypeQuality
all individuals: 611
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 80
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 892
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5644
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1318
bin: 8.25e1
variant carriers: 3

GenotypeQuality
all individuals: 756
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 730
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 972
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 425
bin: 8.75e1
variant carriers: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7816
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3
allele frequency: 4.719949653870359e-4
allele num: 6356
num of homozygotes: 0

South Asian
type: Population
allele count: 257
allele frequency: 1.801233529576675e-2
allele num: 14268
num of homozygotes: 4

Latino
type: Population
allele count: 23
allele frequency: 2.128053293856403e-3
allele num: 10808
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 285
allele frequency: 4.683802261372601e-3
allele num: 60848
num of homozygotes: 0

African
type: Population
allele count: 9
allele frequency: 1.031873423526714e-3
allele num: 8722
num of homozygotes: 0

Other
type: Population
allele count: 6
allele frequency: 7.371007371007371e-3
allele num: 814
num of homozygotes: 1

MQRankSum
type: SiteQuality
SIO_000300: 1.63e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.549e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.19e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.305692e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.0e-3

FS
type: SiteQuality
SIO_000300: 2.081e0

VQSLOD
type: SiteQuality
SIO_000300: 3.64e0

QD
type: SiteQuality
SIO_000300: 1.358e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 308
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6038
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 778
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 513
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2203
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variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1376
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 8.116092588384248e-5
allele num: 61606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7922
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8904
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.75330396475771e-4
allele num: 14528
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6392
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10930
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.67e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.41e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.79e0

QD
type: SiteQuality
SIO_000300: 1.376e1

DP
type: SiteQuality
SIO_000300: 1.322885e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.87e-1

FS
type: SiteQuality
SIO_000300: 1.441e0

MQRankSum
type: SiteQuality
SIO_000300: -1.44e-1

GenotypeQuality
all individuals: 1942
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 890
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2203
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variant carriers: 0

GenotypeQuality
all individuals: 1376
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6038
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 778
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variant carriers: 0

GenotypeQuality
all individuals: 628
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5048
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6392
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7922
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8904
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61606
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.149130832570906e-5
allele num: 10930
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14528
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.44e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.79e0

FS
type: SiteQuality
SIO_000300: 1.441e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

QD
type: SiteQuality
SIO_000300: 1.376e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.41e-1

DP
type: SiteQuality
SIO_000300: 1.322885e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.87e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.67e0

GenotypeQuality
all individuals: 494
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
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GenotypeQuality
all individuals: 487
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2034
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variant carriers: 0

GenotypeQuality
all individuals: 2330
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 495
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GenotypeQuality
all individuals: 526
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GenotypeQuality
all individuals: 282
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1459
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62840
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.226993865030675e-4
allele num: 8150
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9160
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6464
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14984
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11198
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.354223e6

BaseQRankSum
type: SiteQuality
SIO_000300: -5.528e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.453e-1

QD
type: SiteQuality
SIO_000300: 1.113e1

MQRankSum
type: SiteQuality
SIO_000300: 1.13e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.524e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.32e0

GenotypeQuality
all individuals: 590
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3083
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 535
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6471
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 503
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2086
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 333
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 500
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9284
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.573762236001385e-5
allele num: 63542
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15168
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8236
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11276
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6494
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.466e0

DP
type: SiteQuality
SIO_000300: 1.369639e6

QD
type: SiteQuality
SIO_000300: 1.622e1

FS
type: SiteQuality
SIO_000300: 2.7075e1

MQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.23e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.900000000000001e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.07e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e-1

GenotypeQuality
all individuals: 42
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 363
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 521
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3083
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2390
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 500
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40268
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 358
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.077121930202499e-4
allele num: 9284
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15168
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8236
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11276
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6494
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.14752447200277e-5
allele num: 63542
num of homozygotes: 1

QD
type: SiteQuality
SIO_000300: 1.622e1

VQSLOD
type: SiteQuality
SIO_000300: -3.466e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.900000000000001e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -5.23e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.07e-2

