19-15079191-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15079191
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 15079191
    reference: chr 19
allele count: 1
allele frequency: 8.706705904887945e-6
allele num: 114854
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471038
  ensembl transcript: ENST00000600144
  gene symbol: SLC1A6
  hgvsc: ENST00000600144.1:c.472G>A
  hgvsp: ENSP00000471038.1:p.Gly158Ser
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471562
  ensembl transcript: ENST00000597262
  gene symbol: SLC1A6
  hgvsc: ENST00000597262.1:c.472G>A
  hgvsp: ENSP00000471562.1:p.Gly158Ser
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471781
  ensembl transcript: ENST00000598504
  gene symbol: SLC1A6
  hgvsc: ENST00000598504.1:c.472G>A
  hgvsp: ENSP00000471781.1:p.Gly158Ser
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000221742
  ensembl transcript: ENST00000221742
  gene symbol: SLC1A6
  hgvsc: ENST00000221742.3:c.472G>A
  hgvsp: ENSP00000221742.3:p.Gly158Ser
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000446175
  ensembl transcript: ENST00000544886
  gene symbol: SLC1A6
  hgvsc: ENST00000544886.2:c.472G>A
  hgvsp: ENSP00000446175.1:p.Gly158Ser
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000409386
  ensembl transcript: ENST00000430939
  gene symbol: SLC1A6
  hgvsc: ENST00000430939.2:c.356+3358G>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105143
  ensembl transcript: ENST00000596697
  gene symbol: SLC1A6
  hgvsc: ENST00000596697.1:n.2835G>A
  variant of: http://identifiers.org/hgnc/10944
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2821
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3164
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2317
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12988
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34316
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3401
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1248
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4514
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41220
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1135
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1152
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 947
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gly158Ser
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum

19-15079194-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15079194
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 15079194
    reference: chr 19
allele count: 1
allele frequency: 8.695803405276614e-6
allele num: 114998
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000221742
  ensembl transcript: ENST00000221742
  gene symbol: SLC1A6
  hgvsc: ENST00000221742.3:c.469A>C
  hgvsp: ENSP00000221742.3:p.Lys157Gln
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000409386
  ensembl transcript: ENST00000430939
  gene symbol: SLC1A6
  hgvsc: ENST00000430939.2:c.356+3355A>C
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471781
  ensembl transcript: ENST00000598504
  gene symbol: SLC1A6
  hgvsc: ENST00000598504.1:c.469A>C
  hgvsp: ENSP00000471781.1:p.Lys157Gln
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105143
  ensembl transcript: ENST00000596697
  gene symbol: SLC1A6
  hgvsc: ENST00000596697.1:n.2832A>C
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000446175
  ensembl transcript: ENST00000544886
  gene symbol: SLC1A6
  hgvsc: ENST00000544886.2:c.469A>C
  hgvsp: ENSP00000446175.1:p.Lys157Gln
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471038
  ensembl transcript: ENST00000600144
  gene symbol: SLC1A6
  hgvsc: ENST00000600144.1:c.469A>C
  hgvsp: ENSP00000471038.1:p.Lys157Gln
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471562
  ensembl transcript: ENST00000597262
  gene symbol: SLC1A6
  hgvsc: ENST00000597262.1:c.469A>C
  hgvsp: ENSP00000471562.1:p.Lys157Gln
  variant of: http://identifiers.org/hgnc/10944
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34274
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2299
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13092
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3408
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3101
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2829
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 582
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1082
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1233
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1127
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 800
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Lys157Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: East Asian
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: DP

19-15079198-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15079198
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 15079198
    reference: chr 19
allele count: 2
allele frequency: 1.738918740327264e-5
allele num: 115014
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471562
  ensembl transcript: ENST00000597262
  gene symbol: SLC1A6
  hgvsc: ENST00000597262.1:c.465C>T
  hgvsp: ENST00000597262.1:c.465C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471038
  ensembl transcript: ENST00000600144
  gene symbol: SLC1A6
  hgvsc: ENST00000600144.1:c.465C>T
  hgvsp: ENST00000600144.1:c.465C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000409386
  ensembl transcript: ENST00000430939
  gene symbol: SLC1A6
  hgvsc: ENST00000430939.2:c.356+3351C>T
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105143
  ensembl transcript: ENST00000596697
  gene symbol: SLC1A6
  hgvsc: ENST00000596697.1:n.2828C>T
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000221742
  ensembl transcript: ENST00000221742
  gene symbol: SLC1A6
  hgvsc: ENST00000221742.3:c.465C>T
  hgvsp: ENST00000221742.3:c.465C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000446175
  ensembl transcript: ENST00000544886
  gene symbol: SLC1A6
  hgvsc: ENST00000544886.2:c.465C>T
  hgvsp: ENST00000544886.2:c.465C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471781
  ensembl transcript: ENST00000598504
  gene symbol: SLC1A6
  hgvsc: ENST00000598504.1:c.465C>T
  hgvsp: ENST00000598504.1:c.465C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10944
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2767
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34253
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3240
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13337
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2393
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3001
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1068
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1126
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 651
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1017
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Pro155Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: Latino
reference allele: G
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD

19-15079219-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15079219
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 15079219
    reference: chr 19
allele count: 1
allele frequency: 8.656509695290859e-6
allele num: 115520
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105143
  ensembl transcript: ENST00000596697
  gene symbol: SLC1A6
  hgvsc: ENST00000596697.1:n.2807C>G
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471562
  ensembl transcript: ENST00000597262
  gene symbol: SLC1A6
  hgvsc: ENST00000597262.1:c.444C>G
  hgvsp: ENST00000597262.1:c.444C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000221742
  ensembl transcript: ENST00000221742
  gene symbol: SLC1A6
  hgvsc: ENST00000221742.3:c.444C>G
  hgvsp: ENST00000221742.3:c.444C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000446175
  ensembl transcript: ENST00000544886
  gene symbol: SLC1A6
  hgvsc: ENST00000544886.2:c.444C>G
  hgvsp: ENST00000544886.2:c.444C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000409386
  ensembl transcript: ENST00000430939
  gene symbol: SLC1A6
  hgvsc: ENST00000430939.2:c.356+3330C>G
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471038
  ensembl transcript: ENST00000600144
  gene symbol: SLC1A6
  hgvsc: ENST00000600144.1:c.444C>G
  hgvsp: ENST00000600144.1:c.444C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471781
  ensembl transcript: ENST00000598504
  gene symbol: SLC1A6
  hgvsc: ENST00000598504.1:c.444C>G
  hgvsp: ENST00000598504.1:c.444C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10944
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2848
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14005
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2851
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2400
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34178
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2709
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4406
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4021
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1083
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 496
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1038
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Leu148Leu
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD

19-15079224-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15079224
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 15079224
    reference: chr 19
allele count: 1
allele frequency: 8.658458448057908e-6
allele num: 115494
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000446175
  ensembl transcript: ENST00000544886
  gene symbol: SLC1A6
  hgvsc: ENST00000544886.2:c.439A>T
  hgvsp: ENSP00000446175.1:p.Ile147Phe
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000409386
  ensembl transcript: ENST00000430939
  gene symbol: SLC1A6
  hgvsc: ENST00000430939.2:c.356+3325A>T
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471038
  ensembl transcript: ENST00000600144
  gene symbol: SLC1A6
  hgvsc: ENST00000600144.1:c.439A>T
  hgvsp: ENSP00000471038.1:p.Ile147Phe
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471781
  ensembl transcript: ENST00000598504
  gene symbol: SLC1A6
  hgvsc: ENST00000598504.1:c.439A>T
  hgvsp: ENSP00000471781.1:p.Ile147Phe
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000221742
  ensembl transcript: ENST00000221742
  gene symbol: SLC1A6
  hgvsc: ENST00000221742.3:c.439A>T
  hgvsp: ENSP00000221742.3:p.Ile147Phe
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105143
  ensembl transcript: ENST00000596697
  gene symbol: SLC1A6
  hgvsc: ENST00000596697.1:n.2802A>T
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471562
  ensembl transcript: ENST00000597262
  gene symbol: SLC1A6
  hgvsc: ENST00000597262.1:c.439A>T
  hgvsp: ENSP00000471562.1:p.Ile147Phe
  variant of: http://identifiers.org/hgnc/10944
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2945
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2889
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2363
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33626
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2861
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14320
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4025
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1068
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 906
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 920
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1050
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42600
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ile147Phe
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
reference allele: T
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS

19-15079228-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15079228
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 15079228
    reference: chr 19
allele count: 47
allele frequency: 4.081490873091686e-4
allele num: 115154
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105143
  ensembl transcript: ENST00000596697
  gene symbol: SLC1A6
  hgvsc: ENST00000596697.1:n.2798C>T
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000409386
  ensembl transcript: ENST00000430939
  gene symbol: SLC1A6
  hgvsc: ENST00000430939.2:c.356+3321C>T
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471562
  ensembl transcript: ENST00000597262
  gene symbol: SLC1A6
  hgvsc: ENST00000597262.1:c.435C>T
  hgvsp: ENST00000597262.1:c.435C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471781
  ensembl transcript: ENST00000598504
  gene symbol: SLC1A6
  hgvsc: ENST00000598504.1:c.435C>T
  hgvsp: ENST00000598504.1:c.435C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000221742
  ensembl transcript: ENST00000221742
  gene symbol: SLC1A6
  hgvsc: ENST00000221742.3:c.435C>T
  hgvsp: ENST00000221742.3:c.435C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471038
  ensembl transcript: ENST00000600144
  gene symbol: SLC1A6
  hgvsc: ENST00000600144.1:c.435C>T
  hgvsp: ENST00000600144.1:c.435C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000446175
  ensembl transcript: ENST00000544886
  gene symbol: SLC1A6
  hgvsc: ENST00000544886.2:c.435C>T
  hgvsp: ENST00000544886.2:c.435C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10944
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2976
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3082
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32655
  bin: 2.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2489
  bin: 3.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3125
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14644
  bin: 2.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 4.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1111
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1223
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4765
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1158
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3793
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 680
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ile145Ile
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: ClippingRankSum

19-15079230-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15079230
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 15079230
    reference: chr 19
allele count: 10
allele frequency: 8.683419878084785e-5
allele num: 115162
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471038
  ensembl transcript: ENST00000600144
  gene symbol: SLC1A6
  hgvsc: ENST00000600144.1:c.433A>G
  hgvsp: ENSP00000471038.1:p.Ile145Val
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471562
  ensembl transcript: ENST00000597262
  gene symbol: SLC1A6
  hgvsc: ENST00000597262.1:c.433A>G
  hgvsp: ENSP00000471562.1:p.Ile145Val
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000221742
  ensembl transcript: ENST00000221742
  gene symbol: SLC1A6
  hgvsc: ENST00000221742.3:c.433A>G
  hgvsp: ENSP00000221742.3:p.Ile145Val
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000446175
  ensembl transcript: ENST00000544886
  gene symbol: SLC1A6
  hgvsc: ENST00000544886.2:c.433A>G
  hgvsp: ENSP00000446175.1:p.Ile145Val
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471781
  ensembl transcript: ENST00000598504
  gene symbol: SLC1A6
  hgvsc: ENST00000598504.1:c.433A>G
  hgvsp: ENSP00000471781.1:p.Ile145Val
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105143
  ensembl transcript: ENST00000596697
  gene symbol: SLC1A6
  hgvsc: ENST00000596697.1:n.2796A>G
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000409386
  ensembl transcript: ENST00000430939
  gene symbol: SLC1A6
  hgvsc: ENST00000430939.2:c.356+3319A>G
  variant of: http://identifiers.org/hgnc/10944
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32734
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3216
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2374
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3136
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3043
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14509
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1131
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3835
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1178
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4875
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1124
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ile145Val
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: European (Finnish)
reference allele: T
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/19-15079236-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15079236
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 15079236
    reference: chr 19
allele count: 1
allele frequency: 8.706402688537151e-6
allele num: 114858
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000446175
  ensembl transcript: ENST00000544886
  gene symbol: SLC1A6
  hgvsc: ENST00000544886.2:c.427G>T
  hgvsp: ENSP00000446175.1:p.Val143Phe
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000409386
  ensembl transcript: ENST00000430939
  gene symbol: SLC1A6
  hgvsc: ENST00000430939.2:c.356+3313G>T
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000221742
  ensembl transcript: ENST00000221742
  gene symbol: SLC1A6
  hgvsc: ENST00000221742.3:c.427G>T
  hgvsp: ENSP00000221742.3:p.Val143Phe
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471781
  ensembl transcript: ENST00000598504
  gene symbol: SLC1A6
  hgvsc: ENST00000598504.1:c.427G>T
  hgvsp: ENSP00000471781.1:p.Val143Phe
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471562
  ensembl transcript: ENST00000597262
  gene symbol: SLC1A6
  hgvsc: ENST00000597262.1:c.427G>T
  hgvsp: ENSP00000471562.1:p.Val143Phe
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105143
  ensembl transcript: ENST00000596697
  gene symbol: SLC1A6
  hgvsc: ENST00000596697.1:n.2790G>T
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471038
  ensembl transcript: ENST00000600144
  gene symbol: SLC1A6
  hgvsc: ENST00000600144.1:c.427G>T
  hgvsp: ENSP00000471038.1:p.Val143Phe
  variant of: http://identifiers.org/hgnc/10944
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14245
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32510
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2351
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3444
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3298
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3146
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1260
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 735
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 575
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 676
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1121
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 40701
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Val143Phe
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD

19-15079236-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15079236
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 15079236
    reference: chr 19
allele count: 1
allele frequency: 8.706402688537151e-6
allele num: 114858
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471562
  ensembl transcript: ENST00000597262
  gene symbol: SLC1A6
  hgvsc: ENST00000597262.1:c.427G>A
  hgvsp: ENSP00000471562.1:p.Val143Ile
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471038
  ensembl transcript: ENST00000600144
  gene symbol: SLC1A6
  hgvsc: ENST00000600144.1:c.427G>A
  hgvsp: ENSP00000471038.1:p.Val143Ile
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000221742
  ensembl transcript: ENST00000221742
  gene symbol: SLC1A6
  hgvsc: ENST00000221742.3:c.427G>A
  hgvsp: ENSP00000221742.3:p.Val143Ile
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000446175
  ensembl transcript: ENST00000544886
  gene symbol: SLC1A6
  hgvsc: ENST00000544886.2:c.427G>A
  hgvsp: ENSP00000446175.1:p.Val143Ile
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471781
  ensembl transcript: ENST00000598504
  gene symbol: SLC1A6
  hgvsc: ENST00000598504.1:c.427G>A
  hgvsp: ENSP00000471781.1:p.Val143Ile
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105143
  ensembl transcript: ENST00000596697
  gene symbol: SLC1A6
  hgvsc: ENST00000596697.1:n.2790G>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000409386
  ensembl transcript: ENST00000430939
  gene symbol: SLC1A6
  hgvsc: ENST00000430939.2:c.356+3313G>A
  variant of: http://identifiers.org/hgnc/10944
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3298
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3146
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32510
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14245
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2351
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3444
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1199
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40701
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1260
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1309
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3775
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5095
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Val143Ile
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff

19-15079241-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15079241
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 15079241
    reference: chr 19
allele count: 1
allele frequency: 8.719764217575556e-6
allele num: 114682
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471781
  ensembl transcript: ENST00000598504
  gene symbol: SLC1A6
  hgvsc: ENST00000598504.1:c.422T>C
  hgvsp: ENSP00000471781.1:p.Ile141Thr
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000409386
  ensembl transcript: ENST00000430939
  gene symbol: SLC1A6
  hgvsc: ENST00000430939.2:c.356+3308T>C
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000472837
  ensembl transcript: ENST00000599636
  gene symbol: SLC1A6
  hgvsc: ENST00000599636.1:c.435T>C
  hgvsp: ENST00000599636.1:c.435T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000221742
  ensembl transcript: ENST00000221742
  gene symbol: SLC1A6
  hgvsc: ENST00000221742.3:c.422T>C
  hgvsp: ENSP00000221742.3:p.Ile141Thr
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000446175
  ensembl transcript: ENST00000544886
  gene symbol: SLC1A6
  hgvsc: ENST00000544886.2:c.422T>C
  hgvsp: ENSP00000446175.1:p.Ile141Thr
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105143
  ensembl transcript: ENST00000596697
  gene symbol: SLC1A6
  hgvsc: ENST00000596697.1:n.2785T>C
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471038
  ensembl transcript: ENST00000600144
  gene symbol: SLC1A6
  hgvsc: ENST00000600144.1:c.422T>C
  hgvsp: ENSP00000471038.1:p.Ile141Thr
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471562
  ensembl transcript: ENST00000597262
  gene symbol: SLC1A6
  hgvsc: ENST00000597262.1:c.422T>C
  hgvsp: ENSP00000471562.1:p.Ile141Thr
  variant of: http://identifiers.org/hgnc/10944
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3271
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14003
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32693
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3368
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2277
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3392
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 741
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1144
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1138
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ile141Thr
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

19-15079245-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15079245
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 15079245
    reference: chr 19
allele count: 1
allele frequency: 8.734387282732117e-6
allele num: 114490
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000221742
  ensembl transcript: ENST00000221742
  gene symbol: SLC1A6
  hgvsc: ENST00000221742.3:c.418A>G
  hgvsp: ENSP00000221742.3:p.Ile140Val
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471038
  ensembl transcript: ENST00000600144
  gene symbol: SLC1A6
  hgvsc: ENST00000600144.1:c.418A>G
  hgvsp: ENSP00000471038.1:p.Ile140Val
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000446175
  ensembl transcript: ENST00000544886
  gene symbol: SLC1A6
  hgvsc: ENST00000544886.2:c.418A>G
  hgvsp: ENSP00000446175.1:p.Ile140Val
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471562
  ensembl transcript: ENST00000597262
  gene symbol: SLC1A6
  hgvsc: ENST00000597262.1:c.418A>G
  hgvsp: ENSP00000471562.1:p.Ile140Val
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000472837
  ensembl transcript: ENST00000599636
  gene symbol: SLC1A6
  hgvsc: ENST00000599636.1:c.431A>G
  hgvsp: ENSP00000472837.1:p.His144Arg
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105143
  ensembl transcript: ENST00000596697
  gene symbol: SLC1A6
  hgvsc: ENST00000596697.1:n.2781A>G
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471781
  ensembl transcript: ENST00000598504
  gene symbol: SLC1A6
  hgvsc: ENST00000598504.1:c.418A>G
  hgvsp: ENSP00000471781.1:p.Ile140Val
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000409386
  ensembl transcript: ENST00000430939
  gene symbol: SLC1A6
  hgvsc: ENST00000430939.2:c.356+3304A>G
  variant of: http://identifiers.org/hgnc/10944
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3451
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2269
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3314
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13807
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3359
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32805
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1121
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3740
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1125
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5465
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ile140Val
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: T
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

19-15079264-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15079264
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 15079264
    reference: chr 19
allele count: 1
allele frequency: 8.844704675310891e-6
allele num: 113062
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471562
  ensembl transcript: ENST00000597262
  gene symbol: SLC1A6
  hgvsc: ENST00000597262.1:c.399G>A
  hgvsp: ENST00000597262.1:c.399G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105143
  ensembl transcript: ENST00000596697
  gene symbol: SLC1A6
  hgvsc: ENST00000596697.1:n.2762G>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471038
  ensembl transcript: ENST00000600144
  gene symbol: SLC1A6
  hgvsc: ENST00000600144.1:c.399G>A
  hgvsp: ENST00000600144.1:c.399G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000446175
  ensembl transcript: ENST00000544886
  gene symbol: SLC1A6
  hgvsc: ENST00000544886.2:c.399G>A
  hgvsp: ENST00000544886.2:c.399G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471781
  ensembl transcript: ENST00000598504
  gene symbol: SLC1A6
  hgvsc: ENST00000598504.1:c.399G>A
  hgvsp: ENST00000598504.1:c.399G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000409386
  ensembl transcript: ENST00000430939
  gene symbol: SLC1A6
  hgvsc: ENST00000430939.2:c.356+3285G>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000472837
  ensembl transcript: ENST00000599636
  gene symbol: SLC1A6
  hgvsc: ENST00000599636.1:c.412G>A
  hgvsp: ENSP00000472837.1:p.Val138Ile
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000221742
  ensembl transcript: ENST00000221742
  gene symbol: SLC1A6
  hgvsc: ENST00000221742.3:c.399G>A
  hgvsp: ENST00000221742.3:c.399G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10944
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2259
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2933
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4033
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13742
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4112
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31905
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 813
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1177
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1029
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 712
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Val138Ile
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: C
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum

19-15079266-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15079266
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 15079266
    reference: chr 19
allele count: 1
allele frequency: 8.861791499769594e-6
allele num: 112844
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471038
  ensembl transcript: ENST00000600144
  gene symbol: SLC1A6
  hgvsc: ENST00000600144.1:c.397G>C
  hgvsp: ENSP00000471038.1:p.Val133Leu
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000221742
  ensembl transcript: ENST00000221742
  gene symbol: SLC1A6
  hgvsc: ENST00000221742.3:c.397G>C
  hgvsp: ENSP00000221742.3:p.Val133Leu
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000446175
  ensembl transcript: ENST00000544886
  gene symbol: SLC1A6
  hgvsc: ENST00000544886.2:c.397G>C
  hgvsp: ENSP00000446175.1:p.Val133Leu
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000409386
  ensembl transcript: ENST00000430939
  gene symbol: SLC1A6
  hgvsc: ENST00000430939.2:c.356+3283G>C
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471562
  ensembl transcript: ENST00000597262
  gene symbol: SLC1A6
  hgvsc: ENST00000597262.1:c.397G>C
  hgvsp: ENSP00000471562.1:p.Val133Leu
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471781
  ensembl transcript: ENST00000598504
  gene symbol: SLC1A6
  hgvsc: ENST00000598504.1:c.397G>C
  hgvsp: ENSP00000471781.1:p.Val133Leu
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000472837
  ensembl transcript: ENST00000599636
  gene symbol: SLC1A6
  hgvsc: ENST00000599636.1:c.410G>C
  hgvsp: ENSP00000472837.1:p.Cys137Ser
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105143
  ensembl transcript: ENST00000596697
  gene symbol: SLC1A6
  hgvsc: ENST00000596697.1:n.2760G>C
  variant of: http://identifiers.org/hgnc/10944
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13725
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4127
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4213
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31718
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2260
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2936
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3535
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 806
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1102
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1192
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Val133Leu
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

19-15079269-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15079269
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 15079269
    reference: chr 19
allele count: 1
allele frequency: 8.881625692766804e-6
allele num: 112592
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105143
  ensembl transcript: ENST00000596697
  gene symbol: SLC1A6
  hgvsc: ENST00000596697.1:n.2757G>C
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000472837
  ensembl transcript: ENST00000599636
  gene symbol: SLC1A6
  hgvsc: ENST00000599636.1:c.407G>C
  hgvsp: ENSP00000472837.1:p.Ser136Thr
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471562
  ensembl transcript: ENST00000597262
  gene symbol: SLC1A6
  hgvsc: ENST00000597262.1:c.394G>C
  hgvsp: ENSP00000471562.1:p.Ala132Pro
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471781
  ensembl transcript: ENST00000598504
  gene symbol: SLC1A6
  hgvsc: ENST00000598504.1:c.394G>C
  hgvsp: ENSP00000471781.1:p.Ala132Pro
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000409386
  ensembl transcript: ENST00000430939
  gene symbol: SLC1A6
  hgvsc: ENST00000430939.2:c.356+3280G>C
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000221742
  ensembl transcript: ENST00000221742
  gene symbol: SLC1A6
  hgvsc: ENST00000221742.3:c.394G>C
  hgvsp: ENSP00000221742.3:p.Ala132Pro
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000446175
  ensembl transcript: ENST00000544886
  gene symbol: SLC1A6
  hgvsc: ENST00000544886.2:c.394G>C
  hgvsp: ENSP00000446175.1:p.Ala132Pro
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471038
  ensembl transcript: ENST00000600144
  gene symbol: SLC1A6
  hgvsc: ENST00000600144.1:c.394G>C
  hgvsp: ENSP00000471038.1:p.Ala132Pro
  variant of: http://identifiers.org/hgnc/10944
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2277
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31925
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13636
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4231
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4194
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2708
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 867
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 705
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1085
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6929
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala132Pro
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: African
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP

19-15079274-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15079274
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 15079274
    reference: chr 19
allele count: 2
allele frequency: 1.784344164302411e-5
allele num: 112086
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471781
  ensembl transcript: ENST00000598504
  gene symbol: SLC1A6
  hgvsc: ENST00000598504.1:c.389G>A
  hgvsp: ENSP00000471781.1:p.Arg130Gln
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471562
  ensembl transcript: ENST00000597262
  gene symbol: SLC1A6
  hgvsc: ENST00000597262.1:c.389G>A
  hgvsp: ENSP00000471562.1:p.Arg130Gln
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000221742
  ensembl transcript: ENST00000221742
  gene symbol: SLC1A6
  hgvsc: ENST00000221742.3:c.389G>A
  hgvsp: ENSP00000221742.3:p.Arg130Gln
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000409386
  ensembl transcript: ENST00000430939
  gene symbol: SLC1A6
  hgvsc: ENST00000430939.2:c.356+3275G>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000446175
  ensembl transcript: ENST00000544886
  gene symbol: SLC1A6
  hgvsc: ENST00000544886.2:c.389G>A
  hgvsp: ENSP00000446175.1:p.Arg130Gln
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105143
  ensembl transcript: ENST00000596697
  gene symbol: SLC1A6
  hgvsc: ENST00000596697.1:n.2752G>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000472837
  ensembl transcript: ENST00000599636
  gene symbol: SLC1A6
  hgvsc: ENST00000599636.1:c.402G>A
  hgvsp: ENST00000599636.1:c.402G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471038
  ensembl transcript: ENST00000600144
  gene symbol: SLC1A6
  hgvsc: ENST00000600144.1:c.389G>A
  hgvsp: ENSP00000471038.1:p.Arg130Gln
  variant of: http://identifiers.org/hgnc/10944
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2299
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4404
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2375
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13539
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4409
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31921
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 377
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1132
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 485
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 878
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg130Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

19-15079275-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15079275
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 15079275
    reference: chr 19
allele count: 3
allele frequency: 2.684515713365309e-5
allele num: 111752
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471038
  ensembl transcript: ENST00000600144
  gene symbol: SLC1A6
  hgvsc: ENST00000600144.1:c.388C>T
  hgvsp: ENSP00000471038.1:p.Arg130Trp
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000446175
  ensembl transcript: ENST00000544886
  gene symbol: SLC1A6
  hgvsc: ENST00000544886.2:c.388C>T
  hgvsp: ENSP00000446175.1:p.Arg130Trp
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000221742
  ensembl transcript: ENST00000221742
  gene symbol: SLC1A6
  hgvsc: ENST00000221742.3:c.388C>T
  hgvsp: ENSP00000221742.3:p.Arg130Trp
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471562
  ensembl transcript: ENST00000597262
  gene symbol: SLC1A6
  hgvsc: ENST00000597262.1:c.388C>T
  hgvsp: ENSP00000471562.1:p.Arg130Trp
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471781
  ensembl transcript: ENST00000598504
  gene symbol: SLC1A6
  hgvsc: ENST00000598504.1:c.388C>T
  hgvsp: ENSP00000471781.1:p.Arg130Trp
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000409386
  ensembl transcript: ENST00000430939
  gene symbol: SLC1A6
  hgvsc: ENST00000430939.2:c.356+3274C>T
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000472837
  ensembl transcript: ENST00000599636
  gene symbol: SLC1A6
  hgvsc: ENST00000599636.1:c.401C>T
  hgvsp: ENSP00000472837.1:p.Ala134Val
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105143
  ensembl transcript: ENST00000596697
  gene symbol: SLC1A6
  hgvsc: ENST00000596697.1:n.2751C>T
  variant of: http://identifiers.org/hgnc/10944
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4483
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31668
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4514
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2321
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2340
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13600
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1036
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 747
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1159
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 717
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg130Trp
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD

19-15079287-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15079287
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 15079287
    reference: chr 19
allele count: 3
allele frequency: 2.74333369911116e-5
allele num: 109356
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000221742
  ensembl transcript: ENST00000221742
  gene symbol: SLC1A6
  hgvsc: ENST00000221742.3:c.376C>T
  hgvsp: ENSP00000221742.3:p.Arg126Trp
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471038
  ensembl transcript: ENST00000600144
  gene symbol: SLC1A6
  hgvsc: ENST00000600144.1:c.376C>T
  hgvsp: ENSP00000471038.1:p.Arg126Trp
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000472837
  ensembl transcript: ENST00000599636
  gene symbol: SLC1A6
  hgvsc: ENST00000599636.1:c.389C>T
  hgvsp: ENSP00000472837.1:p.Ala130Val
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105143
  ensembl transcript: ENST00000596697
  gene symbol: SLC1A6
  hgvsc: ENST00000596697.1:n.2739C>T
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000446175
  ensembl transcript: ENST00000544886
  gene symbol: SLC1A6
  hgvsc: ENST00000544886.2:c.376C>T
  hgvsp: ENSP00000446175.1:p.Arg126Trp
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471781
  ensembl transcript: ENST00000598504
  gene symbol: SLC1A6
  hgvsc: ENST00000598504.1:c.376C>T
  hgvsp: ENSP00000471781.1:p.Arg126Trp
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000409386
  ensembl transcript: ENST00000430939
  gene symbol: SLC1A6
  hgvsc: ENST00000430939.2:c.356+3262C>T
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471562
  ensembl transcript: ENST00000597262
  gene symbol: SLC1A6
  hgvsc: ENST00000597262.1:c.376C>T
  hgvsp: ENSP00000471562.1:p.Arg126Trp
  variant of: http://identifiers.org/hgnc/10944
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5984
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2158
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29597
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2323
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5705
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13153
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1372
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37270
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1118
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1342
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 795
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg126Trp
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: VQSLOD

http://identifiers.org/exac.variant/19-15079291-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15079291
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 15079291
    reference: chr 19
allele count: 2
allele frequency: 1.842231310563354e-5
allele num: 108564
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471562
  ensembl transcript: ENST00000597262
  gene symbol: SLC1A6
  hgvsc: ENST00000597262.1:c.372G>T
  hgvsp: ENST00000597262.1:c.372G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000409386
  ensembl transcript: ENST00000430939
  gene symbol: SLC1A6
  hgvsc: ENST00000430939.2:c.356+3258G>T
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000446175
  ensembl transcript: ENST00000544886
  gene symbol: SLC1A6
  hgvsc: ENST00000544886.2:c.372G>T
  hgvsp: ENST00000544886.2:c.372G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000472837
  ensembl transcript: ENST00000599636
  gene symbol: SLC1A6
  hgvsc: ENST00000599636.1:c.385G>T
  hgvsp: ENSP00000472837.1:p.Gly129Trp
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471038
  ensembl transcript: ENST00000600144
  gene symbol: SLC1A6
  hgvsc: ENST00000600144.1:c.372G>T
  hgvsp: ENST00000600144.1:c.372G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471781
  ensembl transcript: ENST00000598504
  gene symbol: SLC1A6
  hgvsc: ENST00000598504.1:c.372G>T
  hgvsp: ENST00000598504.1:c.372G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000221742
  ensembl transcript: ENST00000221742
  gene symbol: SLC1A6
  hgvsc: ENST00000221742.3:c.372G>T
  hgvsp: ENST00000221742.3:c.372G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105143
  ensembl transcript: ENST00000596697
  gene symbol: SLC1A6
  hgvsc: ENST00000596697.1:n.2735G>T
  variant of: http://identifiers.org/hgnc/10944
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13006
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6119
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2105
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6399
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29192
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2096
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1119
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 834
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 858
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1378
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gly129Trp
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

19-15079291-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15079291
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 15079291
    reference: chr 19
allele count: 3
allele frequency: 2.763346965845032e-5
allele num: 108564
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000409386
  ensembl transcript: ENST00000430939
  gene symbol: SLC1A6
  hgvsc: ENST00000430939.2:c.356+3258G>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471562
  ensembl transcript: ENST00000597262
  gene symbol: SLC1A6
  hgvsc: ENST00000597262.1:c.372G>A
  hgvsp: ENST00000597262.1:c.372G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471038
  ensembl transcript: ENST00000600144
  gene symbol: SLC1A6
  hgvsc: ENST00000600144.1:c.372G>A
  hgvsp: ENST00000600144.1:c.372G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000446175
  ensembl transcript: ENST00000544886
  gene symbol: SLC1A6
  hgvsc: ENST00000544886.2:c.372G>A
  hgvsp: ENST00000544886.2:c.372G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000472837
  ensembl transcript: ENST00000599636
  gene symbol: SLC1A6
  hgvsc: ENST00000599636.1:c.385G>A
  hgvsp: ENSP00000472837.1:p.Gly129Arg
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105143
  ensembl transcript: ENST00000596697
  gene symbol: SLC1A6
  hgvsc: ENST00000596697.1:n.2735G>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000221742
  ensembl transcript: ENST00000221742
  gene symbol: SLC1A6
  hgvsc: ENST00000221742.3:c.372G>A
  hgvsp: ENST00000221742.3:c.372G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471781
  ensembl transcript: ENST00000598504
  gene symbol: SLC1A6
  hgvsc: ENST00000598504.1:c.372G>A
  hgvsp: ENST00000598504.1:c.372G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10944
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29192
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2105
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6399
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2096
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13006
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6119
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1182
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1119
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gly129Arg
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum

19-15079293-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15079293
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 15079293
    reference: chr 19
allele count: 1
allele frequency: 9.29074456026906e-6
allele num: 107634
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471781
  ensembl transcript: ENST00000598504
  gene symbol: SLC1A6
  hgvsc: ENST00000598504.1:c.370A>G
  hgvsp: ENSP00000471781.1:p.Thr124Ala
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000472837
  ensembl transcript: ENST00000599636
  gene symbol: SLC1A6
  hgvsc: ENST00000599636.1:c.383A>G
  hgvsp: ENSP00000472837.1:p.His128Arg
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471038
  ensembl transcript: ENST00000600144
  gene symbol: SLC1A6
  hgvsc: ENST00000600144.1:c.370A>G
  hgvsp: ENSP00000471038.1:p.Thr124Ala
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000221742
  ensembl transcript: ENST00000221742
  gene symbol: SLC1A6
  hgvsc: ENST00000221742.3:c.370A>G
  hgvsp: ENSP00000221742.3:p.Thr124Ala
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000446175
  ensembl transcript: ENST00000544886
  gene symbol: SLC1A6
  hgvsc: ENST00000544886.2:c.370A>G
  hgvsp: ENSP00000446175.1:p.Thr124Ala
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000409386
  ensembl transcript: ENST00000430939
  gene symbol: SLC1A6
  hgvsc: ENST00000430939.2:c.356+3256A>G
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471562
  ensembl transcript: ENST00000597262
  gene symbol: SLC1A6
  hgvsc: ENST00000597262.1:c.370A>G
  hgvsp: ENSP00000471562.1:p.Thr124Ala
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105143
  ensembl transcript: ENST00000596697
  gene symbol: SLC1A6
  hgvsc: ENST00000596697.1:n.2733A>G
  variant of: http://identifiers.org/hgnc/10944
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12628
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1987
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7086
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28464
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2125
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6617
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 658
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11375
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1500
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Thr124Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: African
population: Latino
reference allele: T
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

19-15079295-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15079295
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 15079295
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 107314
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000472837
  ensembl transcript: ENST00000599636
  gene symbol: SLC1A6
  hgvsc: ENST00000599636.1:c.381C>A
  hgvsp: ENST00000599636.1:c.381C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000409386
  ensembl transcript: ENST00000430939
  gene symbol: SLC1A6
  hgvsc: ENST00000430939.2:c.356+3254C>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471038
  ensembl transcript: ENST00000600144
  gene symbol: SLC1A6
  hgvsc: ENST00000600144.1:c.368C>A
  hgvsp: ENSP00000471038.1:p.Ala123Asp
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105143
  ensembl transcript: ENST00000596697
  gene symbol: SLC1A6
  hgvsc: ENST00000596697.1:n.2731C>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471562
  ensembl transcript: ENST00000597262
  gene symbol: SLC1A6
  hgvsc: ENST00000597262.1:c.368C>A
  hgvsp: ENSP00000471562.1:p.Ala123Asp
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000221742
  ensembl transcript: ENST00000221742
  gene symbol: SLC1A6
  hgvsc: ENST00000221742.3:c.368C>A
  hgvsp: ENSP00000221742.3:p.Ala123Asp
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000446175
  ensembl transcript: ENST00000544886
  gene symbol: SLC1A6
  hgvsc: ENST00000544886.2:c.368C>A
  hgvsp: ENSP00000446175.1:p.Ala123Asp
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471781
  ensembl transcript: ENST00000598504
  gene symbol: SLC1A6
  hgvsc: ENST00000598504.1:c.368C>A
  hgvsp: ENSP00000471781.1:p.Ala123Asp
  variant of: http://identifiers.org/hgnc/10944
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6746
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7243
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12580
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1979
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2058
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28301
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1289
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 827
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1114
  bin: 9.75e1
  variant carriers: 0
hgvs: p.Ala123Asp
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: FS

19-15079296-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15079296
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 15079296
    reference: chr 19
allele count: 3
allele frequency: 2.808673182788451e-5
allele num: 106812
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000472837
  ensembl transcript: ENST00000599636
  gene symbol: SLC1A6
  hgvsc: ENST00000599636.1:c.380G>A
  hgvsp: ENSP00000472837.1:p.Gly127Asp
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471781
  ensembl transcript: ENST00000598504
  gene symbol: SLC1A6
  hgvsc: ENST00000598504.1:c.367G>A
  hgvsp: ENSP00000471781.1:p.Ala123Thr
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000409386
  ensembl transcript: ENST00000430939
  gene symbol: SLC1A6
  hgvsc: ENST00000430939.2:c.356+3253G>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471038
  ensembl transcript: ENST00000600144
  gene symbol: SLC1A6
  hgvsc: ENST00000600144.1:c.367G>A
  hgvsp: ENSP00000471038.1:p.Ala123Thr
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471562
  ensembl transcript: ENST00000597262
  gene symbol: SLC1A6
  hgvsc: ENST00000597262.1:c.367G>A
  hgvsp: ENSP00000471562.1:p.Ala123Thr
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000221742
  ensembl transcript: ENST00000221742
  gene symbol: SLC1A6
  hgvsc: ENST00000221742.3:c.367G>A
  hgvsp: ENSP00000221742.3:p.Ala123Thr
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000446175
  ensembl transcript: ENST00000544886
  gene symbol: SLC1A6
  hgvsc: ENST00000544886.2:c.367G>A
  hgvsp: ENSP00000446175.1:p.Ala123Thr
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105143
  ensembl transcript: ENST00000596697
  gene symbol: SLC1A6
  hgvsc: ENST00000596697.1:n.2730G>A
  variant of: http://identifiers.org/hgnc/10944
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27897
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2113
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6988
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12399
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7534
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1962
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 934
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1550
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 878
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ala123Thr
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: Other
reference allele: C
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum

19-15079308-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15079308
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 15079308
    reference: chr 19
allele count: 12
allele frequency: 1.173158141717503e-4
allele num: 102288
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000446175
  ensembl transcript: ENST00000544886
  gene symbol: SLC1A6
  hgvsc: ENST00000544886.2:c.355C>T
  hgvsp: ENST00000544886.2:c.355C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471562
  ensembl transcript: ENST00000597262
  gene symbol: SLC1A6
  hgvsc: ENST00000597262.1:c.355C>T
  hgvsp: ENST00000597262.1:c.355C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000409386
  ensembl transcript: ENST00000430939
  gene symbol: SLC1A6
  hgvsc: ENST00000430939.2:c.356+3241C>T
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000221742
  ensembl transcript: ENST00000221742
  gene symbol: SLC1A6
  hgvsc: ENST00000221742.3:c.355C>T
  hgvsp: ENST00000221742.3:c.355C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000472837
  ensembl transcript: ENST00000599636
  gene symbol: SLC1A6
  hgvsc: ENST00000599636.1:c.368C>T
  hgvsp: ENSP00000472837.1:p.Pro123Leu
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471781
  ensembl transcript: ENST00000598504
  gene symbol: SLC1A6
  hgvsc: ENST00000598504.1:c.355C>T
  hgvsp: ENST00000598504.1:c.355C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471038
  ensembl transcript: ENST00000600144
  gene symbol: SLC1A6
  hgvsc: ENST00000600144.1:c.355C>T
  hgvsp: ENST00000600144.1:c.355C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105143
  ensembl transcript: ENST00000596697
  gene symbol: SLC1A6
  hgvsc: ENST00000596697.1:n.2718C>T
  variant of: http://identifiers.org/hgnc/10944
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24211
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9028
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2287
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10849
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1731
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10670
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 995
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 680
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1125
  bin: 9.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31352
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Pro123Leu
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum

19-15079310-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15079310
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 15079310
    reference: chr 19
allele count: 1
allele frequency: 9.853575862680566e-6
allele num: 101486
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471038
  ensembl transcript: ENST00000600144
  gene symbol: SLC1A6
  hgvsc: ENST00000600144.1:c.353C>T
  hgvsp: ENSP00000471038.1:p.Ser118Phe
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000221742
  ensembl transcript: ENST00000221742
  gene symbol: SLC1A6
  hgvsc: ENST00000221742.3:c.353C>T
  hgvsp: ENSP00000221742.3:p.Ser118Phe
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000409386
  ensembl transcript: ENST00000430939
  gene symbol: SLC1A6
  hgvsc: ENST00000430939.2:c.356+3239C>T
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471781
  ensembl transcript: ENST00000598504
  gene symbol: SLC1A6
  hgvsc: ENST00000598504.1:c.353C>T
  hgvsp: ENSP00000471781.1:p.Ser118Phe
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000446175
  ensembl transcript: ENST00000544886
  gene symbol: SLC1A6
  hgvsc: ENST00000544886.2:c.353C>T
  hgvsp: ENSP00000446175.1:p.Ser118Phe
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471562
  ensembl transcript: ENST00000597262
  gene symbol: SLC1A6
  hgvsc: ENST00000597262.1:c.353C>T
  hgvsp: ENSP00000471562.1:p.Ser118Phe
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105143
  ensembl transcript: ENST00000596697
  gene symbol: SLC1A6
  hgvsc: ENST00000596697.1:n.2716C>T
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000472837
  ensembl transcript: ENST00000599636
  gene symbol: SLC1A6
  hgvsc: ENST00000599636.1:c.366C>T
  hgvsp: ENST00000599636.1:c.366C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10944
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11358
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10448
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2316
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9443
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23511
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1665
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2243
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1007
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser118Phe
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

19-15079337-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15079337
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 15079337
    reference: chr 19
allele count: 1
allele frequency: 1.150165623849834e-5
allele num: 86944
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471038
  ensembl transcript: ENST00000600144
  gene symbol: SLC1A6
  hgvsc: ENST00000600144.1:c.344-18A>C
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471781
  ensembl transcript: ENST00000598504
  gene symbol: SLC1A6
  hgvsc: ENST00000598504.1:c.344-18A>C
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471562
  ensembl transcript: ENST00000597262
  gene symbol: SLC1A6
  hgvsc: ENST00000597262.1:c.344-18A>C
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000446175
  ensembl transcript: ENST00000544886
  gene symbol: SLC1A6
  hgvsc: ENST00000544886.2:c.344-18A>C
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000472837
  ensembl transcript: ENST00000599636
  gene symbol: SLC1A6
  hgvsc: ENST00000599636.1:c.357-18A>C
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl transcript: ENST00000596697
  gene symbol: SLC1A6
  hgvsc: ENST00000596697.1:n.2707-18A>C
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000409386
  ensembl transcript: ENST00000430939
  gene symbol: SLC1A6
  hgvsc: ENST00000430939.2:c.356+3212A>C
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000221742
  ensembl transcript: ENST00000221742
  gene symbol: SLC1A6
  hgvsc: ENST00000221742.3:c.344-18A>C
  variant of: http://identifiers.org/hgnc/10944
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4959
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14775
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4056
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1990
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7363
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24929
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2074
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 914
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 699
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5352
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4918
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29800
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2227
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum

19-15079344-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15079344
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 15079344
    reference: chr 19
allele count: 2
allele frequency: 2.449059561128527e-5
allele num: 81664
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471781
  ensembl transcript: ENST00000598504
  gene symbol: SLC1A6
  hgvsc: ENST00000598504.1:c.344-25G>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000221742
  ensembl transcript: ENST00000221742
  gene symbol: SLC1A6
  hgvsc: ENST00000221742.3:c.344-25G>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000446175
  ensembl transcript: ENST00000544886
  gene symbol: SLC1A6
  hgvsc: ENST00000544886.2:c.344-25G>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471562
  ensembl transcript: ENST00000597262
  gene symbol: SLC1A6
  hgvsc: ENST00000597262.1:c.344-25G>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl transcript: ENST00000596697
  gene symbol: SLC1A6
  hgvsc: ENST00000596697.1:n.2707-25G>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471038
  ensembl transcript: ENST00000600144
  gene symbol: SLC1A6
  hgvsc: ENST00000600144.1:c.344-25G>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000472837
  ensembl transcript: ENST00000599636
  gene symbol: SLC1A6
  hgvsc: ENST00000599636.1:c.357-25G>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000409386
  ensembl transcript: ENST00000430939
  gene symbol: SLC1A6
  hgvsc: ENST00000430939.2:c.356+3205G>A
  variant of: http://identifiers.org/hgnc/10944
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2878
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5052
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5051
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3027
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16095
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26075
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2125
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3319
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1030
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1128
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 472
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Other
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

19-15079345-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15079345
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 15079345
    reference: chr 19
allele count: 2
allele frequency: 2.543364362378554e-5
allele num: 78636
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000221742
  ensembl transcript: ENST00000221742
  gene symbol: SLC1A6
  hgvsc: ENST00000221742.3:c.344-26C>T
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471781
  ensembl transcript: ENST00000598504
  gene symbol: SLC1A6
  hgvsc: ENST00000598504.1:c.344-26C>T
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471038
  ensembl transcript: ENST00000600144
  gene symbol: SLC1A6
  hgvsc: ENST00000600144.1:c.344-26C>T
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000409386
  ensembl transcript: ENST00000430939
  gene symbol: SLC1A6
  hgvsc: ENST00000430939.2:c.356+3204C>T
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471562
  ensembl transcript: ENST00000597262
  gene symbol: SLC1A6
  hgvsc: ENST00000597262.1:c.344-26C>T
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl transcript: ENST00000596697
  gene symbol: SLC1A6
  hgvsc: ENST00000596697.1:n.2707-26C>T
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000472837
  ensembl transcript: ENST00000599636
  gene symbol: SLC1A6
  hgvsc: ENST00000599636.1:c.357-26C>T
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000446175
  ensembl transcript: ENST00000544886
  gene symbol: SLC1A6
  hgvsc: ENST00000544886.2:c.344-26C>T
  variant of: http://identifiers.org/hgnc/10944
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26313
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16714
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2296
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4034
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5465
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3440
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1540
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5579
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5833
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29789
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1836
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1107
  bin: 9.75e1
  variant carriers: 4
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

http://identifiers.org/exac.variant/19-15079347-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15079347
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 15079347
    reference: chr 19
allele count: 2
allele frequency: 2.528892597931366e-5
allele num: 79086
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl transcript: ENST00000596697
  gene symbol: SLC1A6
  hgvsc: ENST00000596697.1:n.2707-28T>G
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000472837
  ensembl transcript: ENST00000599636
  gene symbol: SLC1A6
  hgvsc: ENST00000599636.1:c.357-28T>G
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471038
  ensembl transcript: ENST00000600144
  gene symbol: SLC1A6
  hgvsc: ENST00000600144.1:c.344-28T>G
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000409386
  ensembl transcript: ENST00000430939
  gene symbol: SLC1A6
  hgvsc: ENST00000430939.2:c.356+3202T>G
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000446175
  ensembl transcript: ENST00000544886
  gene symbol: SLC1A6
  hgvsc: ENST00000544886.2:c.344-28T>G
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471781
  ensembl transcript: ENST00000598504
  gene symbol: SLC1A6
  hgvsc: ENST00000598504.1:c.344-28T>G
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000221742
  ensembl transcript: ENST00000221742
  gene symbol: SLC1A6
  hgvsc: ENST00000221742.3:c.344-28T>G
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471562
  ensembl transcript: ENST00000597262
  gene symbol: SLC1A6
  hgvsc: ENST00000597262.1:c.344-28T>G
  variant of: http://identifiers.org/hgnc/10944
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2270
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5037
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3506
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4073
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26397
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17026
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5114
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1424
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 692
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5850
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1423
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30634
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum

19-15079354-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15079354
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 15079354
    reference: chr 19
allele count: 1
allele frequency: 1.337577913913485e-5
allele num: 74762
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471038
  ensembl transcript: ENST00000600144
  gene symbol: SLC1A6
  hgvsc: ENST00000600144.1:c.344-35A>G
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000472837
  ensembl transcript: ENST00000599636
  gene symbol: SLC1A6
  hgvsc: ENST00000599636.1:c.357-35A>G
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000221742
  ensembl transcript: ENST00000221742
  gene symbol: SLC1A6
  hgvsc: ENST00000221742.3:c.344-35A>G
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471562
  ensembl transcript: ENST00000597262
  gene symbol: SLC1A6
  hgvsc: ENST00000597262.1:c.344-35A>G
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471781
  ensembl transcript: ENST00000598504
  gene symbol: SLC1A6
  hgvsc: ENST00000598504.1:c.344-35A>G
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000446175
  ensembl transcript: ENST00000544886
  gene symbol: SLC1A6
  hgvsc: ENST00000544886.2:c.344-35A>G
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000409386
  ensembl transcript: ENST00000430939
  gene symbol: SLC1A6
  hgvsc: ENST00000430939.2:c.356+3195A>G
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl transcript: ENST00000596697
  gene symbol: SLC1A6
  hgvsc: ENST00000596697.1:n.2707-35A>G
  variant of: http://identifiers.org/hgnc/10944
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5542
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25901
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4343
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1696
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18218
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2656
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 556
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1824
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5718
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2156
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP

19-15079365-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15079365
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 15079365
    reference: chr 19
allele count: 30
allele frequency: 4.945435363159803e-4
allele num: 60662
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000221742
  ensembl transcript: ENST00000221742
  gene symbol: SLC1A6
  hgvsc: ENST00000221742.3:c.344-46G>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471562
  ensembl transcript: ENST00000597262
  gene symbol: SLC1A6
  hgvsc: ENST00000597262.1:c.344-46G>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471038
  ensembl transcript: ENST00000600144
  gene symbol: SLC1A6
  hgvsc: ENST00000600144.1:c.344-46G>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl transcript: ENST00000596697
  gene symbol: SLC1A6
  hgvsc: ENST00000596697.1:n.2707-46G>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000446175
  ensembl transcript: ENST00000544886
  gene symbol: SLC1A6
  hgvsc: ENST00000544886.2:c.344-46G>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471781
  ensembl transcript: ENST00000598504
  gene symbol: SLC1A6
  hgvsc: ENST00000598504.1:c.344-46G>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000409386
  ensembl transcript: ENST00000430939
  gene symbol: SLC1A6
  hgvsc: ENST00000430939.2:c.356+3184G>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000472837
  ensembl transcript: ENST00000599636
  gene symbol: SLC1A6
  hgvsc: ENST00000599636.1:c.357-46G>A
  variant of: http://identifiers.org/hgnc/10944
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5132
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 23866
  bin: 7.5e0
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20662
  bin: 1.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5934
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5462
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 20584
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7182
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1217
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2783
  bin: 3.75e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

19-15079366-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15079366
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 15079366
    reference: chr 19
allele count: 4
allele frequency: 6.627564038837525e-5
allele num: 60354
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000221742
  ensembl transcript: ENST00000221742
  gene symbol: SLC1A6
  hgvsc: ENST00000221742.3:c.344-47C>T
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000409386
  ensembl transcript: ENST00000430939
  gene symbol: SLC1A6
  hgvsc: ENST00000430939.2:c.356+3183C>T
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471781
  ensembl transcript: ENST00000598504
  gene symbol: SLC1A6
  hgvsc: ENST00000598504.1:c.344-47C>T
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl transcript: ENST00000596697
  gene symbol: SLC1A6
  hgvsc: ENST00000596697.1:n.2707-47C>T
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471038
  ensembl transcript: ENST00000600144
  gene symbol: SLC1A6
  hgvsc: ENST00000600144.1:c.344-47C>T
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471562
  ensembl transcript: ENST00000597262
  gene symbol: SLC1A6
  hgvsc: ENST00000597262.1:c.344-47C>T
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000446175
  ensembl transcript: ENST00000544886
  gene symbol: SLC1A6
  hgvsc: ENST00000544886.2:c.344-47C>T
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000472837
  ensembl transcript: ENST00000599636
  gene symbol: SLC1A6
  hgvsc: ENST00000599636.1:c.357-47C>T
  variant of: http://identifiers.org/hgnc/10944
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24008
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5148
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5847
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20605
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1809
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2763
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20829
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1139
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5709
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1108
  bin: 9.75e1
  variant carriers: 6
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum

19-15082511-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15082511
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 15082511
    reference: chr 19
allele count: 8
allele frequency: 6.677796327212021e-5
allele num: 119800
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471562
  ensembl transcript: ENST00000597262
  gene symbol: SLC1A6
  hgvsc: ENST00000597262.1:c.343+38G>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471781
  ensembl transcript: ENST00000598504
  gene symbol: SLC1A6
  hgvsc: ENST00000598504.1:c.343+38G>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471038
  ensembl transcript: ENST00000600144
  gene symbol: SLC1A6
  hgvsc: ENST00000600144.1:c.343+38G>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000472837
  ensembl transcript: ENST00000599636
  gene symbol: SLC1A6
  hgvsc: ENST00000599636.1:c.356+38G>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000409386
  ensembl transcript: ENST00000430939
  gene symbol: SLC1A6
  hgvsc: ENST00000430939.2:c.356+38G>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000221742
  ensembl transcript: ENST00000221742
  gene symbol: SLC1A6
  hgvsc: ENST00000221742.3:c.343+38G>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000446175
  ensembl transcript: ENST00000544886
  gene symbol: SLC1A6
  hgvsc: ENST00000544886.2:c.343+38G>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl transcript: ENST00000596697
  gene symbol: SLC1A6
  hgvsc: ENST00000596697.1:n.2706+38G>A
  variant of: http://identifiers.org/hgnc/10944
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12671
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8265
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7481
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1871
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5442
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3270
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1883
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14423
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 880
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3429
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4948
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7261
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP

19-15082512-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15082512
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 15082512
    reference: chr 19
allele count: 4
allele frequency: 3.334889615153738e-5
allele num: 119944
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471781
  ensembl transcript: ENST00000598504
  gene symbol: SLC1A6
  hgvsc: ENST00000598504.1:c.343+37C>T
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000446175
  ensembl transcript: ENST00000544886
  gene symbol: SLC1A6
  hgvsc: ENST00000544886.2:c.343+37C>T
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000472837
  ensembl transcript: ENST00000599636
  gene symbol: SLC1A6
  hgvsc: ENST00000599636.1:c.356+37C>T
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000221742
  ensembl transcript: ENST00000221742
  gene symbol: SLC1A6
  hgvsc: ENST00000221742.3:c.343+37C>T
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471038
  ensembl transcript: ENST00000600144
  gene symbol: SLC1A6
  hgvsc: ENST00000600144.1:c.343+37C>T
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl transcript: ENST00000596697
  gene symbol: SLC1A6
  hgvsc: ENST00000596697.1:n.2706+37C>T
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471562
  ensembl transcript: ENST00000597262
  gene symbol: SLC1A6
  hgvsc: ENST00000597262.1:c.343+37C>T
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000409386
  ensembl transcript: ENST00000430939
  gene symbol: SLC1A6
  hgvsc: ENST00000430939.2:c.356+37C>T
  variant of: http://identifiers.org/hgnc/10944
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1828
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7544
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1869
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8261
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12678
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14483
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3271
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5444
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17603
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 872
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4947
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

19-15082516-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15082516
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 15082516
    reference: chr 19
allele count: 1
allele frequency: 8.331666999933347e-6
allele num: 120024
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000472837
  ensembl transcript: ENST00000599636
  gene symbol: SLC1A6
  hgvsc: ENST00000599636.1:c.356+33G>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000221742
  ensembl transcript: ENST00000221742
  gene symbol: SLC1A6
  hgvsc: ENST00000221742.3:c.343+33G>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471781
  ensembl transcript: ENST00000598504
  gene symbol: SLC1A6
  hgvsc: ENST00000598504.1:c.343+33G>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl transcript: ENST00000596697
  gene symbol: SLC1A6
  hgvsc: ENST00000596697.1:n.2706+33G>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000446175
  ensembl transcript: ENST00000544886
  gene symbol: SLC1A6
  hgvsc: ENST00000544886.2:c.343+33G>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471562
  ensembl transcript: ENST00000597262
  gene symbol: SLC1A6
  hgvsc: ENST00000597262.1:c.343+33G>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471038
  ensembl transcript: ENST00000600144
  gene symbol: SLC1A6
  hgvsc: ENST00000600144.1:c.343+33G>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000409386
  ensembl transcript: ENST00000430939
  gene symbol: SLC1A6
  hgvsc: ENST00000430939.2:c.356+33G>A
  variant of: http://identifiers.org/hgnc/10944
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14693
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12694
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1640
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5438
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1869
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3266
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7855
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8262
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3186
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3428
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4953
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13360
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 18297
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

19-15082520-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15082520
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 15082520
    reference: chr 19
allele count: 1
allele frequency: 8.324038157390913e-6
allele num: 120134
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl transcript: ENST00000596697
  gene symbol: SLC1A6
  hgvsc: ENST00000596697.1:n.2706+29C>T
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000472837
  ensembl transcript: ENST00000599636
  gene symbol: SLC1A6
  hgvsc: ENST00000599636.1:c.356+29C>T
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000221742
  ensembl transcript: ENST00000221742
  gene symbol: SLC1A6
  hgvsc: ENST00000221742.3:c.343+29C>T
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000409386
  ensembl transcript: ENST00000430939
  gene symbol: SLC1A6
  hgvsc: ENST00000430939.2:c.356+29C>T
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000446175
  ensembl transcript: ENST00000544886
  gene symbol: SLC1A6
  hgvsc: ENST00000544886.2:c.343+29C>T
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471038
  ensembl transcript: ENST00000600144
  gene symbol: SLC1A6
  hgvsc: ENST00000600144.1:c.343+29C>T
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471781
  ensembl transcript: ENST00000598504
  gene symbol: SLC1A6
  hgvsc: ENST00000598504.1:c.343+29C>T
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471562
  ensembl transcript: ENST00000597262
  gene symbol: SLC1A6
  hgvsc: ENST00000597262.1:c.343+29C>T
  variant of: http://identifiers.org/hgnc/10944
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3267
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14840
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8266
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8174
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12720
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1870
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5434
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4952
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3184
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 526
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 602
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18825
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7376
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ

19-15082520-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15082520
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 15082520
    reference: chr 19
allele count: 3
allele frequency: 2.497211447217274e-5
allele num: 120134
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000446175
  ensembl transcript: ENST00000544886
  gene symbol: SLC1A6
  hgvsc: ENST00000544886.2:c.343+29C>G
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471781
  ensembl transcript: ENST00000598504
  gene symbol: SLC1A6
  hgvsc: ENST00000598504.1:c.343+29C>G
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000409386
  ensembl transcript: ENST00000430939
  gene symbol: SLC1A6
  hgvsc: ENST00000430939.2:c.356+29C>G
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000221742
  ensembl transcript: ENST00000221742
  gene symbol: SLC1A6
  hgvsc: ENST00000221742.3:c.343+29C>G
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000472837
  ensembl transcript: ENST00000599636
  gene symbol: SLC1A6
  hgvsc: ENST00000599636.1:c.356+29C>G
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471038
  ensembl transcript: ENST00000600144
  gene symbol: SLC1A6
  hgvsc: ENST00000600144.1:c.343+29C>G
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl transcript: ENST00000596697
  gene symbol: SLC1A6
  hgvsc: ENST00000596697.1:n.2706+29C>G
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471562
  ensembl transcript: ENST00000597262
  gene symbol: SLC1A6
  hgvsc: ENST00000597262.1:c.343+29C>G
  variant of: http://identifiers.org/hgnc/10944
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8174
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12720
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8266
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14840
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3267
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1870
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5434
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 789
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4221
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4952
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 602
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum

19-15082521-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15082521
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 15082521
    reference: chr 19
allele count: 1
allele frequency: 8.321821480285606e-6
allele num: 120166
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000472837
  ensembl transcript: ENST00000599636
  gene symbol: SLC1A6
  hgvsc: ENST00000599636.1:c.356+28T>C
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471781
  ensembl transcript: ENST00000598504
  gene symbol: SLC1A6
  hgvsc: ENST00000598504.1:c.343+28T>C
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471038
  ensembl transcript: ENST00000600144
  gene symbol: SLC1A6
  hgvsc: ENST00000600144.1:c.343+28T>C
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl transcript: ENST00000596697
  gene symbol: SLC1A6
  hgvsc: ENST00000596697.1:n.2706+28T>C
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000221742
  ensembl transcript: ENST00000221742
  gene symbol: SLC1A6
  hgvsc: ENST00000221742.3:c.343+28T>C
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471562
  ensembl transcript: ENST00000597262
  gene symbol: SLC1A6
  hgvsc: ENST00000597262.1:c.343+28T>C
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000446175
  ensembl transcript: ENST00000544886
  gene symbol: SLC1A6
  hgvsc: ENST00000544886.2:c.343+28T>C
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000409386
  ensembl transcript: ENST00000430939
  gene symbol: SLC1A6
  hgvsc: ENST00000430939.2:c.356+28T>C
  variant of: http://identifiers.org/hgnc/10944
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8264
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14889
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3266
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8233
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12726
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1869
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5436
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4963
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 773
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 486
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18900
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: A
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD

19-15082527-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15082527
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 15082527
    reference: chr 19
allele count: 1
allele frequency: 8.30813199960121e-6
allele num: 120364
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471562
  ensembl transcript: ENST00000597262
  gene symbol: SLC1A6
  hgvsc: ENST00000597262.1:c.343+22T>C
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000472837
  ensembl transcript: ENST00000599636
  gene symbol: SLC1A6
  hgvsc: ENST00000599636.1:c.356+22T>C
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471781
  ensembl transcript: ENST00000598504
  gene symbol: SLC1A6
  hgvsc: ENST00000598504.1:c.343+22T>C
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl transcript: ENST00000596697
  gene symbol: SLC1A6
  hgvsc: ENST00000596697.1:n.2706+22T>C
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000446175
  ensembl transcript: ENST00000544886
  gene symbol: SLC1A6
  hgvsc: ENST00000544886.2:c.343+22T>C
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471038
  ensembl transcript: ENST00000600144
  gene symbol: SLC1A6
  hgvsc: ENST00000600144.1:c.343+22T>C
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000409386
  ensembl transcript: ENST00000430939
  gene symbol: SLC1A6
  hgvsc: ENST00000430939.2:c.356+22T>C
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000221742
  ensembl transcript: ENST00000221742
  gene symbol: SLC1A6
  hgvsc: ENST00000221742.3:c.343+22T>C
  variant of: http://identifiers.org/hgnc/10944
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5434
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8591
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15133
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 984
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1870
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3264
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8260
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12757
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3186
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 670
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2128
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19577
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: A
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/19-15082530-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15082530
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 15082530
    reference: chr 19
allele count: 5
allele frequency: 4.151927324664109e-5
allele num: 120426
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471038
  ensembl transcript: ENST00000600144
  gene symbol: SLC1A6
  hgvsc: ENST00000600144.1:c.343+19G>T
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471781
  ensembl transcript: ENST00000598504
  gene symbol: SLC1A6
  hgvsc: ENST00000598504.1:c.343+19G>T
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471562
  ensembl transcript: ENST00000597262
  gene symbol: SLC1A6
  hgvsc: ENST00000597262.1:c.343+19G>T
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000472837
  ensembl transcript: ENST00000599636
  gene symbol: SLC1A6
  hgvsc: ENST00000599636.1:c.356+19G>T
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000409386
  ensembl transcript: ENST00000430939
  gene symbol: SLC1A6
  hgvsc: ENST00000430939.2:c.356+19G>T
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000221742
  ensembl transcript: ENST00000221742
  gene symbol: SLC1A6
  hgvsc: ENST00000221742.3:c.343+19G>T
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000446175
  ensembl transcript: ENST00000544886
  gene symbol: SLC1A6
  hgvsc: ENST00000544886.2:c.343+19G>T
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl transcript: ENST00000596697
  gene symbol: SLC1A6
  hgvsc: ENST00000596697.1:n.2706+19G>T
  variant of: http://identifiers.org/hgnc/10944
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12786
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15264
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5433
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1869
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8735
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3264
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8257
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3185
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2127
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3462
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD

19-15082537-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15082537
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 15082537
    reference: chr 19
allele count: 1
allele frequency: 8.283768783445716e-6
allele num: 120718
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000409386
  ensembl transcript: ENST00000430939
  gene symbol: SLC1A6
  hgvsc: ENST00000430939.2:c.356+12C>T
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471038
  ensembl transcript: ENST00000600144
  gene symbol: SLC1A6
  hgvsc: ENST00000600144.1:c.343+12C>T
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl transcript: ENST00000596697
  gene symbol: SLC1A6
  hgvsc: ENST00000596697.1:n.2706+12C>T
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000472837
  ensembl transcript: ENST00000599636
  gene symbol: SLC1A6
  hgvsc: ENST00000599636.1:c.356+12C>T
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471562
  ensembl transcript: ENST00000597262
  gene symbol: SLC1A6
  hgvsc: ENST00000597262.1:c.343+12C>T
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000446175
  ensembl transcript: ENST00000544886
  gene symbol: SLC1A6
  hgvsc: ENST00000544886.2:c.343+12C>T
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000221742
  ensembl transcript: ENST00000221742
  gene symbol: SLC1A6
  hgvsc: ENST00000221742.3:c.343+12C>T
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471781
  ensembl transcript: ENST00000598504
  gene symbol: SLC1A6
  hgvsc: ENST00000598504.1:c.343+12C>T
  variant of: http://identifiers.org/hgnc/10944
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8267
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15519
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9062
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12822
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3265
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5437
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1870
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7506
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3184
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20460
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

19-15082579-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15082579
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 15082579
    reference: chr 19
allele count: 1
allele frequency: 8.241984669908513e-6
allele num: 121330
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000469551
  ensembl transcript: ENST00000595863
  gene symbol: SLC1A6
  hgvsc: ENST00000595863.1:c.313T>C
  hgvsp: ENST00000595863.1:c.313T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000472837
  ensembl transcript: ENST00000599636
  gene symbol: SLC1A6
  hgvsc: ENST00000599636.1:c.326T>C
  hgvsp: ENSP00000472837.1:p.Val109Ala
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471781
  ensembl transcript: ENST00000598504
  gene symbol: SLC1A6
  hgvsc: ENST00000598504.1:c.313T>C
  hgvsp: ENST00000598504.1:c.313T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000409386
  ensembl transcript: ENST00000430939
  gene symbol: SLC1A6
  hgvsc: ENST00000430939.2:c.326T>C
  hgvsp: ENSP00000409386.2:p.Val109Ala
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471562
  ensembl transcript: ENST00000597262
  gene symbol: SLC1A6
  hgvsc: ENST00000597262.1:c.313T>C
  hgvsp: ENST00000597262.1:c.313T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000221742
  ensembl transcript: ENST00000221742
  gene symbol: SLC1A6
  hgvsc: ENST00000221742.3:c.313T>C
  hgvsp: ENST00000221742.3:c.313T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471038
  ensembl transcript: ENST00000600144
  gene symbol: SLC1A6
  hgvsc: ENST00000600144.1:c.313T>C
  hgvsp: ENST00000600144.1:c.313T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000446175
  ensembl transcript: ENST00000544886
  gene symbol: SLC1A6
  hgvsc: ENST00000544886.2:c.313T>C
  hgvsp: ENST00000544886.2:c.313T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105143
  ensembl transcript: ENST00000596697
  gene symbol: SLC1A6
  hgvsc: ENST00000596697.1:n.2676T>C
  variant of: http://identifiers.org/hgnc/10944
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1869
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16172
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8262
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3264
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12964
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9297
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5431
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3181
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Val109Ala
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum

19-15082601-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15082601
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 15082601
    reference: chr 19
allele count: 1
allele frequency: 8.239268352970255e-6
allele num: 121370
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000409386
  ensembl transcript: ENST00000430939
  gene symbol: SLC1A6
  hgvsc: ENST00000430939.2:c.304G>A
  hgvsp: ENSP00000409386.2:p.Glu102Lys
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471781
  ensembl transcript: ENST00000598504
  gene symbol: SLC1A6
  hgvsc: ENST00000598504.1:c.291G>A
  hgvsp: ENSP00000471781.1:p.Met97Ile
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000469551
  ensembl transcript: ENST00000595863
  gene symbol: SLC1A6
  hgvsc: ENST00000595863.1:c.291G>A
  hgvsp: ENSP00000469551.1:p.Met97Ile
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471038
  ensembl transcript: ENST00000600144
  gene symbol: SLC1A6
  hgvsc: ENST00000600144.1:c.291G>A
  hgvsp: ENSP00000471038.1:p.Met97Ile
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000446175
  ensembl transcript: ENST00000544886
  gene symbol: SLC1A6
  hgvsc: ENST00000544886.2:c.291G>A
  hgvsp: ENSP00000446175.1:p.Met97Ile
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000472837
  ensembl transcript: ENST00000599636
  gene symbol: SLC1A6
  hgvsc: ENST00000599636.1:c.304G>A
  hgvsp: ENSP00000472837.1:p.Glu102Lys
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471562
  ensembl transcript: ENST00000597262
  gene symbol: SLC1A6
  hgvsc: ENST00000597262.1:c.291G>A
  hgvsp: ENSP00000471562.1:p.Met97Ile
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105143
  ensembl transcript: ENST00000596697
  gene symbol: SLC1A6
  hgvsc: ENST00000596697.1:n.2654G>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000221742
  ensembl transcript: ENST00000221742
  gene symbol: SLC1A6
  hgvsc: ENST00000221742.3:c.291G>A
  hgvsp: ENSP00000221742.3:p.Met97Ile
  variant of: http://identifiers.org/hgnc/10944
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8261
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16205
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9308
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5430
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12966
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1869
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3264
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4235
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Met97Ile
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: DP

19-15082610-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15082610
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 15082610
    reference: chr 19
allele count: 1
allele frequency: 8.2387253044209e-6
allele num: 121378
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000469551
  ensembl transcript: ENST00000595863
  gene symbol: SLC1A6
  hgvsc: ENST00000595863.1:c.282G>C
  hgvsp: ENSP00000469551.1:p.Glu94Asp
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000446175
  ensembl transcript: ENST00000544886
  gene symbol: SLC1A6
  hgvsc: ENST00000544886.2:c.282G>C
  hgvsp: ENSP00000446175.1:p.Glu94Asp
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471781
  ensembl transcript: ENST00000598504
  gene symbol: SLC1A6
  hgvsc: ENST00000598504.1:c.282G>C
  hgvsp: ENSP00000471781.1:p.Glu94Asp
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000409386
  ensembl transcript: ENST00000430939
  gene symbol: SLC1A6
  hgvsc: ENST00000430939.2:c.295G>C
  hgvsp: ENSP00000409386.2:p.Ala99Pro
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471562
  ensembl transcript: ENST00000597262
  gene symbol: SLC1A6
  hgvsc: ENST00000597262.1:c.282G>C
  hgvsp: ENSP00000471562.1:p.Glu94Asp
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105143
  ensembl transcript: ENST00000596697
  gene symbol: SLC1A6
  hgvsc: ENST00000596697.1:n.2645G>C
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000472837
  ensembl transcript: ENST00000599636
  gene symbol: SLC1A6
  hgvsc: ENST00000599636.1:c.295G>C
  hgvsp: ENSP00000472837.1:p.Ala99Pro
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471038
  ensembl transcript: ENST00000600144
  gene symbol: SLC1A6
  hgvsc: ENST00000600144.1:c.282G>C
  hgvsp: ENSP00000471038.1:p.Glu94Asp
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000221742
  ensembl transcript: ENST00000221742
  gene symbol: SLC1A6
  hgvsc: ENST00000221742.3:c.282G>C
  hgvsp: ENSP00000221742.3:p.Glu94Asp
  variant of: http://identifiers.org/hgnc/10944
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12967
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9312
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16205
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3264
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8263
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1869
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5430
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13356
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3496
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2129
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4236
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Glu94Asp
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum

19-15082641-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15082641
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 15082641
    reference: chr 19
allele count: 2
allele frequency: 1.647826516824309e-5
allele num: 121372
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000469551
  ensembl transcript: ENST00000595863
  gene symbol: SLC1A6
  hgvsc: ENST00000595863.1:c.251G>A
  hgvsp: ENSP00000469551.1:p.Arg84His
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000446175
  ensembl transcript: ENST00000544886
  gene symbol: SLC1A6
  hgvsc: ENST00000544886.2:c.251G>A
  hgvsp: ENSP00000446175.1:p.Arg84His
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471562
  ensembl transcript: ENST00000597262
  gene symbol: SLC1A6
  hgvsc: ENST00000597262.1:c.251G>A
  hgvsp: ENSP00000471562.1:p.Arg84His
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471038
  ensembl transcript: ENST00000600144
  gene symbol: SLC1A6
  hgvsc: ENST00000600144.1:c.251G>A
  hgvsp: ENSP00000471038.1:p.Arg84His
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471781
  ensembl transcript: ENST00000598504
  gene symbol: SLC1A6
  hgvsc: ENST00000598504.1:c.251G>A
  hgvsp: ENSP00000471781.1:p.Arg84His
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000221742
  ensembl transcript: ENST00000221742
  gene symbol: SLC1A6
  hgvsc: ENST00000221742.3:c.251G>A
  hgvsp: ENSP00000221742.3:p.Arg84His
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000472837
  ensembl transcript: ENST00000599636
  gene symbol: SLC1A6
  hgvsc: ENST00000599636.1:c.264G>A
  hgvsp: ENST00000599636.1:c.264G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105143
  ensembl transcript: ENST00000596697
  gene symbol: SLC1A6
  hgvsc: ENST00000596697.1:n.2614G>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000409386
  ensembl transcript: ENST00000430939
  gene symbol: SLC1A6
  hgvsc: ENST00000430939.2:c.264G>A
  hgvsp: ENST00000430939.2:c.264G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10944
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12961
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5430
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8261
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3264
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1869
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9301
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16206
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 13355
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2129
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg84His
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD

19-15082642-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15082642
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 15082642
    reference: chr 19
allele count: 1
allele frequency: 8.239132584121543e-6
allele num: 121372
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000409386
  ensembl transcript: ENST00000430939
  gene symbol: SLC1A6
  hgvsc: ENST00000430939.2:c.263C>T
  hgvsp: ENSP00000409386.2:p.Pro88Leu
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471562
  ensembl transcript: ENST00000597262
  gene symbol: SLC1A6
  hgvsc: ENST00000597262.1:c.250C>T
  hgvsp: ENSP00000471562.1:p.Arg84Cys
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000221742
  ensembl transcript: ENST00000221742
  gene symbol: SLC1A6
  hgvsc: ENST00000221742.3:c.250C>T
  hgvsp: ENSP00000221742.3:p.Arg84Cys
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000469551
  ensembl transcript: ENST00000595863
  gene symbol: SLC1A6
  hgvsc: ENST00000595863.1:c.250C>T
  hgvsp: ENSP00000469551.1:p.Arg84Cys
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000472837
  ensembl transcript: ENST00000599636
  gene symbol: SLC1A6
  hgvsc: ENST00000599636.1:c.263C>T
  hgvsp: ENSP00000472837.1:p.Pro88Leu
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471038
  ensembl transcript: ENST00000600144
  gene symbol: SLC1A6
  hgvsc: ENST00000600144.1:c.250C>T
  hgvsp: ENSP00000471038.1:p.Arg84Cys
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000446175
  ensembl transcript: ENST00000544886
  gene symbol: SLC1A6
  hgvsc: ENST00000544886.2:c.250C>T
  hgvsp: ENSP00000446175.1:p.Arg84Cys
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471781
  ensembl transcript: ENST00000598504
  gene symbol: SLC1A6
  hgvsc: ENST00000598504.1:c.250C>T
  hgvsp: ENSP00000471781.1:p.Arg84Cys
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105143
  ensembl transcript: ENST00000596697
  gene symbol: SLC1A6
  hgvsc: ENST00000596697.1:n.2613C>T
  variant of: http://identifiers.org/hgnc/10944
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9299
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3264
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12963
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1870
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16208
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8261
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5429
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7602
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg84Cys
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum

19-15082658-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15082658
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 15082658
    reference: chr 19
allele count: 6
allele frequency: 4.944783253667381e-5
allele num: 121340
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471562
  ensembl transcript: ENST00000597262
  gene symbol: SLC1A6
  hgvsc: ENST00000597262.1:c.234A>C
  hgvsp: ENST00000597262.1:c.234A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000221742
  ensembl transcript: ENST00000221742
  gene symbol: SLC1A6
  hgvsc: ENST00000221742.3:c.234A>C
  hgvsp: ENST00000221742.3:c.234A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471781
  ensembl transcript: ENST00000598504
  gene symbol: SLC1A6
  hgvsc: ENST00000598504.1:c.234A>C
  hgvsp: ENST00000598504.1:c.234A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000446175
  ensembl transcript: ENST00000544886
  gene symbol: SLC1A6
  hgvsc: ENST00000544886.2:c.234A>C
  hgvsp: ENST00000544886.2:c.234A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000409386
  ensembl transcript: ENST00000430939
  gene symbol: SLC1A6
  hgvsc: ENST00000430939.2:c.247A>C
  hgvsp: ENSP00000409386.2:p.Ile83Leu
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000472837
  ensembl transcript: ENST00000599636
  gene symbol: SLC1A6
  hgvsc: ENST00000599636.1:c.247A>C
  hgvsp: ENSP00000472837.1:p.Ile83Leu
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471038
  ensembl transcript: ENST00000600144
  gene symbol: SLC1A6
  hgvsc: ENST00000600144.1:c.234A>C
  hgvsp: ENST00000600144.1:c.234A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105143
  ensembl transcript: ENST00000596697
  gene symbol: SLC1A6
  hgvsc: ENST00000596697.1:n.2597A>C
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000469551
  ensembl transcript: ENST00000595863
  gene symbol: SLC1A6
  hgvsc: ENST00000595863.1:c.234A>C
  hgvsp: ENST00000595863.1:c.234A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10944
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8261
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3264
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9245
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16188
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1870
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12952
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5428
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13358
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ile83Leu
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ

19-15082660-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15082660
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 15082660
    reference: chr 19
allele count: 27
allele frequency: 2.225152464150321e-4
allele num: 121340
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105143
  ensembl transcript: ENST00000596697
  gene symbol: SLC1A6
  hgvsc: ENST00000596697.1:n.2595C>T
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000469551
  ensembl transcript: ENST00000595863
  gene symbol: SLC1A6
  hgvsc: ENST00000595863.1:c.232C>T
  hgvsp: ENSP00000469551.1:p.Pro78Ser
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000472837
  ensembl transcript: ENST00000599636
  gene symbol: SLC1A6
  hgvsc: ENST00000599636.1:c.245C>T
  hgvsp: ENSP00000472837.1:p.Pro82Leu
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471562
  ensembl transcript: ENST00000597262
  gene symbol: SLC1A6
  hgvsc: ENST00000597262.1:c.232C>T
  hgvsp: ENSP00000471562.1:p.Pro78Ser
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000446175
  ensembl transcript: ENST00000544886
  gene symbol: SLC1A6
  hgvsc: ENST00000544886.2:c.232C>T
  hgvsp: ENSP00000446175.1:p.Pro78Ser
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000409386
  ensembl transcript: ENST00000430939
  gene symbol: SLC1A6
  hgvsc: ENST00000430939.2:c.245C>T
  hgvsp: ENSP00000409386.2:p.Pro82Leu
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471781
  ensembl transcript: ENST00000598504
  gene symbol: SLC1A6
  hgvsc: ENST00000598504.1:c.232C>T
  hgvsp: ENSP00000471781.1:p.Pro78Ser
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471038
  ensembl transcript: ENST00000600144
  gene symbol: SLC1A6
  hgvsc: ENST00000600144.1:c.232C>T
  hgvsp: ENSP00000471038.1:p.Pro78Ser
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000221742
  ensembl transcript: ENST00000221742
  gene symbol: SLC1A6
  hgvsc: ENST00000221742.3:c.232C>T
  hgvsp: ENSP00000221742.3:p.Pro78Ser
  variant of: http://identifiers.org/hgnc/10944
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1870
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 9.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16184
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9228
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3259
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8263
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12945
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5425
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4223
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro78Ser
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: East Asian
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

19-15082662-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15082662
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 15082662
    reference: chr 19
allele count: 1
allele frequency: 8.241712957621112e-6
allele num: 121334
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471562
  ensembl transcript: ENST00000597262
  gene symbol: SLC1A6
  hgvsc: ENST00000597262.1:c.230G>C
  hgvsp: ENSP00000471562.1:p.Arg77Pro
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471038
  ensembl transcript: ENST00000600144
  gene symbol: SLC1A6
  hgvsc: ENST00000600144.1:c.230G>C
  hgvsp: ENSP00000471038.1:p.Arg77Pro
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000472837
  ensembl transcript: ENST00000599636
  gene symbol: SLC1A6
  hgvsc: ENST00000599636.1:c.243G>C
  hgvsp: ENST00000599636.1:c.243G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000409386
  ensembl transcript: ENST00000430939
  gene symbol: SLC1A6
  hgvsc: ENST00000430939.2:c.243G>C
  hgvsp: ENST00000430939.2:c.243G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000221742
  ensembl transcript: ENST00000221742
  gene symbol: SLC1A6
  hgvsc: ENST00000221742.3:c.230G>C
  hgvsp: ENSP00000221742.3:p.Arg77Pro
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000469551
  ensembl transcript: ENST00000595863
  gene symbol: SLC1A6
  hgvsc: ENST00000595863.1:c.230G>C
  hgvsp: ENSP00000469551.1:p.Arg77Pro
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105143
  ensembl transcript: ENST00000596697
  gene symbol: SLC1A6
  hgvsc: ENST00000596697.1:n.2593G>C
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000446175
  ensembl transcript: ENST00000544886
  gene symbol: SLC1A6
  hgvsc: ENST00000544886.2:c.230G>C
  hgvsp: ENSP00000446175.1:p.Arg77Pro
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471781
  ensembl transcript: ENST00000598504
  gene symbol: SLC1A6
  hgvsc: ENST00000598504.1:c.230G>C
  hgvsp: ENSP00000471781.1:p.Arg77Pro
  variant of: http://identifiers.org/hgnc/10944
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1869
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3262
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9216
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16189
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5426
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8270
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12951
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg77Pro
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD

19-15082662-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15082662
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 15082662
    reference: chr 19
allele count: 3
allele frequency: 2.472513887286333e-5
allele num: 121334
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000446175
  ensembl transcript: ENST00000544886
  gene symbol: SLC1A6
  hgvsc: ENST00000544886.2:c.230G>A
  hgvsp: ENSP00000446175.1:p.Arg77His
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000469551
  ensembl transcript: ENST00000595863
  gene symbol: SLC1A6
  hgvsc: ENST00000595863.1:c.230G>A
  hgvsp: ENSP00000469551.1:p.Arg77His
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000221742
  ensembl transcript: ENST00000221742
  gene symbol: SLC1A6
  hgvsc: ENST00000221742.3:c.230G>A
  hgvsp: ENSP00000221742.3:p.Arg77His
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471562
  ensembl transcript: ENST00000597262
  gene symbol: SLC1A6
  hgvsc: ENST00000597262.1:c.230G>A
  hgvsp: ENSP00000471562.1:p.Arg77His
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000472837
  ensembl transcript: ENST00000599636
  gene symbol: SLC1A6
  hgvsc: ENST00000599636.1:c.243G>A
  hgvsp: ENST00000599636.1:c.243G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471781
  ensembl transcript: ENST00000598504
  gene symbol: SLC1A6
  hgvsc: ENST00000598504.1:c.230G>A
  hgvsp: ENSP00000471781.1:p.Arg77His
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105143
  ensembl transcript: ENST00000596697
  gene symbol: SLC1A6
  hgvsc: ENST00000596697.1:n.2593G>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471038
  ensembl transcript: ENST00000600144
  gene symbol: SLC1A6
  hgvsc: ENST00000600144.1:c.230G>A
  hgvsp: ENSP00000471038.1:p.Arg77His
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000409386
  ensembl transcript: ENST00000430939
  gene symbol: SLC1A6
  hgvsc: ENST00000430939.2:c.243G>A
  hgvsp: ENST00000430939.2:c.243G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10944
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16189
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5426
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1869
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12951
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8270
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9216
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3262
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4225
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4962
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg77His
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: MQ
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum

19-15082663-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15082663
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 15082663
    reference: chr 19
allele count: 3
allele frequency: 2.472799208704253e-5
allele num: 121320
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471562
  ensembl transcript: ENST00000597262
  gene symbol: SLC1A6
  hgvsc: ENST00000597262.1:c.229C>T
  hgvsp: ENSP00000471562.1:p.Arg77Cys
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471038
  ensembl transcript: ENST00000600144
  gene symbol: SLC1A6
  hgvsc: ENST00000600144.1:c.229C>T
  hgvsp: ENSP00000471038.1:p.Arg77Cys
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000446175
  ensembl transcript: ENST00000544886
  gene symbol: SLC1A6
  hgvsc: ENST00000544886.2:c.229C>T
  hgvsp: ENSP00000446175.1:p.Arg77Cys
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105143
  ensembl transcript: ENST00000596697
  gene symbol: SLC1A6
  hgvsc: ENST00000596697.1:n.2592C>T
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471781
  ensembl transcript: ENST00000598504
  gene symbol: SLC1A6
  hgvsc: ENST00000598504.1:c.229C>T
  hgvsp: ENSP00000471781.1:p.Arg77Cys
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000472837
  ensembl transcript: ENST00000599636
  gene symbol: SLC1A6
  hgvsc: ENST00000599636.1:c.242C>T
  hgvsp: ENSP00000472837.1:p.Ala81Val
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000469551
  ensembl transcript: ENST00000595863
  gene symbol: SLC1A6
  hgvsc: ENST00000595863.1:c.229C>T
  hgvsp: ENSP00000469551.1:p.Arg77Cys
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000221742
  ensembl transcript: ENST00000221742
  gene symbol: SLC1A6
  hgvsc: ENST00000221742.3:c.229C>T
  hgvsp: ENSP00000221742.3:p.Arg77Cys
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000409386
  ensembl transcript: ENST00000430939
  gene symbol: SLC1A6
  hgvsc: ENST00000430939.2:c.242C>T
  hgvsp: ENSP00000409386.2:p.Ala81Val
  variant of: http://identifiers.org/hgnc/10944
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8270
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3261
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1870
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9196
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5428
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12944
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16187
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13343
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7585
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg77Cys
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: ClippingRankSum

19-15082663-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15082663
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 15082663
    reference: chr 19
allele count: 1
allele frequency: 8.242664029014178e-6
allele num: 121320
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000446175
  ensembl transcript: ENST00000544886
  gene symbol: SLC1A6
  hgvsc: ENST00000544886.2:c.229C>G
  hgvsp: ENSP00000446175.1:p.Arg77Gly
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105143
  ensembl transcript: ENST00000596697
  gene symbol: SLC1A6
  hgvsc: ENST00000596697.1:n.2592C>G
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000409386
  ensembl transcript: ENST00000430939
  gene symbol: SLC1A6
  hgvsc: ENST00000430939.2:c.242C>G
  hgvsp: ENSP00000409386.2:p.Ala81Gly
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471038
  ensembl transcript: ENST00000600144
  gene symbol: SLC1A6
  hgvsc: ENST00000600144.1:c.229C>G
  hgvsp: ENSP00000471038.1:p.Arg77Gly
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000472837
  ensembl transcript: ENST00000599636
  gene symbol: SLC1A6
  hgvsc: ENST00000599636.1:c.242C>G
  hgvsp: ENSP00000472837.1:p.Ala81Gly
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471562
  ensembl transcript: ENST00000597262
  gene symbol: SLC1A6
  hgvsc: ENST00000597262.1:c.229C>G
  hgvsp: ENSP00000471562.1:p.Arg77Gly
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000469551
  ensembl transcript: ENST00000595863
  gene symbol: SLC1A6
  hgvsc: ENST00000595863.1:c.229C>G
  hgvsp: ENSP00000469551.1:p.Arg77Gly
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471781
  ensembl transcript: ENST00000598504
  gene symbol: SLC1A6
  hgvsc: ENST00000598504.1:c.229C>G
  hgvsp: ENSP00000471781.1:p.Arg77Gly
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000221742
  ensembl transcript: ENST00000221742
  gene symbol: SLC1A6
  hgvsc: ENST00000221742.3:c.229C>G
  hgvsp: ENSP00000221742.3:p.Arg77Gly
  variant of: http://identifiers.org/hgnc/10944
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9196
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12944
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16187
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5428
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8270
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1870
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3261
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4961
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg77Gly
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum

19-15082666-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15082666
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 15082666
    reference: chr 19
allele count: 1
allele frequency: 8.243615319934711e-6
allele num: 121306
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000409386
  ensembl transcript: ENST00000430939
  gene symbol: SLC1A6
  hgvsc: ENST00000430939.2:c.239C>T
  hgvsp: ENSP00000409386.2:p.Pro80Leu
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471038
  ensembl transcript: ENST00000600144
  gene symbol: SLC1A6
  hgvsc: ENST00000600144.1:c.226C>T
  hgvsp: ENST00000600144.1:c.226C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000472837
  ensembl transcript: ENST00000599636
  gene symbol: SLC1A6
  hgvsc: ENST00000599636.1:c.239C>T
  hgvsp: ENSP00000472837.1:p.Pro80Leu
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471781
  ensembl transcript: ENST00000598504
  gene symbol: SLC1A6
  hgvsc: ENST00000598504.1:c.226C>T
  hgvsp: ENST00000598504.1:c.226C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000221742
  ensembl transcript: ENST00000221742
  gene symbol: SLC1A6
  hgvsc: ENST00000221742.3:c.226C>T
  hgvsp: ENST00000221742.3:c.226C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471562
  ensembl transcript: ENST00000597262
  gene symbol: SLC1A6
  hgvsc: ENST00000597262.1:c.226C>T
  hgvsp: ENST00000597262.1:c.226C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000469551
  ensembl transcript: ENST00000595863
  gene symbol: SLC1A6
  hgvsc: ENST00000595863.1:c.226C>T
  hgvsp: ENST00000595863.1:c.226C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000446175
  ensembl transcript: ENST00000544886
  gene symbol: SLC1A6
  hgvsc: ENST00000544886.2:c.226C>T
  hgvsp: ENST00000544886.2:c.226C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105143
  ensembl transcript: ENST00000596697
  gene symbol: SLC1A6
  hgvsc: ENST00000596697.1:n.2589C>T
  variant of: http://identifiers.org/hgnc/10944
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5425
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16189
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1870
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9191
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8267
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3260
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12941
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4959
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Pro80Leu
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

19-15082684-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15082684
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 15082684
    reference: chr 19
allele count: 4
allele frequency: 3.307206402751596e-5
allele num: 120948
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000469551
  ensembl transcript: ENST00000595863
  gene symbol: SLC1A6
  hgvsc: ENST00000595863.1:c.208G>A
  hgvsp: ENSP00000469551.1:p.Val70Ile
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471562
  ensembl transcript: ENST00000597262
  gene symbol: SLC1A6
  hgvsc: ENST00000597262.1:c.208G>A
  hgvsp: ENSP00000471562.1:p.Val70Ile
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000472837
  ensembl transcript: ENST00000599636
  gene symbol: SLC1A6
  hgvsc: ENST00000599636.1:c.221G>A
  hgvsp: ENSP00000472837.1:p.Gly74Asp
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000446175
  ensembl transcript: ENST00000544886
  gene symbol: SLC1A6
  hgvsc: ENST00000544886.2:c.208G>A
  hgvsp: ENSP00000446175.1:p.Val70Ile
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000105143
  ensembl transcript: ENST00000596697
  gene symbol: SLC1A6
  hgvsc: ENST00000596697.1:n.2571G>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471781
  ensembl transcript: ENST00000598504
  gene symbol: SLC1A6
  hgvsc: ENST00000598504.1:c.208G>A
  hgvsp: ENSP00000471781.1:p.Val70Ile
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471038
  ensembl transcript: ENST00000600144
  gene symbol: SLC1A6
  hgvsc: ENST00000600144.1:c.208G>A
  hgvsp: ENSP00000471038.1:p.Val70Ile
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000221742
  ensembl transcript: ENST00000221742
  gene symbol: SLC1A6
  hgvsc: ENST00000221742.3:c.208G>A
  hgvsp: ENSP00000221742.3:p.Val70Ile
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000409386
  ensembl transcript: ENST00000430939
  gene symbol: SLC1A6
  hgvsc: ENST00000430939.2:c.221G>A
  hgvsp: ENSP00000409386.2:p.Gly74Asp
  variant of: http://identifiers.org/hgnc/10944
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15939
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5430
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12893
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1870
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8709
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8279
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3260
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Val70Ile
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQ

19-15082697-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15082697
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 15082697
    reference: chr 19
allele count: 1
allele frequency: 8.288849839196314e-6
allele num: 120644
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl transcript: ENST00000596697
  gene symbol: SLC1A6
  hgvsc: ENST00000596697.1:n.2569-11T>C
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000446175
  ensembl transcript: ENST00000544886
  gene symbol: SLC1A6
  hgvsc: ENST00000544886.2:c.206-11T>C
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471562
  ensembl transcript: ENST00000597262
  gene symbol: SLC1A6
  hgvsc: ENST00000597262.1:c.206-11T>C
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000469551
  ensembl transcript: ENST00000595863
  gene symbol: SLC1A6
  hgvsc: ENST00000595863.1:c.206-11T>C
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471781
  ensembl transcript: ENST00000598504
  gene symbol: SLC1A6
  hgvsc: ENST00000598504.1:c.206-11T>C
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000472837
  ensembl transcript: ENST00000599636
  gene symbol: SLC1A6
  hgvsc: ENST00000599636.1:c.219-11T>C
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471038
  ensembl transcript: ENST00000600144
  gene symbol: SLC1A6
  hgvsc: ENST00000600144.1:c.206-11T>C
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000409386
  ensembl transcript: ENST00000430939
  gene symbol: SLC1A6
  hgvsc: ENST00000430939.2:c.219-11T>C
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000221742
  ensembl transcript: ENST00000221742
  gene symbol: SLC1A6
  hgvsc: ENST00000221742.3:c.206-11T>C
  variant of: http://identifiers.org/hgnc/10944
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12787
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8152
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8252
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1870
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5417
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15583
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3263
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 923
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13335
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: QD

19-15082705-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15082705
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 15082705
    reference: chr 19
allele count: 1
allele frequency: 8.303165166561494e-6
allele num: 120436
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000221742
  ensembl transcript: ENST00000221742
  gene symbol: SLC1A6
  hgvsc: ENST00000221742.3:c.206-19C>T
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471038
  ensembl transcript: ENST00000600144
  gene symbol: SLC1A6
  hgvsc: ENST00000600144.1:c.206-19C>T
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471562
  ensembl transcript: ENST00000597262
  gene symbol: SLC1A6
  hgvsc: ENST00000597262.1:c.206-19C>T
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000469551
  ensembl transcript: ENST00000595863
  gene symbol: SLC1A6
  hgvsc: ENST00000595863.1:c.206-19C>T
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000446175
  ensembl transcript: ENST00000544886
  gene symbol: SLC1A6
  hgvsc: ENST00000544886.2:c.206-19C>T
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471781
  ensembl transcript: ENST00000598504
  gene symbol: SLC1A6
  hgvsc: ENST00000598504.1:c.206-19C>T
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl transcript: ENST00000596697
  gene symbol: SLC1A6
  hgvsc: ENST00000596697.1:n.2569-19C>T
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000472837
  ensembl transcript: ENST00000599636
  gene symbol: SLC1A6
  hgvsc: ENST00000599636.1:c.219-19C>T
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000409386
  ensembl transcript: ENST00000430939
  gene symbol: SLC1A6
  hgvsc: ENST00000430939.2:c.219-19C>T
  variant of: http://identifiers.org/hgnc/10944
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1868
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8242
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5420
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1795
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12717
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15164
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7513
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3259
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7271
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2123
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum

19-15082722-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15082722
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 15082722
    reference: chr 19
allele count: 2
allele frequency: 1.666694444907415e-5
allele num: 119998
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000221742
  ensembl transcript: ENST00000221742
  gene symbol: SLC1A6
  hgvsc: ENST00000221742.3:c.206-36A>G
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000409386
  ensembl transcript: ENST00000430939
  gene symbol: SLC1A6
  hgvsc: ENST00000430939.2:c.219-36A>G
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471038
  ensembl transcript: ENST00000600144
  gene symbol: SLC1A6
  hgvsc: ENST00000600144.1:c.206-36A>G
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl transcript: ENST00000596697
  gene symbol: SLC1A6
  hgvsc: ENST00000596697.1:n.2569-36A>G
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000469551
  ensembl transcript: ENST00000595863
  gene symbol: SLC1A6
  hgvsc: ENST00000595863.1:c.206-36A>G
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471562
  ensembl transcript: ENST00000597262
  gene symbol: SLC1A6
  hgvsc: ENST00000597262.1:c.206-36A>G
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000446175
  ensembl transcript: ENST00000544886
  gene symbol: SLC1A6
  hgvsc: ENST00000544886.2:c.206-36A>G
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471781
  ensembl transcript: ENST00000598504
  gene symbol: SLC1A6
  hgvsc: ENST00000598504.1:c.206-36A>G
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000472837
  ensembl transcript: ENST00000599636
  gene symbol: SLC1A6
  hgvsc: ENST00000599636.1:c.219-36A>G
  variant of: http://identifiers.org/hgnc/10944
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3255
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8102
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13101
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3153
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4380
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5479
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5405
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11941
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1867
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1793
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3161
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1172
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3260
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: FS

