19-42410705-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42410705
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42410705
    reference: chr 19
allele count: 13
allele frequency: 1.115860671919795e-4
allele num: 116502
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.2588G>T
  hgvsp: ENSP00000346532.2:p.Ser863Ile
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.2921G>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.2489G>T
  hgvsp: ENSP00000344429.3:p.Ser830Ile
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000469735
  ensembl transcript: ENST00000599589
  gene symbol: ARHGEF1
  hgvsc: ENST00000599589.1:c.1765-150G>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.2756G>T
  hgvsp: ENSP00000470715.1:p.Ser919Ile
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000472466
  ensembl transcript: ENST00000595723
  gene symbol: ARHGEF1
  hgvsc: ENST00000595723.1:c.864G>T
  hgvsp: ENSP00000472466.1:p.Ser289Ile
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.2438-150G>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.2633G>T
  hgvsp: ENSP00000337261.3:p.Ser878Ile
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000595897
  gene symbol: ARHGEF1
  hgvsc: ENST00000595897.1:n.2455G>T
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 33606
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16918
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2856
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2008
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2740
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 831
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 841
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3526
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ser878Ile
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

19-42410710-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42410710
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42410710
    reference: chr 19
allele count: 1
allele frequency: 8.595200440074262e-6
allele num: 116344
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.2593G>T
  hgvsp: ENSP00000346532.2:p.Ala865Ser
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.2438-145G>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000595897
  gene symbol: ARHGEF1
  hgvsc: ENST00000595897.1:n.2460G>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.2638G>T
  hgvsp: ENSP00000337261.3:p.Ala880Ser
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.2494G>T
  hgvsp: ENSP00000344429.3:p.Ala832Ser
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.2761G>T
  hgvsp: ENSP00000470715.1:p.Ala921Ser
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000472466
  ensembl transcript: ENST00000595723
  gene symbol: ARHGEF1
  hgvsc: ENST00000595723.1:c.869G>T
  hgvsp: ENSP00000472466.1:p.Ala291Ser
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000469735
  ensembl transcript: ENST00000599589
  gene symbol: ARHGEF1
  hgvsc: ENST00000599589.1:c.1765-145G>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.2926G>T
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16911
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33357
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2088
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2712
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3092
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1338
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 892
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5028
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala880Ser
num of homozygotes: 0
population: Latino
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

19-42410713-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42410713
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42410713
    reference: chr 19
allele count: 1
allele frequency: 8.613264427217915e-6
allele num: 116100
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.2438-142C>G
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: incomplete_terminal_codon_variant
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000472466
  ensembl transcript: ENST00000595723
  gene symbol: ARHGEF1
  hgvsc: ENST00000595723.1:c.872C>G
  hgvsp: ENST00000595723.1:c.872C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.2929C>G
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.2764C>G
  hgvsp: ENSP00000470715.1:p.Arg922Gly
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000469735
  ensembl transcript: ENST00000599589
  gene symbol: ARHGEF1
  hgvsc: ENST00000599589.1:c.1765-142C>G
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.2497C>G
  hgvsp: ENSP00000344429.3:p.Arg833Gly
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000595897
  gene symbol: ARHGEF1
  hgvsc: ENST00000595897.1:n.2463C>G
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.2641C>G
  hgvsp: ENSP00000337261.3:p.Arg881Gly
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.2596C>G
  hgvsp: ENSP00000346532.2:p.Arg866Gly
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3365
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32974
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2181
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16761
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2720
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 764
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 414
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg881Gly
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

19-42410713-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42410713
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42410713
    reference: chr 19
allele count: 4
allele frequency: 3.445305770887166e-5
allele num: 116100
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: incomplete_terminal_codon_variant
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000472466
  ensembl transcript: ENST00000595723
  gene symbol: ARHGEF1
  hgvsc: ENST00000595723.1:c.872C>T
  hgvsp: ENST00000595723.1:c.872C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.2596C>T
  hgvsp: ENSP00000346532.2:p.Arg866Trp
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000469735
  ensembl transcript: ENST00000599589
  gene symbol: ARHGEF1
  hgvsc: ENST00000599589.1:c.1765-142C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.2641C>T
  hgvsp: ENSP00000337261.3:p.Arg881Trp
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.2497C>T
  hgvsp: ENSP00000344429.3:p.Arg833Trp
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.2764C>T
  hgvsp: ENSP00000470715.1:p.Arg922Trp
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.2438-142C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000595897
  gene symbol: ARHGEF1
  hgvsc: ENST00000595897.1:n.2463C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.2929C>T
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32974
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2720
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16761
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3365
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2181
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 952
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg881Trp
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum

19-42410714-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42410714
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42410714
    reference: chr 19
allele count: 3
allele frequency: 2.585582790360947e-5
allele num: 116028
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.2930G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000469735
  ensembl transcript: ENST00000599589
  gene symbol: ARHGEF1
  hgvsc: ENST00000599589.1:c.1765-141G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.2642G>A
  hgvsp: ENSP00000337261.3:p.Arg881Gln
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.2438-141G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000595897
  gene symbol: ARHGEF1
  hgvsc: ENST00000595897.1:n.2464G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.2597G>A
  hgvsp: ENSP00000346532.2:p.Arg866Gln
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.2498G>A
  hgvsp: ENSP00000344429.3:p.Arg833Gln
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.2765G>A
  hgvsp: ENSP00000470715.1:p.Arg922Gln
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2194
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32857
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2723
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3454
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16762
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 763
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 959
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1007
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 9.75e1
  variant carriers: 3
hgvs: p.Arg881Gln
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS

19-42410718-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42410718
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42410718
    reference: chr 19
allele count: 1
allele frequency: 8.664009703690868e-6
allele num: 115420
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000595897
  gene symbol: ARHGEF1
  hgvsc: ENST00000595897.1:n.2468C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.2934C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.2438-137C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.2646C>T
  hgvsp: ENST00000337665.4:c.2646C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000469735
  ensembl transcript: ENST00000599589
  gene symbol: ARHGEF1
  hgvsc: ENST00000599589.1:c.1765-137C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.2601C>T
  hgvsp: ENST00000354532.3:c.2601C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.2502C>T
  hgvsp: ENST00000347545.4:c.2502C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.2769C>T
  hgvsp: ENST00000599846.1:c.2769C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4466
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1960
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16517
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2469
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31358
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2684
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1098
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 579
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4704
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41289
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Thr882Thr
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum

19-42410719-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42410719
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42410719
    reference: chr 19
allele count: 1
allele frequency: 8.664159836420662e-6
allele num: 115418
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000469735
  ensembl transcript: ENST00000599589
  gene symbol: ARHGEF1
  hgvsc: ENST00000599589.1:c.1765-136C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.2602C>T
  hgvsp: ENSP00000346532.2:p.Gln868Ter
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.2935C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.2770C>T
  hgvsp: ENSP00000470715.1:p.Gln924Ter
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.2438-136C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.2503C>T
  hgvsp: ENSP00000344429.3:p.Gln835Ter
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.2647C>T
  hgvsp: ENSP00000337261.3:p.Gln883Ter
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000595897
  gene symbol: ARHGEF1
  hgvsc: ENST00000595897.1:n.2469C>T
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2483
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16494
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4463
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1937
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31448
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2630
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 323
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1272
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4869
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 812
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gln883Ter
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP

19-42410731-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42410731
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42410731
    reference: chr 19
allele count: 1
allele frequency: 8.722502311463112e-6
allele num: 114646
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.2659G>A
  hgvsp: ENSP00000337261.3:p.Glu887Lys
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000595897
  gene symbol: ARHGEF1
  hgvsc: ENST00000595897.1:n.2481G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.2782G>A
  hgvsp: ENSP00000470715.1:p.Glu928Lys
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.2947G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.2515G>A
  hgvsp: ENSP00000344429.3:p.Glu839Lys
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.2614G>A
  hgvsp: ENSP00000346532.2:p.Glu872Lys
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000469735
  ensembl transcript: ENST00000599589
  gene symbol: ARHGEF1
  hgvsc: ENST00000599589.1:c.1765-124G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.2438-124G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000593609
  gene symbol: ARHGEF1
  hgvsc: ENST00000593609.1:n.4G>A
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15903
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2831
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2488
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29723
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5995
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2498
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1708
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 699
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 596
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6079
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 966
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Glu887Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: African
population: Latino
reference allele: G
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff

19-42410752-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42410752
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42410752
    reference: chr 19
allele count: 1
allele frequency: 8.877525656049147e-6
allele num: 112644
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000593609
  gene symbol: ARHGEF1
  hgvsc: ENST00000593609.1:n.25G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.2680G>A
  hgvsp: ENSP00000337261.3:p.Glu894Lys
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000595897
  gene symbol: ARHGEF1
  hgvsc: ENST00000595897.1:n.2502G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.2803G>A
  hgvsp: ENSP00000470715.1:p.Glu935Lys
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.2536G>A
  hgvsp: ENSP00000344429.3:p.Glu846Lys
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.2635G>A
  hgvsp: ENSP00000346532.2:p.Glu879Lys
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.2968G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000469735
  ensembl transcript: ENST00000599589
  gene symbol: ARHGEF1
  hgvsc: ENST00000599589.1:c.1765-103G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.2438-103G>A
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23564
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3609
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2124
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13411
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10625
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5973
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3325
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 816
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 657
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Glu894Lys
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: Other
reference allele: G
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

19-42410766-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42410766
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42410766
    reference: chr 19
allele count: 1
allele frequency: 9.016969937422229e-6
allele num: 110902
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.2649G>T
  hgvsp: ENSP00000346532.2:p.Gln883His
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.2694G>T
  hgvsp: ENSP00000337261.3:p.Gln898His
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.2817G>T
  hgvsp: ENSP00000470715.1:p.Gln939His
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.2438-89G>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000593609
  gene symbol: ARHGEF1
  hgvsc: ENST00000593609.1:n.39G>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000469735
  ensembl transcript: ENST00000599589
  gene symbol: ARHGEF1
  hgvsc: ENST00000599589.1:c.1765-89G>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.2550G>T
  hgvsp: ENSP00000344429.3:p.Gln850His
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000595897
  gene symbol: ARHGEF1
  hgvsc: ENST00000595897.1:n.2516G>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.2982G>T
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4170
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11517
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12518
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19349
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9665
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1911
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 730
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3233
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Gln898His
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
population: African
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

19-42410776-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42410776
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42410776
    reference: chr 19
allele count: 1
allele frequency: 9.203187984317769e-6
allele num: 108658
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000469735
  ensembl transcript: ENST00000599589
  gene symbol: ARHGEF1
  hgvsc: ENST00000599589.1:c.1765-79G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000595897
  gene symbol: ARHGEF1
  hgvsc: ENST00000595897.1:n.2522+4G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.2988+4G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000593609
  gene symbol: ARHGEF1
  hgvsc: ENST00000593609.1:n.49G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.2823+4G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.2438-79G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.2655+4G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.2556+4G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.2700+4G>A
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16545
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12835
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13076
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9993
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4750
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1796
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 618
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1193
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2141
  bin: 4.25e1
  variant carriers: 0
hgvs: c.2700+4G>A
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: DP
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

19-42410779-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42410779
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42410779
    reference: chr 19
allele count: 3
allele frequency: 2.776954976303317e-5
allele num: 108032
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.2556+7C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.2655+7C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.2823+7C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000593609
  gene symbol: ARHGEF1
  hgvsc: ENST00000593609.1:n.52C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.2438-76C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.2700+7C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000595897
  gene symbol: ARHGEF1
  hgvsc: ENST00000595897.1:n.2522+7C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.2988+7C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000469735
  ensembl transcript: ENST00000599589
  gene symbol: ARHGEF1
  hgvsc: ENST00000599589.1:c.1765-76C>T
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16632
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13103
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4814
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12831
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9887
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2137
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10408
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1187
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1128
  bin: 1.75e1
  variant carriers: 0
hgvs: c.2700+7C>T
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

19-42410780-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42410780
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42410780
    reference: chr 19
allele count: 3
allele frequency: 2.763448784082535e-5
allele num: 108560
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000595897
  gene symbol: ARHGEF1
  hgvsc: ENST00000595897.1:n.2522+8G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000593609
  gene symbol: ARHGEF1
  hgvsc: ENST00000593609.1:n.53G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.2438-75G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.2655+8G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.2700+8G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.2988+8G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.2823+8G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000469735
  ensembl transcript: ENST00000599589
  gene symbol: ARHGEF1
  hgvsc: ENST00000599589.1:c.1765-75G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.2556+8G>A
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16809
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10000
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13097
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12554
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1710
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4832
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2455
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20837
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10842
  bin: 2.25e1
  variant carriers: 0
hgvs: c.2700+8G>A
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: G
site quality: DP
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

19-42410780-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42410780
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42410780
    reference: chr 19
allele count: 2
allele frequency: 1.842299189388357e-5
allele num: 108560
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.2438-75G>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.2556+8G>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.2655+8G>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000595897
  gene symbol: ARHGEF1
  hgvsc: ENST00000595897.1:n.2522+8G>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.2988+8G>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.2700+8G>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000469735
  ensembl transcript: ENST00000599589
  gene symbol: ARHGEF1
  hgvsc: ENST00000599589.1:c.1765-75G>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.2823+8G>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000593609
  gene symbol: ARHGEF1
  hgvsc: ENST00000593609.1:n.53G>T
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16809
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13097
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4832
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1710
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12554
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10000
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1151
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20837
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 7.75e1
  variant carriers: 0
hgvs: c.2700+8G>T
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

19-42410784-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42410784
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42410784
    reference: chr 19
allele count: 3
allele frequency: 2.776132662126147e-5
allele num: 108064
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000469735
  ensembl transcript: ENST00000599589
  gene symbol: ARHGEF1
  hgvsc: ENST00000599589.1:c.1765-71C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.2988+12C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.2700+12C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000595897
  gene symbol: ARHGEF1
  hgvsc: ENST00000595897.1:n.2522+12C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.2556+12C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.2438-71C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000593609
  gene symbol: ARHGEF1
  hgvsc: ENST00000593609.1:n.57C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.2655+12C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.2823+12C>T
  variant of: http://identifiers.org/hgnc/681
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12794
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16918
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13096
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9589
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5009
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1604
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5083
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 773
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 582
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 634
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6145
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum

19-42410785-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42410785
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42410785
    reference: chr 19
allele count: 1
allele frequency: 9.239923863027369e-6
allele num: 108226
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.2556+13G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000469735
  ensembl transcript: ENST00000599589
  gene symbol: ARHGEF1
  hgvsc: ENST00000599589.1:c.1765-70G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.2700+13G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.2438-70G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000595897
  gene symbol: ARHGEF1
  hgvsc: ENST00000595897.1:n.2522+13G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.2823+13G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.2655+13G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000593609
  gene symbol: ARHGEF1
  hgvsc: ENST00000593609.1:n.58G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.2988+13G>A
  variant of: http://identifiers.org/hgnc/681
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12674
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17114
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1571
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5056
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13094
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9515
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5066
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4775
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 583
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1157
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1340
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum

http://identifiers.org/exac.variant/19-42410789-CA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42410789
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42410788
    reference: chr 19
allele count: 1
allele frequency: 9.231905465288035e-6
allele num: 108320
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.2655+18delA
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.2823+18delA
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000469735
  ensembl transcript: ENST00000599589
  gene symbol: ARHGEF1
  hgvsc: ENST00000599589.1:c.1765-65delA
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.2556+18delA
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000593609
  gene symbol: ARHGEF1
  hgvsc: ENST00000593609.1:n.63delA
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000595897
  gene symbol: ARHGEF1
  hgvsc: ENST00000595897.1:n.2522+18delA
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.2438-65delA
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.2988+18delA
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.2700+18delA
  variant of: http://identifiers.org/hgnc/681
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12316
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9222
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1499
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5119
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17814
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13064
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2381
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1941
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 515
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6047
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
reference allele: CA
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQ

19-42410790-A-AG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42410790
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42410791
    reference: chr 19
allele count: 1
allele frequency: 9.228156952493447e-6
allele num: 108364
alternate allele: AG
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.2988+22dupG
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000593609
  gene symbol: ARHGEF1
  hgvsc: ENST00000593609.1:n.67dupG
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.2823+22dupG
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.2655+22dupG
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.2700+22dupG
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.2438-61dupG
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000595897
  gene symbol: ARHGEF1
  hgvsc: ENST00000595897.1:n.2522+22dupG
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.2556+22dupG
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000469735
  ensembl transcript: ENST00000599589
  gene symbol: ARHGEF1
  hgvsc: ENST00000599589.1:c.1765-61dupG
  variant of: http://identifiers.org/hgnc/681
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9298
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11997
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1487
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5109
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18119
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13043
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4943
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11018
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22723
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 546
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1059
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: Other
reference allele: A
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD

19-42410794-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42410794
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42410794
    reference: chr 19
allele count: 2
allele frequency: 1.845699520118125e-5
allele num: 108360
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.2823+22G>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.2655+22G>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.2988+22G>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000469735
  ensembl transcript: ENST00000599589
  gene symbol: ARHGEF1
  hgvsc: ENST00000599589.1:c.1765-61G>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.2438-61G>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000593609
  gene symbol: ARHGEF1
  hgvsc: ENST00000593609.1:n.67G>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000595897
  gene symbol: ARHGEF1
  hgvsc: ENST00000595897.1:n.2522+22G>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.2700+22G>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.2556+22G>T
  variant of: http://identifiers.org/hgnc/681
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5253
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12181
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8869
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12896
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1445
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18458
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1015
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10877
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4995
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1926
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD

19-42410796-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42410796
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42410796
    reference: chr 19
allele count: 3
allele frequency: 2.775156796358994e-5
allele num: 108102
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.2988+24G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.2438-59G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.2823+24G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.2700+24G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000469735
  ensembl transcript: ENST00000599589
  gene symbol: ARHGEF1
  hgvsc: ENST00000599589.1:c.1765-59G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000595897
  gene symbol: ARHGEF1
  hgvsc: ENST00000595897.1:n.2522+24G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.2556+24G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000593609
  gene symbol: ARHGEF1
  hgvsc: ENST00000593609.1:n.69G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.2655+24G>A
  variant of: http://identifiers.org/hgnc/681
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18668
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12849
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5218
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11951
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1440
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8992
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1505
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21552
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2387
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum

19-42410823-G-GC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42410823
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42410824
    reference: chr 19
allele count: 5
allele frequency: 4.503855300136918e-5
allele num: 111016
alternate allele: GC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.2656-26dupC
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.2557-26dupC
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.2701-26dupC
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000593609
  gene symbol: ARHGEF1
  hgvsc: ENST00000593609.1:n.102dupC
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.2824-26dupC
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.2438-26dupC
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000595897
  gene symbol: ARHGEF1
  hgvsc: ENST00000595897.1:n.2523-26dupC
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000469735
  ensembl transcript: ENST00000599589
  gene symbol: ARHGEF1
  hgvsc: ENST00000599589.1:c.1765-26dupC
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.2989-26dupC
  variant of: http://identifiers.org/hgnc/681
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7885
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4284
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28269
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5250
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1923
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11912
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2832
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7788
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 646
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 982
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP

19-42410823-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42410823
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42410823
    reference: chr 19
allele count: 1
allele frequency: 9.007710600273834e-6
allele num: 111016
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.2656-32G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.2824-32G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000595897
  gene symbol: ARHGEF1
  hgvsc: ENST00000595897.1:n.2523-32G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000593609
  gene symbol: ARHGEF1
  hgvsc: ENST00000593609.1:n.96G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.2989-32G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.2438-32G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.2557-32G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000469735
  ensembl transcript: ENST00000599589
  gene symbol: ARHGEF1
  hgvsc: ENST00000599589.1:c.1765-32G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.2701-32G>A
  variant of: http://identifiers.org/hgnc/681
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5250
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28269
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1923
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7885
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4284
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11912
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1108
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3369
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 982
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7788
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: FS
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

19-42410824-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42410824
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42410824
    reference: chr 19
allele count: 1
allele frequency: 9.03995660820828e-6
allele num: 110620
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000595897
  gene symbol: ARHGEF1
  hgvsc: ENST00000595897.1:n.2523-31C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.2989-31C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.2824-31C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.2557-31C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.2701-31C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000469735
  ensembl transcript: ENST00000599589
  gene symbol: ARHGEF1
  hgvsc: ENST00000599589.1:c.1765-31C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000593609
  gene symbol: ARHGEF1
  hgvsc: ENST00000593609.1:n.97C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.2656-31C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.2438-31C>T
  variant of: http://identifiers.org/hgnc/681
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7685
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5275
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28013
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2027
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4142
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12332
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 552
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2309
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1320
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2822
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD

19-42410831-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42410831
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42410831
    reference: chr 19
allele count: 1
allele frequency: 8.747834910859562e-6
allele num: 114314
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000595897
  gene symbol: ARHGEF1
  hgvsc: ENST00000595897.1:n.2523-24C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000469735
  ensembl transcript: ENST00000599589
  gene symbol: ARHGEF1
  hgvsc: ENST00000599589.1:c.1765-24C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.2989-24C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.2824-24C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.2557-24C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.2701-24C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000593609
  gene symbol: ARHGEF1
  hgvsc: ENST00000593609.1:n.104C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.2438-24C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.2656-24C>T
  variant of: http://identifiers.org/hgnc/681
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2660
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14217
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3147
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4461
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2137
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33069
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1207
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: BaseQRankSum

http://identifiers.org/exac.variant/19-42410834-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42410834
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42410834
    reference: chr 19
allele count: 1
allele frequency: 8.685833405715278e-6
allele num: 115130
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.2557-21C>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.2824-21C>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.2438-21C>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.2989-21C>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000593609
  gene symbol: ARHGEF1
  hgvsc: ENST00000593609.1:n.107C>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000595897
  gene symbol: ARHGEF1
  hgvsc: ENST00000595897.1:n.2523-21C>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000469735
  ensembl transcript: ENST00000599589
  gene symbol: ARHGEF1
  hgvsc: ENST00000599589.1:c.1765-21C>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.2701-21C>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.2656-21C>A
  variant of: http://identifiers.org/hgnc/681
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 14683
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2145
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34522
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3452
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2801
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2118
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 961
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: East Asian
population: European (Finnish)
reference allele: C
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum

19-42410841-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42410841
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42410841
    reference: chr 19
allele count: 1
allele frequency: 8.590474881451447e-6
allele num: 116408
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000595897
  gene symbol: ARHGEF1
  hgvsc: ENST00000595897.1:n.2523-14C>G
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000469735
  ensembl transcript: ENST00000599589
  gene symbol: ARHGEF1
  hgvsc: ENST00000599589.1:c.1765-14C>G
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.2824-14C>G
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000593609
  gene symbol: ARHGEF1
  hgvsc: ENST00000593609.1:n.114C>G
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.2701-14C>G
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.2656-14C>G
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.2438-14C>G
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.2989-14C>G
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.2557-14C>G
  variant of: http://identifiers.org/hgnc/681
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15547
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2240
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2214
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2243
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35966
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS

19-42410843-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42410843
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42410843
    reference: chr 19
allele count: 3
allele frequency: 2.571795970852979e-5
allele num: 116650
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.2701-12C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.2824-12C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.2438-12C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000469735
  ensembl transcript: ENST00000599589
  gene symbol: ARHGEF1
  hgvsc: ENST00000599589.1:c.1765-12C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.2656-12C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000595897
  gene symbol: ARHGEF1
  hgvsc: ENST00000595897.1:n.2523-12C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.2557-12C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.2989-12C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000593609
  gene symbol: ARHGEF1
  hgvsc: ENST00000593609.1:n.116C>T
  variant of: http://identifiers.org/hgnc/681
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2256
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2056
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36017
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15818
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2145
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3884
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 853
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQRankSum

http://identifiers.org/exac.variant/19-42410847-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42410847
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42410847
    reference: chr 19
allele count: 75
allele frequency: 6.400955876077494e-4
allele num: 117170
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.2989-8C>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.2824-8C>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.2656-8C>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.2557-8C>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000469735
  ensembl transcript: ENST00000599589
  gene symbol: ARHGEF1
  hgvsc: ENST00000599589.1:c.1765-8C>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.2438-8C>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.2701-8C>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000595897
  gene symbol: ARHGEF1
  hgvsc: ENST00000595897.1:n.2523-8C>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000593609
  gene symbol: ARHGEF1
  hgvsc: ENST00000593609.1:n.120C>A
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1765
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16163
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 3.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1935
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 4.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 36279
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2264
  bin: 3.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 4.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 670
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3975
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 717
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 612
  bin: 7.75e1
  variant carriers: 0
hgvs: c.2701-8C>A
num of homozygotes: 1
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

19-42410876-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42410876
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42410876
    reference: chr 19
allele count: 2
allele frequency: 1.69030273321952e-5
allele num: 118322
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.3010C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.2578C>T
  hgvsp: ENSP00000344429.3:p.Arg860Cys
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.2677C>T
  hgvsp: ENSP00000346532.2:p.Arg893Cys
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.2845C>T
  hgvsp: ENSP00000470715.1:p.Arg949Cys
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000593609
  gene symbol: ARHGEF1
  hgvsc: ENST00000593609.1:n.149C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.2722C>T
  hgvsp: ENSP00000337261.3:p.Arg908Cys
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000595897
  gene symbol: ARHGEF1
  hgvsc: ENST00000595897.1:n.2544C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.2459C>T
  hgvsp: ENSP00000367394.3:p.Pro820Leu
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000469735
  ensembl transcript: ENST00000599589
  gene symbol: ARHGEF1
  hgvsc: ENST00000599589.1:c.1786C>T
  hgvsp: ENSP00000469735.1:p.Pro596Leu
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36828
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2405
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17494
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg908Cys
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum

19-42410877-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42410877
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42410877
    reference: chr 19
allele count: 5
allele frequency: 4.225971128165252e-5
allele num: 118316
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000469735
  ensembl transcript: ENST00000599589
  gene symbol: ARHGEF1
  hgvsc: ENST00000599589.1:c.1787G>A
  hgvsp: ENST00000599589.1:c.1787G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.3011G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000593609
  gene symbol: ARHGEF1
  hgvsc: ENST00000593609.1:n.150G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.2723G>A
  hgvsp: ENSP00000337261.3:p.Arg908His
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.2579G>A
  hgvsp: ENSP00000344429.3:p.Arg860His
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.2460G>A
  hgvsp: ENST00000378152.4:c.2460G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.2678G>A
  hgvsp: ENSP00000346532.2:p.Arg893His
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000595897
  gene symbol: ARHGEF1
  hgvsc: ENST00000595897.1:n.2545G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.2846G>A
  hgvsp: ENSP00000470715.1:p.Arg949His
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36800
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2402
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17567
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1418
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg908His
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: European (Finnish)
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum

19-42410901-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42410901
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42410901
    reference: chr 19
allele count: 1
allele frequency: 8.482627578718784e-6
allele num: 117888
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.2870T>C
  hgvsp: ENSP00000470715.1:p.Leu957Pro
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.2702T>C
  hgvsp: ENSP00000346532.2:p.Leu901Pro
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.2603T>C
  hgvsp: ENSP00000344429.3:p.Leu868Pro
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.2747T>C
  hgvsp: ENSP00000337261.3:p.Leu916Pro
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000593609
  gene symbol: ARHGEF1
  hgvsc: ENST00000593609.1:n.174T>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.2484T>C
  hgvsp: ENST00000378152.4:c.2484T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000595897
  gene symbol: ARHGEF1
  hgvsc: ENST00000595897.1:n.2569T>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000469735
  ensembl transcript: ENST00000599589
  gene symbol: ARHGEF1
  hgvsc: ENST00000599589.1:c.1811T>C
  hgvsp: ENST00000599589.1:c.1811T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.3035T>C
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17842
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1413
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35926
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1626
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2365
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4080
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Leu916Pro
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: African
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

19-42410902-T-TG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42410902
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42410903
    reference: chr 19
allele count: 3
allele frequency: 2.547684155103011e-5
allele num: 117754
alternate allele: TG
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.2754dupG
  hgvsp: ENSP00000337261.3:p.Asn919GlufsTer119
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.2709dupG
  hgvsp: ENSP00000346532.2:p.Asn904GlufsTer119
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.2491dupG
  hgvsp: ENSP00000367394.3:p.Glu831GlyfsTer68
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.3042dupG
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000595897
  gene symbol: ARHGEF1
  hgvsc: ENST00000595897.1:n.2576dupG
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000593609
  gene symbol: ARHGEF1
  hgvsc: ENST00000593609.1:n.181dupG
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.2877dupG
  hgvsp: ENSP00000470715.1:p.Asn960GlufsTer119
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.2610dupG
  hgvsp: ENSP00000344429.3:p.Asn871GlufsTer119
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000469735
  ensembl transcript: ENST00000599589
  gene symbol: ARHGEF1
  hgvsc: ENST00000599589.1:c.1818dupG
  hgvsp: ENSP00000469735.1:p.Glu607GlyfsTer25
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17801
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2386
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35778
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 840
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Asn919GlufsTer119
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: DP

19-42410904-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42410904
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42410904
    reference: chr 19
allele count: 5
allele frequency: 4.247943995106368e-5
allele num: 117704
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000593609
  gene symbol: ARHGEF1
  hgvsc: ENST00000593609.1:n.177G>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.2873G>T
  hgvsp: ENSP00000470715.1:p.Gly958Val
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000469735
  ensembl transcript: ENST00000599589
  gene symbol: ARHGEF1
  hgvsc: ENST00000599589.1:c.1814G>T
  hgvsp: ENSP00000469735.1:p.Trp605Cys
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.2750G>T
  hgvsp: ENSP00000337261.3:p.Gly917Val
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000595897
  gene symbol: ARHGEF1
  hgvsc: ENST00000595897.1:n.2572G>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.2606G>T
  hgvsp: ENSP00000344429.3:p.Gly869Val
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.2705G>T
  hgvsp: ENSP00000346532.2:p.Gly902Val
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.3038G>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.2487G>T
  hgvsp: ENSP00000367394.3:p.Trp829Cys
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17780
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1519
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2379
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1693
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35738
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4035
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 834
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 9.75e1
  variant carriers: 5
hgvs: p.Gly917Val
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

19-42410908-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42410908
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42410908
    reference: chr 19
allele count: 1
allele frequency: 8.512232077495362e-6
allele num: 117478
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.2709G>A
  hgvsp: ENST00000354532.3:c.2709G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.3042G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.2610G>A
  hgvsp: ENST00000347545.4:c.2610G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.2491G>A
  hgvsp: ENSP00000367394.3:p.Glu831Lys
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.2754G>A
  hgvsp: ENST00000337665.4:c.2754G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000469735
  ensembl transcript: ENST00000599589
  gene symbol: ARHGEF1
  hgvsc: ENST00000599589.1:c.1818G>A
  hgvsp: ENSP00000469735.1:p.Glu607Lys
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000595897
  gene symbol: ARHGEF1
  hgvsc: ENST00000595897.1:n.2576G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.2877G>A
  hgvsp: ENST00000599846.1:c.2877G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000593609
  gene symbol: ARHGEF1
  hgvsc: ENST00000593609.1:n.181G>A
  variant of: http://identifiers.org/hgnc/681
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35565
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1698
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1809
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2343
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17660
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49326
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 829
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Glu831Lys
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

19-42410910-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42410910
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42410910
    reference: chr 19
allele count: 1
allele frequency: 8.520935939603607e-6
allele num: 117358
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.2756A>T
  hgvsp: ENSP00000337261.3:p.Asn919Ile
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000469735
  ensembl transcript: ENST00000599589
  gene symbol: ARHGEF1
  hgvsc: ENST00000599589.1:c.1820A>T
  hgvsp: ENSP00000469735.1:p.Glu607Asp
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.2711A>T
  hgvsp: ENSP00000346532.2:p.Asn904Ile
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000593609
  gene symbol: ARHGEF1
  hgvsc: ENST00000593609.1:n.183A>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000595897
  gene symbol: ARHGEF1
  hgvsc: ENST00000595897.1:n.2578A>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.2612A>T
  hgvsp: ENSP00000344429.3:p.Asn871Ile
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.3044A>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.2493A>T
  hgvsp: ENSP00000367394.3:p.Glu831Asp
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.2879A>T
  hgvsp: ENSP00000470715.1:p.Asn960Ile
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35460
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1798
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2316
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1861
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17577
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2940
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Asn919Ile
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/19-42410921-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42410921
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42410921
    reference: chr 19
allele count: 1
allele frequency: 8.609260120185271e-6
allele num: 116154
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.2767C>A
  hgvsp: ENSP00000337261.3:p.Gln923Lys
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.2504C>A
  hgvsp: ENSP00000367394.3:p.Pro835Gln
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.2890C>A
  hgvsp: ENSP00000470715.1:p.Gln964Lys
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000595897
  gene symbol: ARHGEF1
  hgvsc: ENST00000595897.1:n.2589C>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.3055C>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.2722C>A
  hgvsp: ENSP00000346532.2:p.Gln908Lys
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000469735
  ensembl transcript: ENST00000599589
  gene symbol: ARHGEF1
  hgvsc: ENST00000599589.1:c.1831C>A
  hgvsp: ENSP00000469735.1:p.Pro611Gln
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000593609
  gene symbol: ARHGEF1
  hgvsc: ENST00000593609.1:n.194C>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.2623C>A
  hgvsp: ENSP00000344429.3:p.Gln875Lys
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2736
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2358
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34111
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2281
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17219
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 707
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 602
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4019
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gln923Lys
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/19-42410924-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42410924
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42410924
    reference: chr 19
allele count: 26
allele frequency: 2.24688029313146e-4
allele num: 115716
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.3058C>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000595897
  gene symbol: ARHGEF1
  hgvsc: ENST00000595897.1:n.2592C>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000469735
  ensembl transcript: ENST00000599589
  gene symbol: ARHGEF1
  hgvsc: ENST00000599589.1:c.1834C>A
  hgvsp: ENSP00000469735.1:p.Ala612Asp
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.2725C>A
  hgvsp: ENSP00000346532.2:p.Pro909Thr
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.2626C>A
  hgvsp: ENSP00000344429.3:p.Pro876Thr
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000593609
  gene symbol: ARHGEF1
  hgvsc: ENST00000593609.1:n.197C>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.2893C>A
  hgvsp: ENSP00000470715.1:p.Pro965Thr
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.2770C>A
  hgvsp: ENSP00000337261.3:p.Pro924Thr
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.2507C>A
  hgvsp: ENSP00000367394.3:p.Ala836Asp
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33514
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2566
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17051
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2268
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3145
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 761
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Pro924Thr
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