FS
type: SiteQuality
SIO_000300: 2.7075e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

DP
type: SiteQuality
SIO_000300: 1.369639e6

GenotypeQuality
all individuals: 6671
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 509
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 527
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2444
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 348
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 499
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 450
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 3
allele frequency: 2.649240551042035e-4
allele num: 11324
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15418
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6522
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.194207836456559e-4
allele num: 9392
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8332
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.805913760264776e-5
allele num: 64054
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.71e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.72e-1

MQ
type: SiteQuality
SIO_000300: 5.969e1

FS
type: SiteQuality
SIO_000300: 2.146e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.7e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.63e0

QD
type: SiteQuality
SIO_000300: 1.349e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.47e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

DP
type: SiteQuality
SIO_000300: 1.381497e6

GenotypeQuality
all individuals: 232
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2490
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 525
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41966
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1574
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 545
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15690
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.180637544273908e-4
allele num: 8470
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11420
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64728
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.533e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.28e0

DP
type: SiteQuality
SIO_000300: 1.401898e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.06e0

MQRankSum
type: SiteQuality
SIO_000300: 3.0e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.36e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.8e-1

GenotypeQuality
all individuals: 238
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 536
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2521
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6883
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1691
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 562
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64870
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9522
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.745845723281441e-5
allele num: 11434
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15768
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8486
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.45e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.73e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 2.128e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.3e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.46e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.0e0

DP
type: SiteQuality
SIO_000300: 1.406227e6

GenotypeQuality
all individuals: 110
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 562
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6932
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42288
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 541
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1616
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15816
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.046243984097091e-4
allele num: 9558
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.227362204724409e-5
allele num: 65024
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11456
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8498
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

VQSLOD
type: SiteQuality
SIO_000300: 5.15e0

MQ
type: SiteQuality
SIO_000300: 6.039e1

DP
type: SiteQuality
SIO_000300: 1.409739e6

MQRankSum
type: SiteQuality
SIO_000300: 4.83e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.73e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.3e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.685e1

GenotypeQuality
all individuals: 1669
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 773
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7142
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 577
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variant carriers: 0

GenotypeQuality
all individuals: 545
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 591
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16250
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65780
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.167133520074697e-4
allele num: 8568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9672
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.245e0

MQRankSum
type: SiteQuality
SIO_000300: -8.699999999999999e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.501e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.08e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

VQSLOD
type: SiteQuality
SIO_000300: 7.49e-1

QD
type: SiteQuality
SIO_000300: 1.062e1

DP
type: SiteQuality
SIO_000300: 1.432079e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.32e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 168
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1669
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 773
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7142
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 591
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 577
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43176
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65780
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9672
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.846153846153846e-4
allele num: 16250
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.08e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

DP
type: SiteQuality
SIO_000300: 1.432079e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -8.699999999999999e-2

FS
type: SiteQuality
SIO_000300: 3.245e0

QD
type: SiteQuality
SIO_000300: 1.062e1

VQSLOD
type: SiteQuality
SIO_000300: 7.49e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.501e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.32e-1

GenotypeQuality
all individuals: 146
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2627
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 694
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7182
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43440
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1677
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 554
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.036467980445146e-5
allele num: 65866
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16292
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.682062858135092e-5
allele num: 11518
num of homozygotes: 0

African
type: Population
allele count: 31
allele frequency: 3.196535368117137e-3
allele num: 9698
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.21e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 3.4e0

MQRankSum
type: SiteQuality
SIO_000300: 7.000000000000001e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.5e-1

QD
type: SiteQuality
SIO_000300: 1.388e1

DP
type: SiteQuality
SIO_000300: 1.434837e6

VQSLOD
type: SiteQuality
SIO_000300: 5.91e0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2656
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 615
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 43733
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 586
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7229
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variant carriers: 0

GenotypeQuality
all individuals: 2345
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16392
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9720
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.56475429678044e-5
allele num: 66096
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.979e1

