19-49954582-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49954582
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49954582
    reference: chr 19
allele count: 5
allele frequency: 2.496006389776358e-4
allele num: 20032
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000262265
  ensembl transcript: ENST00000262265
  gene symbol: PIH1D1
  hgvsc: ENST00000262265.5:c.90+160C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000471275
  ensembl transcript: ENST00000601825
  gene symbol: PIH1D1
  hgvsc: ENST00000601825.1:c.90+160C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469693
  ensembl transcript: ENST00000601807
  gene symbol: PIH1D1
  hgvsc: ENST00000601807.1:c.57+43C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000470445
  ensembl transcript: ENST00000596049
  gene symbol: PIH1D1
  hgvsc: ENST00000596049.1:c.90+160C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000472571
  ensembl transcript: ENST00000595550
  gene symbol: PIH1D1
  hgvsc: ENST00000595550.1:c.57+43C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595516
  gene symbol: PIH1D1
  hgvsc: ENST00000595516.1:n.316+160C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000593900
  gene symbol: PIH1D1
  hgvsc: ENST00000593900.1:n.333+160C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000599791
  gene symbol: PIH1D1
  hgvsc: ENST00000599791.1:n.264+160C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469087
  ensembl transcript: ENST00000599366
  gene symbol: PIH1D1
  hgvsc: ENST00000599366.1:c.90+160C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469793
  ensembl transcript: ENST00000597415
  gene symbol: PIH1D1
  hgvsc: ENST00000597415.1:c.57+43C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595074
  gene symbol: PIH1D1
  hgvsc: ENST00000595074.1:n.307+160C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000473100
  ensembl transcript: ENST00000601053
  gene symbol: PIH1D1
  hgvsc: ENST00000601053.1:c.46+160C>T
  variant of: http://identifiers.org/hgnc/26075
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21683
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8190
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26286
  bin: 7.5e0
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Other
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP

19-49954583-G-GC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49954583
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49954584
    reference: chr 19
allele count: 42
allele frequency: 2.091633466135458e-3
allele num: 20080
alternate allele: GC
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595074
  gene symbol: PIH1D1
  hgvsc: ENST00000595074.1:n.307+158dupG
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000472571
  ensembl transcript: ENST00000595550
  gene symbol: PIH1D1
  hgvsc: ENST00000595550.1:c.57+41dupG
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469793
  ensembl transcript: ENST00000597415
  gene symbol: PIH1D1
  hgvsc: ENST00000597415.1:c.57+41dupG
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595516
  gene symbol: PIH1D1
  hgvsc: ENST00000595516.1:n.316+158dupG
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000470445
  ensembl transcript: ENST00000596049
  gene symbol: PIH1D1
  hgvsc: ENST00000596049.1:c.90+158dupG
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000262265
  ensembl transcript: ENST00000262265
  gene symbol: PIH1D1
  hgvsc: ENST00000262265.5:c.90+158dupG
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469087
  ensembl transcript: ENST00000599366
  gene symbol: PIH1D1
  hgvsc: ENST00000599366.1:c.90+158dupG
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000471275
  ensembl transcript: ENST00000601825
  gene symbol: PIH1D1
  hgvsc: ENST00000601825.1:c.90+158dupG
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469693
  ensembl transcript: ENST00000601807
  gene symbol: PIH1D1
  hgvsc: ENST00000601807.1:c.57+41dupG
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000599791
  gene symbol: PIH1D1
  hgvsc: ENST00000599791.1:n.264+158dupG
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000593900
  gene symbol: PIH1D1
  hgvsc: ENST00000593900.1:n.333+158dupG
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000473100
  ensembl transcript: ENST00000601053
  gene symbol: PIH1D1
  hgvsc: ENST00000601053.1:c.46+158dupG
  variant of: http://identifiers.org/hgnc/26075
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26501
  bin: 7.5e0
  variant carriers: 73
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8278
  bin: 1.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 21351
  bin: 2.5e0
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1458
  bin: 1.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: Latino
population: South Asian
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQ

http://identifiers.org/exac.variant/19-49954587-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49954587
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49954587
    reference: chr 19
allele count: 1
allele frequency: 4.557054320087495e-5
allele num: 21944
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000593900
  gene symbol: PIH1D1
  hgvsc: ENST00000593900.1:n.333+155G>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469693
  ensembl transcript: ENST00000601807
  gene symbol: PIH1D1
  hgvsc: ENST00000601807.1:c.57+38G>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469087
  ensembl transcript: ENST00000599366
  gene symbol: PIH1D1
  hgvsc: ENST00000599366.1:c.90+155G>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469793
  ensembl transcript: ENST00000597415
  gene symbol: PIH1D1
  hgvsc: ENST00000597415.1:c.57+38G>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000599791
  gene symbol: PIH1D1
  hgvsc: ENST00000599791.1:n.264+155G>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000471275
  ensembl transcript: ENST00000601825
  gene symbol: PIH1D1
  hgvsc: ENST00000601825.1:c.90+155G>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000470445
  ensembl transcript: ENST00000596049
  gene symbol: PIH1D1
  hgvsc: ENST00000596049.1:c.90+155G>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595516
  gene symbol: PIH1D1
  hgvsc: ENST00000595516.1:n.316+155G>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000473100
  ensembl transcript: ENST00000601053
  gene symbol: PIH1D1
  hgvsc: ENST00000601053.1:c.46+155G>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000262265
  ensembl transcript: ENST00000262265
  gene symbol: PIH1D1
  hgvsc: ENST00000262265.5:c.90+155G>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000472571
  ensembl transcript: ENST00000595550
  gene symbol: PIH1D1
  hgvsc: ENST00000595550.1:c.57+38G>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595074
  gene symbol: PIH1D1
  hgvsc: ENST00000595074.1:n.307+155G>T
  variant of: http://identifiers.org/hgnc/26075
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 28176
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8504
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19331
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/19-49954590-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49954590
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49954590
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 22742
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595074
  gene symbol: PIH1D1
  hgvsc: ENST00000595074.1:n.307+152T>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469793
  ensembl transcript: ENST00000597415
  gene symbol: PIH1D1
  hgvsc: ENST00000597415.1:c.57+35T>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000470445
  ensembl transcript: ENST00000596049
  gene symbol: PIH1D1
  hgvsc: ENST00000596049.1:c.90+152T>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000262265
  ensembl transcript: ENST00000262265
  gene symbol: PIH1D1
  hgvsc: ENST00000262265.5:c.90+152T>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000473100
  ensembl transcript: ENST00000601053
  gene symbol: PIH1D1
  hgvsc: ENST00000601053.1:c.46+152T>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469693
  ensembl transcript: ENST00000601807
  gene symbol: PIH1D1
  hgvsc: ENST00000601807.1:c.57+35T>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595516
  gene symbol: PIH1D1
  hgvsc: ENST00000595516.1:n.316+152T>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000593900
  gene symbol: PIH1D1
  hgvsc: ENST00000593900.1:n.333+152T>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000471275
  ensembl transcript: ENST00000601825
  gene symbol: PIH1D1
  hgvsc: ENST00000601825.1:c.90+152T>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000472571
  ensembl transcript: ENST00000595550
  gene symbol: PIH1D1
  hgvsc: ENST00000595550.1:c.57+35T>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469087
  ensembl transcript: ENST00000599366
  gene symbol: PIH1D1
  hgvsc: ENST00000599366.1:c.90+152T>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000599791
  gene symbol: PIH1D1
  hgvsc: ENST00000599791.1:n.264+152T>G
  variant of: http://identifiers.org/hgnc/26075
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1856
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29519
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8564
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17662
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum

19-49954599-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49954599
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49954599
    reference: chr 19
allele count: 1
allele frequency: 3.689220098871098e-5
allele num: 27106
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000472571
  ensembl transcript: ENST00000595550
  gene symbol: PIH1D1
  hgvsc: ENST00000595550.1:c.57+26A>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469087
  ensembl transcript: ENST00000599366
  gene symbol: PIH1D1
  hgvsc: ENST00000599366.1:c.90+143A>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595516
  gene symbol: PIH1D1
  hgvsc: ENST00000595516.1:n.316+143A>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000473100
  ensembl transcript: ENST00000601053
  gene symbol: PIH1D1
  hgvsc: ENST00000601053.1:c.46+143A>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469793
  ensembl transcript: ENST00000597415
  gene symbol: PIH1D1
  hgvsc: ENST00000597415.1:c.57+26A>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595074
  gene symbol: PIH1D1
  hgvsc: ENST00000595074.1:n.307+143A>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000599791
  gene symbol: PIH1D1
  hgvsc: ENST00000599791.1:n.264+143A>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000470445
  ensembl transcript: ENST00000596049
  gene symbol: PIH1D1
  hgvsc: ENST00000596049.1:c.90+143A>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469693
  ensembl transcript: ENST00000601807
  gene symbol: PIH1D1
  hgvsc: ENST00000601807.1:c.57+26A>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000593900
  gene symbol: PIH1D1
  hgvsc: ENST00000593900.1:n.333+143A>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000262265
  ensembl transcript: ENST00000262265
  gene symbol: PIH1D1
  hgvsc: ENST00000262265.5:c.90+143A>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000471275
  ensembl transcript: ENST00000601825
  gene symbol: PIH1D1
  hgvsc: ENST00000601825.1:c.90+143A>G
  variant of: http://identifiers.org/hgnc/26075
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33216
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12563
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7727
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4721
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

19-49954629-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49954629
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49954629
    reference: chr 19
allele count: 1
allele frequency: 1.321597547114953e-5
allele num: 75666
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000472571
  ensembl transcript: ENST00000595550
  gene symbol: PIH1D1
  hgvsc: ENST00000595550.1:c.53T>C
  hgvsp: ENSP00000472571.1:p.Ile18Thr
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000471275
  ensembl transcript: ENST00000601825
  gene symbol: PIH1D1
  hgvsc: ENST00000601825.1:c.90+113T>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595074
  gene symbol: PIH1D1
  hgvsc: ENST00000595074.1:n.307+113T>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000473100
  ensembl transcript: ENST00000601053
  gene symbol: PIH1D1
  hgvsc: ENST00000601053.1:c.46+113T>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000262265
  ensembl transcript: ENST00000262265
  gene symbol: PIH1D1
  hgvsc: ENST00000262265.5:c.90+113T>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595516
  gene symbol: PIH1D1
  hgvsc: ENST00000595516.1:n.316+113T>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469793
  ensembl transcript: ENST00000597415
  gene symbol: PIH1D1
  hgvsc: ENST00000597415.1:c.53T>C
  hgvsp: ENSP00000469793.1:p.Ile18Thr
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469087
  ensembl transcript: ENST00000599366
  gene symbol: PIH1D1
  hgvsc: ENST00000599366.1:c.90+113T>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469693
  ensembl transcript: ENST00000601807
  gene symbol: PIH1D1
  hgvsc: ENST00000601807.1:c.53T>C
  hgvsp: ENSP00000469693.1:p.Ile18Thr
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000470445
  ensembl transcript: ENST00000596049
  gene symbol: PIH1D1
  hgvsc: ENST00000596049.1:c.90+113T>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000593900
  gene symbol: PIH1D1
  hgvsc: ENST00000593900.1:n.333+113T>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000599791
  gene symbol: PIH1D1
  hgvsc: ENST00000599791.1:n.264+113T>C
  variant of: http://identifiers.org/hgnc/26075
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29508
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3072
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3411
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2452
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19927
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile18Thr
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/19-49954632-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49954632
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49954632
    reference: chr 19
allele count: 1
allele frequency: 1.228652168571077e-5
allele num: 81390
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000471275
  ensembl transcript: ENST00000601825
  gene symbol: PIH1D1
  hgvsc: ENST00000601825.1:c.90+110G>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469693
  ensembl transcript: ENST00000601807
  gene symbol: PIH1D1
  hgvsc: ENST00000601807.1:c.50G>T
  hgvsp: ENSP00000469693.1:p.Gly17Val
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000599791
  gene symbol: PIH1D1
  hgvsc: ENST00000599791.1:n.264+110G>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595074
  gene symbol: PIH1D1
  hgvsc: ENST00000595074.1:n.307+110G>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000472571
  ensembl transcript: ENST00000595550
  gene symbol: PIH1D1
  hgvsc: ENST00000595550.1:c.50G>T
  hgvsp: ENSP00000472571.1:p.Gly17Val
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000262265
  ensembl transcript: ENST00000262265
  gene symbol: PIH1D1
  hgvsc: ENST00000262265.5:c.90+110G>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000593900
  gene symbol: PIH1D1
  hgvsc: ENST00000593900.1:n.333+110G>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469793
  ensembl transcript: ENST00000597415
  gene symbol: PIH1D1
  hgvsc: ENST00000597415.1:c.50G>T
  hgvsp: ENSP00000469793.1:p.Gly17Val
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469087
  ensembl transcript: ENST00000599366
  gene symbol: PIH1D1
  hgvsc: ENST00000599366.1:c.90+110G>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000473100
  ensembl transcript: ENST00000601053
  gene symbol: PIH1D1
  hgvsc: ENST00000601053.1:c.46+110G>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595516
  gene symbol: PIH1D1
  hgvsc: ENST00000595516.1:n.316+110G>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000470445
  ensembl transcript: ENST00000596049
  gene symbol: PIH1D1
  hgvsc: ENST00000596049.1:c.90+110G>T
  variant of: http://identifiers.org/hgnc/26075
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3520
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17488
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32224
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2055
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3022
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly17Val
num of homozygotes: 0
population: Other
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

19-49954636-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49954636
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49954636
    reference: chr 19
allele count: 2
allele frequency: 2.191348555901302e-5
allele num: 91268
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469693
  ensembl transcript: ENST00000601807
  gene symbol: PIH1D1
  hgvsc: ENST00000601807.1:c.46C>T
  hgvsp: ENSP00000469693.1:p.Arg16Trp
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595516
  gene symbol: PIH1D1
  hgvsc: ENST00000595516.1:n.316+106C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000593900
  gene symbol: PIH1D1
  hgvsc: ENST00000593900.1:n.333+106C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000471275
  ensembl transcript: ENST00000601825
  gene symbol: PIH1D1
  hgvsc: ENST00000601825.1:c.90+106C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469793
  ensembl transcript: ENST00000597415
  gene symbol: PIH1D1
  hgvsc: ENST00000597415.1:c.46C>T
  hgvsp: ENSP00000469793.1:p.Arg16Trp
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000472571
  ensembl transcript: ENST00000595550
  gene symbol: PIH1D1
  hgvsc: ENST00000595550.1:c.46C>T
  hgvsp: ENSP00000472571.1:p.Arg16Trp
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000599791
  gene symbol: PIH1D1
  hgvsc: ENST00000599791.1:n.264+106C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000473100
  ensembl transcript: ENST00000601053
  gene symbol: PIH1D1
  hgvsc: ENST00000601053.1:c.46+106C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595074
  gene symbol: PIH1D1
  hgvsc: ENST00000595074.1:n.307+106C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000470445
  ensembl transcript: ENST00000596049
  gene symbol: PIH1D1
  hgvsc: ENST00000596049.1:c.90+106C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000262265
  ensembl transcript: ENST00000262265
  gene symbol: PIH1D1
  hgvsc: ENST00000262265.5:c.90+106C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469087
  ensembl transcript: ENST00000599366
  gene symbol: PIH1D1
  hgvsc: ENST00000599366.1:c.90+106C>T
  variant of: http://identifiers.org/hgnc/26075
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2320
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13316
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4515
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1656
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36319
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Arg16Trp
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS

19-49954644-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49954644
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49954644
    reference: chr 19
allele count: 1
allele frequency: 9.911785112498762e-6
allele num: 100890
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469693
  ensembl transcript: ENST00000601807
  gene symbol: PIH1D1
  hgvsc: ENST00000601807.1:c.38C>G
  hgvsp: ENSP00000469693.1:p.Thr13Ser
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469793
  ensembl transcript: ENST00000597415
  gene symbol: PIH1D1
  hgvsc: ENST00000597415.1:c.38C>G
  hgvsp: ENSP00000469793.1:p.Thr13Ser
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000599791
  gene symbol: PIH1D1
  hgvsc: ENST00000599791.1:n.264+98C>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000470445
  ensembl transcript: ENST00000596049
  gene symbol: PIH1D1
  hgvsc: ENST00000596049.1:c.90+98C>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000472571
  ensembl transcript: ENST00000595550
  gene symbol: PIH1D1
  hgvsc: ENST00000595550.1:c.38C>G
  hgvsp: ENSP00000472571.1:p.Thr13Ser
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000262265
  ensembl transcript: ENST00000262265
  gene symbol: PIH1D1
  hgvsc: ENST00000262265.5:c.90+98C>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000473100
  ensembl transcript: ENST00000601053
  gene symbol: PIH1D1
  hgvsc: ENST00000601053.1:c.46+98C>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595074
  gene symbol: PIH1D1
  hgvsc: ENST00000595074.1:n.307+98C>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000471275
  ensembl transcript: ENST00000601825
  gene symbol: PIH1D1
  hgvsc: ENST00000601825.1:c.90+98C>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000593900
  gene symbol: PIH1D1
  hgvsc: ENST00000593900.1:n.333+98C>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595516
  gene symbol: PIH1D1
  hgvsc: ENST00000595516.1:n.316+98C>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469087
  ensembl transcript: ENST00000599366
  gene symbol: PIH1D1
  hgvsc: ENST00000599366.1:c.90+98C>G
  variant of: http://identifiers.org/hgnc/26075
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1774
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5650
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9263
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39865
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2279
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr13Ser
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff

19-49954644-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49954644
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49954644
    reference: chr 19
allele count: 7
allele frequency: 6.938249578749132e-5
allele num: 100890
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000593900
  gene symbol: PIH1D1
  hgvsc: ENST00000593900.1:n.333+98C>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000599791
  gene symbol: PIH1D1
  hgvsc: ENST00000599791.1:n.264+98C>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469793
  ensembl transcript: ENST00000597415
  gene symbol: PIH1D1
  hgvsc: ENST00000597415.1:c.38C>A
  hgvsp: ENSP00000469793.1:p.Thr13Asn
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469087
  ensembl transcript: ENST00000599366
  gene symbol: PIH1D1
  hgvsc: ENST00000599366.1:c.90+98C>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000471275
  ensembl transcript: ENST00000601825
  gene symbol: PIH1D1
  hgvsc: ENST00000601825.1:c.90+98C>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595074
  gene symbol: PIH1D1
  hgvsc: ENST00000595074.1:n.307+98C>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469693
  ensembl transcript: ENST00000601807
  gene symbol: PIH1D1
  hgvsc: ENST00000601807.1:c.38C>A
  hgvsp: ENSP00000469693.1:p.Thr13Asn
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000472571
  ensembl transcript: ENST00000595550
  gene symbol: PIH1D1
  hgvsc: ENST00000595550.1:c.38C>A
  hgvsp: ENSP00000472571.1:p.Thr13Asn
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595516
  gene symbol: PIH1D1
  hgvsc: ENST00000595516.1:n.316+98C>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000470445
  ensembl transcript: ENST00000596049
  gene symbol: PIH1D1
  hgvsc: ENST00000596049.1:c.90+98C>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000473100
  ensembl transcript: ENST00000601053
  gene symbol: PIH1D1
  hgvsc: ENST00000601053.1:c.46+98C>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000262265
  ensembl transcript: ENST00000262265
  gene symbol: PIH1D1
  hgvsc: ENST00000262265.5:c.90+98C>A
  variant of: http://identifiers.org/hgnc/26075
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9263
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5650
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39865
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1774
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2279
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Thr13Asn
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

19-49954645-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49954645
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49954645
    reference: chr 19
allele count: 2
allele frequency: 1.968271464000315e-5
allele num: 101612
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595074
  gene symbol: PIH1D1
  hgvsc: ENST00000595074.1:n.307+97A>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000472571
  ensembl transcript: ENST00000595550
  gene symbol: PIH1D1
  hgvsc: ENST00000595550.1:c.37A>T
  hgvsp: ENSP00000472571.1:p.Thr13Ser
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469087
  ensembl transcript: ENST00000599366
  gene symbol: PIH1D1
  hgvsc: ENST00000599366.1:c.90+97A>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000470445
  ensembl transcript: ENST00000596049
  gene symbol: PIH1D1
  hgvsc: ENST00000596049.1:c.90+97A>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000471275
  ensembl transcript: ENST00000601825
  gene symbol: PIH1D1
  hgvsc: ENST00000601825.1:c.90+97A>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000473100
  ensembl transcript: ENST00000601053
  gene symbol: PIH1D1
  hgvsc: ENST00000601053.1:c.46+97A>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595516
  gene symbol: PIH1D1
  hgvsc: ENST00000595516.1:n.316+97A>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469793
  ensembl transcript: ENST00000597415
  gene symbol: PIH1D1
  hgvsc: ENST00000597415.1:c.37A>T
  hgvsp: ENSP00000469793.1:p.Thr13Ser
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469693
  ensembl transcript: ENST00000601807
  gene symbol: PIH1D1
  hgvsc: ENST00000601807.1:c.37A>T
  hgvsp: ENSP00000469693.1:p.Thr13Ser
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000262265
  ensembl transcript: ENST00000262265
  gene symbol: PIH1D1
  hgvsc: ENST00000262265.5:c.90+97A>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000599791
  gene symbol: PIH1D1
  hgvsc: ENST00000599791.1:n.264+97A>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000593900
  gene symbol: PIH1D1
  hgvsc: ENST00000593900.1:n.333+97A>T
  variant of: http://identifiers.org/hgnc/26075
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1753
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5744
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2322
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8949
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40145
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr13Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: Other
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