19-42410928-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42410928
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42410928
    reference: chr 19
allele count: 5
allele frequency: 4.339901050256054e-5
allele num: 115210
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000595897
  gene symbol: ARHGEF1
  hgvsc: ENST00000595897.1:n.2596G>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.2511G>C
  hgvsp: ENSP00000367394.3:p.Trp837Cys
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.2729G>C
  hgvsp: ENSP00000346532.2:p.Gly910Ala
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.2630G>C
  hgvsp: ENSP00000344429.3:p.Gly877Ala
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000469735
  ensembl transcript: ENST00000599589
  gene symbol: ARHGEF1
  hgvsc: ENST00000599589.1:c.1838G>C
  hgvsp: ENSP00000469735.1:p.Trp613Cys
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.2774G>C
  hgvsp: ENSP00000337261.3:p.Gly925Ala
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000593609
  gene symbol: ARHGEF1
  hgvsc: ENST00000593609.1:n.201G>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.2897G>C
  hgvsp: ENSP00000470715.1:p.Gly966Ala
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.3062G>C
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2223
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2808
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33169
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16866
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3472
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Gly925Ala
num of homozygotes: 0
population: Latino
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

19-42410932-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42410932
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42410932
    reference: chr 19
allele count: 1
allele frequency: 8.743092956564315e-6
allele num: 114376
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.2778C>T
  hgvsp: ENST00000337665.4:c.2778C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000469735
  ensembl transcript: ENST00000599589
  gene symbol: ARHGEF1
  hgvsc: ENST00000599589.1:c.1842C>T
  hgvsp: ENSP00000469735.1:p.His615Tyr
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000595897
  gene symbol: ARHGEF1
  hgvsc: ENST00000595897.1:n.2600C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.2515C>T
  hgvsp: ENSP00000367394.3:p.His839Tyr
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.2901C>T
  hgvsp: ENST00000599846.1:c.2901C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.2634C>T
  hgvsp: ENST00000347545.4:c.2634C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.2733C>T
  hgvsp: ENST00000354532.3:c.2733C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000593609
  gene symbol: ARHGEF1
  hgvsc: ENST00000593609.1:n.205C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.3066C>T
  variant of: http://identifiers.org/hgnc/681
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32332
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3189
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4024
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16657
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2194
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
hgvs: p.His839Tyr
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

19-42410934-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42410934
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42410934
    reference: chr 19
allele count: 1
allele frequency: 8.796312585764048e-6
allele num: 113684
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.3068C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000469735
  ensembl transcript: ENST00000599589
  gene symbol: ARHGEF1
  hgvsc: ENST00000599589.1:c.1844C>T
  hgvsp: ENST00000599589.1:c.1844C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.2903C>T
  hgvsp: ENSP00000470715.1:p.Thr968Ile
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.2780C>T
  hgvsp: ENSP00000337261.3:p.Thr927Ile
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.2735C>T
  hgvsp: ENSP00000346532.2:p.Thr912Ile
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.2636C>T
  hgvsp: ENSP00000344429.3:p.Thr879Ile
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000595897
  gene symbol: ARHGEF1
  hgvsc: ENST00000595897.1:n.2602C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000593609
  gene symbol: ARHGEF1
  hgvsc: ENST00000593609.1:n.207C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.2517C>T
  hgvsp: ENST00000378152.4:c.2517C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31488
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4627
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16414
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1440
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2181
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3522
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 589
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Thr927Ile
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: FS

19-42410937-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42410937
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42410937
    reference: chr 19
allele count: 2
allele frequency: 1.769911504424779e-5
allele num: 113000
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000595897
  gene symbol: ARHGEF1
  hgvsc: ENST00000595897.1:n.2605G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000593609
  gene symbol: ARHGEF1
  hgvsc: ENST00000593609.1:n.210G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: stop_retained_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.2906G>A
  hgvsp: ENST00000599846.1:c.2906G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: stop_retained_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.2783G>A
  hgvsp: ENST00000337665.4:c.2783G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: stop_retained_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.2639G>A
  hgvsp: ENST00000347545.4:c.2639G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.3071G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: stop_retained_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.2738G>A
  hgvsp: ENST00000354532.3:c.2738G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000469735
  ensembl transcript: ENST00000599589
  gene symbol: ARHGEF1
  hgvsc: ENST00000599589.1:c.1847G>A
  hgvsp: ENST00000599589.1:c.1847G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.2520G>A
  hgvsp: ENST00000378152.4:c.2520G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: stop retained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5170
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30754
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3827
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1569
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2161
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16159
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 634
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ter928Ter
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

19-42410940-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42410940
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42410940
    reference: chr 19
allele count: 1
allele frequency: 8.904560916101227e-6
allele num: 112302
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.*2G>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.*2G>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.3074G>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000593609
  gene symbol: ARHGEF1
  hgvsc: ENST00000593609.1:n.213G>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.*2G>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000469735
  ensembl transcript: ENST00000599589
  gene symbol: ARHGEF1
  hgvsc: ENST00000599589.1:c.1850G>T
  hgvsp: ENSP00000469735.1:p.Arg617Ser
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.*2G>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.2523G>T
  hgvsp: ENSP00000367394.3:p.Arg841Ser
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000595897
  gene symbol: ARHGEF1
  hgvsc: ENST00000595897.1:n.2608G>T
  variant of: http://identifiers.org/hgnc/681
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4153
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1663
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15951
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29949
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2131
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5762
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 663
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 494
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 581
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1307
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg841Ser
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum

19-42410945-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42410945
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42410945
    reference: chr 19
allele count: 3
allele frequency: 2.717834429526553e-5
allele num: 110382
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.3079C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.2528C>T
  hgvsp: ENSP00000367394.3:p.Pro843Leu
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.*7C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.*7C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.*7C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000469735
  ensembl transcript: ENST00000599589
  gene symbol: ARHGEF1
  hgvsc: ENST00000599589.1:c.1855C>T
  hgvsp: ENSP00000469735.1:p.Pro619Leu
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000595897
  gene symbol: ARHGEF1
  hgvsc: ENST00000595897.1:n.2613C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000593609
  gene symbol: ARHGEF1
  hgvsc: ENST00000593609.1:n.218C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.*7C>T
  variant of: http://identifiers.org/hgnc/681
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4901
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2145
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15332
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27902
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2068
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7178
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1685
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 458
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9151
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 839
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Pro843Leu
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum

19-42410946-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42410946
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42410946
    reference: chr 19
allele count: 6
allele frequency: 5.479552137938593e-5
allele num: 109498
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.*8G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.*8G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000593609
  gene symbol: ARHGEF1
  hgvsc: ENST00000593609.1:n.219G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.*8G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.2529G>A
  hgvsp: ENST00000378152.4:c.2529G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000595897
  gene symbol: ARHGEF1
  hgvsc: ENST00000595897.1:n.2614G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.*8G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.3080G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000469735
  ensembl transcript: ENST00000599589
  gene symbol: ARHGEF1
  hgvsc: ENST00000599589.1:c.1856G>A
  hgvsp: ENST00000599589.1:c.1856G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/681
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26839
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2105
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15053
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2255
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7932
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5296
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 786
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 776
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Pro843Pro
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: FS

19-42410953-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42410953
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42410953
    reference: chr 19
allele count: 1
allele frequency: 9.328532248735983e-6
allele num: 107198
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.*15A>G
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000469735
  ensembl transcript: ENST00000599589
  gene symbol: ARHGEF1
  hgvsc: ENST00000599589.1:c.1863A>G
  hgvsp: ENSP00000469735.1:p.Lys622Glu
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.*15A>G
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.3087A>G
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.*15A>G
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000595897
  gene symbol: ARHGEF1
  hgvsc: ENST00000595897.1:n.2621A>G
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000593609
  gene symbol: ARHGEF1
  hgvsc: ENST00000593609.1:n.226A>G
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.*15A>G
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.2536A>G
  hgvsp: ENSP00000367394.3:p.Lys846Glu
  variant of: http://identifiers.org/hgnc/681
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14002
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10169
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1883
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6428
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2615
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24308
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 512
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1145
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Lys846Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD

19-42410965-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42410965
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42410965
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 100562
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000593609
  gene symbol: ARHGEF1
  hgvsc: ENST00000593609.1:n.228+10G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.3089+10G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000595897
  gene symbol: ARHGEF1
  hgvsc: ENST00000595897.1:n.2623+10G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.*17+10G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.*17+10G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000469735
  ensembl transcript: ENST00000599589
  gene symbol: ARHGEF1
  hgvsc: ENST00000599589.1:c.1865+10G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.2538+10G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.*17+10G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.*17+10G>A
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9098
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1487
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17411
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16037
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10184
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4760
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22589
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1040
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1805
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Other
population: Latino
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: QD