VQSLOD
type: SiteQuality
SIO_000300: 2.41e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.425e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.707e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.32e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQRankSum
type: SiteQuality
SIO_000300: 4.09e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.48e-1

DP
type: SiteQuality
SIO_000300: 1.440151e6

GenotypeQuality
all individuals: 2639
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 544
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2327
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43560
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 580
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1669
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 911
bin: 9.75e1
variant carriers: 308

East Asian
type: Population
allele count: 1
allele frequency: 1.165229550221394e-4
allele num: 8582
num of homozygotes: 0

Latino
type: Population
allele count: 36
allele frequency: 3.118503118503119e-3
allele num: 11544
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 3.36322869955157e-3
allele num: 892
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 248
allele frequency: 3.749735401735765e-3
allele num: 66138
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 6.172839506172839e-4
allele num: 9720
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 9
allele frequency: 1.361985472154964e-3
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.047294002925402e-4
allele num: 16408
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.267e0

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.29e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.08e-1

QD
type: SiteQuality
SIO_000300: 1.395e1

MQ
type: SiteQuality
SIO_000300: 5.978e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.17e-1

DP
type: SiteQuality
SIO_000300: 1.454418e6

GenotypeQuality
all individuals: 51
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 734
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2338
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1693
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 595
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.511030522816561e-5
allele num: 66180
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9724
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16436
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.570000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.17e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.2e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.28e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e0

FS
type: SiteQuality
SIO_000300: 1.297e0

DP
type: SiteQuality
SIO_000300: 1.448779e6

QD
type: SiteQuality
SIO_000300: 1.205e1

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2667
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2348
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 736
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 69
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7283
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.016500256402522e-5
allele num: 66302
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9740
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.401e1

FS
type: SiteQuality
SIO_000300: 8.99e-1

DP
type: SiteQuality
SIO_000300: 1.452128e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.64e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.29e0

MQ
type: SiteQuality
SIO_000300: 5.95e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.377e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.89e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

GenotypeQuality
all individuals: 28
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 577
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2355
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2676
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 738
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7299
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9748
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506886471173262e-5
allele num: 66362
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.927e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 4.96e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.7e-2

FS
type: SiteQuality
SIO_000300: 2.946e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.766e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.92e0

DP
type: SiteQuality
SIO_000300: 1.452829e6

QD
type: SiteQuality
SIO_000300: 1.674e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.42e0

GenotypeQuality
all individuals: 51
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43930
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 739
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7301
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2676
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 576
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506568639267205e-5
allele num: 66376
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9748
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.62e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.95e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.13e0

DP
type: SiteQuality
SIO_000300: 1.45325e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 9.016999999999999e0

QD
type: SiteQuality
SIO_000300: 1.253e1

MQRankSum
type: SiteQuality
SIO_000300: 9.4e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -7.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7345
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2685
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2373
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211680600993578e-4
allele num: 16506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9774
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.354e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.7e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.91e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.25e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.58e-1

QD
type: SiteQuality
SIO_000300: 1.132e1

FS
type: SiteQuality
SIO_000300: 4.772e0

DP
type: SiteQuality
SIO_000300: 1.456369e6

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2377
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44135
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 577
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 605
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1712
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 748
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 7367
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9790
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.002552169343942e-5
allele num: 66610
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.17e-1

DP
type: SiteQuality
SIO_000300: 1.458312e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.563e0

MQ
type: SiteQuality
SIO_000300: 5.961e1

VQSLOD
type: SiteQuality
SIO_000300: 1.88e0

MQRankSum
type: SiteQuality
SIO_000300: 3.54e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.19e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.5e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

QD
type: SiteQuality
SIO_000300: 1.233e1

GenotypeQuality
all individuals: 44147
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2690
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 577
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 605
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9788
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.457216940363008e-4
allele num: 11570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66622
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.973e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 3.15e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.435e0

DP
type: SiteQuality
SIO_000300: 1.458701e6

FS
type: SiteQuality
SIO_000300: 7.868e0

MQRankSum
type: SiteQuality
SIO_000300: -6.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.9e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.71e-1