19-15082725-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15082725
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 15082725
    reference: chr 19
allele count: 2
allele frequency: 1.668390670359371e-5
allele num: 119876
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000469551
  ensembl transcript: ENST00000595863
  gene symbol: SLC1A6
  hgvsc: ENST00000595863.1:c.206-39C>T
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000472837
  ensembl transcript: ENST00000599636
  gene symbol: SLC1A6
  hgvsc: ENST00000599636.1:c.219-39C>T
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000409386
  ensembl transcript: ENST00000430939
  gene symbol: SLC1A6
  hgvsc: ENST00000430939.2:c.219-39C>T
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471781
  ensembl transcript: ENST00000598504
  gene symbol: SLC1A6
  hgvsc: ENST00000598504.1:c.206-39C>T
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000221742
  ensembl transcript: ENST00000221742
  gene symbol: SLC1A6
  hgvsc: ENST00000221742.3:c.206-39C>T
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471562
  ensembl transcript: ENST00000597262
  gene symbol: SLC1A6
  hgvsc: ENST00000597262.1:c.206-39C>T
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000446175
  ensembl transcript: ENST00000544886
  gene symbol: SLC1A6
  hgvsc: ENST00000544886.2:c.206-39C>T
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471038
  ensembl transcript: ENST00000600144
  gene symbol: SLC1A6
  hgvsc: ENST00000600144.1:c.206-39C>T
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl transcript: ENST00000596697
  gene symbol: SLC1A6
  hgvsc: ENST00000596697.1:n.2569-39C>T
  variant of: http://identifiers.org/hgnc/10944
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3254
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5223
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3155
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5694
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12427
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11560
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1867
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8053
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5394
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6484
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 963
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 501
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1241
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD

19-15082727-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15082727
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 15082727
    reference: chr 19
allele count: 4
allele frequency: 3.343978331020415e-5
allele num: 119618
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000409386
  ensembl transcript: ENST00000430939
  gene symbol: SLC1A6
  hgvsc: ENST00000430939.2:c.219-41G>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471562
  ensembl transcript: ENST00000597262
  gene symbol: SLC1A6
  hgvsc: ENST00000597262.1:c.206-41G>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000472837
  ensembl transcript: ENST00000599636
  gene symbol: SLC1A6
  hgvsc: ENST00000599636.1:c.219-41G>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000446175
  ensembl transcript: ENST00000544886
  gene symbol: SLC1A6
  hgvsc: ENST00000544886.2:c.206-41G>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471038
  ensembl transcript: ENST00000600144
  gene symbol: SLC1A6
  hgvsc: ENST00000600144.1:c.206-41G>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl transcript: ENST00000596697
  gene symbol: SLC1A6
  hgvsc: ENST00000596697.1:n.2569-41G>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000469551
  ensembl transcript: ENST00000595863
  gene symbol: SLC1A6
  hgvsc: ENST00000595863.1:c.206-41G>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471781
  ensembl transcript: ENST00000598504
  gene symbol: SLC1A6
  hgvsc: ENST00000598504.1:c.206-41G>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000221742
  ensembl transcript: ENST00000221742
  gene symbol: SLC1A6
  hgvsc: ENST00000221742.3:c.206-41G>A
  variant of: http://identifiers.org/hgnc/10944
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6070
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8016
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5393
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5646
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11343
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3249
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11860
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3149
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1867
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1291
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3195
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1134
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2022
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6324
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum

19-15082728-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15082728
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 15082728
    reference: chr 19
allele count: 1
allele frequency: 8.362882183715796e-6
allele num: 119576
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl transcript: ENST00000596697
  gene symbol: SLC1A6
  hgvsc: ENST00000596697.1:n.2569-42C>T
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471781
  ensembl transcript: ENST00000598504
  gene symbol: SLC1A6
  hgvsc: ENST00000598504.1:c.206-42C>T
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000472837
  ensembl transcript: ENST00000599636
  gene symbol: SLC1A6
  hgvsc: ENST00000599636.1:c.219-42C>T
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000221742
  ensembl transcript: ENST00000221742
  gene symbol: SLC1A6
  hgvsc: ENST00000221742.3:c.206-42C>T
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000446175
  ensembl transcript: ENST00000544886
  gene symbol: SLC1A6
  hgvsc: ENST00000544886.2:c.206-42C>T
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000469551
  ensembl transcript: ENST00000595863
  gene symbol: SLC1A6
  hgvsc: ENST00000595863.1:c.206-42C>T
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471038
  ensembl transcript: ENST00000600144
  gene symbol: SLC1A6
  hgvsc: ENST00000600144.1:c.206-42C>T
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471562
  ensembl transcript: ENST00000597262
  gene symbol: SLC1A6
  hgvsc: ENST00000597262.1:c.206-42C>T
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000409386
  ensembl transcript: ENST00000430939
  gene symbol: SLC1A6
  hgvsc: ENST00000430939.2:c.219-42C>T
  variant of: http://identifiers.org/hgnc/10944
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5391
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3248
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1867
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3181
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11902
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7994
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11242
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5616
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6139
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1298
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6262
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 668
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2287
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12214
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

19-15082731-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15082731
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 15082731
    reference: chr 19
allele count: 4
allele frequency: 3.35795836131632e-5
allele num: 119120
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471562
  ensembl transcript: ENST00000597262
  gene symbol: SLC1A6
  hgvsc: ENST00000597262.1:c.206-45G>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471038
  ensembl transcript: ENST00000600144
  gene symbol: SLC1A6
  hgvsc: ENST00000600144.1:c.206-45G>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000409386
  ensembl transcript: ENST00000430939
  gene symbol: SLC1A6
  hgvsc: ENST00000430939.2:c.219-45G>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000469551
  ensembl transcript: ENST00000595863
  gene symbol: SLC1A6
  hgvsc: ENST00000595863.1:c.206-45G>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000446175
  ensembl transcript: ENST00000544886
  gene symbol: SLC1A6
  hgvsc: ENST00000544886.2:c.206-45G>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471781
  ensembl transcript: ENST00000598504
  gene symbol: SLC1A6
  hgvsc: ENST00000598504.1:c.206-45G>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000221742
  ensembl transcript: ENST00000221742
  gene symbol: SLC1A6
  hgvsc: ENST00000221742.3:c.206-45G>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl transcript: ENST00000596697
  gene symbol: SLC1A6
  hgvsc: ENST00000596697.1:n.2569-45G>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000472837
  ensembl transcript: ENST00000599636
  gene symbol: SLC1A6
  hgvsc: ENST00000599636.1:c.219-45G>A
  variant of: http://identifiers.org/hgnc/10944
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10692
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3245
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7932
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7934
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10678
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3122
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5611
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1867
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5374
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4084
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3056
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2225
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4631
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: Other
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum

19-15082732-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15082732
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 15082732
    reference: chr 19
allele count: 13
allele frequency: 1.089233347297863e-4
allele num: 119350
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000469551
  ensembl transcript: ENST00000595863
  gene symbol: SLC1A6
  hgvsc: ENST00000595863.1:c.206-46T>C
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471781
  ensembl transcript: ENST00000598504
  gene symbol: SLC1A6
  hgvsc: ENST00000598504.1:c.206-46T>C
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000446175
  ensembl transcript: ENST00000544886
  gene symbol: SLC1A6
  hgvsc: ENST00000544886.2:c.206-46T>C
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000472837
  ensembl transcript: ENST00000599636
  gene symbol: SLC1A6
  hgvsc: ENST00000599636.1:c.219-46T>C
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000221742
  ensembl transcript: ENST00000221742
  gene symbol: SLC1A6
  hgvsc: ENST00000221742.3:c.206-46T>C
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl transcript: ENST00000596697
  gene symbol: SLC1A6
  hgvsc: ENST00000596697.1:n.2569-46T>C
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000409386
  ensembl transcript: ENST00000430939
  gene symbol: SLC1A6
  hgvsc: ENST00000430939.2:c.219-46T>C
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471038
  ensembl transcript: ENST00000600144
  gene symbol: SLC1A6
  hgvsc: ENST00000600144.1:c.206-46T>C
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471562
  ensembl transcript: ENST00000597262
  gene symbol: SLC1A6
  hgvsc: ENST00000597262.1:c.206-46T>C
  variant of: http://identifiers.org/hgnc/10944
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10703
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3246
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3144
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8013
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5367
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7927
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1866
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10597
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5581
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 706
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2244
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3053
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2590
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum

19-15082732-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15082732
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 15082732
    reference: chr 19
allele count: 2
allele frequency: 1.675743611227482e-5
allele num: 119350
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471562
  ensembl transcript: ENST00000597262
  gene symbol: SLC1A6
  hgvsc: ENST00000597262.1:c.206-46T>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471781
  ensembl transcript: ENST00000598504
  gene symbol: SLC1A6
  hgvsc: ENST00000598504.1:c.206-46T>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000446175
  ensembl transcript: ENST00000544886
  gene symbol: SLC1A6
  hgvsc: ENST00000544886.2:c.206-46T>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000409386
  ensembl transcript: ENST00000430939
  gene symbol: SLC1A6
  hgvsc: ENST00000430939.2:c.219-46T>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471038
  ensembl transcript: ENST00000600144
  gene symbol: SLC1A6
  hgvsc: ENST00000600144.1:c.206-46T>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000472837
  ensembl transcript: ENST00000599636
  gene symbol: SLC1A6
  hgvsc: ENST00000599636.1:c.219-46T>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000469551
  ensembl transcript: ENST00000595863
  gene symbol: SLC1A6
  hgvsc: ENST00000595863.1:c.206-46T>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl transcript: ENST00000596697
  gene symbol: SLC1A6
  hgvsc: ENST00000596697.1:n.2569-46T>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000221742
  ensembl transcript: ENST00000221742
  gene symbol: SLC1A6
  hgvsc: ENST00000221742.3:c.206-46T>A
  variant of: http://identifiers.org/hgnc/10944
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3246
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8013
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10597
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10703
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1866
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5367
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5581
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7927
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3144
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2244
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2144
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1503
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3053
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2590
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4640
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: A
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

19-15082733-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15082733
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 15082733
    reference: chr 19
allele count: 1
allele frequency: 8.384056877441857e-6
allele num: 119274
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000469551
  ensembl transcript: ENST00000595863
  gene symbol: SLC1A6
  hgvsc: ENST00000595863.1:c.206-47C>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000472837
  ensembl transcript: ENST00000599636
  gene symbol: SLC1A6
  hgvsc: ENST00000599636.1:c.219-47C>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000446175
  ensembl transcript: ENST00000544886
  gene symbol: SLC1A6
  hgvsc: ENST00000544886.2:c.206-47C>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471781
  ensembl transcript: ENST00000598504
  gene symbol: SLC1A6
  hgvsc: ENST00000598504.1:c.206-47C>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl transcript: ENST00000596697
  gene symbol: SLC1A6
  hgvsc: ENST00000596697.1:n.2569-47C>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000409386
  ensembl transcript: ENST00000430939
  gene symbol: SLC1A6
  hgvsc: ENST00000430939.2:c.219-47C>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471038
  ensembl transcript: ENST00000600144
  gene symbol: SLC1A6
  hgvsc: ENST00000600144.1:c.206-47C>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000221742
  ensembl transcript: ENST00000221742
  gene symbol: SLC1A6
  hgvsc: ENST00000221742.3:c.206-47C>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471562
  ensembl transcript: ENST00000597262
  gene symbol: SLC1A6
  hgvsc: ENST00000597262.1:c.206-47C>A
  variant of: http://identifiers.org/hgnc/10944
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5369
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7918
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5572
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10733
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1866
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3148
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8066
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3245
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10523
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2230
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1529
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2647
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4088
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD

19-15082735-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15082735
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 15082735
    reference: chr 19
allele count: 1
allele frequency: 8.393063971933595e-6
allele num: 119146
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471781
  ensembl transcript: ENST00000598504
  gene symbol: SLC1A6
  hgvsc: ENST00000598504.1:c.206-49G>C
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000221742
  ensembl transcript: ENST00000221742
  gene symbol: SLC1A6
  hgvsc: ENST00000221742.3:c.206-49G>C
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000409386
  ensembl transcript: ENST00000430939
  gene symbol: SLC1A6
  hgvsc: ENST00000430939.2:c.219-49G>C
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl transcript: ENST00000596697
  gene symbol: SLC1A6
  hgvsc: ENST00000596697.1:n.2569-49G>C
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000446175
  ensembl transcript: ENST00000544886
  gene symbol: SLC1A6
  hgvsc: ENST00000544886.2:c.206-49G>C
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471562
  ensembl transcript: ENST00000597262
  gene symbol: SLC1A6
  hgvsc: ENST00000597262.1:c.206-49G>C
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000469551
  ensembl transcript: ENST00000595863
  gene symbol: SLC1A6
  hgvsc: ENST00000595863.1:c.206-49G>C
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471038
  ensembl transcript: ENST00000600144
  gene symbol: SLC1A6
  hgvsc: ENST00000600144.1:c.206-49G>C
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000472837
  ensembl transcript: ENST00000599636
  gene symbol: SLC1A6
  hgvsc: ENST00000599636.1:c.219-49G>C
  variant of: http://identifiers.org/hgnc/10944
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10678
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5553
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7901
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1866
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8239
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3147
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5368
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3244
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10430
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2454
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5500
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2812
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3005
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2109
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4618
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD

19-15083452-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15083452
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 15083452
    reference: chr 19
allele count: 1
allele frequency: 9.608547764090935e-6
allele num: 104074
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000446175
  ensembl transcript: ENST00000544886
  gene symbol: SLC1A6
  hgvsc: ENST00000544886.2:c.205+66C>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000469551
  ensembl transcript: ENST00000595863
  gene symbol: SLC1A6
  hgvsc: ENST00000595863.1:c.205+66C>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000409386
  ensembl transcript: ENST00000430939
  gene symbol: SLC1A6
  hgvsc: ENST00000430939.2:c.218+66C>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471038
  ensembl transcript: ENST00000600144
  gene symbol: SLC1A6
  hgvsc: ENST00000600144.1:c.205+66C>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471781
  ensembl transcript: ENST00000598504
  gene symbol: SLC1A6
  hgvsc: ENST00000598504.1:c.205+66C>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl transcript: ENST00000596697
  gene symbol: SLC1A6
  hgvsc: ENST00000596697.1:n.2568+66C>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000472837
  ensembl transcript: ENST00000599636
  gene symbol: SLC1A6
  hgvsc: ENST00000599636.1:c.218+66C>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000221742
  ensembl transcript: ENST00000221742
  gene symbol: SLC1A6
  hgvsc: ENST00000221742.3:c.205+66C>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471562
  ensembl transcript: ENST00000597262
  gene symbol: SLC1A6
  hgvsc: ENST00000597262.1:c.205+66C>A
  variant of: http://identifiers.org/hgnc/10944
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12067
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1945
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1384
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15696
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6463
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14923
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6753
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5973
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 733
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3397
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1161
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6425
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6181
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ

http://identifiers.org/exac.variant/19-15083453-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15083453
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 15083453
    reference: chr 19
allele count: 1
allele frequency: 9.620194712740986e-6
allele num: 103948
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471781
  ensembl transcript: ENST00000598504
  gene symbol: SLC1A6
  hgvsc: ENST00000598504.1:c.205+65G>T
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471562
  ensembl transcript: ENST00000597262
  gene symbol: SLC1A6
  hgvsc: ENST00000597262.1:c.205+65G>T
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471038
  ensembl transcript: ENST00000600144
  gene symbol: SLC1A6
  hgvsc: ENST00000600144.1:c.205+65G>T
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000472837
  ensembl transcript: ENST00000599636
  gene symbol: SLC1A6
  hgvsc: ENST00000599636.1:c.218+65G>T
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000409386
  ensembl transcript: ENST00000430939
  gene symbol: SLC1A6
  hgvsc: ENST00000430939.2:c.218+65G>T
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000221742
  ensembl transcript: ENST00000221742
  gene symbol: SLC1A6
  hgvsc: ENST00000221742.3:c.205+65G>T
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000446175
  ensembl transcript: ENST00000544886
  gene symbol: SLC1A6
  hgvsc: ENST00000544886.2:c.205+65G>T
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl transcript: ENST00000596697
  gene symbol: SLC1A6
  hgvsc: ENST00000596697.1:n.2568+65G>T
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000469551
  ensembl transcript: ENST00000595863
  gene symbol: SLC1A6
  hgvsc: ENST00000595863.1:c.205+65G>T
  variant of: http://identifiers.org/hgnc/10944
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15147
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6507
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14895
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12607
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1954
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6727
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1314
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1618
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6051
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1201
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: DP

19-15083459-ATTTCCCTGAAGTCCCCGCC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15083459
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 15083440
    reference: chr 19
allele count: 6
allele frequency: 5.722024070647924e-5
allele num: 104858
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000469551
  ensembl transcript: ENST00000595863
  gene symbol: SLC1A6
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000472837
  ensembl transcript: ENST00000599636
  gene symbol: SLC1A6
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471562
  ensembl transcript: ENST00000597262
  gene symbol: SLC1A6
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000409386
  ensembl transcript: ENST00000430939
  gene symbol: SLC1A6
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000221742
  ensembl transcript: ENST00000221742
  gene symbol: SLC1A6
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000446175
  ensembl transcript: ENST00000544886
  gene symbol: SLC1A6
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471781
  ensembl transcript: ENST00000598504
  gene symbol: SLC1A6
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471038
  ensembl transcript: ENST00000600144
  gene symbol: SLC1A6
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl transcript: ENST00000596697
  gene symbol: SLC1A6
  variant of: http://identifiers.org/hgnc/10944
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 17824
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1311
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6954
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2050
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9977
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6638
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14466
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6805
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1163
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6119
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 715
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1564
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4095
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5970
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Other
population: Latino
reference allele: ATTTCCCTGAAGTCCCCGCC
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum

19-15083472-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15083472
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 15083472
    reference: chr 19
allele count: 1
allele frequency: 9.417082587814295e-6
allele num: 106190
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000446175
  ensembl transcript: ENST00000544886
  gene symbol: SLC1A6
  hgvsc: ENST00000544886.2:c.205+46G>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471562
  ensembl transcript: ENST00000597262
  gene symbol: SLC1A6
  hgvsc: ENST00000597262.1:c.205+46G>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471781
  ensembl transcript: ENST00000598504
  gene symbol: SLC1A6
  hgvsc: ENST00000598504.1:c.205+46G>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000409386
  ensembl transcript: ENST00000430939
  gene symbol: SLC1A6
  hgvsc: ENST00000430939.2:c.218+46G>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471038
  ensembl transcript: ENST00000600144
  gene symbol: SLC1A6
  hgvsc: ENST00000600144.1:c.205+46G>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl transcript: ENST00000596697
  gene symbol: SLC1A6
  hgvsc: ENST00000596697.1:n.2568+46G>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000469551
  ensembl transcript: ENST00000595863
  gene symbol: SLC1A6
  hgvsc: ENST00000595863.1:c.205+46G>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000221742
  ensembl transcript: ENST00000221742
  gene symbol: SLC1A6
  hgvsc: ENST00000221742.3:c.205+46G>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000472837
  ensembl transcript: ENST00000599636
  gene symbol: SLC1A6
  hgvsc: ENST00000599636.1:c.218+46G>A
  variant of: http://identifiers.org/hgnc/10944
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8987
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26633
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2464
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6222
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10066
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3797
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4446
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4205
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1191
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: MQ