19-49954652-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49954652
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49954652
    reference: chr 19
allele count: 2
allele frequency: 1.858390633711206e-5
allele num: 107620
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000593900
  gene symbol: PIH1D1
  hgvsc: ENST00000593900.1:n.333+90G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000471275
  ensembl transcript: ENST00000601825
  gene symbol: PIH1D1
  hgvsc: ENST00000601825.1:c.90+90G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000599791
  gene symbol: PIH1D1
  hgvsc: ENST00000599791.1:n.264+90G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469793
  ensembl transcript: ENST00000597415
  gene symbol: PIH1D1
  hgvsc: ENST00000597415.1:c.30G>A
  hgvsp: ENST00000597415.1:c.30G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595074
  gene symbol: PIH1D1
  hgvsc: ENST00000595074.1:n.307+90G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000262265
  ensembl transcript: ENST00000262265
  gene symbol: PIH1D1
  hgvsc: ENST00000262265.5:c.90+90G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469693
  ensembl transcript: ENST00000601807
  gene symbol: PIH1D1
  hgvsc: ENST00000601807.1:c.30G>A
  hgvsp: ENST00000601807.1:c.30G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469087
  ensembl transcript: ENST00000599366
  gene symbol: PIH1D1
  hgvsc: ENST00000599366.1:c.90+90G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000472571
  ensembl transcript: ENST00000595550
  gene symbol: PIH1D1
  hgvsc: ENST00000595550.1:c.30G>A
  hgvsp: ENST00000595550.1:c.30G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000470445
  ensembl transcript: ENST00000596049
  gene symbol: PIH1D1
  hgvsc: ENST00000596049.1:c.90+90G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000473100
  ensembl transcript: ENST00000601053
  gene symbol: PIH1D1
  hgvsc: ENST00000601053.1:c.46+90G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595516
  gene symbol: PIH1D1
  hgvsc: ENST00000595516.1:n.316+90G>A
  variant of: http://identifiers.org/hgnc/26075
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6642
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2849
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6266
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42014
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1431
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys10Lys
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum

19-49954656-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49954656
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49954656
    reference: chr 19
allele count: 1
allele frequency: 9.123255177447314e-6
allele num: 109610
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000262265
  ensembl transcript: ENST00000262265
  gene symbol: PIH1D1
  hgvsc: ENST00000262265.5:c.90+86C>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595074
  gene symbol: PIH1D1
  hgvsc: ENST00000595074.1:n.307+86C>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000470445
  ensembl transcript: ENST00000596049
  gene symbol: PIH1D1
  hgvsc: ENST00000596049.1:c.90+86C>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000599791
  gene symbol: PIH1D1
  hgvsc: ENST00000599791.1:n.264+86C>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469793
  ensembl transcript: ENST00000597415
  gene symbol: PIH1D1
  hgvsc: ENST00000597415.1:c.26C>G
  hgvsp: ENSP00000469793.1:p.Thr9Ser
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000473100
  ensembl transcript: ENST00000601053
  gene symbol: PIH1D1
  hgvsc: ENST00000601053.1:c.46+86C>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469693
  ensembl transcript: ENST00000601807
  gene symbol: PIH1D1
  hgvsc: ENST00000601807.1:c.26C>G
  hgvsp: ENSP00000469693.1:p.Thr9Ser
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469087
  ensembl transcript: ENST00000599366
  gene symbol: PIH1D1
  hgvsc: ENST00000599366.1:c.90+86C>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000472571
  ensembl transcript: ENST00000595550
  gene symbol: PIH1D1
  hgvsc: ENST00000595550.1:c.26C>G
  hgvsp: ENSP00000472571.1:p.Thr9Ser
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000471275
  ensembl transcript: ENST00000601825
  gene symbol: PIH1D1
  hgvsc: ENST00000601825.1:c.90+86C>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000593900
  gene symbol: PIH1D1
  hgvsc: ENST00000593900.1:n.333+86C>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595516
  gene symbol: PIH1D1
  hgvsc: ENST00000595516.1:n.316+86C>G
  variant of: http://identifiers.org/hgnc/26075
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6903
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42805
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2991
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1270
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5380
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr9Ser
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum

19-49954657-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49954657
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49954657
    reference: chr 19
allele count: 1
allele frequency: 9.086448470750722e-6
allele num: 110054
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000470445
  ensembl transcript: ENST00000596049
  gene symbol: PIH1D1
  hgvsc: ENST00000596049.1:c.90+85A>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595074
  gene symbol: PIH1D1
  hgvsc: ENST00000595074.1:n.307+85A>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469087
  ensembl transcript: ENST00000599366
  gene symbol: PIH1D1
  hgvsc: ENST00000599366.1:c.90+85A>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595516
  gene symbol: PIH1D1
  hgvsc: ENST00000595516.1:n.316+85A>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000471275
  ensembl transcript: ENST00000601825
  gene symbol: PIH1D1
  hgvsc: ENST00000601825.1:c.90+85A>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000473100
  ensembl transcript: ENST00000601053
  gene symbol: PIH1D1
  hgvsc: ENST00000601053.1:c.46+85A>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469793
  ensembl transcript: ENST00000597415
  gene symbol: PIH1D1
  hgvsc: ENST00000597415.1:c.25A>G
  hgvsp: ENSP00000469793.1:p.Thr9Ala
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000599791
  gene symbol: PIH1D1
  hgvsc: ENST00000599791.1:n.264+85A>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469693
  ensembl transcript: ENST00000601807
  gene symbol: PIH1D1
  hgvsc: ENST00000601807.1:c.25A>G
  hgvsp: ENSP00000469693.1:p.Thr9Ala
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000262265
  ensembl transcript: ENST00000262265
  gene symbol: PIH1D1
  hgvsc: ENST00000262265.5:c.90+85A>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000472571
  ensembl transcript: ENST00000595550
  gene symbol: PIH1D1
  hgvsc: ENST00000595550.1:c.25A>G
  hgvsp: ENSP00000472571.1:p.Thr9Ala
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000593900
  gene symbol: PIH1D1
  hgvsc: ENST00000593900.1:n.333+85A>G
  variant of: http://identifiers.org/hgnc/26075
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42946
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6967
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3030
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5173
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr9Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/19-49954660-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49954660
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49954660
    reference: chr 19
allele count: 1
allele frequency: 8.963625607285635e-6
allele num: 111562
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000599791
  gene symbol: PIH1D1
  hgvsc: ENST00000599791.1:n.264+82T>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469793
  ensembl transcript: ENST00000597415
  gene symbol: PIH1D1
  hgvsc: ENST00000597415.1:c.22T>G
  hgvsp: ENSP00000469793.1:p.Cys8Gly
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000471275
  ensembl transcript: ENST00000601825
  gene symbol: PIH1D1
  hgvsc: ENST00000601825.1:c.90+82T>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595074
  gene symbol: PIH1D1
  hgvsc: ENST00000595074.1:n.307+82T>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469087
  ensembl transcript: ENST00000599366
  gene symbol: PIH1D1
  hgvsc: ENST00000599366.1:c.90+82T>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469693
  ensembl transcript: ENST00000601807
  gene symbol: PIH1D1
  hgvsc: ENST00000601807.1:c.22T>G
  hgvsp: ENSP00000469693.1:p.Cys8Gly
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000593900
  gene symbol: PIH1D1
  hgvsc: ENST00000593900.1:n.333+82T>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000473100
  ensembl transcript: ENST00000601053
  gene symbol: PIH1D1
  hgvsc: ENST00000601053.1:c.46+82T>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595516
  gene symbol: PIH1D1
  hgvsc: ENST00000595516.1:n.316+82T>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000470445
  ensembl transcript: ENST00000596049
  gene symbol: PIH1D1
  hgvsc: ENST00000596049.1:c.90+82T>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000262265
  ensembl transcript: ENST00000262265
  gene symbol: PIH1D1
  hgvsc: ENST00000262265.5:c.90+82T>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000472571
  ensembl transcript: ENST00000595550
  gene symbol: PIH1D1
  hgvsc: ENST00000595550.1:c.22T>G
  hgvsp: ENSP00000472571.1:p.Cys8Gly
  variant of: http://identifiers.org/hgnc/26075
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7198
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4504
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3162
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Cys8Gly
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP

19-49954660-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49954660
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49954660
    reference: chr 19
allele count: 1
allele frequency: 8.963625607285635e-6
allele num: 111562
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000473100
  ensembl transcript: ENST00000601053
  gene symbol: PIH1D1
  hgvsc: ENST00000601053.1:c.46+82T>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469693
  ensembl transcript: ENST00000601807
  gene symbol: PIH1D1
  hgvsc: ENST00000601807.1:c.22T>C
  hgvsp: ENSP00000469693.1:p.Cys8Arg
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000472571
  ensembl transcript: ENST00000595550
  gene symbol: PIH1D1
  hgvsc: ENST00000595550.1:c.22T>C
  hgvsp: ENSP00000472571.1:p.Cys8Arg
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469087
  ensembl transcript: ENST00000599366
  gene symbol: PIH1D1
  hgvsc: ENST00000599366.1:c.90+82T>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000593900
  gene symbol: PIH1D1
  hgvsc: ENST00000593900.1:n.333+82T>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595074
  gene symbol: PIH1D1
  hgvsc: ENST00000595074.1:n.307+82T>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000471275
  ensembl transcript: ENST00000601825
  gene symbol: PIH1D1
  hgvsc: ENST00000601825.1:c.90+82T>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469793
  ensembl transcript: ENST00000597415
  gene symbol: PIH1D1
  hgvsc: ENST00000597415.1:c.22T>C
  hgvsp: ENSP00000469793.1:p.Cys8Arg
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000599791
  gene symbol: PIH1D1
  hgvsc: ENST00000599791.1:n.264+82T>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000262265
  ensembl transcript: ENST00000262265
  gene symbol: PIH1D1
  hgvsc: ENST00000262265.5:c.90+82T>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595516
  gene symbol: PIH1D1
  hgvsc: ENST00000595516.1:n.316+82T>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000470445
  ensembl transcript: ENST00000596049
  gene symbol: PIH1D1
  hgvsc: ENST00000596049.1:c.90+82T>C
  variant of: http://identifiers.org/hgnc/26075
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3162
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4504
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43415
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Cys8Arg
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum

19-49954666-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49954666
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49954666
    reference: chr 19
allele count: 355
allele frequency: 3.133772355714059e-3
allele num: 113282
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595516
  gene symbol: PIH1D1
  hgvsc: ENST00000595516.1:n.316+76C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000471275
  ensembl transcript: ENST00000601825
  gene symbol: PIH1D1
  hgvsc: ENST00000601825.1:c.90+76C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000593900
  gene symbol: PIH1D1
  hgvsc: ENST00000593900.1:n.333+76C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000470445
  ensembl transcript: ENST00000596049
  gene symbol: PIH1D1
  hgvsc: ENST00000596049.1:c.90+76C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000472571
  ensembl transcript: ENST00000595550
  gene symbol: PIH1D1
  hgvsc: ENST00000595550.1:c.16C>T
  hgvsp: ENSP00000472571.1:p.Pro6Ser
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469793
  ensembl transcript: ENST00000597415
  gene symbol: PIH1D1
  hgvsc: ENST00000597415.1:c.16C>T
  hgvsp: ENSP00000469793.1:p.Pro6Ser
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000262265
  ensembl transcript: ENST00000262265
  gene symbol: PIH1D1
  hgvsc: ENST00000262265.5:c.90+76C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469693
  ensembl transcript: ENST00000601807
  gene symbol: PIH1D1
  hgvsc: ENST00000601807.1:c.16C>T
  hgvsp: ENSP00000469693.1:p.Pro6Ser
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595074
  gene symbol: PIH1D1
  hgvsc: ENST00000595074.1:n.307+76C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000473100
  ensembl transcript: ENST00000601053
  gene symbol: PIH1D1
  hgvsc: ENST00000601053.1:c.46+76C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000599791
  gene symbol: PIH1D1
  hgvsc: ENST00000599791.1:n.264+76C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469087
  ensembl transcript: ENST00000599366
  gene symbol: PIH1D1
  hgvsc: ENST00000599366.1:c.90+76C>T
  variant of: http://identifiers.org/hgnc/26075
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 4.25e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 3684
  bin: 7.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 4.75e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 3376
  bin: 3.25e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 43621
  bin: 2.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 1.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 7489
  bin: 2.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 1.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
hgvs: p.Pro6Ser
num of homozygotes: 8
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

19-49954670-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49954670
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49954670
    reference: chr 19
allele count: 2
allele frequency: 1.747030048916841e-5
allele num: 114480
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000593900
  gene symbol: PIH1D1
  hgvsc: ENST00000593900.1:n.333+72G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469693
  ensembl transcript: ENST00000601807
  gene symbol: PIH1D1
  hgvsc: ENST00000601807.1:c.12G>A
  hgvsp: ENST00000601807.1:c.12G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595516
  gene symbol: PIH1D1
  hgvsc: ENST00000595516.1:n.316+72G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000472571
  ensembl transcript: ENST00000595550
  gene symbol: PIH1D1
  hgvsc: ENST00000595550.1:c.12G>A
  hgvsp: ENST00000595550.1:c.12G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469793
  ensembl transcript: ENST00000597415
  gene symbol: PIH1D1
  hgvsc: ENST00000597415.1:c.12G>A
  hgvsp: ENST00000597415.1:c.12G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000599791
  gene symbol: PIH1D1
  hgvsc: ENST00000599791.1:n.264+72G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000473100
  ensembl transcript: ENST00000601053
  gene symbol: PIH1D1
  hgvsc: ENST00000601053.1:c.46+72G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595074
  gene symbol: PIH1D1
  hgvsc: ENST00000595074.1:n.307+72G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000470445
  ensembl transcript: ENST00000596049
  gene symbol: PIH1D1
  hgvsc: ENST00000596049.1:c.90+72G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000471275
  ensembl transcript: ENST00000601825
  gene symbol: PIH1D1
  hgvsc: ENST00000601825.1:c.90+72G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469087
  ensembl transcript: ENST00000599366
  gene symbol: PIH1D1
  hgvsc: ENST00000599366.1:c.90+72G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000262265
  ensembl transcript: ENST00000262265
  gene symbol: PIH1D1
  hgvsc: ENST00000262265.5:c.90+72G>A
  variant of: http://identifiers.org/hgnc/26075
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 44063
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7702
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3495
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3131
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln4Gln
num of homozygotes: 0
population: Latino
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum

19-49954672-GCAGTCCCATCTTTGAGCACCCCGC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49954672
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49954648
    reference: chr 19
allele count: 142
allele frequency: 1.233666944676119e-3
allele num: 115104
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000262265
  ensembl transcript: ENST00000262265
  gene symbol: PIH1D1
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: coding_sequence_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469693
  ensembl transcript: ENST00000601807
  gene symbol: PIH1D1
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: coding_sequence_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469793
  ensembl transcript: ENST00000597415
  gene symbol: PIH1D1
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: coding_sequence_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000472571
  ensembl transcript: ENST00000595550
  gene symbol: PIH1D1
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595074
  gene symbol: PIH1D1
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000473100
  ensembl transcript: ENST00000601053
  gene symbol: PIH1D1
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000470445
  ensembl transcript: ENST00000596049
  gene symbol: PIH1D1
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000593900
  gene symbol: PIH1D1
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000471275
  ensembl transcript: ENST00000601825
  gene symbol: PIH1D1
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595516
  gene symbol: PIH1D1
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000599791
  gene symbol: PIH1D1
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469087
  ensembl transcript: ENST00000599366
  gene symbol: PIH1D1
  variant of: http://identifiers.org/hgnc/26075
canonical: false
consequence: coding sequence
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 3532
  bin: 3.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 44183
  bin: 2.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 2875
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 3.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 7815
  bin: 2.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 4.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 2002
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: GCAGTCCCATCTTTGAGCACCCCGC
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: QD

19-49954675-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49954675
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49954675
    reference: chr 19
allele count: 1
allele frequency: 8.640652542079979e-6
allele num: 115732
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000472571
  ensembl transcript: ENST00000595550
  gene symbol: PIH1D1
  hgvsc: ENST00000595550.1:c.7C>G
  hgvsp: ENSP00000472571.1:p.Leu3Val
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000471275
  ensembl transcript: ENST00000601825
  gene symbol: PIH1D1
  hgvsc: ENST00000601825.1:c.90+67C>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000262265
  ensembl transcript: ENST00000262265
  gene symbol: PIH1D1
  hgvsc: ENST00000262265.5:c.90+67C>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469693
  ensembl transcript: ENST00000601807
  gene symbol: PIH1D1
  hgvsc: ENST00000601807.1:c.7C>G
  hgvsp: ENSP00000469693.1:p.Leu3Val
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000470445
  ensembl transcript: ENST00000596049
  gene symbol: PIH1D1
  hgvsc: ENST00000596049.1:c.90+67C>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595074
  gene symbol: PIH1D1
  hgvsc: ENST00000595074.1:n.307+67C>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000473100
  ensembl transcript: ENST00000601053
  gene symbol: PIH1D1
  hgvsc: ENST00000601053.1:c.46+67C>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469793
  ensembl transcript: ENST00000597415
  gene symbol: PIH1D1
  hgvsc: ENST00000597415.1:c.7C>G
  hgvsp: ENSP00000469793.1:p.Leu3Val
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000593900
  gene symbol: PIH1D1
  hgvsc: ENST00000593900.1:n.333+67C>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469087
  ensembl transcript: ENST00000599366
  gene symbol: PIH1D1
  hgvsc: ENST00000599366.1:c.90+67C>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000599791
  gene symbol: PIH1D1
  hgvsc: ENST00000599791.1:n.264+67C>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595516
  gene symbol: PIH1D1
  hgvsc: ENST00000595516.1:n.316+67C>G
  variant of: http://identifiers.org/hgnc/26075
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44490
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2465
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7956
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu3Val
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: South Asian
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP

http://identifiers.org/exac.variant/19-49954677-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49954677
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49954677
    reference: chr 19
allele count: 2
allele frequency: 1.723038751141513e-5
allele num: 116074
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000593900
  gene symbol: PIH1D1
  hgvsc: ENST00000593900.1:n.333+65G>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469693
  ensembl transcript: ENST00000601807
  gene symbol: PIH1D1
  hgvsc: ENST00000601807.1:c.5G>T
  hgvsp: ENSP00000469693.1:p.Gly2Val
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595516
  gene symbol: PIH1D1
  hgvsc: ENST00000595516.1:n.316+65G>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000473100
  ensembl transcript: ENST00000601053
  gene symbol: PIH1D1
  hgvsc: ENST00000601053.1:c.46+65G>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469793
  ensembl transcript: ENST00000597415
  gene symbol: PIH1D1
  hgvsc: ENST00000597415.1:c.5G>T
  hgvsp: ENSP00000469793.1:p.Gly2Val
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000471275
  ensembl transcript: ENST00000601825
  gene symbol: PIH1D1
  hgvsc: ENST00000601825.1:c.90+65G>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000262265
  ensembl transcript: ENST00000262265
  gene symbol: PIH1D1
  hgvsc: ENST00000262265.5:c.90+65G>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469087
  ensembl transcript: ENST00000599366
  gene symbol: PIH1D1
  hgvsc: ENST00000599366.1:c.90+65G>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595074
  gene symbol: PIH1D1
  hgvsc: ENST00000595074.1:n.307+65G>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000472571
  ensembl transcript: ENST00000595550
  gene symbol: PIH1D1
  hgvsc: ENST00000595550.1:c.5G>T
  hgvsp: ENSP00000472571.1:p.Gly2Val
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000599791
  gene symbol: PIH1D1
  hgvsc: ENST00000599791.1:n.264+65G>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000470445
  ensembl transcript: ENST00000596049
  gene symbol: PIH1D1
  hgvsc: ENST00000596049.1:c.90+65G>T
  variant of: http://identifiers.org/hgnc/26075
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3647
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44563
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2307
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Gly2Val
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD

19-49954678-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49954678
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49954678
    reference: chr 19
allele count: 4
allele frequency: 3.439735828288387e-5
allele num: 116288
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000470445
  ensembl transcript: ENST00000596049
  gene symbol: PIH1D1
  hgvsc: ENST00000596049.1:c.90+64G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469793
  ensembl transcript: ENST00000597415
  gene symbol: PIH1D1
  hgvsc: ENST00000597415.1:c.4G>A
  hgvsp: ENSP00000469793.1:p.Gly2Arg
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469693
  ensembl transcript: ENST00000601807
  gene symbol: PIH1D1
  hgvsc: ENST00000601807.1:c.4G>A
  hgvsp: ENSP00000469693.1:p.Gly2Arg
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595074
  gene symbol: PIH1D1
  hgvsc: ENST00000595074.1:n.307+64G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000262265
  ensembl transcript: ENST00000262265
  gene symbol: PIH1D1
  hgvsc: ENST00000262265.5:c.90+64G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000472571
  ensembl transcript: ENST00000595550
  gene symbol: PIH1D1
  hgvsc: ENST00000595550.1:c.4G>A
  hgvsp: ENSP00000472571.1:p.Gly2Arg
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000599791
  gene symbol: PIH1D1
  hgvsc: ENST00000599791.1:n.264+64G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000471275
  ensembl transcript: ENST00000601825
  gene symbol: PIH1D1
  hgvsc: ENST00000601825.1:c.90+64G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000593900
  gene symbol: PIH1D1
  hgvsc: ENST00000593900.1:n.333+64G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595516
  gene symbol: PIH1D1
  hgvsc: ENST00000595516.1:n.316+64G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000473100
  ensembl transcript: ENST00000601053
  gene symbol: PIH1D1
  hgvsc: ENST00000601053.1:c.46+64G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469087
  ensembl transcript: ENST00000599366
  gene symbol: PIH1D1
  hgvsc: ENST00000599366.1:c.90+64G>A
  variant of: http://identifiers.org/hgnc/26075
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8095
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2213
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3677
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44574
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Gly2Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: Other
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum

19-49954691-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49954691
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49954691
    reference: chr 19
allele count: 5
allele frequency: 4.235134677282737e-5
allele num: 118060
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000599791
  gene symbol: PIH1D1
  hgvsc: ENST00000599791.1:n.264+51G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469793
  ensembl transcript: ENST00000597415
  gene symbol: PIH1D1
  hgvsc: ENST00000597415.1:c.-10G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000593900
  gene symbol: PIH1D1
  hgvsc: ENST00000593900.1:n.333+51G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469087
  ensembl transcript: ENST00000599366
  gene symbol: PIH1D1
  hgvsc: ENST00000599366.1:c.90+51G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469693
  ensembl transcript: ENST00000601807
  gene symbol: PIH1D1
  hgvsc: ENST00000601807.1:c.-10G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000472571
  ensembl transcript: ENST00000595550
  gene symbol: PIH1D1
  hgvsc: ENST00000595550.1:c.-10G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595516
  gene symbol: PIH1D1
  hgvsc: ENST00000595516.1:n.316+51G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000473100
  ensembl transcript: ENST00000601053
  gene symbol: PIH1D1
  hgvsc: ENST00000601053.1:c.46+51G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000470445
  ensembl transcript: ENST00000596049
  gene symbol: PIH1D1
  hgvsc: ENST00000596049.1:c.90+51G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000262265
  ensembl transcript: ENST00000262265
  gene symbol: PIH1D1
  hgvsc: ENST00000262265.5:c.90+51G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000471275
  ensembl transcript: ENST00000601825
  gene symbol: PIH1D1
  hgvsc: ENST00000601825.1:c.90+51G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595074
  gene symbol: PIH1D1
  hgvsc: ENST00000595074.1:n.307+51G>A
  variant of: http://identifiers.org/hgnc/26075
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45013
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8514
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1419
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3924
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

19-49954695-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49954695
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49954695
    reference: chr 19
allele count: 5
allele frequency: 4.218056656937016e-5
allele num: 118538
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595516
  gene symbol: PIH1D1
  hgvsc: ENST00000595516.1:n.316+47C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000472571
  ensembl transcript: ENST00000595550
  gene symbol: PIH1D1
  hgvsc: ENST00000595550.1:c.-14C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000262265
  ensembl transcript: ENST00000262265
  gene symbol: PIH1D1
  hgvsc: ENST00000262265.5:c.90+47C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000470445
  ensembl transcript: ENST00000596049
  gene symbol: PIH1D1
  hgvsc: ENST00000596049.1:c.90+47C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595074
  gene symbol: PIH1D1
  hgvsc: ENST00000595074.1:n.307+47C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000593900
  gene symbol: PIH1D1
  hgvsc: ENST00000593900.1:n.333+47C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469793
  ensembl transcript: ENST00000597415
  gene symbol: PIH1D1
  hgvsc: ENST00000597415.1:c.-14C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469087
  ensembl transcript: ENST00000599366
  gene symbol: PIH1D1
  hgvsc: ENST00000599366.1:c.90+47C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000471275
  ensembl transcript: ENST00000601825
  gene symbol: PIH1D1
  hgvsc: ENST00000601825.1:c.90+47C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000599791
  gene symbol: PIH1D1
  hgvsc: ENST00000599791.1:n.264+47C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000473100
  ensembl transcript: ENST00000601053
  gene symbol: PIH1D1
  hgvsc: ENST00000601053.1:c.46+47C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469693
  ensembl transcript: ENST00000601807
  gene symbol: PIH1D1
  hgvsc: ENST00000601807.1:c.-14C>T
  variant of: http://identifiers.org/hgnc/26075
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4038
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8698
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45005
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: Other
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQ

19-49954702-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49954702
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49954702
    reference: chr 19
allele count: 2
allele frequency: 1.673584147810952e-5
allele num: 119504
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000473100
  ensembl transcript: ENST00000601053
  gene symbol: PIH1D1
  hgvsc: ENST00000601053.1:c.46+40A>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595516
  gene symbol: PIH1D1
  hgvsc: ENST00000595516.1:n.316+40A>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000470445
  ensembl transcript: ENST00000596049
  gene symbol: PIH1D1
  hgvsc: ENST00000596049.1:c.90+40A>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000262265
  ensembl transcript: ENST00000262265
  gene symbol: PIH1D1
  hgvsc: ENST00000262265.5:c.90+40A>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000472571
  ensembl transcript: ENST00000595550
  gene symbol: PIH1D1
  hgvsc: ENST00000595550.1:c.-21A>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469793
  ensembl transcript: ENST00000597415
  gene symbol: PIH1D1
  hgvsc: ENST00000597415.1:c.-21A>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469087
  ensembl transcript: ENST00000599366
  gene symbol: PIH1D1
  hgvsc: ENST00000599366.1:c.90+40A>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469693
  ensembl transcript: ENST00000601807
  gene symbol: PIH1D1
  hgvsc: ENST00000601807.1:c.-21A>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000471275
  ensembl transcript: ENST00000601825
  gene symbol: PIH1D1
  hgvsc: ENST00000601825.1:c.90+40A>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595074
  gene symbol: PIH1D1
  hgvsc: ENST00000595074.1:n.307+40A>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000593900
  gene symbol: PIH1D1
  hgvsc: ENST00000593900.1:n.333+40A>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000599791
  gene symbol: PIH1D1
  hgvsc: ENST00000599791.1:n.264+40A>C
  variant of: http://identifiers.org/hgnc/26075
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45180
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8886
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4152
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

19-49954707-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49954707
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49954707
    reference: chr 19
allele count: 1
allele frequency: 8.34599142032082e-6
allele num: 119818
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469693
  ensembl transcript: ENST00000601807
  gene symbol: PIH1D1
  hgvsc: ENST00000601807.1:c.-26C>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000471275
  ensembl transcript: ENST00000601825
  gene symbol: PIH1D1
  hgvsc: ENST00000601825.1:c.90+35C>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000472571
  ensembl transcript: ENST00000595550
  gene symbol: PIH1D1
  hgvsc: ENST00000595550.1:c.-26C>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000470445
  ensembl transcript: ENST00000596049
  gene symbol: PIH1D1
  hgvsc: ENST00000596049.1:c.90+35C>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000593900
  gene symbol: PIH1D1
  hgvsc: ENST00000593900.1:n.333+35C>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000599791
  gene symbol: PIH1D1
  hgvsc: ENST00000599791.1:n.264+35C>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000473100
  ensembl transcript: ENST00000601053
  gene symbol: PIH1D1
  hgvsc: ENST00000601053.1:c.46+35C>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469087
  ensembl transcript: ENST00000599366
  gene symbol: PIH1D1
  hgvsc: ENST00000599366.1:c.90+35C>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469793
  ensembl transcript: ENST00000597415
  gene symbol: PIH1D1
  hgvsc: ENST00000597415.1:c.-26C>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000262265
  ensembl transcript: ENST00000262265
  gene symbol: PIH1D1
  hgvsc: ENST00000262265.5:c.90+35C>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595516
  gene symbol: PIH1D1
  hgvsc: ENST00000595516.1:n.316+35C>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595074
  gene symbol: PIH1D1
  hgvsc: ENST00000595074.1:n.307+35C>G
  variant of: http://identifiers.org/hgnc/26075
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4237
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45163
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9001
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
reference allele: G
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: VQSLOD

19-49954718-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49954718
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49954718
    reference: chr 19
allele count: 1
allele frequency: 8.311999202048076e-6
allele num: 120308
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000593900
  gene symbol: PIH1D1
  hgvsc: ENST00000593900.1:n.333+24C>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469087
  ensembl transcript: ENST00000599366
  gene symbol: PIH1D1
  hgvsc: ENST00000599366.1:c.90+24C>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000473100
  ensembl transcript: ENST00000601053
  gene symbol: PIH1D1
  hgvsc: ENST00000601053.1:c.46+24C>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000472571
  ensembl transcript: ENST00000595550
  gene symbol: PIH1D1
  hgvsc: ENST00000595550.1:c.-37C>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469793
  ensembl transcript: ENST00000597415
  gene symbol: PIH1D1
  hgvsc: ENST00000597415.1:c.-37C>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595074
  gene symbol: PIH1D1
  hgvsc: ENST00000595074.1:n.307+24C>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595516
  gene symbol: PIH1D1
  hgvsc: ENST00000595516.1:n.316+24C>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000599791
  gene symbol: PIH1D1
  hgvsc: ENST00000599791.1:n.264+24C>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469693
  ensembl transcript: ENST00000601807
  gene symbol: PIH1D1
  hgvsc: ENST00000601807.1:c.-37C>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000262265
  ensembl transcript: ENST00000262265
  gene symbol: PIH1D1
  hgvsc: ENST00000262265.5:c.90+24C>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000471275
  ensembl transcript: ENST00000601825
  gene symbol: PIH1D1
  hgvsc: ENST00000601825.1:c.90+24C>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000470445
  ensembl transcript: ENST00000596049
  gene symbol: PIH1D1
  hgvsc: ENST00000596049.1:c.90+24C>A
  variant of: http://identifiers.org/hgnc/26075
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45314
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9127
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4283
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ

19-49954725-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49954725
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49954725
    reference: chr 19
allele count: 1
allele frequency: 8.29737802854298e-6
allele num: 120520
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000472571
  ensembl transcript: ENST00000595550
  gene symbol: PIH1D1
  hgvsc: ENST00000595550.1:c.-44C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595074
  gene symbol: PIH1D1
  hgvsc: ENST00000595074.1:n.307+17C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000473100
  ensembl transcript: ENST00000601053
  gene symbol: PIH1D1
  hgvsc: ENST00000601053.1:c.46+17C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000593900
  gene symbol: PIH1D1
  hgvsc: ENST00000593900.1:n.333+17C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595516
  gene symbol: PIH1D1
  hgvsc: ENST00000595516.1:n.316+17C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000471275
  ensembl transcript: ENST00000601825
  gene symbol: PIH1D1
  hgvsc: ENST00000601825.1:c.90+17C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000262265
  ensembl transcript: ENST00000262265
  gene symbol: PIH1D1
  hgvsc: ENST00000262265.5:c.90+17C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469793
  ensembl transcript: ENST00000597415
  gene symbol: PIH1D1
  hgvsc: ENST00000597415.1:c.-44C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469693
  ensembl transcript: ENST00000601807
  gene symbol: PIH1D1
  hgvsc: ENST00000601807.1:c.-44C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000470445
  ensembl transcript: ENST00000596049
  gene symbol: PIH1D1
  hgvsc: ENST00000596049.1:c.90+17C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000599791
  gene symbol: PIH1D1
  hgvsc: ENST00000599791.1:n.264+17C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469087
  ensembl transcript: ENST00000599366
  gene symbol: PIH1D1
  hgvsc: ENST00000599366.1:c.90+17C>T
  variant of: http://identifiers.org/hgnc/26075
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 45398
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9154
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4311
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: FS

19-49954727-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49954727
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49954727
    reference: chr 19
allele count: 4
allele frequency: 3.31796011811938e-5
allele num: 120556
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469793
  ensembl transcript: ENST00000597415
  gene symbol: PIH1D1
  hgvsc: ENST00000597415.1:c.-46C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000262265
  ensembl transcript: ENST00000262265
  gene symbol: PIH1D1
  hgvsc: ENST00000262265.5:c.90+15C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595516
  gene symbol: PIH1D1
  hgvsc: ENST00000595516.1:n.316+15C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000473100
  ensembl transcript: ENST00000601053
  gene symbol: PIH1D1
  hgvsc: ENST00000601053.1:c.46+15C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595074
  gene symbol: PIH1D1
  hgvsc: ENST00000595074.1:n.307+15C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469693
  ensembl transcript: ENST00000601807
  gene symbol: PIH1D1
  hgvsc: ENST00000601807.1:c.-46C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000471275
  ensembl transcript: ENST00000601825
  gene symbol: PIH1D1
  hgvsc: ENST00000601825.1:c.90+15C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000470445
  ensembl transcript: ENST00000596049
  gene symbol: PIH1D1
  hgvsc: ENST00000596049.1:c.90+15C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000472571
  ensembl transcript: ENST00000595550
  gene symbol: PIH1D1
  hgvsc: ENST00000595550.1:c.-46C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000593900
  gene symbol: PIH1D1
  hgvsc: ENST00000593900.1:n.333+15C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469087
  ensembl transcript: ENST00000599366
  gene symbol: PIH1D1
  hgvsc: ENST00000599366.1:c.90+15C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000599791
  gene symbol: PIH1D1
  hgvsc: ENST00000599791.1:n.264+15C>T
  variant of: http://identifiers.org/hgnc/26075
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45386
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9170
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4317
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

19-49954730-CG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49954730
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49954729
    reference: chr 19
allele count: 1
allele frequency: 8.291186468783682e-6
allele num: 120610
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595074
  gene symbol: PIH1D1
  hgvsc: ENST00000595074.1:n.307+11delC
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469087
  ensembl transcript: ENST00000599366
  gene symbol: PIH1D1
  hgvsc: ENST00000599366.1:c.90+11delC
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000473100
  ensembl transcript: ENST00000601053
  gene symbol: PIH1D1
  hgvsc: ENST00000601053.1:c.46+11delC
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000593900
  gene symbol: PIH1D1
  hgvsc: ENST00000593900.1:n.333+11delC
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000262265
  ensembl transcript: ENST00000262265
  gene symbol: PIH1D1
  hgvsc: ENST00000262265.5:c.90+11delC
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000470445
  ensembl transcript: ENST00000596049
  gene symbol: PIH1D1
  hgvsc: ENST00000596049.1:c.90+11delC
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000472571
  ensembl transcript: ENST00000595550
  gene symbol: PIH1D1
  hgvsc: ENST00000595550.1:c.-50delC
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469793
  ensembl transcript: ENST00000597415
  gene symbol: PIH1D1
  hgvsc: ENST00000597415.1:c.-50delC
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595516
  gene symbol: PIH1D1
  hgvsc: ENST00000595516.1:n.316+11delC
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000471275
  ensembl transcript: ENST00000601825
  gene symbol: PIH1D1
  hgvsc: ENST00000601825.1:c.90+11delC
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469693
  ensembl transcript: ENST00000601807
  gene symbol: PIH1D1
  hgvsc: ENST00000601807.1:c.-50delC
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000599791
  gene symbol: PIH1D1
  hgvsc: ENST00000599791.1:n.264+11delC
  variant of: http://identifiers.org/hgnc/26075
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4333
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9187
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
reference allele: CG
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

19-49954732-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49954732
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49954732
    reference: chr 19
allele count: 1
allele frequency: 8.287475966319697e-6
allele num: 120664
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595074
  gene symbol: PIH1D1
  hgvsc: ENST00000595074.1:n.307+10C>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000472571
  ensembl transcript: ENST00000595550
  gene symbol: PIH1D1
  hgvsc: ENST00000595550.1:c.-51C>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000593900
  gene symbol: PIH1D1
  hgvsc: ENST00000593900.1:n.333+10C>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000471275
  ensembl transcript: ENST00000601825
  gene symbol: PIH1D1
  hgvsc: ENST00000601825.1:c.90+10C>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595516
  gene symbol: PIH1D1
  hgvsc: ENST00000595516.1:n.316+10C>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469693
  ensembl transcript: ENST00000601807
  gene symbol: PIH1D1
  hgvsc: ENST00000601807.1:c.-51C>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469793
  ensembl transcript: ENST00000597415
  gene symbol: PIH1D1
  hgvsc: ENST00000597415.1:c.-51C>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000470445
  ensembl transcript: ENST00000596049
  gene symbol: PIH1D1
  hgvsc: ENST00000596049.1:c.90+10C>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000473100
  ensembl transcript: ENST00000601053
  gene symbol: PIH1D1
  hgvsc: ENST00000601053.1:c.46+10C>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000262265
  ensembl transcript: ENST00000262265
  gene symbol: PIH1D1
  hgvsc: ENST00000262265.5:c.90+10C>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000599791
  gene symbol: PIH1D1
  hgvsc: ENST00000599791.1:n.264+10C>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469087
  ensembl transcript: ENST00000599366
  gene symbol: PIH1D1
  hgvsc: ENST00000599366.1:c.90+10C>A
  variant of: http://identifiers.org/hgnc/26075
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45394
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4350
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9190
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: QD

19-49954734-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49954734
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49954734
    reference: chr 19
allele count: 1
allele frequency: 8.284043275842073e-6
allele num: 120714
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469087
  ensembl transcript: ENST00000599366
  gene symbol: PIH1D1
  hgvsc: ENST00000599366.1:c.90+8G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000470445
  ensembl transcript: ENST00000596049
  gene symbol: PIH1D1
  hgvsc: ENST00000596049.1:c.90+8G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595074
  gene symbol: PIH1D1
  hgvsc: ENST00000595074.1:n.307+8G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469793
  ensembl transcript: ENST00000597415
  gene symbol: PIH1D1
  hgvsc: ENST00000597415.1:c.-53G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000599791
  gene symbol: PIH1D1
  hgvsc: ENST00000599791.1:n.264+8G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000473100
  ensembl transcript: ENST00000601053
  gene symbol: PIH1D1
  hgvsc: ENST00000601053.1:c.46+8G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595516
  gene symbol: PIH1D1
  hgvsc: ENST00000595516.1:n.316+8G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469693
  ensembl transcript: ENST00000601807
  gene symbol: PIH1D1
  hgvsc: ENST00000601807.1:c.-53G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000471275
  ensembl transcript: ENST00000601825
  gene symbol: PIH1D1
  hgvsc: ENST00000601825.1:c.90+8G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000262265
  ensembl transcript: ENST00000262265
  gene symbol: PIH1D1
  hgvsc: ENST00000262265.5:c.90+8G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000593900
  gene symbol: PIH1D1
  hgvsc: ENST00000593900.1:n.333+8G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000472571
  ensembl transcript: ENST00000595550
  gene symbol: PIH1D1
  hgvsc: ENST00000595550.1:c.-53G>A
  variant of: http://identifiers.org/hgnc/26075
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45401
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4354
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9202
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.90+8G>A
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum

19-49954743-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49954743
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49954743
    reference: chr 19
allele count: 1
allele frequency: 8.272119647938589e-6
allele num: 120888
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000473100
  ensembl transcript: ENST00000601053
  gene symbol: PIH1D1
  hgvsc: ENST00000601053.1:c.45A>G
  hgvsp: ENSP00000473100.1:p.Gln16Arg
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000593900
  gene symbol: PIH1D1
  hgvsc: ENST00000593900.1:n.332A>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469087
  ensembl transcript: ENST00000599366
  gene symbol: PIH1D1
  hgvsc: ENST00000599366.1:c.89A>G
  hgvsp: ENSP00000469087.1:p.Gln30Arg
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469793
  ensembl transcript: ENST00000597415
  gene symbol: PIH1D1
  hgvsc: ENST00000597415.1:c.-62A>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595074
  gene symbol: PIH1D1
  hgvsc: ENST00000595074.1:n.306A>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000262265
  ensembl transcript: ENST00000262265
  gene symbol: PIH1D1
  hgvsc: ENST00000262265.5:c.89A>G
  hgvsp: ENSP00000262265.4:p.Gln30Arg
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595516
  gene symbol: PIH1D1
  hgvsc: ENST00000595516.1:n.315A>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000599791
  gene symbol: PIH1D1
  hgvsc: ENST00000599791.1:n.263A>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000471275
  ensembl transcript: ENST00000601825
  gene symbol: PIH1D1
  hgvsc: ENST00000601825.1:c.89A>G
  hgvsp: ENSP00000471275.1:p.Gln30Arg
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000470445
  ensembl transcript: ENST00000596049
  gene symbol: PIH1D1
  hgvsc: ENST00000596049.1:c.89A>G
  hgvsp: ENSP00000470445.1:p.Gln30Arg
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000472571
  ensembl transcript: ENST00000595550
  gene symbol: PIH1D1
  hgvsc: ENST00000595550.1:c.-62A>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469693
  ensembl transcript: ENST00000601807
  gene symbol: PIH1D1
  hgvsc: ENST00000601807.1:c.-62A>G
  variant of: http://identifiers.org/hgnc/26075
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9234
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45447
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4372
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln30Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD

19-49954761-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49954761
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49954761
    reference: chr 19
allele count: 1
allele frequency: 8.258593066085262e-6
allele num: 121086
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000262265
  ensembl transcript: ENST00000262265
  gene symbol: PIH1D1
  hgvsc: ENST00000262265.5:c.71T>A
  hgvsp: ENSP00000262265.4:p.Phe24Tyr
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469693
  ensembl transcript: ENST00000601807
  gene symbol: PIH1D1
  hgvsc: ENST00000601807.1:c.-80T>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000473100
  ensembl transcript: ENST00000601053
  gene symbol: PIH1D1
  hgvsc: ENST00000601053.1:c.27T>A
  hgvsp: ENSP00000473100.1:p.Phe10Tyr
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000472571
  ensembl transcript: ENST00000595550
  gene symbol: PIH1D1
  hgvsc: ENST00000595550.1:c.-80T>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469793
  ensembl transcript: ENST00000597415
  gene symbol: PIH1D1
  hgvsc: ENST00000597415.1:c.-80T>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000470445
  ensembl transcript: ENST00000596049
  gene symbol: PIH1D1
  hgvsc: ENST00000596049.1:c.71T>A
  hgvsp: ENSP00000470445.1:p.Phe24Tyr
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595074
  gene symbol: PIH1D1
  hgvsc: ENST00000595074.1:n.288T>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000593900
  gene symbol: PIH1D1
  hgvsc: ENST00000593900.1:n.314T>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595516
  gene symbol: PIH1D1
  hgvsc: ENST00000595516.1:n.297T>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000599791
  gene symbol: PIH1D1
  hgvsc: ENST00000599791.1:n.245T>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469087
  ensembl transcript: ENST00000599366
  gene symbol: PIH1D1
  hgvsc: ENST00000599366.1:c.71T>A
  hgvsp: ENSP00000469087.1:p.Phe24Tyr
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000471275
  ensembl transcript: ENST00000601825
  gene symbol: PIH1D1
  hgvsc: ENST00000601825.1:c.71T>A
  hgvsp: ENSP00000471275.1:p.Phe24Tyr
  variant of: http://identifiers.org/hgnc/26075
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45459
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4390
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9297
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Phe24Tyr
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

http://identifiers.org/exac.variant/19-49954764-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49954764
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49954764
    reference: chr 19
allele count: 2
allele frequency: 1.651500388102591e-5
allele num: 121102
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000471275
  ensembl transcript: ENST00000601825
  gene symbol: PIH1D1
  hgvsc: ENST00000601825.1:c.68G>T
  hgvsp: ENSP00000471275.1:p.Arg23Leu
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595516
  gene symbol: PIH1D1
  hgvsc: ENST00000595516.1:n.294G>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469693
  ensembl transcript: ENST00000601807
  gene symbol: PIH1D1
  hgvsc: ENST00000601807.1:c.-83G>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469087
  ensembl transcript: ENST00000599366
  gene symbol: PIH1D1
  hgvsc: ENST00000599366.1:c.68G>T
  hgvsp: ENSP00000469087.1:p.Arg23Leu
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000470445
  ensembl transcript: ENST00000596049
  gene symbol: PIH1D1
  hgvsc: ENST00000596049.1:c.68G>T
  hgvsp: ENSP00000470445.1:p.Arg23Leu
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000472571
  ensembl transcript: ENST00000595550
  gene symbol: PIH1D1
  hgvsc: ENST00000595550.1:c.-83G>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469793
  ensembl transcript: ENST00000597415
  gene symbol: PIH1D1
  hgvsc: ENST00000597415.1:c.-83G>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595074
  gene symbol: PIH1D1
  hgvsc: ENST00000595074.1:n.285G>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000593900
  gene symbol: PIH1D1
  hgvsc: ENST00000593900.1:n.311G>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000473100
  ensembl transcript: ENST00000601053
  gene symbol: PIH1D1
  hgvsc: ENST00000601053.1:c.24G>T
  hgvsp: ENSP00000473100.1:p.Arg9Leu
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000599791
  gene symbol: PIH1D1
  hgvsc: ENST00000599791.1:n.242G>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000262265
  ensembl transcript: ENST00000262265
  gene symbol: PIH1D1
  hgvsc: ENST00000262265.5:c.68G>T
  hgvsp: ENSP00000262265.4:p.Arg23Leu
  variant of: http://identifiers.org/hgnc/26075
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45472
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4389
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9299
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg23Leu
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum

19-49954766-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49954766
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49954766
    reference: chr 19
allele count: 13
allele frequency: 1.07342206955775e-4
allele num: 121108
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469087
  ensembl transcript: ENST00000599366
  gene symbol: PIH1D1
  hgvsc: ENST00000599366.1:c.66G>A
  hgvsp: ENST00000599366.1:c.66G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000262265
  ensembl transcript: ENST00000262265
  gene symbol: PIH1D1
  hgvsc: ENST00000262265.5:c.66G>A
  hgvsp: ENST00000262265.5:c.66G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469793
  ensembl transcript: ENST00000597415
  gene symbol: PIH1D1
  hgvsc: ENST00000597415.1:c.-85G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000593900
  gene symbol: PIH1D1
  hgvsc: ENST00000593900.1:n.309G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595516
  gene symbol: PIH1D1
  hgvsc: ENST00000595516.1:n.292G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000472571
  ensembl transcript: ENST00000595550
  gene symbol: PIH1D1
  hgvsc: ENST00000595550.1:c.-85G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000473100
  ensembl transcript: ENST00000601053
  gene symbol: PIH1D1
  hgvsc: ENST00000601053.1:c.22G>A
  hgvsp: ENST00000601053.1:c.22G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469693
  ensembl transcript: ENST00000601807
  gene symbol: PIH1D1
  hgvsc: ENST00000601807.1:c.-85G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000471275
  ensembl transcript: ENST00000601825
  gene symbol: PIH1D1
  hgvsc: ENST00000601825.1:c.66G>A
  hgvsp: ENST00000601825.1:c.66G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000470445
  ensembl transcript: ENST00000596049
  gene symbol: PIH1D1
  hgvsc: ENST00000596049.1:c.66G>A
  hgvsp: ENST00000596049.1:c.66G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595074
  gene symbol: PIH1D1
  hgvsc: ENST00000595074.1:n.283G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000599791
  gene symbol: PIH1D1
  hgvsc: ENST00000599791.1:n.240G>A
  variant of: http://identifiers.org/hgnc/26075
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4389
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45451
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9303
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala22Ala
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

19-49954769-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49954769
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49954769
    reference: chr 19
allele count: 1
allele frequency: 8.256274768824306e-6
allele num: 121120
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595516
  gene symbol: PIH1D1
  hgvsc: ENST00000595516.1:n.289G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000471275
  ensembl transcript: ENST00000601825
  gene symbol: PIH1D1
  hgvsc: ENST00000601825.1:c.63G>A
  hgvsp: ENST00000601825.1:c.63G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469793
  ensembl transcript: ENST00000597415
  gene symbol: PIH1D1
  hgvsc: ENST00000597415.1:c.-88G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000473100
  ensembl transcript: ENST00000601053
  gene symbol: PIH1D1
  hgvsc: ENST00000601053.1:c.19G>A
  hgvsp: ENST00000601053.1:c.19G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000262265
  ensembl transcript: ENST00000262265
  gene symbol: PIH1D1
  hgvsc: ENST00000262265.5:c.63G>A
  hgvsp: ENST00000262265.5:c.63G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469693
  ensembl transcript: ENST00000601807
  gene symbol: PIH1D1
  hgvsc: ENST00000601807.1:c.-88G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000470445
  ensembl transcript: ENST00000596049
  gene symbol: PIH1D1
  hgvsc: ENST00000596049.1:c.63G>A
  hgvsp: ENST00000596049.1:c.63G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000593900
  gene symbol: PIH1D1
  hgvsc: ENST00000593900.1:n.306G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000599791
  gene symbol: PIH1D1
  hgvsc: ENST00000599791.1:n.237G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469087
  ensembl transcript: ENST00000599366
  gene symbol: PIH1D1
  hgvsc: ENST00000599366.1:c.63G>A
  hgvsp: ENST00000599366.1:c.63G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000472571
  ensembl transcript: ENST00000595550
  gene symbol: PIH1D1
  hgvsc: ENST00000595550.1:c.-88G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595074
  gene symbol: PIH1D1
  hgvsc: ENST00000595074.1:n.280G>A
  variant of: http://identifiers.org/hgnc/26075
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4397
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45434
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9303
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ser21Ser
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: FS

19-49954770-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49954770
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49954770
    reference: chr 19
allele count: 2
allele frequency: 1.65128222064433e-5
allele num: 121118
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000473100
  ensembl transcript: ENST00000601053
  gene symbol: PIH1D1
  hgvsc: ENST00000601053.1:c.18C>T
  hgvsp: ENSP00000473100.1:p.Ser7Leu
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469693
  ensembl transcript: ENST00000601807
  gene symbol: PIH1D1
  hgvsc: ENST00000601807.1:c.-89C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000599791
  gene symbol: PIH1D1
  hgvsc: ENST00000599791.1:n.236C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469087
  ensembl transcript: ENST00000599366
  gene symbol: PIH1D1
  hgvsc: ENST00000599366.1:c.62C>T
  hgvsp: ENSP00000469087.1:p.Ser21Leu
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000470445
  ensembl transcript: ENST00000596049
  gene symbol: PIH1D1
  hgvsc: ENST00000596049.1:c.62C>T
  hgvsp: ENSP00000470445.1:p.Ser21Leu
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000471275
  ensembl transcript: ENST00000601825
  gene symbol: PIH1D1
  hgvsc: ENST00000601825.1:c.62C>T
  hgvsp: ENSP00000471275.1:p.Ser21Leu
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469793
  ensembl transcript: ENST00000597415
  gene symbol: PIH1D1
  hgvsc: ENST00000597415.1:c.-89C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595516
  gene symbol: PIH1D1
  hgvsc: ENST00000595516.1:n.288C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000472571
  ensembl transcript: ENST00000595550
  gene symbol: PIH1D1
  hgvsc: ENST00000595550.1:c.-89C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000593900
  gene symbol: PIH1D1
  hgvsc: ENST00000593900.1:n.305C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000262265
  ensembl transcript: ENST00000262265
  gene symbol: PIH1D1
  hgvsc: ENST00000262265.5:c.62C>T
  hgvsp: ENSP00000262265.4:p.Ser21Leu
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595074
  gene symbol: PIH1D1
  hgvsc: ENST00000595074.1:n.279C>T
  variant of: http://identifiers.org/hgnc/26075
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9307
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45427
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4401
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser21Leu
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: QD

19-49954774-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49954774
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49954774
    reference: chr 19
allele count: 1
allele frequency: 8.25559316436886e-6
allele num: 121130
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469693
  ensembl transcript: ENST00000601807
  gene symbol: PIH1D1
  hgvsc: ENST00000601807.1:c.-93G>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000470445
  ensembl transcript: ENST00000596049
  gene symbol: PIH1D1
  hgvsc: ENST00000596049.1:c.58G>C
  hgvsp: ENSP00000470445.1:p.Asp20His
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469087
  ensembl transcript: ENST00000599366
  gene symbol: PIH1D1
  hgvsc: ENST00000599366.1:c.58G>C
  hgvsp: ENSP00000469087.1:p.Asp20His
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000471275
  ensembl transcript: ENST00000601825
  gene symbol: PIH1D1
  hgvsc: ENST00000601825.1:c.58G>C
  hgvsp: ENSP00000471275.1:p.Asp20His
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000473100
  ensembl transcript: ENST00000601053
  gene symbol: PIH1D1
  hgvsc: ENST00000601053.1:c.14G>C
  hgvsp: ENSP00000473100.1:p.Asp6His
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000472571
  ensembl transcript: ENST00000595550
  gene symbol: PIH1D1
  hgvsc: ENST00000595550.1:c.-93G>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469793
  ensembl transcript: ENST00000597415
  gene symbol: PIH1D1
  hgvsc: ENST00000597415.1:c.-93G>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595074
  gene symbol: PIH1D1
  hgvsc: ENST00000595074.1:n.275G>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000262265
  ensembl transcript: ENST00000262265
  gene symbol: PIH1D1
  hgvsc: ENST00000262265.5:c.58G>C
  hgvsp: ENSP00000262265.4:p.Asp20His
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000593900
  gene symbol: PIH1D1
  hgvsc: ENST00000593900.1:n.301G>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595516
  gene symbol: PIH1D1
  hgvsc: ENST00000595516.1:n.284G>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000599791
  gene symbol: PIH1D1
  hgvsc: ENST00000599791.1:n.232G>C
  variant of: http://identifiers.org/hgnc/26075
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45378
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4407
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9306
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp20His
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: QD

19-49954796-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49954796
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49954796
    reference: chr 19
allele count: 1
allele frequency: 8.254502831294471e-6
allele num: 121146
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000593900
  gene symbol: PIH1D1
  hgvsc: ENST00000593900.1:n.279C>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469087
  ensembl transcript: ENST00000599366
  gene symbol: PIH1D1
  hgvsc: ENST00000599366.1:c.36C>G
  hgvsp: ENSP00000469087.1:p.Ser12Arg
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000471275
  ensembl transcript: ENST00000601825
  gene symbol: PIH1D1
  hgvsc: ENST00000601825.1:c.36C>G
  hgvsp: ENSP00000471275.1:p.Ser12Arg
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000470445
  ensembl transcript: ENST00000596049
  gene symbol: PIH1D1
  hgvsc: ENST00000596049.1:c.36C>G
  hgvsp: ENSP00000470445.1:p.Ser12Arg
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000262265
  ensembl transcript: ENST00000262265
  gene symbol: PIH1D1
  hgvsc: ENST00000262265.5:c.36C>G
  hgvsp: ENSP00000262265.4:p.Ser12Arg
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595074
  gene symbol: PIH1D1
  hgvsc: ENST00000595074.1:n.253C>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595516
  gene symbol: PIH1D1
  hgvsc: ENST00000595516.1:n.262C>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469793
  ensembl transcript: ENST00000597415
  gene symbol: PIH1D1
  hgvsc: ENST00000597415.1:c.-115C>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469693
  ensembl transcript: ENST00000601807
  gene symbol: PIH1D1
  hgvsc: ENST00000601807.1:c.-115C>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000599791
  gene symbol: PIH1D1
  hgvsc: ENST00000599791.1:n.210C>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000472571
  ensembl transcript: ENST00000595550
  gene symbol: PIH1D1
  hgvsc: ENST00000595550.1:c.-115C>G
  variant of: http://identifiers.org/hgnc/26075
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9322
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4450
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45223
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser12Arg
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff

19-49954803-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49954803
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49954803
    reference: chr 19
allele count: 83073
allele frequency: 6.862134478770857e-1
allele num: 121060
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000262265
  ensembl transcript: ENST00000262265
  gene symbol: PIH1D1
  hgvsc: ENST00000262265.5:c.29G>A
  hgvsp: ENSP00000262265.4:p.Gly10Glu
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000470445
  ensembl transcript: ENST00000596049
  gene symbol: PIH1D1
  hgvsc: ENST00000596049.1:c.29G>A
  hgvsp: ENSP00000470445.1:p.Gly10Glu
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595074
  gene symbol: PIH1D1
  hgvsc: ENST00000595074.1:n.246G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469087
  ensembl transcript: ENST00000599366
  gene symbol: PIH1D1
  hgvsc: ENST00000599366.1:c.29G>A
  hgvsp: ENSP00000469087.1:p.Gly10Glu
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000472571
  ensembl transcript: ENST00000595550
  gene symbol: PIH1D1
  hgvsc: ENST00000595550.1:c.-122G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000593900
  gene symbol: PIH1D1
  hgvsc: ENST00000593900.1:n.272G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000471275
  ensembl transcript: ENST00000601825
  gene symbol: PIH1D1
  hgvsc: ENST00000601825.1:c.29G>A
  hgvsp: ENSP00000471275.1:p.Gly10Glu
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469793
  ensembl transcript: ENST00000597415
  gene symbol: PIH1D1
  hgvsc: ENST00000597415.1:c.-122G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000599791
  gene symbol: PIH1D1
  hgvsc: ENST00000599791.1:n.203G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469693
  ensembl transcript: ENST00000601807
  gene symbol: PIH1D1
  hgvsc: ENST00000601807.1:c.-122G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595516
  gene symbol: PIH1D1
  hgvsc: ENST00000595516.1:n.255G>A
  variant of: http://identifiers.org/hgnc/26075
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3353
  bin: 8.25e1
  variant carriers: 3353
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 4.75e1
  variant carriers: 1592
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1182
  bin: 4.25e1
  variant carriers: 1164
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 1.75e1
  variant carriers: 294
genotype depth: GenotypeDepth
  all individuals: 3105
  bin: 9.25e1
  variant carriers: 3105
genotype depth: GenotypeDepth
  all individuals: 3005
  bin: 6.25e1
  variant carriers: 3004
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 3.25e1
  variant carriers: 723
genotype depth: GenotypeDepth
  all individuals: 3493
  bin: 7.75e1
  variant carriers: 3491
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 3.75e1
  variant carriers: 884
genotype depth: GenotypeDepth
  all individuals: 5552
  bin: 2.25e1
  variant carriers: 457
genotype depth: GenotypeDepth
  all individuals: 1729
  bin: 2.75e1
  variant carriers: 541
genotype depth: GenotypeDepth
  all individuals: 3350
  bin: 7.25e1
  variant carriers: 3347
genotype depth: GenotypeDepth
  all individuals: 2599
  bin: 5.75e1
  variant carriers: 2593
genotype depth: GenotypeDepth
  all individuals: 20604
  bin: 9.75e1
  variant carriers: 20597
genotype depth: GenotypeDepth
  all individuals: 3335
  bin: 8.75e1
  variant carriers: 3334
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 1.25e1
  variant carriers: 119
genotype depth: GenotypeDepth
  all individuals: 3268
  bin: 6.75e1
  variant carriers: 3267
genotype depth: GenotypeDepth
  all individuals: 2056
  bin: 5.25e1
  variant carriers: 2051
genotype quality: GenotypeQuality
hgvs: p.Gly10Glu
num of homozygotes: 29276
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: East Asian
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: FS

19-49954805-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49954805
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49954805
    reference: chr 19
allele count: 3
allele frequency: 2.472921509471289e-5
allele num: 121314
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000470445
  ensembl transcript: ENST00000596049
  gene symbol: PIH1D1
  hgvsc: ENST00000596049.1:c.27G>A
  hgvsp: ENSP00000470445.1:p.Met9Ile
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469793
  ensembl transcript: ENST00000597415
  gene symbol: PIH1D1
  hgvsc: ENST00000597415.1:c.-124G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469087
  ensembl transcript: ENST00000599366
  gene symbol: PIH1D1
  hgvsc: ENST00000599366.1:c.27G>A
  hgvsp: ENSP00000469087.1:p.Met9Ile
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000262265
  ensembl transcript: ENST00000262265
  gene symbol: PIH1D1
  hgvsc: ENST00000262265.5:c.27G>A
  hgvsp: ENSP00000262265.4:p.Met9Ile
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595516
  gene symbol: PIH1D1
  hgvsc: ENST00000595516.1:n.253G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000593900
  gene symbol: PIH1D1
  hgvsc: ENST00000593900.1:n.270G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469693
  ensembl transcript: ENST00000601807
  gene symbol: PIH1D1
  hgvsc: ENST00000601807.1:c.-124G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000471275
  ensembl transcript: ENST00000601825
  gene symbol: PIH1D1
  hgvsc: ENST00000601825.1:c.27G>A
  hgvsp: ENSP00000471275.1:p.Met9Ile
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000599791
  gene symbol: PIH1D1
  hgvsc: ENST00000599791.1:n.201G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000472571
  ensembl transcript: ENST00000595550
  gene symbol: PIH1D1
  hgvsc: ENST00000595550.1:c.-124G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595074
  gene symbol: PIH1D1
  hgvsc: ENST00000595074.1:n.244G>A
  variant of: http://identifiers.org/hgnc/26075
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2308
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2884
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3589
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3416
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3279
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5584
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3593
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3453
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1794
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3261
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1774
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18710
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3042
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met9Ile
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

19-49954806-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49954806
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49954806
    reference: chr 19
allele count: 6
allele frequency: 4.945924558164073e-5
allele num: 121312
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000593900
  gene symbol: PIH1D1
  hgvsc: ENST00000593900.1:n.269T>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469793
  ensembl transcript: ENST00000597415
  gene symbol: PIH1D1
  hgvsc: ENST00000597415.1:c.-125T>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000470445
  ensembl transcript: ENST00000596049
  gene symbol: PIH1D1
  hgvsc: ENST00000596049.1:c.26T>C
  hgvsp: ENSP00000470445.1:p.Met9Thr
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595516
  gene symbol: PIH1D1
  hgvsc: ENST00000595516.1:n.252T>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595074
  gene symbol: PIH1D1
  hgvsc: ENST00000595074.1:n.243T>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469693
  ensembl transcript: ENST00000601807
  gene symbol: PIH1D1
  hgvsc: ENST00000601807.1:c.-125T>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000471275
  ensembl transcript: ENST00000601825
  gene symbol: PIH1D1
  hgvsc: ENST00000601825.1:c.26T>C
  hgvsp: ENSP00000471275.1:p.Met9Thr
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000262265
  ensembl transcript: ENST00000262265
  gene symbol: PIH1D1
  hgvsc: ENST00000262265.5:c.26T>C
  hgvsp: ENSP00000262265.4:p.Met9Thr
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000472571
  ensembl transcript: ENST00000595550
  gene symbol: PIH1D1
  hgvsc: ENST00000595550.1:c.-125T>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000599791
  gene symbol: PIH1D1
  hgvsc: ENST00000599791.1:n.200T>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469087
  ensembl transcript: ENST00000599366
  gene symbol: PIH1D1
  hgvsc: ENST00000599366.1:c.26T>C
  hgvsp: ENSP00000469087.1:p.Met9Thr
  variant of: http://identifiers.org/hgnc/26075
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3589
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3042
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1773
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2884
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3593
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1794
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5584
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3454
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3278
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2308
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3259
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3416
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18712
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met9Thr
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: A
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