19-42410971-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42410971
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42410971
    reference: chr 19
allele count: 3
allele frequency: 3.071064430931761e-5
allele num: 97686
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.*17+16G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000469735
  ensembl transcript: ENST00000599589
  gene symbol: ARHGEF1
  hgvsc: ENST00000599589.1:c.1865+16G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.*17+16G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000595897
  gene symbol: ARHGEF1
  hgvsc: ENST00000595897.1:n.2623+16G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.2538+16G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.3089+16G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.*17+16G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000593609
  gene symbol: ARHGEF1
  hgvsc: ENST00000593609.1:n.228+16G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.*17+16G>A
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9959
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8314
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1344
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20541
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12527
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5991
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20205
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1547
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5930
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 607
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 710
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5042
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD

19-42410973-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42410973
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42410973
    reference: chr 19
allele count: 3
allele frequency: 3.112614388578781e-5
allele num: 96382
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000469735
  ensembl transcript: ENST00000599589
  gene symbol: ARHGEF1
  hgvsc: ENST00000599589.1:c.1865+18G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000593609
  gene symbol: ARHGEF1
  hgvsc: ENST00000593609.1:n.228+18G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.3089+18G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.*17+18G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.2538+18G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.*17+18G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.*17+18G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000595897
  gene symbol: ARHGEF1
  hgvsc: ENST00000595897.1:n.2623+18G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.*17+18G>A
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7098
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6967
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22153
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10644
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10350
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5507
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14522
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 788
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6729
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 602
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 857
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: European (Finnish)
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

19-42410981-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42410981
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42410981
    reference: chr 19
allele count: 2
allele frequency: 2.160433815110074e-5
allele num: 92574
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000595897
  gene symbol: ARHGEF1
  hgvsc: ENST00000595897.1:n.2623+26G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000593609
  gene symbol: ARHGEF1
  hgvsc: ENST00000593609.1:n.228+26G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.*17+26G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.2538+26G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.*17+26G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000469735
  ensembl transcript: ENST00000599589
  gene symbol: ARHGEF1
  hgvsc: ENST00000599589.1:c.1865+26G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.*17+26G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.3089+26G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.*17+26G>A
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2223
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23737
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4700
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7858
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9110
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11492
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1306
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2506
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6226
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8074
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1065
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 696
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum

19-42410983-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42410983
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42410983
    reference: chr 19
allele count: 149
allele frequency: 1.638082673702727e-3
allele num: 90960
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000593609
  gene symbol: ARHGEF1
  hgvsc: ENST00000593609.1:n.228+28G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000469735
  ensembl transcript: ENST00000599589
  gene symbol: ARHGEF1
  hgvsc: ENST00000599589.1:c.1865+28G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.*17+28G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.3089+28G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.2538+28G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.*17+28G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.*17+28G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000595897
  gene symbol: ARHGEF1
  hgvsc: ENST00000595897.1:n.2623+28G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.*17+28G>A
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23862
  bin: 1.25e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11816
  bin: 7.5e0
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4378
  bin: 2.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7558
  bin: 2.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 9222
  bin: 1.75e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 2319
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 3.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 7.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 500
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6204
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 509
  bin: 9.75e1
  variant carriers: 138
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 8055
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 4
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: Other
population: South Asian
reference allele: G
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

19-42410986-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42410986
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42410986
    reference: chr 19
allele count: 1
allele frequency: 1.115001226501349e-5
allele num: 89686
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.3089+31G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.*17+31G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.*17+31G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.*17+31G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000595897
  gene symbol: ARHGEF1
  hgvsc: ENST00000595897.1:n.2623+31G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.2538+31G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000469735
  ensembl transcript: ENST00000599589
  gene symbol: ARHGEF1
  hgvsc: ENST00000599589.1:c.1865+31G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000593609
  gene symbol: ARHGEF1
  hgvsc: ENST00000593609.1:n.228+31G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.*17+31G>A
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23904
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12341
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6167
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10511
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2616
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3683
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7723
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3048
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1261
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: QD

19-42410988-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42410988
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42410988
    reference: chr 19
allele count: 1
allele frequency: 1.119494883908381e-5
allele num: 89326
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.2538+33C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000595897
  gene symbol: ARHGEF1
  hgvsc: ENST00000595897.1:n.2623+33C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.*17+33C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000469735
  ensembl transcript: ENST00000599589
  gene symbol: ARHGEF1
  hgvsc: ENST00000599589.1:c.1865+33C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.*17+33C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.*17+33C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000593609
  gene symbol: ARHGEF1
  hgvsc: ENST00000593609.1:n.228+33C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.3089+33C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.*17+33C>T
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12576
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23845
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2684
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10771
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3488
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5890
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3132
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5078
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1350
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

19-42410995-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42410995
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42410995
    reference: chr 19
allele count: 1
allele frequency: 1.164090147140995e-5
allele num: 85904
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.*17+40G>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000593609
  gene symbol: ARHGEF1
  hgvsc: ENST00000593609.1:n.228+40G>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.3089+40G>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.2538+40G>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000469735
  ensembl transcript: ENST00000599589
  gene symbol: ARHGEF1
  hgvsc: ENST00000599589.1:c.1865+40G>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000595897
  gene symbol: ARHGEF1
  hgvsc: ENST00000595897.1:n.2623+40G>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.*17+40G>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.*17+40G>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.*17+40G>C
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2904
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22708
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4560
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12664
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14083
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3602
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 584
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4900
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

19-42411001-TC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42411001
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42411000
    reference: chr 19
allele count: 1
allele frequency: 1.213150551983501e-5
allele num: 82430
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000469735
  ensembl transcript: ENST00000599589
  gene symbol: ARHGEF1
  hgvsc: ENST00000599589.1:c.1865+51delC
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000595897
  gene symbol: ARHGEF1
  hgvsc: ENST00000595897.1:n.2623+51delC
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.*17+51delC
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.*17+51delC
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.*17+51delC
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.3089+51delC
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.2538+51delC
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000593609
  gene symbol: ARHGEF1
  hgvsc: ENST00000593609.1:n.228+51delC
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.*17+51delC
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 1803
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12469
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15358
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5033
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21724
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2940
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4661
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 665
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2249
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16042
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: TC
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: DP

19-42411004-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42411004
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42411004
    reference: chr 19
allele count: 2
allele frequency: 2.489048187972919e-5
allele num: 80352
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.*17+49C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.3089+49C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000595897
  gene symbol: ARHGEF1
  hgvsc: ENST00000595897.1:n.2623+49C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.2538+49C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.*17+49C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.*17+49C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000593609
  gene symbol: ARHGEF1
  hgvsc: ENST00000593609.1:n.228+49C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.*17+49C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000469735
  ensembl transcript: ENST00000599589
  gene symbol: ARHGEF1
  hgvsc: ENST00000599589.1:c.1865+49C>T
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15686
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1759
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2938
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21505
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5094
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12348
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13799
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 885
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 638
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2988
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1826
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD

19-42411005-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42411005
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42411005
    reference: chr 19
allele count: 1
allele frequency: 1.243317170210121e-5
allele num: 80430
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.2538+50C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000595897
  gene symbol: ARHGEF1
  hgvsc: ENST00000595897.1:n.2623+50C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.*17+50C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.*17+50C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.3089+50C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.*17+50C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.*17+50C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000469735
  ensembl transcript: ENST00000599589
  gene symbol: ARHGEF1
  hgvsc: ENST00000599589.1:c.1865+50C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000593609
  gene symbol: ARHGEF1
  hgvsc: ENST00000593609.1:n.228+50C>T
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15637
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12316
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21574
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2928
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5086
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1785
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 970
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1797
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 583
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8864
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

19-42411236-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42411236
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42411236
    reference: chr 19
allele count: 1
allele frequency: 4.038772213247173e-4
allele num: 2476
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000469735
  ensembl transcript: ENST00000599589
  gene symbol: ARHGEF1
  hgvsc: ENST00000599589.1:c.1865+281C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.3090-21C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.*18-21C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.*18-21C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.*18-21C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000593609
  gene symbol: ARHGEF1
  hgvsc: ENST00000593609.1:n.229-21C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000595897
  gene symbol: ARHGEF1
  hgvsc: ENST00000595897.1:n.2624-21C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.2539-21C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.*18-21C>T
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10026
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3983
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8788
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1292
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: QD