19-15083482-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15083482
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 15083482
    reference: chr 19
allele count: 1
allele frequency: 9.113444152814232e-6
allele num: 109728
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471781
  ensembl transcript: ENST00000598504
  gene symbol: SLC1A6
  hgvsc: ENST00000598504.1:c.205+36G>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000446175
  ensembl transcript: ENST00000544886
  gene symbol: SLC1A6
  hgvsc: ENST00000544886.2:c.205+36G>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000472837
  ensembl transcript: ENST00000599636
  gene symbol: SLC1A6
  hgvsc: ENST00000599636.1:c.218+36G>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl transcript: ENST00000596697
  gene symbol: SLC1A6
  hgvsc: ENST00000596697.1:n.2568+36G>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471562
  ensembl transcript: ENST00000597262
  gene symbol: SLC1A6
  hgvsc: ENST00000597262.1:c.205+36G>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471038
  ensembl transcript: ENST00000600144
  gene symbol: SLC1A6
  hgvsc: ENST00000600144.1:c.205+36G>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000469551
  ensembl transcript: ENST00000595863
  gene symbol: SLC1A6
  hgvsc: ENST00000595863.1:c.205+36G>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000221742
  ensembl transcript: ENST00000221742
  gene symbol: SLC1A6
  hgvsc: ENST00000221742.3:c.205+36G>A
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000409386
  ensembl transcript: ENST00000430939
  gene symbol: SLC1A6
  hgvsc: ENST00000430939.2:c.218+36G>A
  variant of: http://identifiers.org/hgnc/10944
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11032
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4860
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32918
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4910
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1496
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3088
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1513
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34437
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5094
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5250
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: East Asian
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ

19-15083484-C-CCGAAG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15083484
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 15083489
    reference: chr 19
allele count: 1
allele frequency: 9.059283954196261e-6
allele num: 110384
alternate allele: CCGAAG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000409386
  ensembl transcript: ENST00000430939
  gene symbol: SLC1A6
  hgvsc: ENST00000430939.2:c.218+33_218+34insCTTCG
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000469551
  ensembl transcript: ENST00000595863
  gene symbol: SLC1A6
  hgvsc: ENST00000595863.1:c.205+33_205+34insCTTCG
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000221742
  ensembl transcript: ENST00000221742
  gene symbol: SLC1A6
  hgvsc: ENST00000221742.3:c.205+33_205+34insCTTCG
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471562
  ensembl transcript: ENST00000597262
  gene symbol: SLC1A6
  hgvsc: ENST00000597262.1:c.205+33_205+34insCTTCG
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl transcript: ENST00000596697
  gene symbol: SLC1A6
  hgvsc: ENST00000596697.1:n.2568+33_2568+34insCTTCG
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471038
  ensembl transcript: ENST00000600144
  gene symbol: SLC1A6
  hgvsc: ENST00000600144.1:c.205+33_205+34insCTTCG
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000446175
  ensembl transcript: ENST00000544886
  gene symbol: SLC1A6
  hgvsc: ENST00000544886.2:c.205+33_205+34insCTTCG
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471781
  ensembl transcript: ENST00000598504
  gene symbol: SLC1A6
  hgvsc: ENST00000598504.1:c.205+33_205+34insCTTCG
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000472837
  ensembl transcript: ENST00000599636
  gene symbol: SLC1A6
  hgvsc: ENST00000599636.1:c.218+33_218+34insCTTCG
  variant of: http://identifiers.org/hgnc/10944
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4575
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1295
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3245
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33460
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11471
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4281
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4825
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 478
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1261
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1192
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 581
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum

19-15083485-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15083485
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 15083485
    reference: chr 19
allele count: 35851
allele frequency: 3.156620353249864e-1
allele num: 113574
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000471781
  ensembl transcript: ENST00000598504
  gene symbol: SLC1A6
  hgvsc: ENST00000598504.1:c.205+33A>G
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000409386
  ensembl transcript: ENST00000430939
  gene symbol: SLC1A6
  hgvsc: ENST00000430939.2:c.218+33A>G
  variant of: http://identifiers.org/hgnc/10944
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105143
  ensembl protein: ENSP00000469551
  ensembl transcript: ENST00000595863
  gene symbol: SLC1A6
  hgvsc: ENST00000595863.1:c.205+33A>G
  variant of: http://identifiers.org/hgnc/10944
canonical: true
consequence: intron
filter: PASS
num of homozygotes: 5583
reference allele: T

GenotypeQuality
all individuals: 420
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1320
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3949
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1126
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 798
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 648
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1087
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 559
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9812
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8402
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15276
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.194556822361162e-5
allele num: 10876
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64094
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 8.949999999999999e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.437e0

DP
type: SiteQuality
SIO_000300: 1.364162e6

MQ
type: SiteQuality
SIO_000300: 5.699e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -3.02e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.44e0

MQRankSum
type: SiteQuality
SIO_000300: -1.091e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.62e-1

GenotypeQuality
all individuals: 1284
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 941
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3985
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1161
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4459
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1126
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 41305
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 639
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 417
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.557875058420315e-5
allele num: 64190
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15300
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5590
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10884
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8414
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.08e0

MQRankSum
type: SiteQuality
SIO_000300: 1.04e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.6e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.11e-1

FS
type: SiteQuality
SIO_000300: 5.792e0

MQ
type: SiteQuality
SIO_000300: 5.67e1

VQSLOD
type: SiteQuality
SIO_000300: -1.315e0

QD
type: SiteQuality
SIO_000300: 1.012e1

DP
type: SiteQuality
SIO_000300: 1.365551e6

GenotypeQuality
all individuals: 959
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1154
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3968
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4370
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41945
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1196
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 804
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 418
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 914
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64182
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.019160211985324e-4
allele num: 9812
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8414
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15300
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.189487226612754e-5
allele num: 10882
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 5.26e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -3.66e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.66e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.79e-1

DP
type: SiteQuality
SIO_000300: 1.371231e6

QD
type: SiteQuality
SIO_000300: 1.574e1

GenotypeQuality
all individuals: 899
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 42749
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 765
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 542
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 843
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1125
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1019
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 780
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15368
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10948
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9860
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8464
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.551782998665467e-5
allele num: 64442
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.031e0

QD
type: SiteQuality
SIO_000300: 3.72e0

DP
type: SiteQuality
SIO_000300: 1.379427e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.24e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.88e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.82e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.622e0

VQSLOD
type: SiteQuality
SIO_000300: -1.923e0

GenotypeQuality
all individuals: 18
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 810
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 552
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 779
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1107
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1124
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4550
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 415
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64426
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9854
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8464
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10936
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5610
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.503642039542144e-5
allele num: 15376
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.776e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.56e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQ
type: SiteQuality
SIO_000300: 5.947e1

VQSLOD
type: SiteQuality
SIO_000300: -5.368000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.378573e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.82e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.51e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.34e-1

FS
type: SiteQuality
SIO_000300: 1.421e0

GenotypeQuality
all individuals: 1093
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 215
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1164
bin: 9.75e1
variant carriers: 47

GenotypeQuality
all individuals: 885
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 733
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1169
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41510
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 415
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 10
allele frequency: 9.164222873900294e-4
allele num: 10912
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.210653753026634e-3
allele num: 826
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5548
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 34
allele frequency: 5.288700846192135e-4
allele num: 64288
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.524008350730688e-5
allele num: 15328
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8448
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.019991840065279e-4
allele num: 9804
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.6e-2

DP
type: SiteQuality
SIO_000300: 1.379521e6

VQSLOD
type: SiteQuality
SIO_000300: 5.1e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.9e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.86e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.216e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.58e-1

GenotypeQuality
all individuals: 41544
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 462
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1147
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 906
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 749
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1129
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 1040
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 633
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8458
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 1.555355087566491e-4
allele num: 64294
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9812
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15312
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10912
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5548
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.374694e6

MQRankSum
type: SiteQuality
SIO_000300: 1.16e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.76e0

FS
type: SiteQuality
SIO_000300: 1.741e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.67e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.11e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.7e-1

QD
type: SiteQuality
SIO_000300: 1.229e1

GenotypeQuality
all individuals: 5095
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3775
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1198
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1199
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1168
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1309
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 891
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 405
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8448
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9786
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10870
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.558263471187709e-5
allele num: 64174
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15268
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.2e0

MQRankSum
type: SiteQuality
SIO_000300: 7.17e-1

DP
type: SiteQuality
SIO_000300: 1.369016e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.5567e1

QD
type: SiteQuality
SIO_000300: 6.69e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 4.66e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.156e0

VQSLOD
type: SiteQuality
SIO_000300: -3.093e0

GenotypeQuality
all individuals: 676
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1198
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1168
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 575
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1121
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 735
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 891
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10870
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.549646319098769e-5
allele num: 15268
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8448
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64174
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9786
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.093e0

MQRankSum
type: SiteQuality
SIO_000300: 7.17e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.156e0

DP
type: SiteQuality
SIO_000300: 1.369016e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.2e0

FS
type: SiteQuality
SIO_000300: 1.5567e1

QD
type: SiteQuality
SIO_000300: 6.69e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.66e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

GenotypeQuality
all individuals: 64
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5318
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 640
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3746
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 874
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1157
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41208
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1115
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1119
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 161
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1099
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5474
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9764
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64080
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10874
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.55307994757536e-5
allele num: 15260
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8426
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.16e-1

QD
type: SiteQuality
SIO_000300: 8.57e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.69e0

DP
type: SiteQuality
SIO_000300: 1.365026e6

VQSLOD
type: SiteQuality
SIO_000300: 2.34e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.74e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.04e-1

GenotypeQuality
all individuals: 475
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 610
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41362
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1110
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 406
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 741
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1010
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 871
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1119
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 979
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9746
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15232
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8410
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63998
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.836884643644379e-4
allele num: 5444
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10856
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 6.84e0

VQSLOD
type: SiteQuality
SIO_000300: -6.885e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.41e-1

DP
type: SiteQuality
SIO_000300: 1.362076e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.36e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1486
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 530
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 772
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1118
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1107
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 385
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6629
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 994
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39743
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3559
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 798
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9594
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8322
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.363295880149813e-5
allele num: 10680
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63288
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15060
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5320
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

DP
type: SiteQuality
SIO_000300: 1.346622e6

ClippingRankSum
type: SiteQuality
SIO_000300: 7.54e-1

QD
type: SiteQuality
SIO_000300: 2.44e0

MQRankSum
type: SiteQuality
SIO_000300: 7.18e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.81e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.558e0

GenotypeQuality
all individuals: 998
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 383
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1034
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39052
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 524
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1643
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1130
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6812
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1118
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 122
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 705
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8310
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10668
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.044713748432929e-4
allele num: 9572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5302
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15026
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63170
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 796
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.3e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.795e0

MQRankSum
type: SiteQuality
SIO_000300: -4.72e-1

FS
type: SiteQuality
SIO_000300: 7.06e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

DP
type: SiteQuality
SIO_000300: 1.344349e6

VQSLOD
type: SiteQuality
SIO_000300: -1.493e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.858e0

QD
type: SiteQuality
SIO_000300: 8.06e0

GenotypeQuality
all individuals: 40216
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1118
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 112
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1175
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 511
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1142
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 947
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3493
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 635
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 797
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14996
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63044
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10636
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8300
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5268
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.046682018002931e-4
allele num: 9554
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.321e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.07e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.63e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.03e0

MQ
type: SiteQuality
SIO_000300: 5.682e1

VQSLOD
type: SiteQuality
SIO_000300: -7.745e-1

DP
type: SiteQuality
SIO_000300: 1.344287e6

GenotypeQuality
all individuals: 736
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 693
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7328
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 412
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1040
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40872
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 686
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1118
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 775
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3443
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.592407401509602e-5
allele num: 62798
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8278
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.45179584120983e-5
allele num: 10580
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14926
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5204
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.28e-1

QD
type: SiteQuality
SIO_000300: 1.259e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 5.36e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.56e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.29e-1

FS
type: SiteQuality
SIO_000300: 5.976e0

VQSLOD
type: SiteQuality
SIO_000300: 1.61e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

DP
type: SiteQuality
SIO_000300: 1.341206e6

GenotypeQuality
all individuals: 153
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3404
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 383
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7506
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 666
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 870
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1120
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 40720
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 744
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 478
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5170
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8268
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10546
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9486
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.195092338168573e-5
allele num: 62596
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.713211600429645e-5
allele num: 14896
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.71e-1

FS
type: SiteQuality
SIO_000300: 2.151e0

VQSLOD
type: SiteQuality
SIO_000300: 7.06e-1

DP
type: SiteQuality
SIO_000300: 1.339772e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.04e-1

MQ
type: SiteQuality
SIO_000300: 5.938e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.932e0

QD
type: SiteQuality
SIO_000300: 1.133e1

GenotypeQuality
all individuals: 39
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 688
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 933
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 480
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3073
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9696
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1195
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 911
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 605
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8146
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4986
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10246
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9298
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 776
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.381024720342494e-4
allele num: 14482
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.628081143564195e-5
allele num: 61422
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.302286e6

ClippingRankSum
type: SiteQuality
SIO_000300: 8.2e-2

MQRankSum
type: SiteQuality
SIO_000300: -2.56e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

MQ
type: SiteQuality
SIO_000300: 5.936e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.65e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.65e-1

QD
type: SiteQuality
SIO_000300: 1.009e1

FS
type: SiteQuality
SIO_000300: 2.028e0

VQSLOD
type: SiteQuality
SIO_000300: 1.48e0

GenotypeQuality
all individuals: 362
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 575
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10465
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 44
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 37991
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 671
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2993
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 446
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1182
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.083423618634886e-4
allele num: 9230
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 770
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8090
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.639183031177261e-5
allele num: 61006
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10178
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14396
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4894
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.5e-2

QD
type: SiteQuality
SIO_000300: 1.116e1

FS
type: SiteQuality
SIO_000300: 2.514e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.291513e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.46e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.3e0

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.17e-1

GenotypeQuality
all individuals: 1378
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37991
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 858
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 446
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2993
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10465
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 406
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 671
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 575
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 834
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14396
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8090
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.083423618634886e-4
allele num: 9230
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10178
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 770
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.278366062354523e-5
allele num: 61006
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.5e-2

FS
type: SiteQuality
SIO_000300: 2.514e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.17e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.3e0

QD
type: SiteQuality
SIO_000300: 1.116e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.46e-1

DP
type: SiteQuality
SIO_000300: 1.291513e6

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

GenotypeQuality
all individuals: 1287
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 608
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 882
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1027
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 360
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 999
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2902
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36272
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 556
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1115
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 147
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.652455548945733e-5
allele num: 60516
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4848
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 762
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8038
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14256
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9160
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10054
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.99e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.69e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.51e-1

DP
type: SiteQuality
SIO_000300: 1.273671e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.16e0

FS
type: SiteQuality
SIO_000300: 7.384e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

QD
type: SiteQuality
SIO_000300: 1.15e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 2822
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 903
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1500
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36777
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11640
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 551
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 352
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 644
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 528
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 568
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 756
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4822
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8016
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14208
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60348
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9140
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10024
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.707e0

DP
type: SiteQuality
SIO_000300: 1.269918e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 6.98e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.182e0

MQRankSum
type: SiteQuality
SIO_000300: 1.03e0

QD
type: SiteQuality
SIO_000300: 5.54e0

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 77
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 378
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35932
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 802
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 625
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1117
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 544
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1342
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 582
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2790
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12051
bin: 2.25e1
variant carriers: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.124946876328092e-4
allele num: 14118
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60078
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9980
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4796
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7980
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9104
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 756
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 6.58e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -3.957e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.27e-1

DP
type: SiteQuality
SIO_000300: 1.262234e6

MQRankSum
type: SiteQuality
SIO_000300: 3.28e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.92e0

GenotypeQuality
all individuals: 924
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 479
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16214
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 512
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1789
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 497
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 367
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2120
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2202
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 363
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 1.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7682
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9416
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.136621959536258e-4
allele num: 8798
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4546
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13398
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 1.905421791096484e-4
allele num: 57730
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 718
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.49e-1

DP
type: SiteQuality
SIO_000300: 1.188068e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.146e0

VQSLOD
type: SiteQuality
SIO_000300: 1.71e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 6.900000000000001e-2

FS
type: SiteQuality
SIO_000300: 1.969e0

QD
type: SiteQuality
SIO_000300: 1.304e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.58e-1

GenotypeQuality
all individuals: 470
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 504
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2190
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 452
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 672
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1889
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1114
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 30774
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17135
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 339
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7608
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4474
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8738
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13288
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9354
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 710
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.744774400669994e-5
allele num: 57314
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.659e0

QD
type: SiteQuality
SIO_000300: 1.347e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.94e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.7e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.170995e6

BaseQRankSum
type: SiteQuality
SIO_000300: -8.8e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.56e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.19e-1

GenotypeQuality
all individuals: 131
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 504
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 249
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1037
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 478
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9551
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1108
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 433
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10736
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3580
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 616
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.273236567354214e-4
allele num: 7854
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 49946
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.2e-3

DP
type: SiteQuality
SIO_000300: 8.72838e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.16e0

MQRankSum
type: SiteQuality
SIO_000300: -8.49e-1

QD
type: SiteQuality
SIO_000300: 1.574e1

VQSLOD
type: SiteQuality
SIO_000300: -9.497e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.62e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.0e0

GenotypeQuality
all individuals: 294
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5680
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6844
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30774
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5208
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 815
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1106
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 128
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 263
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.111843216759588e-5
allele num: 47352
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7304
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3276
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6124
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.021450459652707e-4
allele num: 9790
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7258
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.87e-1

QD
type: SiteQuality
SIO_000300: 9.220000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.54e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.25e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.4e-3

DP
type: SiteQuality
SIO_000300: 8.17909e5

FS
type: SiteQuality
SIO_000300: 4.392e0

MQRankSum
type: SiteQuality
SIO_000300: -3.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.51e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 2320
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4042
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 671
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 362
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4785
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 504
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 482
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.356831151393085e-4
allele num: 5958
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9166
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7056
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6994
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 536
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3134
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45792
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.038e1

MQRankSum
type: SiteQuality
SIO_000300: 1.35e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.67e0

FS
type: SiteQuality
SIO_000300: 1.713e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.06e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.141e0

DP
type: SiteQuality
SIO_000300: 7.88024e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.35e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 198
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4017
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 318
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 472
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5538
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 190
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1105
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2259
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7068
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7100
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3134
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9160
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.338206585397596e-5
allele num: 46102
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5974
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 548
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.599999999999999e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 7.82912e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.157e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.16e0

VQSLOD
type: SiteQuality
SIO_000300: -3.217e0

QD
type: SiteQuality
SIO_000300: 3.5e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.898e0

GenotypeQuality
all individuals: 5208
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5828
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 532
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29649
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3525
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 263
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2478
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1103
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 63
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5648
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6790
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8392
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.27541640120142e-5
allele num: 43948
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2894
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.32e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.3e-2

QD
type: SiteQuality
SIO_000300: 1.018e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.17e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.64e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.52e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.227e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 7.45596e5

GenotypeQuality
all individuals: 5726
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 789
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 812
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5142
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 6850
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 979
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1126
bin: 9.75e1
variant carriers: 29

GenotypeQuality
all individuals: 289
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 274
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 128
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 190
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 25
allele frequency: 4.298486932599725e-3
allele num: 5816
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4454
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.953125e-4
allele num: 5120
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 4.694835680751174e-3
allele num: 426
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.494505494505495e-5
allele num: 36400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2206
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6240
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.85e-1

QD
type: SiteQuality
SIO_000300: 1.304e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.8e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.12e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.82e-2