19-49954807-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49954807
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49954807
    reference: chr 19
allele count: 83065
allele frequency: 6.862380621922607e-1
allele num: 121044
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000593900
  gene symbol: PIH1D1
  hgvsc: ENST00000593900.1:n.268A>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595074
  gene symbol: PIH1D1
  hgvsc: ENST00000595074.1:n.242A>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000470445
  ensembl transcript: ENST00000596049
  gene symbol: PIH1D1
  hgvsc: ENST00000596049.1:c.25A>C
  hgvsp: ENSP00000470445.1:p.Met9Leu
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469693
  ensembl transcript: ENST00000601807
  gene symbol: PIH1D1
  hgvsc: ENST00000601807.1:c.-126A>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595516
  gene symbol: PIH1D1
  hgvsc: ENST00000595516.1:n.251A>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000471275
  ensembl transcript: ENST00000601825
  gene symbol: PIH1D1
  hgvsc: ENST00000601825.1:c.25A>C
  hgvsp: ENSP00000471275.1:p.Met9Leu
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000599791
  gene symbol: PIH1D1
  hgvsc: ENST00000599791.1:n.199A>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000262265
  ensembl transcript: ENST00000262265
  gene symbol: PIH1D1
  hgvsc: ENST00000262265.5:c.25A>C
  hgvsp: ENSP00000262265.4:p.Met9Leu
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469087
  ensembl transcript: ENST00000599366
  gene symbol: PIH1D1
  hgvsc: ENST00000599366.1:c.25A>C
  hgvsp: ENSP00000469087.1:p.Met9Leu
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000472571
  ensembl transcript: ENST00000595550
  gene symbol: PIH1D1
  hgvsc: ENST00000595550.1:c.-126A>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469793
  ensembl transcript: ENST00000597415
  gene symbol: PIH1D1
  hgvsc: ENST00000597415.1:c.-126A>C
  variant of: http://identifiers.org/hgnc/26075
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 1.25e1
  variant carriers: 128
genotype depth: GenotypeDepth
  all individuals: 17929
  bin: 9.75e1
  variant carriers: 17919
genotype depth: GenotypeDepth
  all individuals: 1795
  bin: 2.75e1
  variant carriers: 610
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 3.25e1
  variant carriers: 774
genotype depth: GenotypeDepth
  all individuals: 3378
  bin: 6.25e1
  variant carriers: 3378
genotype depth: GenotypeDepth
  all individuals: 3484
  bin: 8.25e1
  variant carriers: 3483
genotype depth: GenotypeDepth
  all individuals: 3715
  bin: 7.25e1
  variant carriers: 3711
genotype depth: GenotypeDepth
  all individuals: 5573
  bin: 2.25e1
  variant carriers: 485
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 2400
  bin: 5.25e1
  variant carriers: 2394
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 3.75e1
  variant carriers: 1001
genotype depth: GenotypeDepth
  all individuals: 1884
  bin: 4.75e1
  variant carriers: 1879
genotype depth: GenotypeDepth
  all individuals: 1414
  bin: 4.25e1
  variant carriers: 1396
genotype depth: GenotypeDepth
  all individuals: 3549
  bin: 6.75e1
  variant carriers: 3548
genotype depth: GenotypeDepth
  all individuals: 3272
  bin: 8.75e1
  variant carriers: 3271
genotype depth: GenotypeDepth
  all individuals: 3013
  bin: 9.25e1
  variant carriers: 3012
genotype depth: GenotypeDepth
  all individuals: 3570
  bin: 7.75e1
  variant carriers: 3568
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 1.75e1
  variant carriers: 322
genotype depth: GenotypeDepth
  all individuals: 3038
  bin: 5.75e1
  variant carriers: 3034
genotype quality: GenotypeQuality
hgvs: p.Met9Leu
num of homozygotes: 29273
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: DP

19-49954814-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49954814
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49954814
    reference: chr 19
allele count: 1
allele frequency: 8.279105194310599e-6
allele num: 120786
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469693
  ensembl transcript: ENST00000601807
  gene symbol: PIH1D1
  hgvsc: ENST00000601807.1:c.-133G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000599791
  gene symbol: PIH1D1
  hgvsc: ENST00000599791.1:n.192G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469793
  ensembl transcript: ENST00000597415
  gene symbol: PIH1D1
  hgvsc: ENST00000597415.1:c.-133G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000262265
  ensembl transcript: ENST00000262265
  gene symbol: PIH1D1
  hgvsc: ENST00000262265.5:c.18G>A
  hgvsp: ENST00000262265.5:c.18G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000472571
  ensembl transcript: ENST00000595550
  gene symbol: PIH1D1
  hgvsc: ENST00000595550.1:c.-133G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000471275
  ensembl transcript: ENST00000601825
  gene symbol: PIH1D1
  hgvsc: ENST00000601825.1:c.18G>A
  hgvsp: ENST00000601825.1:c.18G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000593900
  gene symbol: PIH1D1
  hgvsc: ENST00000593900.1:n.261G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000470445
  ensembl transcript: ENST00000596049
  gene symbol: PIH1D1
  hgvsc: ENST00000596049.1:c.18G>A
  hgvsp: ENST00000596049.1:c.18G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595516
  gene symbol: PIH1D1
  hgvsc: ENST00000595516.1:n.244G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595074
  gene symbol: PIH1D1
  hgvsc: ENST00000595074.1:n.235G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469087
  ensembl transcript: ENST00000599366
  gene symbol: PIH1D1
  hgvsc: ENST00000599366.1:c.18G>A
  hgvsp: ENST00000599366.1:c.18G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26075
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10691
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25330
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1914
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15183
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4450
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu6Leu
num of homozygotes: 0
population: African
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum

19-49954821-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49954821
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49954821
    reference: chr 19
allele count: 1
allele frequency: 8.2917364554485e-6
allele num: 120602
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000471275
  ensembl transcript: ENST00000601825
  gene symbol: PIH1D1
  hgvsc: ENST00000601825.1:c.11C>T
  hgvsp: ENSP00000471275.1:p.Pro4Leu
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000262265
  ensembl transcript: ENST00000262265
  gene symbol: PIH1D1
  hgvsc: ENST00000262265.5:c.11C>T
  hgvsp: ENSP00000262265.4:p.Pro4Leu
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000599791
  gene symbol: PIH1D1
  hgvsc: ENST00000599791.1:n.185C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595516
  gene symbol: PIH1D1
  hgvsc: ENST00000595516.1:n.237C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469693
  ensembl transcript: ENST00000601807
  gene symbol: PIH1D1
  hgvsc: ENST00000601807.1:c.-140C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469087
  ensembl transcript: ENST00000599366
  gene symbol: PIH1D1
  hgvsc: ENST00000599366.1:c.11C>T
  hgvsp: ENSP00000469087.1:p.Pro4Leu
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595074
  gene symbol: PIH1D1
  hgvsc: ENST00000595074.1:n.228C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000472571
  ensembl transcript: ENST00000595550
  gene symbol: PIH1D1
  hgvsc: ENST00000595550.1:c.-140C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000470445
  ensembl transcript: ENST00000596049
  gene symbol: PIH1D1
  hgvsc: ENST00000596049.1:c.11C>T
  hgvsp: ENSP00000470445.1:p.Pro4Leu
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469793
  ensembl transcript: ENST00000597415
  gene symbol: PIH1D1
  hgvsc: ENST00000597415.1:c.-140C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000593900
  gene symbol: PIH1D1
  hgvsc: ENST00000593900.1:n.254C>T
  variant of: http://identifiers.org/hgnc/26075
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10677
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25225
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1908
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4436
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15099
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Pro4Leu
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum

19-49954832-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49954832
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49954832
    reference: chr 19
allele count: 42
allele frequency: 3.496445280631358e-4
allele num: 120122
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000599791
  gene symbol: PIH1D1
  hgvsc: ENST00000599791.1:n.174C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469087
  ensembl transcript: ENST00000599366
  gene symbol: PIH1D1
  hgvsc: ENST00000599366.1:c.-1C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595074
  gene symbol: PIH1D1
  hgvsc: ENST00000595074.1:n.217C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000262265
  ensembl transcript: ENST00000262265
  gene symbol: PIH1D1
  hgvsc: ENST00000262265.5:c.-1C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000593900
  gene symbol: PIH1D1
  hgvsc: ENST00000593900.1:n.243C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469693
  ensembl transcript: ENST00000601807
  gene symbol: PIH1D1
  hgvsc: ENST00000601807.1:c.-151C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000470445
  ensembl transcript: ENST00000596049
  gene symbol: PIH1D1
  hgvsc: ENST00000596049.1:c.-1C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469793
  ensembl transcript: ENST00000597415
  gene symbol: PIH1D1
  hgvsc: ENST00000597415.1:c.-151C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595516
  gene symbol: PIH1D1
  hgvsc: ENST00000595516.1:n.226C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000472571
  ensembl transcript: ENST00000595550
  gene symbol: PIH1D1
  hgvsc: ENST00000595550.1:c.-151C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000471275
  ensembl transcript: ENST00000601825
  gene symbol: PIH1D1
  hgvsc: ENST00000601825.1:c.-1C>T
  variant of: http://identifiers.org/hgnc/26075
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24890
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1875
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14762
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 10709
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4353
  bin: 3.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

19-49954835-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49954835
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49954835
    reference: chr 19
allele count: 2
allele frequency: 1.66761164659974e-5
allele num: 119932
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000472571
  ensembl transcript: ENST00000595550
  gene symbol: PIH1D1
  hgvsc: ENST00000595550.1:c.-154G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000593900
  gene symbol: PIH1D1
  hgvsc: ENST00000593900.1:n.240G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595516
  gene symbol: PIH1D1
  hgvsc: ENST00000595516.1:n.223G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469087
  ensembl transcript: ENST00000599366
  gene symbol: PIH1D1
  hgvsc: ENST00000599366.1:c.-4G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000599791
  gene symbol: PIH1D1
  hgvsc: ENST00000599791.1:n.171G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595074
  gene symbol: PIH1D1
  hgvsc: ENST00000595074.1:n.214G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000470445
  ensembl transcript: ENST00000596049
  gene symbol: PIH1D1
  hgvsc: ENST00000596049.1:c.-4G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000262265
  ensembl transcript: ENST00000262265
  gene symbol: PIH1D1
  hgvsc: ENST00000262265.5:c.-4G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469693
  ensembl transcript: ENST00000601807
  gene symbol: PIH1D1
  hgvsc: ENST00000601807.1:c.-154G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469793
  ensembl transcript: ENST00000597415
  gene symbol: PIH1D1
  hgvsc: ENST00000597415.1:c.-154G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000471275
  ensembl transcript: ENST00000601825
  gene symbol: PIH1D1
  hgvsc: ENST00000601825.1:c.-4G>A
  variant of: http://identifiers.org/hgnc/26075
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4305
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10714
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24815
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14612
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1228
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1859
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2534
  bin: 7.25e1
  variant carriers: 0
hgvs: c.-4G>A
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

19-49954848-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49954848
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49954848
    reference: chr 19
allele count: 1
allele frequency: 8.440243079000674e-6
allele num: 118480
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595516
  gene symbol: PIH1D1
  hgvsc: ENST00000595516.1:n.210A>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469793
  ensembl transcript: ENST00000597415
  gene symbol: PIH1D1
  hgvsc: ENST00000597415.1:c.-154-13A>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000472571
  ensembl transcript: ENST00000595550
  gene symbol: PIH1D1
  hgvsc: ENST00000595550.1:c.-167A>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469087
  ensembl transcript: ENST00000599366
  gene symbol: PIH1D1
  hgvsc: ENST00000599366.1:c.-4-13A>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469693
  ensembl transcript: ENST00000601807
  gene symbol: PIH1D1
  hgvsc: ENST00000601807.1:c.-167A>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000262265
  ensembl transcript: ENST00000262265
  gene symbol: PIH1D1
  hgvsc: ENST00000262265.5:c.-17A>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000470445
  ensembl transcript: ENST00000596049
  gene symbol: PIH1D1
  hgvsc: ENST00000596049.1:c.-4-13A>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595074
  gene symbol: PIH1D1
  hgvsc: ENST00000595074.1:n.201A>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000471275
  ensembl transcript: ENST00000601825
  gene symbol: PIH1D1
  hgvsc: ENST00000601825.1:c.-17A>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000593900
  gene symbol: PIH1D1
  hgvsc: ENST00000593900.1:n.227A>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000599791
  gene symbol: PIH1D1
  hgvsc: ENST00000599791.1:n.158A>C
  variant of: http://identifiers.org/hgnc/26075
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4056
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13221
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1265
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22743
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10316
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3805
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1059
  bin: 9.25e1
  variant carriers: 0
hgvs: c.-17A>C
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/19-49954854-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49954854
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49954854
    reference: chr 19
allele count: 1
allele frequency: 8.499932000543996e-6
allele num: 117648
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469693
  ensembl transcript: ENST00000601807
  gene symbol: PIH1D1
  hgvsc: ENST00000601807.1:c.-173G>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595074
  gene symbol: PIH1D1
  hgvsc: ENST00000595074.1:n.195G>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000593900
  gene symbol: PIH1D1
  hgvsc: ENST00000593900.1:n.221G>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000262265
  ensembl transcript: ENST00000262265
  gene symbol: PIH1D1
  hgvsc: ENST00000262265.5:c.-23G>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469087
  ensembl transcript: ENST00000599366
  gene symbol: PIH1D1
  hgvsc: ENST00000599366.1:c.-4-19G>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000599791
  gene symbol: PIH1D1
  hgvsc: ENST00000599791.1:n.152G>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000472571
  ensembl transcript: ENST00000595550
  gene symbol: PIH1D1
  hgvsc: ENST00000595550.1:c.-173G>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000470445
  ensembl transcript: ENST00000596049
  gene symbol: PIH1D1
  hgvsc: ENST00000596049.1:c.-4-19G>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469793
  ensembl transcript: ENST00000597415
  gene symbol: PIH1D1
  hgvsc: ENST00000597415.1:c.-154-19G>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000471275
  ensembl transcript: ENST00000601825
  gene symbol: PIH1D1
  hgvsc: ENST00000601825.1:c.-17-6G>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595516
  gene symbol: PIH1D1
  hgvsc: ENST00000595516.1:n.204G>T
  variant of: http://identifiers.org/hgnc/26075
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20856
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11599
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3713
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2648
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10217
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1742
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6071
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1728
  bin: 8.25e1
  variant carriers: 0
hgvs: c.-17-6G>T
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: BaseQRankSum

19-49954854-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49954854
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49954854
    reference: chr 19
allele count: 1
allele frequency: 8.499932000543996e-6
allele num: 117648
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469693
  ensembl transcript: ENST00000601807
  gene symbol: PIH1D1
  hgvsc: ENST00000601807.1:c.-173G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469087
  ensembl transcript: ENST00000599366
  gene symbol: PIH1D1
  hgvsc: ENST00000599366.1:c.-4-19G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000593900
  gene symbol: PIH1D1
  hgvsc: ENST00000593900.1:n.221G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000262265
  ensembl transcript: ENST00000262265
  gene symbol: PIH1D1
  hgvsc: ENST00000262265.5:c.-23G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595074
  gene symbol: PIH1D1
  hgvsc: ENST00000595074.1:n.195G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000472571
  ensembl transcript: ENST00000595550
  gene symbol: PIH1D1
  hgvsc: ENST00000595550.1:c.-173G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000471275
  ensembl transcript: ENST00000601825
  gene symbol: PIH1D1
  hgvsc: ENST00000601825.1:c.-17-6G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595516
  gene symbol: PIH1D1
  hgvsc: ENST00000595516.1:n.204G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000470445
  ensembl transcript: ENST00000596049
  gene symbol: PIH1D1
  hgvsc: ENST00000596049.1:c.-4-19G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000599791
  gene symbol: PIH1D1
  hgvsc: ENST00000599791.1:n.152G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469793
  ensembl transcript: ENST00000597415
  gene symbol: PIH1D1
  hgvsc: ENST00000597415.1:c.-154-19G>A
  variant of: http://identifiers.org/hgnc/26075
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3713
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11599
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2648
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10217
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20856
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6071
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1742
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 4.75e1
  variant carriers: 0
hgvs: c.-17-6G>A
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

19-49954854-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49954854
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49954854
    reference: chr 19
allele count: 1
allele frequency: 8.499932000543996e-6
allele num: 117648
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595516
  gene symbol: PIH1D1
  hgvsc: ENST00000595516.1:n.204G>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000599791
  gene symbol: PIH1D1
  hgvsc: ENST00000599791.1:n.152G>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000471275
  ensembl transcript: ENST00000601825
  gene symbol: PIH1D1
  hgvsc: ENST00000601825.1:c.-17-6G>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469087
  ensembl transcript: ENST00000599366
  gene symbol: PIH1D1
  hgvsc: ENST00000599366.1:c.-4-19G>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000262265
  ensembl transcript: ENST00000262265
  gene symbol: PIH1D1
  hgvsc: ENST00000262265.5:c.-23G>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469793
  ensembl transcript: ENST00000597415
  gene symbol: PIH1D1
  hgvsc: ENST00000597415.1:c.-154-19G>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469693
  ensembl transcript: ENST00000601807
  gene symbol: PIH1D1
  hgvsc: ENST00000601807.1:c.-173G>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000472571
  ensembl transcript: ENST00000595550
  gene symbol: PIH1D1
  hgvsc: ENST00000595550.1:c.-173G>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000470445
  ensembl transcript: ENST00000596049
  gene symbol: PIH1D1
  hgvsc: ENST00000596049.1:c.-4-19G>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000593900
  gene symbol: PIH1D1
  hgvsc: ENST00000593900.1:n.221G>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595074
  gene symbol: PIH1D1
  hgvsc: ENST00000595074.1:n.195G>C
  variant of: http://identifiers.org/hgnc/26075
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20856
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2648
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6071
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10217
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3713
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11599
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1742
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1044
  bin: 9.25e1
  variant carriers: 0
hgvs: c.-17-6G>C
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum

19-49954855-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49954855
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49954855
    reference: chr 19
allele count: 1
allele frequency: 8.507452528414892e-6
allele num: 117544
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000593900
  gene symbol: PIH1D1
  hgvsc: ENST00000593900.1:n.220C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000599791
  gene symbol: PIH1D1
  hgvsc: ENST00000599791.1:n.151C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000472571
  ensembl transcript: ENST00000595550
  gene symbol: PIH1D1
  hgvsc: ENST00000595550.1:c.-174C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469693
  ensembl transcript: ENST00000601807
  gene symbol: PIH1D1
  hgvsc: ENST00000601807.1:c.-174C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000262265
  ensembl transcript: ENST00000262265
  gene symbol: PIH1D1
  hgvsc: ENST00000262265.5:c.-24C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469793
  ensembl transcript: ENST00000597415
  gene symbol: PIH1D1
  hgvsc: ENST00000597415.1:c.-154-20C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595516
  gene symbol: PIH1D1
  hgvsc: ENST00000595516.1:n.203C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595074
  gene symbol: PIH1D1
  hgvsc: ENST00000595074.1:n.194C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000471275
  ensembl transcript: ENST00000601825
  gene symbol: PIH1D1
  hgvsc: ENST00000601825.1:c.-17-7C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469087
  ensembl transcript: ENST00000599366
  gene symbol: PIH1D1
  hgvsc: ENST00000599366.1:c.-4-20C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000470445
  ensembl transcript: ENST00000596049
  gene symbol: PIH1D1
  hgvsc: ENST00000596049.1:c.-4-20C>T
  variant of: http://identifiers.org/hgnc/26075
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6368
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2846
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20655
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3654
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10205
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1721
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11367
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2973
  bin: 9.75e1
  variant carriers: 1
hgvs: c.-17-7C>T
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

19-49954857-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49954857
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49954857
    reference: chr 19
allele count: 1
allele frequency: 8.541314337450248e-6
allele num: 117078
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000593900
  gene symbol: PIH1D1
  hgvsc: ENST00000593900.1:n.218G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595074
  gene symbol: PIH1D1
  hgvsc: ENST00000595074.1:n.192G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000262265
  ensembl transcript: ENST00000262265
  gene symbol: PIH1D1
  hgvsc: ENST00000262265.5:c.-26G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000472571
  ensembl transcript: ENST00000595550
  gene symbol: PIH1D1
  hgvsc: ENST00000595550.1:c.-176G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469693
  ensembl transcript: ENST00000601807
  gene symbol: PIH1D1
  hgvsc: ENST00000601807.1:c.-176G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469087
  ensembl transcript: ENST00000599366
  gene symbol: PIH1D1
  hgvsc: ENST00000599366.1:c.-4-22G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595516
  gene symbol: PIH1D1
  hgvsc: ENST00000595516.1:n.201G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000470445
  ensembl transcript: ENST00000596049
  gene symbol: PIH1D1
  hgvsc: ENST00000596049.1:c.-4-22G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469793
  ensembl transcript: ENST00000597415
  gene symbol: PIH1D1
  hgvsc: ENST00000597415.1:c.-154-22G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000471275
  ensembl transcript: ENST00000601825
  gene symbol: PIH1D1
  hgvsc: ENST00000601825.1:c.-17-9G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000599791
  gene symbol: PIH1D1
  hgvsc: ENST00000599791.1:n.149G>A
  variant of: http://identifiers.org/hgnc/26075
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3473
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9940
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4343
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10368
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19100
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7697
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1695
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1694
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1893
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum

19-49954860-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49954860
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49954860
    reference: chr 19
allele count: 1
allele frequency: 8.552271483305966e-6
allele num: 116928
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000470445
  ensembl transcript: ENST00000596049
  gene symbol: PIH1D1
  hgvsc: ENST00000596049.1:c.-4-25G>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595516
  gene symbol: PIH1D1
  hgvsc: ENST00000595516.1:n.198G>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000471275
  ensembl transcript: ENST00000601825
  gene symbol: PIH1D1
  hgvsc: ENST00000601825.1:c.-17-12G>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000593900
  gene symbol: PIH1D1
  hgvsc: ENST00000593900.1:n.215G>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595074
  gene symbol: PIH1D1
  hgvsc: ENST00000595074.1:n.189G>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469793
  ensembl transcript: ENST00000597415
  gene symbol: PIH1D1
  hgvsc: ENST00000597415.1:c.-154-25G>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000472571
  ensembl transcript: ENST00000595550
  gene symbol: PIH1D1
  hgvsc: ENST00000595550.1:c.-179G>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000262265
  ensembl transcript: ENST00000262265
  gene symbol: PIH1D1
  hgvsc: ENST00000262265.5:c.-29G>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000599791
  gene symbol: PIH1D1
  hgvsc: ENST00000599791.1:n.146G>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469087
  ensembl transcript: ENST00000599366
  gene symbol: PIH1D1
  hgvsc: ENST00000599366.1:c.-4-25G>C
  variant of: http://identifiers.org/hgnc/26075
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1733
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19170
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4311
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10190
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7747
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10059
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3426
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1675
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1887
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27686
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2004
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2643
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