QD
type: SiteQuality
SIO_000300: 1.2e1

GenotypeQuality
all individuals: 44135
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2376
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7368
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 578
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1711
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2690
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.064977523498161e-4
allele num: 9788
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.16144018583043e-4
allele num: 8610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50105073551486e-5
allele num: 66620
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.59e0

QD
type: SiteQuality
SIO_000300: 1.324e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.46e0

MQ
type: SiteQuality
SIO_000300: 5.952e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.38e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.75e-1

FS
type: SiteQuality
SIO_000300: 6.6e-1

DP
type: SiteQuality
SIO_000300: 1.458795e6

GenotypeQuality
all individuals: 96
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 44135
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2690
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 578
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2376
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7368
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 605
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66620
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9788
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.324e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.38e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.46e0

FS
type: SiteQuality
SIO_000300: 6.6e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.75e-1

MQ
type: SiteQuality
SIO_000300: 5.952e1

VQSLOD
type: SiteQuality
SIO_000300: 3.59e0

DP
type: SiteQuality
SIO_000300: 1.458795e6

GenotypeQuality
all individuals: 578
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44145
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 753
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2691
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2382
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9788
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66628
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.8e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.400000000000001e-2

DP
type: SiteQuality
SIO_000300: 1.458832e6

VQSLOD
type: SiteQuality
SIO_000300: 1.28e0

MQ
type: SiteQuality
SIO_000300: 5.972e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.81e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.99e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.57e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.065e1

GenotypeQuality
all individuals: 110
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 605
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2380
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2695
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 755
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7370
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9792
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499880009599232e-5
allele num: 66672
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.2e0

VQSLOD
type: SiteQuality
SIO_000300: -2.033e-1

QD
type: SiteQuality
SIO_000300: 1.586e1

MQRankSum
type: SiteQuality
SIO_000300: -1.344e0

FS
type: SiteQuality
SIO_000300: 6.14e-1

MQ
type: SiteQuality
SIO_000300: 5.989e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.321e0

DP
type: SiteQuality
SIO_000300: 1.459409e6

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44155
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2693
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 605
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66670
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160631383472609e-4
allele num: 8616
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9792
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e0

DP
type: SiteQuality
SIO_000300: 1.459535e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.006e0

FS
type: SiteQuality
SIO_000300: 5.8e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.5e0

QD
type: SiteQuality
SIO_000300: 1.511e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.293e0

MQRankSum
type: SiteQuality
SIO_000300: -1.27e-1

MQ
type: SiteQuality
SIO_000300: 5.955e1

GenotypeQuality
all individuals: 9
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7375
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44158
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 757
bin: 9.75e1
variant carriers: 2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.999850007499625e-5
allele num: 66670
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.479e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.7e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.49e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.51e-1

MQ
type: SiteQuality
SIO_000300: 5.959e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 6.97e-1

DP
type: SiteQuality
SIO_000300: 1.459806e6

QD
type: SiteQuality
SIO_000300: 1.227e1

GenotypeQuality
all individuals: 18
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2692
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7370
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 764
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 44127
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 577
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9804
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.350256548744261e-4
allele num: 66654
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.460536e6

MQRankSum
type: SiteQuality
SIO_000300: 9.68e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.16e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.96e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.24e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.089e0

QD
type: SiteQuality
SIO_000300: 1.226e1

FS
type: SiteQuality
SIO_000300: 5.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.72e-1

GenotypeQuality
all individuals: 607
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2369
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7277
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1706
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2680
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.195019204559534e-5
allele num: 16142
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160092807424594e-4
allele num: 8620
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66538
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.359e0

MQRankSum
type: SiteQuality
SIO_000300: 1.38e-1

MQ
type: SiteQuality
SIO_000300: 5.935e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.6e0

VQSLOD
type: SiteQuality
SIO_000300: 1.53e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.822e0

QD
type: SiteQuality
SIO_000300: 1.112e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

FS
type: SiteQuality
SIO_000300: 1.11e0

DP
type: SiteQuality
SIO_000300: 1.451439e6