DP
type: SiteQuality
SIO_000300: 6.85573e5

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.67e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

GenotypeQuality
all individuals: 6540
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5413
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5133
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 816
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7221
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1217
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 797
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6220
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2204
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 420
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5088
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5776
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 9.021199819576004e-4
allele num: 4434
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36212
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.83e-1

QD
type: SiteQuality
SIO_000300: 7.72e0

VQSLOD
type: SiteQuality
SIO_000300: 2.1e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.25e-1

DP
type: SiteQuality
SIO_000300: 6.84007e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.89e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.625e0

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

GenotypeQuality
all individuals: 416
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 504
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 548
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3190
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4225
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2135
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17601
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13374
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 807
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 800
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.425083526085839e-5
allele num: 15564
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

Latino
type: Population
allele count: 7
allele frequency: 6.067961165048543e-4
allele num: 11536
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66180
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.229e1

MQRankSum
type: SiteQuality
SIO_000300: 2.58e-1

FS
type: SiteQuality
SIO_000300: 3.207e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.412e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.54e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 9.48e-1

DP
type: SiteQuality
SIO_000300: 2.021952e6

GenotypeQuality
all individuals: 3423
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 530
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13364
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 792
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4222
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7291
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3186
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2133
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 480
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 780
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509753004408479e-5
allele num: 66236
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.733102253032929e-4
allele num: 11540
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.391409945033875e-5
allele num: 15646
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -3.074e0

DP
type: SiteQuality
SIO_000300: 2.023374e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.12e-1

FS
type: SiteQuality
SIO_000300: 3.15e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.65e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.27e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.98e-1

QD
type: SiteQuality
SIO_000300: 3.238e1

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 839
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4227
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 656
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2133
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 710
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7340
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.121076233183856e-3
allele num: 892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66252
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15696
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 2.2e0

VQSLOD
type: SiteQuality
SIO_000300: 6.49e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.12e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.409999999999999e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.233e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.832e0

DP
type: SiteQuality
SIO_000300: 2.028252e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e0

GenotypeQuality
all individuals: 789
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 447
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13363
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 245
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2131
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4221
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3438
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66284
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15772
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.661008141347653e-5
allele num: 11546
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.41e-1

QD
type: SiteQuality
SIO_000300: 1.593e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.93e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.96e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.44e-1

FS
type: SiteQuality
SIO_000300: 2.521e0

MQRankSum
type: SiteQuality
SIO_000300: 7.66e-1

DP
type: SiteQuality
SIO_000300: 2.03338e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

MQ
type: SiteQuality
SIO_000300: 5.952e1

GenotypeQuality
all individuals: 3438
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3184
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18825
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 447
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 526
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13363
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2131
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7376
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15772
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.471418653089562e-4
allele num: 8642
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66284
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

DP
type: SiteQuality
SIO_000300: 2.03338e6

ClippingRankSum
type: SiteQuality
SIO_000300: 6.41e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.66e-1

MQ
type: SiteQuality
SIO_000300: 5.952e1

QD
type: SiteQuality
SIO_000300: 1.593e1

FS
type: SiteQuality
SIO_000300: 2.521e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.93e-1

GenotypeQuality
all individuals: 4222
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2130
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7378
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3439
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 432
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13359
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 22
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 584
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3186
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.659508139937652e-5
allele num: 11548
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15792
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66292
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.37e-1

MQ
type: SiteQuality
SIO_000300: 5.948e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.576e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.23e0

DP
type: SiteQuality
SIO_000300: 2.034646e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.54e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.88e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 2.126e1

GenotypeQuality
all individuals: 144
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7450
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3447
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 429
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13357
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4980
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4230
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15922
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507204437209863e-5
allele num: 66348
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.041648e6

FS
type: SiteQuality
SIO_000300: 3.884e0

MQRankSum
type: SiteQuality
SIO_000300: 5.25e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.24e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.51e-1

QD
type: SiteQuality
SIO_000300: 1.31e1

VQSLOD
type: SiteQuality
SIO_000300: 4.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.28e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 23
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 594
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13361
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 7457
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19653
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4965
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 300
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4225
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.134010279553717e-4
allele num: 15954
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66378
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.84e-1

DP
type: SiteQuality
SIO_000300: 2.045395e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

MQ
type: SiteQuality
SIO_000300: 5.893e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.873e0

MQRankSum
type: SiteQuality
SIO_000300: 9.2e-2

QD
type: SiteQuality
SIO_000300: 1.162e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.76e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.47e-2

GenotypeQuality
all individuals: 157
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4977
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 421
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3465
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2130
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13357
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 238
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4229
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.195786864931847e-5
allele num: 16140
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66464
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -2.462e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.988e0

MQRankSum
type: SiteQuality
SIO_000300: 3.54e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.317e0

QD
type: SiteQuality
SIO_000300: 9.69e0

FS
type: SiteQuality
SIO_000300: 1.4489e1

DP
type: SiteQuality
SIO_000300: 2.053265e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.85e0

MQ
type: SiteQuality
SIO_000300: 5.955e1

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2131
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4984
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3490
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4232
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21632
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13358
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7605
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500015000150001e-5
allele num: 66666
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.4e0

QD
type: SiteQuality
SIO_000300: 1.166e1

MQ
type: SiteQuality
SIO_000300: 5.979e1

VQSLOD
type: SiteQuality
SIO_000300: 1.77e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.01e0

DP
type: SiteQuality
SIO_000300: 2.068139e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.75e-1

FS
type: SiteQuality
SIO_000300: 1.878e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.1e-1

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13357
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3181
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21685
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7605
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3493
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2129
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4977
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499205421126803e-5
allele num: 66702
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.97e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.1e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.14e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.04e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.9e-1

QD
type: SiteQuality
SIO_000300: 1.467e1

FS
type: SiteQuality
SIO_000300: 3.57e0

DP
type: SiteQuality
SIO_000300: 2.068786e6

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21692
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7605
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3181
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4978
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66710
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.523e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.7e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.119e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.69e0

MQ
type: SiteQuality
SIO_000300: 5.978e1

QD
type: SiteQuality
SIO_000300: 1.67e1

DP
type: SiteQuality
SIO_000300: 2.068904e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 4.014e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.632e0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4233
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21685
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3180
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7603
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4977
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3491
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.99805126667666e-5
allele num: 66710
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.09e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.8e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 3.99e-1

DP
type: SiteQuality
SIO_000300: 2.068805e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.97e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.05e-1

QD
type: SiteQuality
SIO_000300: 1.129e1

MQ
type: SiteQuality
SIO_000300: 5.966e1

VQSLOD
type: SiteQuality
SIO_000300: 2.38e0

GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4233
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3180
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2130
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21684
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13354
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3490
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4975
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.615384615384615e-5
allele num: 10400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66710
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.65e0

QD
type: SiteQuality
SIO_000300: 1.473e1

MQ
type: SiteQuality
SIO_000300: 5.968e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

DP
type: SiteQuality
SIO_000300: 2.068783e6

FS
type: SiteQuality
SIO_000300: 9.68e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.12e0

MQRankSum
type: SiteQuality
SIO_000300: 3.25e-1

GenotypeQuality
all individuals: 4230
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3180
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2129
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4973
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7584
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3482
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21632
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 8.997660608241857e-5
allele num: 66684
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 4.65e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.04e-1

FS
type: SiteQuality
SIO_000300: 9.385999999999999e0

VQSLOD
type: SiteQuality
SIO_000300: 7.5e-2

DP
type: SiteQuality
SIO_000300: 2.067994e6

MQRankSum
type: SiteQuality
SIO_000300: -3.9e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.79e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.09e-1

MQ
type: SiteQuality
SIO_000300: 5.966e1

GenotypeQuality
all individuals: 19
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2130
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3179
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21613
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7582
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3479
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4965
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13369
bin: 9.75e1
variant carriers: 27

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66684
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Latino
type: Population
allele count: 27
allele frequency: 2.332814930015552e-3
allele num: 11574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.06909e6

MQRankSum
type: SiteQuality
SIO_000300: 2.84e-1

MQ
type: SiteQuality
SIO_000300: 5.961e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.23e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 4.45e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.605e0

QD
type: SiteQuality
SIO_000300: 1.269e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.81e-1

GenotypeQuality
all individuals: 2131
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4962
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4225
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3477
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7590
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21609
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3179
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13344
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66678
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.45e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.17e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.966e1

DP
type: SiteQuality
SIO_000300: 2.067569e6

MQRankSum
type: SiteQuality
SIO_000300: -3.7e-2

FS
type: SiteQuality
SIO_000300: 5.610000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.5e-1

QD
type: SiteQuality
SIO_000300: 1.198e1

VQSLOD
type: SiteQuality
SIO_000300: 1.79e0

GenotypeQuality
all individuals: 23
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3477
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3179
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7590
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13344
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2131
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21609
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.499235130027895e-5
allele num: 66678
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.966e1

FS
type: SiteQuality
SIO_000300: 5.610000000000001e-1

DP
type: SiteQuality
SIO_000300: 2.067569e6

VQSLOD
type: SiteQuality
SIO_000300: 1.79e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.17e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.198e1

MQRankSum
type: SiteQuality
SIO_000300: -3.7e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.45e-1

GenotypeQuality
all individuals: 21571
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4961
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4222
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3476
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2131
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3179
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.640055296353897e-5
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.999760019198464e-5
allele num: 66672
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.63e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.45e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.26e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.959e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.964e0

QD
type: SiteQuality
SIO_000300: 1.423e1

DP
type: SiteQuality
SIO_000300: 2.06712e6

FS
type: SiteQuality
SIO_000300: 1.214e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.71e-1

GenotypeQuality
all individuals: 18
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4222
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7585
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13343
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3476
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2131
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3179
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21571
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66672
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.059871530723549e-5
allele num: 16502
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.214e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.45e-1

DP
type: SiteQuality
SIO_000300: 2.06712e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.964e0

VQSLOD
type: SiteQuality
SIO_000300: 1.63e0

QD
type: SiteQuality
SIO_000300: 1.423e1

MQRankSum
type: SiteQuality
SIO_000300: 6.26e-1

MQ
type: SiteQuality
SIO_000300: 5.959e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.71e-1

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2131
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3475
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4224
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13340
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 13
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7580
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3178
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21589
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66660
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.059871530723549e-5
allele num: 16502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.97e1

MQRankSum
type: SiteQuality
SIO_000300: -1.81e-1

QD
type: SiteQuality
SIO_000300: 1.189e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.58e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.31e0

DP
type: SiteQuality
SIO_000300: 2.066617e6

FS
type: SiteQuality
SIO_000300: 8.9e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.649999999999999e-1

GenotypeQuality
all individuals: 151
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7496
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4212
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3176
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20745
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4931
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 477
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13338
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 169
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3448
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2127
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.511549566891241e-5
allele num: 66496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.512401693889897e-4
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16356
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.41e0

VQSLOD
type: SiteQuality
SIO_000300: 6.63e-1

QD
type: SiteQuality
SIO_000300: 1.343e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.52e-1

FS
type: SiteQuality
SIO_000300: 6.43e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.28e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -9.77e-1

DP
type: SiteQuality
SIO_000300: 2.057914e6

MQ
type: SiteQuality
SIO_000300: 5.917e1

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3176
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 331
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2124
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 397
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3406
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19865
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7375
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4200
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4916
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16244
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10350
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506614035616356e-5
allele num: 66374
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.667e0

MQRankSum
type: SiteQuality
SIO_000300: 9.78e-1

MQ
type: SiteQuality
SIO_000300: 5.953e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.582e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.38e0

VQSLOD
type: SiteQuality
SIO_000300: -1.001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

DP
type: SiteQuality
SIO_000300: 2.044802e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.17e0

QD
type: SiteQuality
SIO_000300: 1.959e1

GenotypeQuality
all individuals: 4188
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 539
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4896
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1299
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 464
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3171
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18703
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 668
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3381
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13330
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16182
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10334
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508705229172324e-5
allele num: 66282
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.199999999999999e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.306e0

MQ
type: SiteQuality
SIO_000300: 5.93e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.71e0

QD
type: SiteQuality
SIO_000300: 1.454e1

DP
type: SiteQuality
SIO_000300: 2.031653e6

VQSLOD
type: SiteQuality
SIO_000300: -1.444e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.25e0

GenotypeQuality
all individuals: 4160
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14103
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4829
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 408
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2024
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 785
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2116
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6648
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13322
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1815
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 746
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.2482836100362e-4
allele num: 16022
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66114
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10292
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 5.33e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.78e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.73e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.2e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.67e-1

QD
type: SiteQuality
SIO_000300: 1.22e1

DP
type: SiteQuality
SIO_000300: 1.977715e6

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 1088
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2072
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1991
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13320
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4810
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3230
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3154
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4158
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2113
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2044
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12980
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15978
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10280
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.026909222992402e-5
allele num: 66074
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8550
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.607e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.6e-3

QD
type: SiteQuality
SIO_000300: 1.454e1

DP
type: SiteQuality
SIO_000300: 1.96504e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 4.82e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.97e0

GenotypeQuality
all individuals: 92
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1424
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2254
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11948
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4791
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2110
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4141
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13320
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 674
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2081
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3148
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.74089226573154e-5
allele num: 10266
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8538
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.031589159037167e-5
allele num: 65972
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.302785831337451e-5
allele num: 15866
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.7e-2

QD
type: SiteQuality
SIO_000300: 1.46e1

DP
type: SiteQuality
SIO_000300: 1.956591e6

VQSLOD
type: SiteQuality
SIO_000300: 3.22e0

MQ
type: SiteQuality
SIO_000300: 5.959e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.4e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 4.26e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

FS
type: SiteQuality
SIO_000300: 9.51e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.1e-1

GenotypeQuality
all individuals: 4733
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1432
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2046
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3154
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2089
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1156
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 296
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13311
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3144
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4119
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2105
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.516576177621402e-5
allele num: 65938
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10248
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15892
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.8e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.88e0

QD
type: SiteQuality
SIO_000300: 1.464e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.24e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.032e0

DP
type: SiteQuality
SIO_000300: 1.955001e6

GenotypeQuality
all individuals: 142
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8683
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2106
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 358
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13307
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 2676
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5590
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1339
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1821
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2571
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1062
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1516
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2201
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3143
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15650
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65798
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.483713638738896e-4
allele num: 11482
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10234
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.28e-1

QD
type: SiteQuality
SIO_000300: 1.329e1

VQSLOD
type: SiteQuality
SIO_000300: 1.65e0

DP
type: SiteQuality
SIO_000300: 1.939828e6

FS
type: SiteQuality
SIO_000300: 1.699e0

MQRankSum
type: SiteQuality
SIO_000300: -5.47e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -4.143e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.26e-1

GenotypeQuality
all individuals: 116
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4091
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1360
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1865
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1503
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3145
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5611
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9112
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2108
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13318
bin: 9.75e1
variant carriers: 13

GenotypeQuality
all individuals: 2144
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4640
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2655
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15756
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.950838860710105e-4
allele num: 10252
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11488
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 1.669449081803005e-4
allele num: 65890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e-1

DP
type: SiteQuality
SIO_000300: 1.938692e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

QD
type: SiteQuality
SIO_000300: 1.238e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.01e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.98e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.38e0

MQRankSum
type: SiteQuality
SIO_000300: -1.15e-1

GenotypeQuality
all individuals: 19
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4091
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1360
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5611
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 706
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2108
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2655
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1865
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3145
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9112
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13318
bin: 9.75e1
variant carriers: 2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11488
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.269357705001269e-4
allele num: 15756
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65890
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10252
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.938692e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.15e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.98e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.38e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.01e-1

QD
type: SiteQuality
SIO_000300: 1.238e1

GenotypeQuality
all individuals: 3145
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2575
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5570
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1354
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3042
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4630
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9382
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13308
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 532
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2096
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1877
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2109
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11474
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15746
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65848
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8510
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.765625000000001e-5
allele num: 10240
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.19e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.66e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.02e0

DP
type: SiteQuality
SIO_000300: 1.937967e6

MQRankSum
type: SiteQuality
SIO_000300: -1.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

QD
type: SiteQuality
SIO_000300: 1.036e1

GenotypeQuality
all individuals: 329
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4085
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 573
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8896
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1833
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3146
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1543
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13309
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1343
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2249
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2566
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8500
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10234
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.719916288803627e-5
allele num: 11468
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15678
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65812
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.126e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.8e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.71e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.996e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.85e-1

DP
type: SiteQuality
SIO_000300: 1.936452e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

QD
type: SiteQuality
SIO_000300: 2.002e1

GenotypeQuality
all individuals: 1271
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6026
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4929
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10854
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1173
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3285
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3397
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 285
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1279
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1136
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1646
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 381
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 784
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8208
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7732
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6074
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12662
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.337068160597572e-5
allele num: 10710
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57908
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 780
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.1e-1

DP
type: SiteQuality
SIO_000300: 1.072089e6

ClippingRankSum
type: SiteQuality
SIO_000300: 6.76e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.098e0

MQRankSum
type: SiteQuality
SIO_000300: 1.42e0

QD
type: SiteQuality
SIO_000300: 1.195e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.6e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 789
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1171
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1257
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 745
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5914
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6417
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3415
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4580
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11217
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 381
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3286
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3385
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6138
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1123
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8176
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7728
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12592
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10718
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 782
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6062
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.727414061150458e-5
allele num: 57890
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.4e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.33e-1

QD
type: SiteQuality
SIO_000300: 1.457e1

VQSLOD
type: SiteQuality
SIO_000300: 9.14e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.21e-1

DP
type: SiteQuality
SIO_000300: 1.075058e6

GenotypeQuality
all individuals: 3569
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1174
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 369
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 592
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1166
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18101
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2925
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 789
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1299
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3356
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.427122245450496e-5
allele num: 58358
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12738
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7816
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6098
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 4.839099927413501e-4
allele num: 8266
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 788
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10794
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -7.634e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.241e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.02e-1

FS
type: SiteQuality
SIO_000300: 5.39e-1

QD
type: SiteQuality
SIO_000300: 1.74e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.96e-1

DP
type: SiteQuality
SIO_000300: 1.107566e6

MQ
type: SiteQuality
SIO_000300: 5.299e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.0e-1

GenotypeQuality
all individuals: 1374
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1033
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 26410
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1389
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6591
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 430
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 339
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 915
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1385
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2746
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1526
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 910
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3522
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1285
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.696237744682295e-5
allele num: 58954
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7948
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8408
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13054
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6130
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.26e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.97e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.763e0

VQSLOD
type: SiteQuality
SIO_000300: -1.303e0

QD
type: SiteQuality
SIO_000300: 1.63e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.4e-3

DP
type: SiteQuality
SIO_000300: 1.207953e6

FS
type: SiteQuality
SIO_000300: 1.1083e1

MQRankSum
type: SiteQuality
SIO_000300: 1.15e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 669
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1925
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 812
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1683
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 542
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2164
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 553
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1174
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1397
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 520
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1251
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 427
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 669
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.649130908011478e-5
allele num: 60638
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14006
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6270
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8660
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11114
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8222
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.754e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.74e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

DP
type: SiteQuality
SIO_000300: 1.313421e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.74e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e0

FS
type: SiteQuality
SIO_000300: 5.142e0

VQSLOD
type: SiteQuality
SIO_000300: -2.486e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 781
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1863
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1742
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1262
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 429
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 473
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2022
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5433
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35708
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1331
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 452
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8696
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14216
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.641443156823479e-5
allele num: 60922
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8268
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6308
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11152
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 822
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.76e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.35e-1

MQ
type: SiteQuality
SIO_000300: 5.875e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.5e0

QD
type: SiteQuality
SIO_000300: 9.27e0

DP
type: SiteQuality
SIO_000300: 1.32983e6

FS
type: SiteQuality
SIO_000300: 2.341e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

MQRankSum
type: SiteQuality
SIO_000300: -5.6e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.64e-1