19-49954861-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49954861
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49954861
    reference: chr 19
allele count: 1
allele frequency: 8.56179044161715e-6
allele num: 116798
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000471275
  ensembl transcript: ENST00000601825
  gene symbol: PIH1D1
  hgvsc: ENST00000601825.1:c.-17-13C>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469087
  ensembl transcript: ENST00000599366
  gene symbol: PIH1D1
  hgvsc: ENST00000599366.1:c.-4-26C>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595074
  gene symbol: PIH1D1
  hgvsc: ENST00000595074.1:n.188C>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000262265
  ensembl transcript: ENST00000262265
  gene symbol: PIH1D1
  hgvsc: ENST00000262265.5:c.-30C>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000470445
  ensembl transcript: ENST00000596049
  gene symbol: PIH1D1
  hgvsc: ENST00000596049.1:c.-4-26C>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000593900
  gene symbol: PIH1D1
  hgvsc: ENST00000593900.1:n.214C>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595516
  gene symbol: PIH1D1
  hgvsc: ENST00000595516.1:n.197C>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000472571
  ensembl transcript: ENST00000595550
  gene symbol: PIH1D1
  hgvsc: ENST00000595550.1:c.-180C>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000599791
  gene symbol: PIH1D1
  hgvsc: ENST00000599791.1:n.145C>G
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469793
  ensembl transcript: ENST00000597415
  gene symbol: PIH1D1
  hgvsc: ENST00000597415.1:c.-154-26C>G
  variant of: http://identifiers.org/hgnc/26075
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9680
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8058
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10089
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5022
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1663
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18614
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3365
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6105
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26786
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/19-49954865-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49954865
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49954865
    reference: chr 19
allele count: 2
allele frequency: 1.719897494109351e-5
allele num: 116286
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469793
  ensembl transcript: ENST00000597415
  gene symbol: PIH1D1
  hgvsc: ENST00000597415.1:c.-154-30G>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000593900
  gene symbol: PIH1D1
  hgvsc: ENST00000593900.1:n.210G>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000599791
  gene symbol: PIH1D1
  hgvsc: ENST00000599791.1:n.141G>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000471275
  ensembl transcript: ENST00000601825
  gene symbol: PIH1D1
  hgvsc: ENST00000601825.1:c.-17-17G>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000262265
  ensembl transcript: ENST00000262265
  gene symbol: PIH1D1
  hgvsc: ENST00000262265.5:c.-34G>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000472571
  ensembl transcript: ENST00000595550
  gene symbol: PIH1D1
  hgvsc: ENST00000595550.1:c.-184G>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595074
  gene symbol: PIH1D1
  hgvsc: ENST00000595074.1:n.184G>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595516
  gene symbol: PIH1D1
  hgvsc: ENST00000595516.1:n.193G>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469087
  ensembl transcript: ENST00000599366
  gene symbol: PIH1D1
  hgvsc: ENST00000599366.1:c.-4-30G>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000470445
  ensembl transcript: ENST00000596049
  gene symbol: PIH1D1
  hgvsc: ENST00000596049.1:c.-4-30G>T
  variant of: http://identifiers.org/hgnc/26075
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8812
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16120
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3253
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8282
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8611
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1942
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1638
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9531
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1648
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2732
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6434
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 731
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

19-49954871-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49954871
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49954871
    reference: chr 19
allele count: 1
allele frequency: 8.687493484379887e-6
allele num: 115108
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000262265
  ensembl transcript: ENST00000262265
  gene symbol: PIH1D1
  hgvsc: ENST00000262265.5:c.-40T>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595074
  gene symbol: PIH1D1
  hgvsc: ENST00000595074.1:n.178T>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000472571
  ensembl transcript: ENST00000595550
  gene symbol: PIH1D1
  hgvsc: ENST00000595550.1:c.-190T>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000593900
  gene symbol: PIH1D1
  hgvsc: ENST00000593900.1:n.204T>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469793
  ensembl transcript: ENST00000597415
  gene symbol: PIH1D1
  hgvsc: ENST00000597415.1:c.-154-36T>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000599791
  gene symbol: PIH1D1
  hgvsc: ENST00000599791.1:n.135T>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000470445
  ensembl transcript: ENST00000596049
  gene symbol: PIH1D1
  hgvsc: ENST00000596049.1:c.-4-36T>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469087
  ensembl transcript: ENST00000599366
  gene symbol: PIH1D1
  hgvsc: ENST00000599366.1:c.-4-36T>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595516
  gene symbol: PIH1D1
  hgvsc: ENST00000595516.1:n.187T>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000471275
  ensembl transcript: ENST00000601825
  gene symbol: PIH1D1
  hgvsc: ENST00000601825.1:c.-17-23T>C
  variant of: http://identifiers.org/hgnc/26075
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10083
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8781
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2410
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1609
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6947
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12794
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12415
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3066
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1749
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 722
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2072
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2428
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Other
population: Latino
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum

19-49954873-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49954873
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49954873
    reference: chr 19
allele count: 7
allele frequency: 6.099686301847334e-5
allele num: 114760
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000599791
  gene symbol: PIH1D1
  hgvsc: ENST00000599791.1:n.133C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000471275
  ensembl transcript: ENST00000601825
  gene symbol: PIH1D1
  hgvsc: ENST00000601825.1:c.-17-25C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000262265
  ensembl transcript: ENST00000262265
  gene symbol: PIH1D1
  hgvsc: ENST00000262265.5:c.-42C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469087
  ensembl transcript: ENST00000599366
  gene symbol: PIH1D1
  hgvsc: ENST00000599366.1:c.-4-38C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595516
  gene symbol: PIH1D1
  hgvsc: ENST00000595516.1:n.185C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000593900
  gene symbol: PIH1D1
  hgvsc: ENST00000593900.1:n.202C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000472571
  ensembl transcript: ENST00000595550
  gene symbol: PIH1D1
  hgvsc: ENST00000595550.1:c.-192C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000470445
  ensembl transcript: ENST00000596049
  gene symbol: PIH1D1
  hgvsc: ENST00000596049.1:c.-4-38C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595074
  gene symbol: PIH1D1
  hgvsc: ENST00000595074.1:n.176C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469793
  ensembl transcript: ENST00000597415
  gene symbol: PIH1D1
  hgvsc: ENST00000597415.1:c.-154-38C>T
  variant of: http://identifiers.org/hgnc/26075
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6649
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1603
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12690
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12241
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8771
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2516
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10589
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3037
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1610
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3066
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 782
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17414
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

19-49954873-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49954873
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49954873
    reference: chr 19
allele count: 1
allele frequency: 8.713837574067619e-6
allele num: 114760
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000470445
  ensembl transcript: ENST00000596049
  gene symbol: PIH1D1
  hgvsc: ENST00000596049.1:c.-4-38C>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469793
  ensembl transcript: ENST00000597415
  gene symbol: PIH1D1
  hgvsc: ENST00000597415.1:c.-154-38C>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595074
  gene symbol: PIH1D1
  hgvsc: ENST00000595074.1:n.176C>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000593900
  gene symbol: PIH1D1
  hgvsc: ENST00000593900.1:n.202C>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595516
  gene symbol: PIH1D1
  hgvsc: ENST00000595516.1:n.185C>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000599791
  gene symbol: PIH1D1
  hgvsc: ENST00000599791.1:n.133C>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000472571
  ensembl transcript: ENST00000595550
  gene symbol: PIH1D1
  hgvsc: ENST00000595550.1:c.-192C>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000262265
  ensembl transcript: ENST00000262265
  gene symbol: PIH1D1
  hgvsc: ENST00000262265.5:c.-42C>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000471275
  ensembl transcript: ENST00000601825
  gene symbol: PIH1D1
  hgvsc: ENST00000601825.1:c.-17-25C>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469087
  ensembl transcript: ENST00000599366
  gene symbol: PIH1D1
  hgvsc: ENST00000599366.1:c.-4-38C>A
  variant of: http://identifiers.org/hgnc/26075
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12241
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10589
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6649
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3037
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1603
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8771
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2516
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12690
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5217
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2275
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 951
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6291
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

19-49954881-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49954881
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49954881
    reference: chr 19
allele count: 244
allele frequency: 2.160592214784118e-3
allele num: 112932
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000470445
  ensembl transcript: ENST00000596049
  gene symbol: PIH1D1
  hgvsc: ENST00000596049.1:c.-4-46G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000471275
  ensembl transcript: ENST00000601825
  gene symbol: PIH1D1
  hgvsc: ENST00000601825.1:c.-17-33G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000262265
  ensembl transcript: ENST00000262265
  gene symbol: PIH1D1
  hgvsc: ENST00000262265.5:c.-50G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000599791
  gene symbol: PIH1D1
  hgvsc: ENST00000599791.1:n.125G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000472571
  ensembl transcript: ENST00000595550
  gene symbol: PIH1D1
  hgvsc: ENST00000595550.1:c.-200G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000593900
  gene symbol: PIH1D1
  hgvsc: ENST00000593900.1:n.194G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469793
  ensembl transcript: ENST00000597415
  gene symbol: PIH1D1
  hgvsc: ENST00000597415.1:c.-154-46G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595074
  gene symbol: PIH1D1
  hgvsc: ENST00000595074.1:n.168G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595516
  gene symbol: PIH1D1
  hgvsc: ENST00000595516.1:n.177G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469087
  ensembl transcript: ENST00000599366
  gene symbol: PIH1D1
  hgvsc: ENST00000599366.1:c.-4-46G>A
  variant of: http://identifiers.org/hgnc/26075
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3138
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9227
  bin: 2.75e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8415
  bin: 1.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 4.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14724
  bin: 2.25e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 12443
  bin: 1.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1603
  bin: 4.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5529
  bin: 3.25e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2981
  bin: 3.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 715
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 864
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10598
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1582
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 3
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: Other
population: European (Finnish)
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

19-49954881-CTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49954881
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49954879
    reference: chr 19
allele count: 2
allele frequency: 1.770977225232884e-5
allele num: 112932
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000599791
  gene symbol: PIH1D1
  hgvsc: ENST00000599791.1:n.123_124delAA
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000262265
  ensembl transcript: ENST00000262265
  gene symbol: PIH1D1
  hgvsc: ENST00000262265.5:c.-52_-51delAA
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469793
  ensembl transcript: ENST00000597415
  gene symbol: PIH1D1
  hgvsc: ENST00000597415.1:c.-154-48_-154-47delAA
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000470445
  ensembl transcript: ENST00000596049
  gene symbol: PIH1D1
  hgvsc: ENST00000596049.1:c.-4-48_-4-47delAA
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000472571
  ensembl transcript: ENST00000595550
  gene symbol: PIH1D1
  hgvsc: ENST00000595550.1:c.-202_-201delAA
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595074
  gene symbol: PIH1D1
  hgvsc: ENST00000595074.1:n.166_167delAA
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469087
  ensembl transcript: ENST00000599366
  gene symbol: PIH1D1
  hgvsc: ENST00000599366.1:c.-4-48_-4-47delAA
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000593900
  gene symbol: PIH1D1
  hgvsc: ENST00000593900.1:n.192_193delAA
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000104872
  ensembl transcript: ENST00000595516
  gene symbol: PIH1D1
  hgvsc: ENST00000595516.1:n.175_176delAA
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000471275
  ensembl transcript: ENST00000601825
  gene symbol: PIH1D1
  hgvsc: ENST00000601825.1:c.-17-35_-17-34delAA
  variant of: http://identifiers.org/hgnc/26075
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3138
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2981
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5529
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14724
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9227
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8415
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1603
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12443
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5696
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10598
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3068
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: CTT
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: QD

19-49956545-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49956545
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49956545
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 14390
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000398675
  ensembl transcript: ENST00000433981
  gene symbol: ALDH16A1
  hgvsc: ENST00000433981.2:c.-309A>G
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000470445
  ensembl transcript: ENST00000596049
  gene symbol: PIH1D1
  hgvsc: ENST00000596049.1:c.-5+105T>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000410142
  ensembl transcript: ENST00000455361
  gene symbol: ALDH16A1
  hgvsc: ENST00000455361.2:c.-44A>G
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469087
  ensembl transcript: ENST00000599366
  gene symbol: PIH1D1
  hgvsc: ENST00000599366.1:c.-5+88T>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000470160
  ensembl transcript: ENST00000593417
  gene symbol: ALDH16A1
  hgvsc: ENST00000593417.1:c.-44A>G
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000445088
  ensembl transcript: ENST00000540132
  gene symbol: ALDH16A1
  hgvsc: ENST00000540132.1:c.-124A>G
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000471275
  ensembl transcript: ENST00000601825
  gene symbol: PIH1D1
  hgvsc: ENST00000601825.1:c.-18+88T>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469793
  ensembl transcript: ENST00000597415
  gene symbol: PIH1D1
  hgvsc: ENST00000597415.1:c.-173T>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000293350
  ensembl transcript: ENST00000293350
  gene symbol: ALDH16A1
  hgvsc: ENST00000293350.4:c.-44A>G
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000599652
  gene symbol: ALDH16A1
  hgvsc: ENST00000599652.1:n.63A>G
  variant of: http://identifiers.org/hgnc/28114
canonical: true
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 3746
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18024
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31810
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6837
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5190
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1172
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/19-49956546-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49956546
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49956546
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 14254
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000599652
  gene symbol: ALDH16A1
  hgvsc: ENST00000599652.1:n.64C>A
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000445088
  ensembl transcript: ENST00000540132
  gene symbol: ALDH16A1
  hgvsc: ENST00000540132.1:c.-123C>A
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000293350
  ensembl transcript: ENST00000293350
  gene symbol: ALDH16A1
  hgvsc: ENST00000293350.4:c.-43C>A
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000471275
  ensembl transcript: ENST00000601825
  gene symbol: PIH1D1
  hgvsc: ENST00000601825.1:c.-18+87G>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000470160
  ensembl transcript: ENST00000593417
  gene symbol: ALDH16A1
  hgvsc: ENST00000593417.1:c.-43C>A
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000398675
  ensembl transcript: ENST00000433981
  gene symbol: ALDH16A1
  hgvsc: ENST00000433981.2:c.-308C>A
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000470445
  ensembl transcript: ENST00000596049
  gene symbol: PIH1D1
  hgvsc: ENST00000596049.1:c.-5+104G>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469087
  ensembl transcript: ENST00000599366
  gene symbol: PIH1D1
  hgvsc: ENST00000599366.1:c.-5+87G>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000410142
  ensembl transcript: ENST00000455361
  gene symbol: ALDH16A1
  hgvsc: ENST00000455361.2:c.-43C>A
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469793
  ensembl transcript: ENST00000597415
  gene symbol: PIH1D1
  hgvsc: ENST00000597415.1:c.-174G>T
  variant of: http://identifiers.org/hgnc/26075
canonical: true
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18192
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31662
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1408
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3723
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 973
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3348
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: VQSLOD

19-49956547-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49956547
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49956547
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 14436
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469793
  ensembl transcript: ENST00000597415
  gene symbol: PIH1D1
  hgvsc: ENST00000597415.1:c.-175T>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000445088
  ensembl transcript: ENST00000540132
  gene symbol: ALDH16A1
  hgvsc: ENST00000540132.1:c.-122A>G
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000410142
  ensembl transcript: ENST00000455361
  gene symbol: ALDH16A1
  hgvsc: ENST00000455361.2:c.-42A>G
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000293350
  ensembl transcript: ENST00000293350
  gene symbol: ALDH16A1
  hgvsc: ENST00000293350.4:c.-42A>G
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000471275
  ensembl transcript: ENST00000601825
  gene symbol: PIH1D1
  hgvsc: ENST00000601825.1:c.-18+86T>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000599652
  gene symbol: ALDH16A1
  hgvsc: ENST00000599652.1:n.65A>G
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469087
  ensembl transcript: ENST00000599366
  gene symbol: PIH1D1
  hgvsc: ENST00000599366.1:c.-5+86T>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000470160
  ensembl transcript: ENST00000593417
  gene symbol: ALDH16A1
  hgvsc: ENST00000593417.1:c.-42A>G
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000470445
  ensembl transcript: ENST00000596049
  gene symbol: PIH1D1
  hgvsc: ENST00000596049.1:c.-5+103T>C
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000398675
  ensembl transcript: ENST00000433981
  gene symbol: ALDH16A1
  hgvsc: ENST00000433981.2:c.-307A>G
  variant of: http://identifiers.org/hgnc/28114
canonical: true
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18413
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31520
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1381
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3710
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4451
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: African
reference allele: A
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

19-49956548-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49956548
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49956548
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 14410
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000293350
  ensembl transcript: ENST00000293350
  gene symbol: ALDH16A1
  hgvsc: ENST00000293350.4:c.-41G>A
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000410142
  ensembl transcript: ENST00000455361
  gene symbol: ALDH16A1
  hgvsc: ENST00000455361.2:c.-41G>A
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000471275
  ensembl transcript: ENST00000601825
  gene symbol: PIH1D1
  hgvsc: ENST00000601825.1:c.-18+85C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000470160
  ensembl transcript: ENST00000593417
  gene symbol: ALDH16A1
  hgvsc: ENST00000593417.1:c.-41G>A
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469793
  ensembl transcript: ENST00000597415
  gene symbol: PIH1D1
  hgvsc: ENST00000597415.1:c.-176C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469087
  ensembl transcript: ENST00000599366
  gene symbol: PIH1D1
  hgvsc: ENST00000599366.1:c.-5+85C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000445088
  ensembl transcript: ENST00000540132
  gene symbol: ALDH16A1
  hgvsc: ENST00000540132.1:c.-121G>A
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000470445
  ensembl transcript: ENST00000596049
  gene symbol: PIH1D1
  hgvsc: ENST00000596049.1:c.-5+102C>T
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000599652
  gene symbol: ALDH16A1
  hgvsc: ENST00000599652.1:n.66G>A
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000398675
  ensembl transcript: ENST00000433981
  gene symbol: ALDH16A1
  hgvsc: ENST00000433981.2:c.-306G>A
  variant of: http://identifiers.org/hgnc/28114
canonical: true
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18604
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31352
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3700
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1265
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6335
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12105
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 958
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

19-49956552-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49956552
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49956552
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 14612
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000470445
  ensembl transcript: ENST00000596049
  gene symbol: PIH1D1
  hgvsc: ENST00000596049.1:c.-5+98C>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469793
  ensembl transcript: ENST00000597415
  gene symbol: PIH1D1
  hgvsc: ENST00000597415.1:c.-180C>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000470160
  ensembl transcript: ENST00000593417
  gene symbol: ALDH16A1
  hgvsc: ENST00000593417.1:c.-37G>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000398675
  ensembl transcript: ENST00000433981
  gene symbol: ALDH16A1
  hgvsc: ENST00000433981.2:c.-302G>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000471275
  ensembl transcript: ENST00000601825
  gene symbol: PIH1D1
  hgvsc: ENST00000601825.1:c.-18+81C>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000293350
  ensembl transcript: ENST00000293350
  gene symbol: ALDH16A1
  hgvsc: ENST00000293350.4:c.-37G>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000410142
  ensembl transcript: ENST00000455361
  gene symbol: ALDH16A1
  hgvsc: ENST00000455361.2:c.-37G>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469087
  ensembl transcript: ENST00000599366
  gene symbol: PIH1D1
  hgvsc: ENST00000599366.1:c.-5+81C>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000445088
  ensembl transcript: ENST00000540132
  gene symbol: ALDH16A1
  hgvsc: ENST00000540132.1:c.-117G>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000599652
  gene symbol: ALDH16A1
  hgvsc: ENST00000599652.1:n.70G>T
  variant of: http://identifiers.org/hgnc/28114
canonical: true
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3638
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1735
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30346
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19776
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum

19-49956555-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49956555
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 49956555
    reference: chr 19
allele count: 6
allele frequency: 4.056246619794484e-4
allele num: 14792
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161618
  ensembl transcript: ENST00000599652
  gene symbol: ALDH16A1
  hgvsc: ENST00000599652.1:n.73C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000293350
  ensembl transcript: ENST00000293350
  gene symbol: ALDH16A1
  hgvsc: ENST00000293350.4:c.-34C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469793
  ensembl transcript: ENST00000597415
  gene symbol: PIH1D1
  hgvsc: ENST00000597415.1:c.-183G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000471275
  ensembl transcript: ENST00000601825
  gene symbol: PIH1D1
  hgvsc: ENST00000601825.1:c.-18+78G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000470160
  ensembl transcript: ENST00000593417
  gene symbol: ALDH16A1
  hgvsc: ENST00000593417.1:c.-34C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000469087
  ensembl transcript: ENST00000599366
  gene symbol: PIH1D1
  hgvsc: ENST00000599366.1:c.-5+78G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000398675
  ensembl transcript: ENST00000433981
  gene symbol: ALDH16A1
  hgvsc: ENST00000433981.2:c.-299C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000410142
  ensembl transcript: ENST00000455361
  gene symbol: ALDH16A1
  hgvsc: ENST00000455361.2:c.-34C>T
  variant of: http://identifiers.org/hgnc/28114
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000104872
  ensembl protein: ENSP00000470445
  ensembl transcript: ENST00000596049
  gene symbol: PIH1D1
  hgvsc: ENST00000596049.1:c.-5+95G>A
  variant of: http://identifiers.org/hgnc/26075
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161618
  ensembl protein: ENSP00000445088
  ensembl transcript: ENST00000540132
  gene symbol: ALDH16A1
  hgvsc: ENST00000540132.1:c.-114C>T
  variant of: http://identifiers.org/hgnc/28114
canonical: true
consequence: 5' UTR
filter: PASS
num of homozygotes: 0
reference allele: C

GenotypeDepth
all individuals: 1
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5560
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 531
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1723
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3654
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 493
bin: 4.75e1
variant carriers: 3

GenotypeQuality
all individuals: 530
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 19
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 3
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6224
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15842
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2774
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 28
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3426
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 17311
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 7.15307582260372e-4
allele num: 1398
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12472
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1126
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2520
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 2.574002574002574e-3
allele num: 1554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 776
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.934e-1

QD
type: SiteQuality
SIO_000300: 1.199e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.61e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.54e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

MQ
type: SiteQuality
SIO_000300: 5.884e1

DP
type: SiteQuality
SIO_000300: 3.83431e5

GenotypeDepth
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5929
bin: 1.25e1
variant carriers: 3

GenotypeQuality
all individuals: 15772
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 25
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 9
bin: 9.25e1
variant carriers: 6

GenotypeQuality
all individuals: 43
bin: 7.25e1
variant carriers: 20

GenotypeQuality
all individuals: 30
bin: 7.75e1
variant carriers: 3

GenotypeQuality
all individuals: 11
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 17963
bin: 2.25e1
variant carriers: 4

GenotypeQuality
all individuals: 600
bin: 6.25e1
variant carriers: 3

GenotypeQuality
all individuals: 3655
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 99
bin: 6.75e1
variant carriers: 9

GenotypeQuality
all individuals: 5091
bin: 1.75e1
variant carriers: 11

GenotypeQuality
all individuals: 2896
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3420
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 517
bin: 4.25e1
variant carriers: 3

GenotypeQuality
all individuals: 121
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 491
bin: 4.75e1
variant carriers: 15

GenotypeQuality
all individuals: 9
bin: 8.75e1
variant carriers: 3

GenotypeQuality
all individuals: 81
bin: 9.75e1
variant carriers: 39

GenotypeQuality
all individuals: 1719
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 2.406545804588481e-4
allele num: 12466
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1138
num of homozygotes: 0

African
type: Population
allele count: 38
allele frequency: 2.386934673366834e-2
allele num: 1592
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 180
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 7.163323782234957e-4
allele num: 1396
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2522
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 786
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.89e-1

DP
type: SiteQuality
SIO_000300: 3.87751e5

MQRankSum
type: SiteQuality
SIO_000300: 4.67e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.03e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.98e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.54e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

QD
type: SiteQuality
SIO_000300: 1.036e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1733
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1135
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 485
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15323
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 410
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 10
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4526
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3623
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3224
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1754
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3862
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22319
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1540
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1292
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1764
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 7.388798581350672e-5
allele num: 13534
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2728
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.855e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.96e-1

QD
type: SiteQuality
SIO_000300: 6.04e0

DP
type: SiteQuality
SIO_000300: 4.11448e5

ClippingRankSum
type: SiteQuality
SIO_000300: 6.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.66e0

MQRankSum
type: SiteQuality
SIO_000300: 2.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.927e0

GenotypeDepth
all individuals: 3
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2608
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 447
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3630
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14565
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3838
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1686
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3632
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1557
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24599
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1589
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 368
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 9.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1612
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1364
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2780
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 196
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 984
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1824
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13982
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

QD
type: SiteQuality
SIO_000300: 3.46e1

MQRankSum
type: SiteQuality
SIO_000300: 1.52e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.22e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 4.29442e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.06e-2

VQSLOD
type: SiteQuality
SIO_000300: -3.55e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

GenotypeDepth
all individuals: 3
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3511
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 340
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11273
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 752
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3433
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30417
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1407
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 291
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1418
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 369
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1709
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4187
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1940
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1726
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3174
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 238
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 7.861635220125787e-4
allele num: 1272
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2140
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16616
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.833e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -3.21e0

DP
type: SiteQuality
SIO_000300: 4.97846e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.626e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.63e0

MQRankSum
type: SiteQuality
SIO_000300: -3.54e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.63e0

QD
type: SiteQuality
SIO_000300: 1.63e1

GenotypeDepth
all individuals: 3
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2468
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 326
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 352
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 411
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 365
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 484
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27175
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 781
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 849
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19819
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1329
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 651
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1393
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2792
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 442
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7390
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7790
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5254
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43636
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.638806948541462e-4
allele num: 6102
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4918
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 576
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.45e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.89e0

VQSLOD
type: SiteQuality
SIO_000300: -1.348e0

DP
type: SiteQuality
SIO_000300: 9.59815e5

MQ
type: SiteQuality
SIO_000300: 5.513e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.84e0

MQRankSum
type: SiteQuality
SIO_000300: 1.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.86e-1

GenotypeDepth
all individuals: 4
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 354
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17332
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 684
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 29803
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2058
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 428
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 763
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3161
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 333
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1130
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 995
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 381
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 366
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 219
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1233
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 589
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 624
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5836
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7964
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.146199081426793e-5
allele num: 46594
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5280
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.967e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.664e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.0109e6

VQSLOD
type: SiteQuality
SIO_000300: 4.32e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.0e-3

MQRankSum
type: SiteQuality
SIO_000300: -2.17e-1

QD
type: SiteQuality
SIO_000300: 1.116e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.2e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.330000000000001e-1

GenotypeDepth
all individuals: 12
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 299
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4021
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 259
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13279
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1077
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33761
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 354
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 827
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 960
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1429
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 886
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 558
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1280
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5850
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9250
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7366
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6774
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 668
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.875217981011432e-5
allele num: 51610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9750
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.12e0

DP
type: SiteQuality
SIO_000300: 1.101903e6

MQRankSum
type: SiteQuality
SIO_000300: 1.61e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.73e0

VQSLOD
type: SiteQuality
SIO_000300: -7.988e-1

MQ
type: SiteQuality
SIO_000300: 5.895e1

QD
type: SiteQuality
SIO_000300: 1.368e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.349e0

FS
type: SiteQuality
SIO_000300: 3.01e0

GenotypeDepth
all individuals: 6
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 214
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1427
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 724
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 850
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9159
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4730
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37103
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 512
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 453
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 719
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 449
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1135
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1712
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 308
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6252
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10752
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10676
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8342
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.769535673839185e-5
allele num: 56512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7618
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 738
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.11e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 9.06e-1

DP
type: SiteQuality
SIO_000300: 1.191227e6

MQRankSum
type: SiteQuality
SIO_000300: -4.21e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.87e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.97e0

QD
type: SiteQuality
SIO_000300: 1.312e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

GenotypeDepth
all individuals: 3
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 18
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37103
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1712
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1135
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 453
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 449
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9159
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 719
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 308
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 850
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4730
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 724
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1427
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 512
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 1.25e1
variant carriers: 0

Latino
type: Population
allele count: 3
allele frequency: 2.810041213937805e-4
allele num: 10676
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6252
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 3.720238095238095e-4
allele num: 10752
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8342
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 738
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7618
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.97e0

VQSLOD
type: SiteQuality
SIO_000300: 9.06e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.312e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.87e-1

DP
type: SiteQuality
SIO_000300: 1.191227e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.11e-1

GenotypeDepth
all individuals: 2
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 263
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37308
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 687
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 808
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4758
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 308
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 686
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8863
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 310
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 464
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 452
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 526
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1456
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1747
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1169
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.516050771773145e-5
allele num: 56882
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10884
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7700
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10718
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 742
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6286
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.57e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.23e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

DP
type: SiteQuality
SIO_000300: 1.197969e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.67e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.29e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.28e-1

QD
type: SiteQuality
SIO_000300: 1.408e1

GenotypeDepth
all individuals: 4
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6297
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 386
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1662
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 539
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5346
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 384
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 198
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 521
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2013
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1380
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 589
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39379
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 572
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 651
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 784
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12184
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8108
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11116
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.112842198976185e-4
allele num: 8986
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6438
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.666555562962469e-5
allele num: 60004
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.481e1

DP
type: SiteQuality
SIO_000300: 1.257584e6

VQSLOD
type: SiteQuality
SIO_000300: 1.59e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.28e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.13e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.1e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 7.41e-1

GenotypeDepth
all individuals: 1
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 428
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5506
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5397
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40083
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 339
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 496
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 593
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1446
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 525
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 690
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1719
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 402
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2078
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9224
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 798
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6472
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8228
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12676
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60990
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.911067545891998e-5
allele num: 11222
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.041e0

DP
type: SiteQuality
SIO_000300: 1.277133e6

MQRankSum
type: SiteQuality
SIO_000300: 3.43e-1

MQ
type: SiteQuality
SIO_000300: 5.729e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -5.01e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 9.98e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.59e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.03e0

GenotypeDepth
all individuals: 301
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5201
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1740
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 408
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 40257
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 409
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1460
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 498
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 706
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 318
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 468
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 610
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2102
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5525
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61188
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11254
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9262
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8256
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6482
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.807620237351655e-5
allele num: 12808
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.17e-1

QD
type: SiteQuality
SIO_000300: 9.77e0

DP
type: SiteQuality
SIO_000300: 1.281732e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.25e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.03e0

MQRankSum
type: SiteQuality
SIO_000300: 4.66e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.206e0

MQ
type: SiteQuality
SIO_000300: 5.096e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

GenotypeDepth
all individuals: 2
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 43415
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1523
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5703
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 358
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4584
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2205
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 443
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 454
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 636
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 408
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 739
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40834
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1815
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13244
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.203369434416366e-4
allele num: 8310
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6496
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11320
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61968
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.17e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.5e-1

QD
type: SiteQuality
SIO_000300: 1.441e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.443e0

MQRankSum
type: SiteQuality
SIO_000300: -6.04e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

VQSLOD
type: SiteQuality
SIO_000300: 7.58e-1

FS
type: SiteQuality
SIO_000300: 3.256e0

DP
type: SiteQuality
SIO_000300: 1.296639e6

GenotypeDepth
all individuals: 320
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7198
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1523
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1815
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40834
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 408
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4584
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 636
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5703
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 454
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 358
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2205
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 739
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 443
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11320
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8310
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.063377286261165e-4
allele num: 9404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13244
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6496
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61968
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -6.04e-1

FS
type: SiteQuality
SIO_000300: 3.256e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

QD
type: SiteQuality
SIO_000300: 1.441e1

DP
type: SiteQuality
SIO_000300: 1.296639e6

VQSLOD
type: SiteQuality
SIO_000300: 7.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.17e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.443e0

GenotypeDepth
all individuals: 413
bin: 3.75e1
variant carriers: 44

GenotypeDepth
all individuals: 37
bin: 5.25e1
variant carriers: 27

GenotypeQuality
all individuals: 421
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 767
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 40
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 291
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 367
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 41019
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 157
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 675
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 138
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 82
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 43
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5786
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 288
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1893
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1579
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3754
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2268
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 813
bin: 9.75e1
variant carriers: 343

African
type: Population
allele count: 337
allele frequency: 3.511879949979158e-2
allele num: 9596
num of homozygotes: 7

Other
type: Population
allele count: 2
allele frequency: 2.398081534772182e-3
allele num: 834
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62766
num of homozygotes: 0

Latino
type: Population
allele count: 16
allele frequency: 1.407954945441746e-3
allele num: 11364
num of homozygotes: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13834
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8358
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.339e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.79e-1

DP
type: SiteQuality
SIO_000300: 1.323754e6

MQRankSum
type: SiteQuality
SIO_000300: 3.56e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.54e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.39e-2

VQSLOD
type: SiteQuality
SIO_000300: 6.74e0

MQ
type: SiteQuality
SIO_000300: 5.966e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.6e-2

GenotypeDepth
all individuals: 5
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 287
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 809
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 373
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 665
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 5900
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 704
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2337
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 345
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1961
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1637
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3205
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41541
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11398
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9766
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8386
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63322
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.40666760444507e-4
allele num: 14218
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6546
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.01e-1

DP
type: SiteQuality
SIO_000300: 1.334494e6

VQSLOD
type: SiteQuality
SIO_000300: 8.44e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.6e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

FS
type: SiteQuality
SIO_000300: 3.055e0

MQRankSum
type: SiteQuality
SIO_000300: 1.0e0

QD
type: SiteQuality
SIO_000300: 1.369e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.703e0

GenotypeQuality
all individuals: 2366
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 317
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41685
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 810
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2953
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1669
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5945
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 815
bin: 9.75e1
variant carriers: 143

GenotypeQuality
all individuals: 713
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 348
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 109
allele frequency: 7.507921201267392e-3
allele num: 14518
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.768853034023149e-5
allele num: 11404
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9804
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8398
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 31
allele frequency: 4.875900468715594e-4
allele num: 63578
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.173708920187793e-3
allele num: 852
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.046e-1

FS
type: SiteQuality
SIO_000300: 2.478e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.43e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.983e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.07e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.166e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.44e-1

DP
type: SiteQuality
SIO_000300: 1.345604e6

QD
type: SiteQuality
SIO_000300: 1.91e0

GenotypeDepth
all individuals: 3601
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2549
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 686
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 186
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2061
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2415
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42074
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 731
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 828
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6034
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1720
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8418
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11412
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.564259792266299e-5
allele num: 63928
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9872
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14680
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.936e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 4.79e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.79e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.73e0

QD
type: SiteQuality
SIO_000300: 1.05e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.866e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.202e0

FS
type: SiteQuality
SIO_000300: 2.754e0

DP
type: SiteQuality
SIO_000300: 1.347242e6

GenotypeDepth
all individuals: 8041
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 692
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 6048
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42096
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 838
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2378
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2434
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1725
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2061
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 736
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11422
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.34698275862069e-4
allele num: 14848
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64052
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8420
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9902
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.17e-1

MQ
type: SiteQuality
SIO_000300: 5.969e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.14e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.1e-1

DP
type: SiteQuality
SIO_000300: 1.351349e6

BaseQRankSum
type: SiteQuality
SIO_000300: -5.476e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.232e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.388e1

GenotypeDepth
all individuals: 18
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2292
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 740
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2068
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 703
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 165
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 841
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6053
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1731
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2457
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 228
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42110
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.23558022073954e-5
allele num: 64148
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14942
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8426
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11422
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9916
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.1e0

DP
type: SiteQuality
SIO_000300: 1.354247e6

MQRankSum
type: SiteQuality
SIO_000300: -2.16e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.500000000000001e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

QD
type: SiteQuality
SIO_000300: 1.59e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.44e0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 883
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1822
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6289
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42750
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1513
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 753
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 786
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2598
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2161
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 1.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10064
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11458
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15672
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8456
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.698466465480077e-5
allele num: 64948
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.964e1

DP
type: SiteQuality
SIO_000300: 1.376316e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -5.044e0

FS
type: SiteQuality
SIO_000300: 1.157e0

QD
type: SiteQuality
SIO_000300: 1.219e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.84e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.43e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.35e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.02e-1

GenotypeDepth
all individuals: 9
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 786
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 14
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 901
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6356
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1264
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 809
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2194
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42823
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2665
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1866
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11472
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10102
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8460
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.523977788995457e-4
allele num: 15848
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.534071733194244e-5
allele num: 65186
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.9e-2

DP
type: SiteQuality
SIO_000300: 1.384231e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.7e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.6e-1

QD
type: SiteQuality
SIO_000300: 1.374e1

FS
type: SiteQuality
SIO_000300: 3.499e0

VQSLOD
type: SiteQuality
SIO_000300: 1.08e0

MQ
type: SiteQuality
SIO_000300: 5.972e1

GenotypeDepth
all individuals: 28
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1935
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2245
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 919
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 851
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 86
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 958
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6459
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 836
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43095
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2745
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16276
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10142
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8492
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11488
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.047665488236011e-5
allele num: 65624
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.002e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.16e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.18e0

VQSLOD
type: SiteQuality
SIO_000300: 1.72e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

DP
type: SiteQuality
SIO_000300: 1.399895e6

MQRankSum
type: SiteQuality
SIO_000300: 8.54e-1

QD
type: SiteQuality
SIO_000300: 1.142e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.53e-1

GenotypeDepth
all individuals: 27
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1975
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6500
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2792
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 931
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43108
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 811
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 848
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2278
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 864
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16384
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65784
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.83671060397403e-5
allele num: 10166
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.593e1

MQ
type: SiteQuality
SIO_000300: 5.93e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.15e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.52e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.43e-1

FS
type: SiteQuality
SIO_000300: 2.451e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

DP
type: SiteQuality
SIO_000300: 1.404775e6

MQRankSum
type: SiteQuality
SIO_000300: 4.11e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.18e-1

GenotypeDepth
all individuals: 582
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 881
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 582
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 43371
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 856
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2836
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2294
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 941
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6557
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2011
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10236
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66062
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.682062858135092e-5
allele num: 11518
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8534
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16460
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.394e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

QD
type: SiteQuality
SIO_000300: 9.94e0

VQSLOD
type: SiteQuality
SIO_000300: -4.782e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.78e0

MQRankSum
type: SiteQuality
SIO_000300: 1.65e0

DP
type: SiteQuality
SIO_000300: 1.411044e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.047e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.98e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 23
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 860
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 890
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 947
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 478
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2299
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2846
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2017
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6586
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43508
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06501698204755e-5
allele num: 16488
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66202
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10260
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.03e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.900000000000001e-3

MQRankSum
type: SiteQuality
SIO_000300: -6.18e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.6e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.45e0

DP
type: SiteQuality
SIO_000300: 1.413704e6

MQ
type: SiteQuality
SIO_000300: 5.951e1

QD
type: SiteQuality
SIO_000300: 9.27e0

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeDepth
all individuals: 102
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6593
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2019
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 861
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2850
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 947
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 460
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43495
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 894
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 2301
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10264
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.040106305870983e-5
allele num: 66224
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.02e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.75e-1

MQ
type: SiteQuality
SIO_000300: 5.941e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

FS
type: SiteQuality
SIO_000300: 3.878e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.726e0

QD
type: SiteQuality
SIO_000300: 1.024e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.16e-1

DP
type: SiteQuality
SIO_000300: 1.4144e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e0

GenotypeDepth
all individuals: 45380
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 427
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2302
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6596
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2023
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2851
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 864
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 895
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 948
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43503
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.737098344693281e-5
allele num: 10270
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66256
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.179e1

MQRankSum
type: SiteQuality
SIO_000300: -1.035e0

VQSLOD
type: SiteQuality
SIO_000300: 1.38e0

FS
type: SiteQuality
SIO_000300: 8.978999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

DP
type: SiteQuality
SIO_000300: 1.415146e6

MQ
type: SiteQuality
SIO_000300: 5.953e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.88e-1

GenotypeDepth
all individuals: 23
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 403
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2310
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 899
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6606
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2027
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 865
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43527
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 952
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2852
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508432135638218e-5
allele num: 66294
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10282
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.069e0

FS
type: SiteQuality
SIO_000300: 1.581e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.1e-2

DP
type: SiteQuality
SIO_000300: 1.415949e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.6e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.87e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.983e0

MQ
type: SiteQuality
SIO_000300: 5.947e1

QD
type: SiteQuality
SIO_000300: 1.135e1

GenotypeDepth
all individuals: 14
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 46
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 12
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43546
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6602
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 952
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2026
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 382
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2856
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 865
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 902
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2315
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.714396735962697e-5
allele num: 10294
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66318
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.100000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.779e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.44e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.05e0

QD
type: SiteQuality
SIO_000300: 6.93e0

DP
type: SiteQuality
SIO_000300: 1.416423e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

FS
type: SiteQuality
SIO_000300: 1.1939e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.189e0

GenotypeDepth
all individuals: 253
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 25
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 14
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 12
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 957
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2323
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43594
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 904
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 868
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6618
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2869
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2033
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505842669557885e-5
allele num: 66408
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10328
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.93e0

DP
type: SiteQuality
SIO_000300: 1.418492e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.19e-1

FS
type: SiteQuality
SIO_000300: 2.402e0

QD
type: SiteQuality
SIO_000300: 1.055e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.1e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -6.56e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.77e-1

GenotypeDepth
all individuals: 25
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 14
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2039
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 868
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6656
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 906
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2876
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43619
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 960
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2330
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66520
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.059871530723549e-5
allele num: 16502
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.983e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.21e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.5e-1

FS
type: SiteQuality
SIO_000300: 2.655e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.28e-1

QD
type: SiteQuality
SIO_000300: 1.128e1

MQRankSum
type: SiteQuality
SIO_000300: 1.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.21e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.5e0

DP
type: SiteQuality
SIO_000300: 1.420725e6

GenotypeDepth
all individuals: 102
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 25
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43655
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2878
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6655
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 868
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 960
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 908
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2041
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2327
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.654373431164318e-5
allele num: 10358
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503081316699233e-5
allele num: 66530
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.21e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.8e0

DP
type: SiteQuality
SIO_000300: 1.420918e6

MQ
type: SiteQuality
SIO_000300: 5.965e1

QD
type: SiteQuality
SIO_000300: 1.043e1

MQRankSum
type: SiteQuality
SIO_000300: 3.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.4e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.09e-2

FS
type: SiteQuality
SIO_000300: 1.734e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.0e-2

GenotypeDepth
all individuals: 606
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 14
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2880
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6656
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2042
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 920
bin: 9.75e1
variant carriers: 13

GenotypeQuality
all individuals: 30
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 867
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2328
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 960
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43648
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10358
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66536
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 13
allele frequency: 1.505675237433403e-3
allele num: 8634
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.95e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.4e-3

QD
type: SiteQuality
SIO_000300: 1.044e1

MQ
type: SiteQuality
SIO_000300: 5.958e1

VQSLOD
type: SiteQuality
SIO_000300: 4.25e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.8e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.97e-1

DP
type: SiteQuality
SIO_000300: 1.422229e6

GenotypeDepth
all individuals: 26
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 15
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 917
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 867
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6651
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43614
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2042
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 959
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2332
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2882
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.059871530723549e-5
allele num: 16502
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10358
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66546
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.045e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.37e-1

MQ
type: SiteQuality
SIO_000300: 5.854e1

MQRankSum
type: SiteQuality
SIO_000300: -1.7e-2

VQSLOD
type: SiteQuality
SIO_000300: -5.847e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.12e-1

DP
type: SiteQuality
SIO_000300: 1.421561e6

FS
type: SiteQuality
SIO_000300: 3.0301e1

GenotypeDepth
all individuals: 30
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 15
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6648
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43624
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2880
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 920
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 19
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2331
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 960
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 868
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2042
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.005349522149426e-5
allele num: 66548
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.742e0

DP
type: SiteQuality
SIO_000300: 1.422044e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.73e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.84e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.4e-2

FS
type: SiteQuality
SIO_000300: 2.397e0

VQSLOD
type: SiteQuality
SIO_000300: 5.31e-1

MQ
type: SiteQuality
SIO_000300: 5.917e1

QD
type: SiteQuality
SIO_000300: 1.05e1

GenotypeDepth
all individuals: 28
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 15
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2045
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 923
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2333
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 960
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43587
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6643
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 868
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2879
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10358
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50253929140247e-5
allele num: 66554
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.231e0

MQRankSum
type: SiteQuality
SIO_000300: 1.25e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.8e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.225e0

FS
type: SiteQuality
SIO_000300: 6.696e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.421976e6

MQ
type: SiteQuality
SIO_000300: 5.799e1

QD
type: SiteQuality
SIO_000300: 1.593e1

GenotypeQuality
all individuals: 99
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 871
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2886
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 43289
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 946
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2050
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 963
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6620
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2342
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10364
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502403846153846e-5
allele num: 66560
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.844e1

VQSLOD
type: SiteQuality
SIO_000300: -1.158e0

MQ
type: SiteQuality
SIO_000300: 5.741e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.59e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.24e0

MQRankSum
type: SiteQuality
SIO_000300: -3.47e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.19e-1

DP
type: SiteQuality
SIO_000300: 1.423088e6

FS
type: SiteQuality
SIO_000300: 3.057e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.6e-3

GenotypeQuality
all individuals: 90
bin: 4.75e1
variant carriers: 90

GenotypeQuality
all individuals: 30
bin: 2.75e1
variant carriers: 27

GenotypeQuality
all individuals: 251
bin: 8.25e1
variant carriers: 165

GenotypeQuality
all individuals: 54
bin: 4.25e1
variant carriers: 49

GenotypeQuality
all individuals: 38
bin: 1.75e1
variant carriers: 37

GenotypeQuality
all individuals: 114
bin: 5.25e1
variant carriers: 108

GenotypeQuality
all individuals: 68
bin: 3.75e1
variant carriers: 62

GenotypeQuality
all individuals: 290
bin: 7.25e1
variant carriers: 118

GenotypeQuality
all individuals: 25
bin: 1.25e1
variant carriers: 22

GenotypeQuality
all individuals: 90
bin: 5.75e1
variant carriers: 85

GenotypeQuality
all individuals: 35
bin: 7.5e0
variant carriers: 33

GenotypeQuality
all individuals: 78
bin: 3.25e1
variant carriers: 71

GenotypeQuality
all individuals: 328
bin: 7.75e1
variant carriers: 159

GenotypeQuality
all individuals: 5658
bin: 6.25e1
variant carriers: 90

GenotypeQuality
all individuals: 42
bin: 2.5e0
variant carriers: 31

GenotypeQuality
all individuals: 142
bin: 8.75e1
variant carriers: 117

GenotypeQuality
all individuals: 233
bin: 9.25e1
variant carriers: 204

GenotypeQuality
all individuals: 52343
bin: 9.75e1
variant carriers: 52304

GenotypeQuality
all individuals: 736
bin: 6.75e1
variant carriers: 133

GenotypeQuality
all individuals: 58
bin: 2.25e1
variant carriers: 41

South Asian
type: Population
allele count: 10505
allele frequency: 6.368210475266731e-1
allele num: 16496
num of homozygotes: 3404

European (Non-Finnish)
type: Population
allele count: 50962
allele frequency: 7.657700976709241e-1
allele num: 66550
num of homozygotes: 19503

Other
type: Population
allele count: 667
allele frequency: 7.411111111111112e-1
allele num: 900
num of homozygotes: 247

Latino
type: Population
allele count: 6591
allele frequency: 5.72234762979684e-1
allele num: 11518
num of homozygotes: 1880

African
type: Population
allele count: 6548
allele frequency: 6.311933680354733e-1
allele num: 10374
num of homozygotes: 2093

East Asian
type: Population
allele count: 3342
allele frequency: 3.869847151459009e-1
allele num: 8636
num of homozygotes: 624

European (Finnish)
type: Population
allele count: 4458
allele frequency: 6.76890373519587e-1
allele num: 6586
num of homozygotes: 1525

MQ
type: SiteQuality
SIO_000300: 5.942e1

VQSLOD
type: SiteQuality
SIO_000300: 1.75e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.24e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.897e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.97e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.6e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.09e-1

DP
type: SiteQuality
SIO_000300: 4.939809e6

QD
type: SiteQuality
SIO_000300: 3.021e1

FS
type: SiteQuality
SIO_000300: 3.081e0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 907
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 547
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5892
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 326
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 517
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50654
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 89
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 339
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 633
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.592912705272256e-4
allele num: 11570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66680
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.29e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.269e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.288e0

QD
type: SiteQuality
SIO_000300: 2.653e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.500000000000001e-3

FS
type: SiteQuality
SIO_000300: 1.1038e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.77e-1

DP
type: SiteQuality
SIO_000300: 4.778696e6

MQ
type: SiteQuality
SIO_000300: 5.874e1

GenotypeQuality
all individuals: 206
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50651
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 908
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 326
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 518
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5902
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 339
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 633
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 550
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 5.775895263765884e-4
allele num: 10388
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66678
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.778749e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.3e-3

FS
type: SiteQuality
SIO_000300: 6.850000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.76e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.16e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.26e0

QD
type: SiteQuality
SIO_000300: 1.548e1

VQSLOD
type: SiteQuality
SIO_000300: 1.45e0

MQ
type: SiteQuality
SIO_000300: 5.928e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.340000000000001e-1

GenotypeQuality
all individuals: 62
bin: 3.75e1
variant carriers: 59

GenotypeQuality
all individuals: 54
bin: 4.25e1
variant carriers: 50

GenotypeQuality
all individuals: 30
bin: 1.25e1
variant carriers: 26

GenotypeQuality
all individuals: 34
bin: 2.75e1
variant carriers: 28

GenotypeQuality
all individuals: 80
bin: 5.75e1
variant carriers: 76

GenotypeQuality
all individuals: 121
bin: 5.25e1
variant carriers: 116

GenotypeQuality
all individuals: 64
bin: 2.25e1
variant carriers: 41

GenotypeQuality
all individuals: 252
bin: 8.25e1
variant carriers: 166

GenotypeQuality
all individuals: 75
bin: 3.25e1
variant carriers: 68

GenotypeQuality
all individuals: 286
bin: 7.25e1
variant carriers: 115

GenotypeQuality
all individuals: 40
bin: 1.75e1
variant carriers: 38

GenotypeQuality
all individuals: 52356
bin: 9.75e1
variant carriers: 52317

GenotypeQuality
all individuals: 42
bin: 2.5e0
variant carriers: 31

GenotypeQuality
all individuals: 148
bin: 8.75e1
variant carriers: 123

GenotypeQuality
all individuals: 31
bin: 7.5e0
variant carriers: 30

GenotypeQuality
all individuals: 92
bin: 4.75e1
variant carriers: 84

GenotypeQuality
all individuals: 741
bin: 6.75e1
variant carriers: 140

GenotypeQuality
all individuals: 328
bin: 7.75e1
variant carriers: 158

GenotypeQuality
all individuals: 226
bin: 9.25e1
variant carriers: 197

GenotypeQuality
all individuals: 5641
bin: 6.25e1
variant carriers: 83

European (Finnish)
type: Population
allele count: 4458
allele frequency: 6.76890373519587e-1
allele num: 6586
num of homozygotes: 1525

East Asian
type: Population
allele count: 3335
allele frequency: 3.867115027829314e-1
allele num: 8624
num of homozygotes: 621

African
type: Population
allele count: 6550
allele frequency: 6.313861577019472e-1
allele num: 10374
num of homozygotes: 2094

South Asian
type: Population
allele count: 10503
allele frequency: 6.36699806013579e-1
allele num: 16496
num of homozygotes: 3403

Other
type: Population
allele count: 667
allele frequency: 7.411111111111112e-1
allele num: 900
num of homozygotes: 247

Latino
type: Population
allele count: 6594
allele frequency: 5.723958333333333e-1
allele num: 11520
num of homozygotes: 1881

European (Non-Finnish)
type: Population
allele count: 50958
allele frequency: 7.657790334214956e-1
allele num: 66544
num of homozygotes: 19502

BaseQRankSum
type: SiteQuality
SIO_000300: 2.69e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.24e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.44e-1

QD
type: SiteQuality
SIO_000300: 3.166e1

VQSLOD
type: SiteQuality
SIO_000300: 1.48e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.55e-1

FS
type: SiteQuality
SIO_000300: 3.223e0

MQ
type: SiteQuality
SIO_000300: 5.942e1

MQRankSum
type: SiteQuality
SIO_000300: 1.02e-1

DP
type: SiteQuality
SIO_000300: 4.716269e6

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37690
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 516
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1103
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3113
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9203
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 814
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1900
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2642
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3198
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10318
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.063545961678389e-5
allele num: 16492
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66324
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.964e1

MQRankSum
type: SiteQuality
SIO_000300: 2.68e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.269e0

VQSLOD
type: SiteQuality
SIO_000300: 9.84e-1

DP
type: SiteQuality
SIO_000300: 1.781422e6

QD
type: SiteQuality
SIO_000300: 1.06e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.45e-1

FS
type: SiteQuality
SIO_000300: 1.834e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.07e0

GenotypeQuality
all individuals: 48
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3103
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3183
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 672
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9155
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1886
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37518
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 811
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1099
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2624
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10286
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510528382828313e-5
allele num: 66202
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.073e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -2.95e-1

MQ
type: SiteQuality
SIO_000300: 5.941e1

MQRankSum
type: SiteQuality
SIO_000300: -2.2e-2

FS
type: SiteQuality
SIO_000300: 3.232e0

VQSLOD
type: SiteQuality
SIO_000300: -9.545e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.21e-1

DP
type: SiteQuality
SIO_000300: 1.776712e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.36e0

GenotypeQuality
all individuals: 150
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2573
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1087
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1195
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3108
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1839
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3069
bin: 9.75e1
variant carriers: 42

GenotypeQuality
all individuals: 796
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8985
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37004
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.736412571627018e-4
allele num: 11518
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 25
allele frequency: 3.796968500349321e-4
allele num: 65842
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.761811792268645e-5
allele num: 10244
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 11
allele frequency: 6.685304485231554e-4
allele num: 16454
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3
allele frequency: 4.560656734569778e-4
allele num: 6578
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.18e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.02e-1

QD
type: SiteQuality
SIO_000300: 1.304e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.89e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.297e0

DP
type: SiteQuality
SIO_000300: 1.759463e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

MQ
type: SiteQuality
SIO_000300: 5.884e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.47e-1

GenotypeQuality
all individuals: 787
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1401
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36849
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1080
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8940
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3062
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1824
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3013
bin: 9.75e1
variant carriers: 2

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16440
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10228
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.164686699277894e-4
allele num: 8586
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5220700152207e-5
allele num: 65700
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.493e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

FS
type: SiteQuality
SIO_000300: 1.139e0

MQ
type: SiteQuality
SIO_000300: 5.956e1

QD
type: SiteQuality
SIO_000300: 2.046e1

MQRankSum
type: SiteQuality
SIO_000300: -2.85e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.078e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.5e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.07e-1

DP
type: SiteQuality
SIO_000300: 1.751687e6

GenotypeQuality
all individuals: 185
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 766
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 872
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2922
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 995
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8374
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1760
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2378
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33370
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 582
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2982
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 161
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3683
bin: 2.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16330
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8484
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.756567425569177e-5
allele num: 11420
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10122
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64702
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

QD
type: SiteQuality
SIO_000300: 1.006e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.81e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.967e1

MQRankSum
type: SiteQuality
SIO_000300: 7.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.77e0

VQSLOD
type: SiteQuality
SIO_000300: 3.97e-1

DP
type: SiteQuality
SIO_000300: 1.679451e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.41e-1

GenotypeQuality
all individuals: 1971
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1044
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 358
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 349
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29892
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 754
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2976
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5085
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2802
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 340
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7652
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1548
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1178
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2241
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16272
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10080
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8420
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11332
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.558895055184885e-5
allele num: 64148
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -7.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 5.99e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.02e-1

MQ
type: SiteQuality
SIO_000300: 5.955e1

FS
type: SiteQuality
SIO_000300: 8.380000000000001e0

VQSLOD
type: SiteQuality
SIO_000300: 6.820000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.61219e6

QD
type: SiteQuality
SIO_000300: 1.594e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.73e0

GenotypeQuality
all individuals: 358
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29892
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2976
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1971
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5085
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 754
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1548
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1044
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1728
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 349
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7652
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2802
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2241
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1178
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.558895055184885e-5
allele num: 64148
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16272
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10080
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8420
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11332
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.955e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.02e-1

FS
type: SiteQuality
SIO_000300: 8.380000000000001e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.0e-3

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

DP
type: SiteQuality
SIO_000300: 1.61219e6

MQRankSum
type: SiteQuality
SIO_000300: 5.99e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.820000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.73e0

QD
type: SiteQuality
SIO_000300: 1.594e1

GenotypeQuality
all individuals: 1971
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2241
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 340
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1728
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 358
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5085
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7652
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1548
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1178
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2802
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 754
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2976
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 349
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29892
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11332
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8420
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.558895055184885e-5
allele num: 64148
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10080
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16272
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.99e-1

DP
type: SiteQuality
SIO_000300: 1.61219e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.0e-3

FS
type: SiteQuality
SIO_000300: 8.380000000000001e0

QD
type: SiteQuality
SIO_000300: 1.594e1

VQSLOD
type: SiteQuality
SIO_000300: 6.820000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.02e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

MQ
type: SiteQuality
SIO_000300: 5.955e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.73e0

GenotypeQuality
all individuals: 285
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1271
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 372
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2111
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 396
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2216
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 366
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5229
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1040
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1722
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1639
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7584
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2784
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29432
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 749
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11326
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10064
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.560549313358302e-5
allele num: 64080
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8410
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16264
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6508
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.474e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

DP
type: SiteQuality
SIO_000300: 1.602983e6

VQSLOD
type: SiteQuality
SIO_000300: 8.42e-1

QD
type: SiteQuality
SIO_000300: 5.55e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.04e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.39e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.717e0

GenotypeQuality
all individuals: 6780
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5852
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26456
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1018
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 542
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 386
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 545
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2118
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2957
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 681
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2972
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1034
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2687
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2052
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 743
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1700
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8368
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63780
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10016
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11280
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.153088850603002e-5
allele num: 16252
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6490
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.448e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.557671e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.092e0

VQSLOD
type: SiteQuality
SIO_000300: -1.908e0

MQ
type: SiteQuality
SIO_000300: 5.767e1

QD
type: SiteQuality
SIO_000300: 1.38e1

MQRankSum
type: SiteQuality
SIO_000300: -6.67e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.69e-1

GenotypeQuality
all individuals: 738
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 419
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 538
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2947
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 511
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2137
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6650
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 412
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1670
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2965
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1031
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 259
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5930
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6490
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11266
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63710
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10000
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8340
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.160670280926565e-5
allele num: 16232
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.89e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.931e0

QD
type: SiteQuality
SIO_000300: 1.19e1

VQSLOD
type: SiteQuality
SIO_000300: -3.342e-1

MQ
type: SiteQuality
SIO_000300: 5.928e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.006e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.69e0

DP
type: SiteQuality
SIO_000300: 1.552731e6

GenotypeQuality
all individuals: 606
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2615
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1030
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3253
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1665
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6529
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1961
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2120
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 634
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2965
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 315
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2275
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 734
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 450
bin: 7.5e0
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8332
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9992
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16230
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.57217872527749e-5
allele num: 63606
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6492
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11256
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.536616e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.47e0

QD
type: SiteQuality
SIO_000300: 1.976e1

VQSLOD
type: SiteQuality
SIO_000300: -3.546e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.06e-1

GenotypeQuality
all individuals: 1020
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1070
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4385
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3369
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5824
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 570
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 552
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 23033
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2962
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1096
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1860
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2541
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 401
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.161855376735068e-5
allele num: 63254
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9960
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8296
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6462
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11238
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16194
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.1e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.68e-1

MQ
type: SiteQuality
SIO_000300: 5.939e1

QD
type: SiteQuality
SIO_000300: 1.472e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.21e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.17e-1

DP
type: SiteQuality
SIO_000300: 1.483684e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.045e0

GenotypeQuality
all individuals: 72
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1011
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4997
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 433
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1623
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6308
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 686
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3045
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 374
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 741
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2288
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 989
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2952
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5373
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17677
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5130
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16126
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62482
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6438
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9878
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.223091976516634e-4
allele num: 8176
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11134
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.415e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.32e0

DP
type: SiteQuality
SIO_000300: 1.418984e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.34e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.268e0

QD
type: SiteQuality
SIO_000300: 1.768e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.1e0

GenotypeQuality
all individuals: 951
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 425
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 445
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5217
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6291
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1705
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2596
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1006
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2275
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 717
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2376
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5010
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2958
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 5436
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9846
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.603603603603604e-4
allele num: 11100
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8128
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6450
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.817419789960497e-5
allele num: 62274
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16090
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.830000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.47e-1

FS
type: SiteQuality
SIO_000300: 1.55e0

VQSLOD
type: SiteQuality
SIO_000300: 8.71e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 9.720000000000001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

DP
type: SiteQuality
SIO_000300: 1.409459e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.317e0

GenotypeQuality
all individuals: 1610
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17414
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3066
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5436
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5010
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 782
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 425
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2958
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2596
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 445
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1705
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 717
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1006
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2376
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9846
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8128
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62274
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11100
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.215040397762585e-5
allele num: 16090
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6450
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.47e-1

QD
type: SiteQuality
SIO_000300: 9.720000000000001e0

MQRankSum
type: SiteQuality
SIO_000300: 2.06e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.71e-1

FS
type: SiteQuality
SIO_000300: 1.55e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.409459e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.317e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.830000000000001e-1

GenotypeQuality
all individuals: 3631
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 5696
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1592
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 635
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3175
bin: 9.75e1
variant carriers: 239

GenotypeQuality
all individuals: 690
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5267
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2279
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3068
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 996
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 5956
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3168
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5417
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1225
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3917
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61146
num of homozygotes: 0

South Asian
type: Population
allele count: 240
allele frequency: 1.506591337099812e-2
allele num: 15930
num of homozygotes: 3

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7990
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9702
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.827819411442149e-4
allele num: 10942
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.336448598130841e-3
allele num: 856
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6366
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.576e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.806e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.34e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.13e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.67e-1

DP
type: SiteQuality
SIO_000300: 1.377289e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.27e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 635
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2279
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3917
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3631
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 690
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3168
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1592
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5956
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1225
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5417
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5267
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 864
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3175
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 715
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1582
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 996
bin: 9.25e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9702
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6366
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10942
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.270859909070094e-5
allele num: 61146
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7990
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15930
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.34e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.13e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.806e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.377289e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.67e-1

QD
type: SiteQuality
SIO_000300: 1.576e1

GenotypeQuality
all individuals: 10569
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 560
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3349
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1492
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24335
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 364
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1201
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 993
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 100
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 352
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5580
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1542
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6034
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 144
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.25e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.54e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.06e-1

DP
type: SiteQuality
SIO_000300: 3.29789e5

VQSLOD
type: SiteQuality
SIO_000300: -3.771e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.67e-1

QD
type: SiteQuality
SIO_000300: 1.44e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.0e-1

GenotypeQuality
all individuals: 1475
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 530
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5039
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10866
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24433
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1204
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 355
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6698
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1188
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 212
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1538
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 100
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5540
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5944
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 638
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 352
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 142
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.27e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.73e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

QD
type: SiteQuality
SIO_000300: 1.4e1

MQRankSum
type: SiteQuality
SIO_000300: -1.203e0

DP
type: SiteQuality
SIO_000300: 3.31988e5

VQSLOD
type: SiteQuality
SIO_000300: -1.5e0

GenotypeQuality
all individuals: 165
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 19
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1479
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11762
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24788
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1192
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2911
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6477
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 352
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1354
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 971
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6052
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5594
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 96
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 356
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 148
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1552
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.22e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.22e-1

QD
type: SiteQuality
SIO_000300: 1.257e1

VQSLOD
type: SiteQuality
SIO_000300: -1.195e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.3484e5

MQRankSum
type: SiteQuality
SIO_000300: -9.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.495e0

GenotypeQuality
all individuals: 97
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 474
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4314
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1463
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1416
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2903
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 24788
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1178
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 360
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1540
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 636
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 148
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6042
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5588
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 96
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.189e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.51e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -7.817e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.21e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -7.51e-1

DP
type: SiteQuality
SIO_000300: 3.36862e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.51e-1

MQ
type: SiteQuality
SIO_000300: 5.739e1

GenotypeQuality
all individuals: 28
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1188
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2252
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 382
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1415
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5496
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 904
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25056
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 318
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14364
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3476
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1680
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 362
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6112
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 662
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5682
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1540
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 104
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 150
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.05e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.65e0

VQSLOD
type: SiteQuality
SIO_000300: -2.244e0

DP
type: SiteQuality
SIO_000300: 3.48993e5

BaseQRankSum
type: SiteQuality
SIO_000300: 2.22e0

QD
type: SiteQuality
SIO_000300: 7.32e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.652e0

MQRankSum
type: SiteQuality
SIO_000300: 1.31e0