19-42411249-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42411249
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42411249
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 3110
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.2539-8T>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.*18-8T>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.*18-8T>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.*18-8T>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000469735
  ensembl transcript: ENST00000599589
  gene symbol: ARHGEF1
  hgvsc: ENST00000599589.1:c.1865+294T>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.3090-8T>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000593609
  gene symbol: ARHGEF1
  hgvsc: ENST00000593609.1:n.229-8T>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000595897
  gene symbol: ARHGEF1
  hgvsc: ENST00000595897.1:n.2624-8T>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.*18-8T>A
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: splice region
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8041
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4529
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4170
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 1.25e1
  variant carriers: 0
hgvs: c.*18-8T>A
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ

19-42411340-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42411340
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42411340
    reference: chr 19
allele count: 1
allele frequency: 1.252191334835963e-4
allele num: 7986
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000595897
  gene symbol: ARHGEF1
  hgvsc: ENST00000595897.1:n.2707C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.2622C>T
  hgvsp: ENST00000378152.4:c.2622C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.*101C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.*101C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000593609
  gene symbol: ARHGEF1
  hgvsc: ENST00000593609.1:n.312C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.*101C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.*101C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.3173C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000469735
  ensembl transcript: ENST00000599589
  gene symbol: ARHGEF1
  hgvsc: ENST00000599589.1:c.1865+385C>T
  variant of: http://identifiers.org/hgnc/681
canonical: false
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2706
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4140
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1936
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 648
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3840
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3222
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Pro874Pro
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP

19-42411341-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42411341
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42411341
    reference: chr 19
allele count: 4
allele frequency: 5.033979360684622e-4
allele num: 7946
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.*102G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.*102G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000593609
  gene symbol: ARHGEF1
  hgvsc: ENST00000593609.1:n.313G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.3174G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000469735
  ensembl transcript: ENST00000599589
  gene symbol: ARHGEF1
  hgvsc: ENST00000599589.1:c.1865+386G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.2623G>A
  hgvsp: ENSP00000367394.3:p.Glu875Lys
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.*102G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.*102G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000595897
  gene symbol: ARHGEF1
  hgvsc: ENST00000595897.1:n.2708G>A
  variant of: http://identifiers.org/hgnc/681
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4061
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1959
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2707
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3202
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3739
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Glu875Lys
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum

19-42411371-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42411371
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42411371
    reference: chr 19
allele count: 1
allele frequency: 1.311647429171039e-4
allele num: 7624
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.*132C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.*132C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.3204C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.2653C>T
  hgvsp: ENSP00000367394.3:p.Arg885Cys
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000593609
  gene symbol: ARHGEF1
  hgvsc: ENST00000593609.1:n.343C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.*132C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000595897
  gene symbol: ARHGEF1
  hgvsc: ENST00000595897.1:n.2738C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000469735
  ensembl transcript: ENST00000599589
  gene symbol: ARHGEF1
  hgvsc: ENST00000599589.1:c.1865+416C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.*132C>T
  variant of: http://identifiers.org/hgnc/681
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3840
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2698
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2080
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 866
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3130
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 584
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg885Cys
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum

19-42411377-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42411377
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42411377
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 7752
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000469735
  ensembl transcript: ENST00000599589
  gene symbol: ARHGEF1
  hgvsc: ENST00000599589.1:c.1865+422G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.2659G>A
  hgvsp: ENSP00000367394.3:p.Gly887Arg
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.3210G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.*138G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000593609
  gene symbol: ARHGEF1
  hgvsc: ENST00000593609.1:n.349G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.*138G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.*138G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.*138G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000595897
  gene symbol: ARHGEF1
  hgvsc: ENST00000595897.1:n.2744G>A
  variant of: http://identifiers.org/hgnc/681
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2076
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3815
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2696
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 605
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3534
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gly887Arg
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum

19-42411405-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42411405
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42411405
    reference: chr 19
allele count: 1
allele frequency: 1.216841080554879e-4
allele num: 8218
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.*166C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.2687C>T
  hgvsp: ENSP00000367394.3:p.Pro896Leu
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.*166C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000595897
  gene symbol: ARHGEF1
  hgvsc: ENST00000595897.1:n.2772C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000593609
  gene symbol: ARHGEF1
  hgvsc: ENST00000593609.1:n.377C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000469735
  ensembl transcript: ENST00000599589
  gene symbol: ARHGEF1
  hgvsc: ENST00000599589.1:c.1865+450C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.3238C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.*166C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.*166C>T
  variant of: http://identifiers.org/hgnc/681
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3885
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1966
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2466
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2964
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1315
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Pro896Leu
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

19-42411417-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42411417
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42411417
    reference: chr 19
allele count: 8
allele frequency: 9.178522257916476e-4
allele num: 8716
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.*178G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.*178G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.2699G>A
  hgvsp: ENSP00000367394.3:p.Arg900Gln
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000595897
  gene symbol: ARHGEF1
  hgvsc: ENST00000595897.1:n.2784G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000469735
  ensembl transcript: ENST00000599589
  gene symbol: ARHGEF1
  hgvsc: ENST00000599589.1:c.1865+462G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.*178G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.3250G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000593609
  gene symbol: ARHGEF1
  hgvsc: ENST00000593609.1:n.389G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.*178G>A
  variant of: http://identifiers.org/hgnc/681
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3934
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1664
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2275
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1759
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 508
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg900Gln
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

19-42411478-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42411478
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42411478
    reference: chr 19
allele count: 1
allele frequency: 8.922198429693076e-5
allele num: 11208
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.*239C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.*239C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.2760C>T
  hgvsp: ENST00000378152.4:c.2760C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000593609
  gene symbol: ARHGEF1
  hgvsc: ENST00000593609.1:n.450C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.*239C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.*239C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000469735
  ensembl transcript: ENST00000599589
  gene symbol: ARHGEF1
  hgvsc: ENST00000599589.1:c.1865+523C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.3311C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000595897
  gene symbol: ARHGEF1
  hgvsc: ENST00000595897.1:n.2845C>T
  variant of: http://identifiers.org/hgnc/681
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1217
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1294
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3128
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3332
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3791
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
hgvs: p.His920His
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Other
population: East Asian
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

19-42411486-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42411486
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42411486
    reference: chr 19
allele count: 1
allele frequency: 8.667013347200555e-5
allele num: 11538
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.*247C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000595897
  gene symbol: ARHGEF1
  hgvsc: ENST00000595897.1:n.2853C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.3319C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.*247C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.*247C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000469735
  ensembl transcript: ENST00000599589
  gene symbol: ARHGEF1
  hgvsc: ENST00000599589.1:c.1865+531C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.2768C>T
  hgvsp: ENSP00000367394.3:p.Pro923Leu
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.*247C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000593609
  gene symbol: ARHGEF1
  hgvsc: ENST00000593609.1:n.458C>T
  variant of: http://identifiers.org/hgnc/681
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3308
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1500
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3344
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3017
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1199
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro923Leu
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff

19-42411507-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42411507
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42411507
    reference: chr 19
allele count: 1
allele frequency: 8.272667107875579e-5
allele num: 12088
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.3340G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000595897
  gene symbol: ARHGEF1
  hgvsc: ENST00000595897.1:n.2874G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.2789G>A
  hgvsp: ENSP00000367394.3:p.Cys930Tyr
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.*268G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.*268G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.*268G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.*268G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000593609
  gene symbol: ARHGEF1
  hgvsc: ENST00000593609.1:n.479G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000469735
  ensembl transcript: ENST00000599589
  gene symbol: ARHGEF1
  hgvsc: ENST00000599589.1:c.1865+552G>A
  variant of: http://identifiers.org/hgnc/681
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3817
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3502
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1734
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 946
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Cys930Tyr
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

19-42411517-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42411517
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42411517
    reference: chr 19
allele count: 1
allele frequency: 8.242664029014178e-5
allele num: 12132
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.*278C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000595897
  gene symbol: ARHGEF1
  hgvsc: ENST00000595897.1:n.2884C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.*278C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.2799C>T
  hgvsp: ENST00000378152.4:c.2799C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.3350C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.*278C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000593609
  gene symbol: ARHGEF1
  hgvsc: ENST00000593609.1:n.489C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.*278C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000469735
  ensembl transcript: ENST00000599589
  gene symbol: ARHGEF1
  hgvsc: ENST00000599589.1:c.1865+562C>T
  variant of: http://identifiers.org/hgnc/681
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1811
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3207
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3754
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2976
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 903
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5151
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 7.25e1
  variant carriers: 0
hgvs: p.His933His
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: African
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: DP

19-42411570-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42411570
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42411570
    reference: chr 19
allele count: 1
allele frequency: 9.359790340696369e-5
allele num: 10684
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.*331G>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.3403G>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000469735
  ensembl transcript: ENST00000599589
  gene symbol: ARHGEF1
  hgvsc: ENST00000599589.1:c.1865+615G>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.*331G>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000593609
  gene symbol: ARHGEF1
  hgvsc: ENST00000593609.1:n.542G>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.*331G>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.*331G>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.*5G>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000595897
  gene symbol: ARHGEF1
  hgvsc: ENST00000595897.1:n.2937G>C
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2115
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2239
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1313
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3259
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1858
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ

19-42411583-T-TAATA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42411583
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42411587
    reference: chr 19
allele count: 1
allele frequency: 1.066098081023454e-4
allele num: 9380
alternate allele: TAATA
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.*345_*348dupAATA
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.*345_*348dupAATA
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.*19_*22dupAATA
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000469735
  ensembl transcript: ENST00000599589
  gene symbol: ARHGEF1
  hgvsc: ENST00000599589.1:c.1865+629_1865+632dupAATA
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000595897
  gene symbol: ARHGEF1
  hgvsc: ENST00000595897.1:n.2951_2954dupAATA
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.*345_*348dupAATA
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.3417_3420dupAATA
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.*345_*348dupAATA
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000593609
  gene symbol: ARHGEF1
  hgvsc: ENST00000593609.1:n.556_559dupAATA
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: 3' UTR
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2208
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2589
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1619
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
reference allele: T

GenotypeQuality
all individuals: 593
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 770
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 412
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 505
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 376
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5084
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 398
bin: 9.75e1
variant carriers: 12

GenotypeQuality
all individuals: 44741
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 449
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1104
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 1.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.421814641499953e-5
allele num: 63682
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16388
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 7
allele frequency: 1.147164863979023e-3
allele num: 6102
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11354
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.8e-2

QD
type: SiteQuality
SIO_000300: 1.446e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.754e0

FS
type: SiteQuality
SIO_000300: 3.779e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.96e-1

DP
type: SiteQuality
SIO_000300: 1.386382e6

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.94e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

GenotypeQuality
all individuals: 873
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 398
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 389
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 526
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1087
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 765
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44925
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3749
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11326
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9652
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8498
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63536
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.1020258725897e-5
allele num: 16388
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6092
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

QD
type: SiteQuality
SIO_000300: 1.199e1

VQSLOD
type: SiteQuality
SIO_000300: -2.15e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.108e0

MQ
type: SiteQuality
SIO_000300: 5.954e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.48e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.291e0

DP
type: SiteQuality
SIO_000300: 1.382376e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.84e0

GenotypeQuality
all individuals: 80
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4943
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1079
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 952
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 445
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 375
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 408
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 607
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 994
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44269
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3989
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.103515625e-5
allele num: 16384
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6056
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8478
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11304
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63396
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.27e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.92e-1

MQ
type: SiteQuality
SIO_000300: 5.95e1

QD
type: SiteQuality
SIO_000300: 1.091e1

VQSLOD
type: SiteQuality
SIO_000300: 1.63e0

DP
type: SiteQuality
SIO_000300: 1.377133e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

FS
type: SiteQuality
SIO_000300: 2.807e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.46e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.225e0

GenotypeQuality
all individuals: 127
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1079
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 994
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 607
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3989
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4943
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 764
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 445
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 414
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 44269
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 389
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 375
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.037990450487856e-4
allele num: 9634
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.73215975771342e-5
allele num: 63396
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6056
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11304
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16384
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8478
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.377133e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

QD
type: SiteQuality
SIO_000300: 1.091e1

FS
type: SiteQuality
SIO_000300: 2.807e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.46e-1

MQ
type: SiteQuality
SIO_000300: 5.95e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.63e0

MQRankSum
type: SiteQuality
SIO_000300: 2.92e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.225e0

GenotypeQuality
all individuals: 322
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 424
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4914
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 417
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4082
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44281
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1067
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 406
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 612
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16374
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.07641196013289e-4
allele num: 9632
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63350
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.85112409275978e-5
allele num: 11298
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8464
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6062
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.64e0

VQSLOD
type: SiteQuality
SIO_000300: -8.087e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.4e-2

DP
type: SiteQuality
SIO_000300: 1.37599e6

QD
type: SiteQuality
SIO_000300: 1.152e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

FS
type: SiteQuality
SIO_000300: 1.2811e1

GenotypeQuality
all individuals: 1027
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4840
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 442
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1005
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 829
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1276
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 743
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1289
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 385
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 124
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9590
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11244
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16328
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6038
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.587956934607933e-5
allele num: 62974
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8404
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

DP
type: SiteQuality
SIO_000300: 1.357731e6

FS
type: SiteQuality
SIO_000300: 3.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.79e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.07e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -3.4e-2

QD
type: SiteQuality
SIO_000300: 1.19e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.23e-1

GenotypeQuality
all individuals: 809
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 934
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 433
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1288
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 559
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 739
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 313
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4695
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1024
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41713
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6026
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8400
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11244
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9596
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16334
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.587906504065041e-5
allele num: 62976
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.314e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.26e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.38e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.38e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

FS
type: SiteQuality
SIO_000300: 1.582e0

MQRankSum
type: SiteQuality
SIO_000300: -7.2e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.65e-1

DP
type: SiteQuality
SIO_000300: 1.357235e6

GenotypeQuality
all individuals: 4448
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 405
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40412
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 382
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 476
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 507
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1711
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1096
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 409
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.599897606553181e-5
allele num: 62504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5964
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8326
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16298
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9554
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11164
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.329236e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.833e0

MQRankSum
type: SiteQuality
SIO_000300: 1.28e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.7e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.13e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.63e0

FS
type: SiteQuality
SIO_000300: 1.393e0

QD
type: SiteQuality
SIO_000300: 1.274e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

GenotypeQuality
all individuals: 3760
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3795
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9096
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 430
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2392
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31804
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 381
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 585
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 871
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 818
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 966
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 1.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8124
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5858
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61366
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10954
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9360
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.19041723412158e-5
allele num: 16154
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.236292e6

QD
type: SiteQuality
SIO_000300: 1.397e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.469e0

MQRankSum
type: SiteQuality
SIO_000300: 9.409999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.054e0

VQSLOD
type: SiteQuality
SIO_000300: 7.87e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.59e-1

GenotypeQuality
all individuals: 3731
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 915
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 491
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5205
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25205
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4431
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10234
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1436
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 806
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1029
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1375
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 496
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 380
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.657715005636231e-5
allele num: 60324
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16064
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10768
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7990
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 812
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9160
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5784
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

MQ
type: SiteQuality
SIO_000300: 5.967e1

VQSLOD
type: SiteQuality
SIO_000300: 2.07e0

QD
type: SiteQuality
SIO_000300: 1.814e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.33e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.892e0

DP
type: SiteQuality
SIO_000300: 1.176222e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.82e-1

GenotypeQuality
all individuals: 1153
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6193
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2763
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2510
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17989
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4887
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 380
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 10258
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5095
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 604
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1259
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 430
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2495
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7818
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.46431951542684e-5
allele num: 10566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59044
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8942
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15870
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.134611e6

MQ
type: SiteQuality
SIO_000300: 5.889e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.096e0

MQRankSum
type: SiteQuality
SIO_000300: -6.56e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.4e-3

QD
type: SiteQuality
SIO_000300: 8.98e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.43e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.9e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.427e0

GenotypeQuality
all individuals: 5074
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2173
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 917
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4862
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18668
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6137
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 406
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 700
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 587
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2392
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 101
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2732
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 381
bin: 9.75e1
variant carriers: 2

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.405994550408719e-5
allele num: 58720
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8900
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 788
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15794
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.287001287001287e-4
allele num: 7770
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10458
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.773e0

DP
type: SiteQuality
SIO_000300: 1.132334e6

QD
type: SiteQuality
SIO_000300: 1.137e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.18e0

FS
type: SiteQuality
SIO_000300: 1.125e0

MQRankSum
type: SiteQuality
SIO_000300: -9.7e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.89e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.5e-2

GenotypeQuality
all individuals: 2037
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5052
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1333
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6084
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1151
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 627
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 411
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4748
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2462
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 692
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 383
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 595
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8950
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.493070058857034e-5
allele num: 10534
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5640
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.69434090138936e-5
allele num: 59020
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15822
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.283038234539389e-4
allele num: 7794
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.134525e6

QD
type: SiteQuality
SIO_000300: 9.949999999999999e0

FS
type: SiteQuality
SIO_000300: 1.56e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.11e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.2e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.237e0

MQRankSum
type: SiteQuality
SIO_000300: 2.17e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.41e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.12e-1

GenotypeQuality
all individuals: 627
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6084
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2037
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 595
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10842
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 383
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1333
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 239
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5052
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 692
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2462
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2455
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4748
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7794
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15822
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8950
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5640
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10534
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.388681802778719e-5
allele num: 59020
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.12e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.237e0

DP
type: SiteQuality
SIO_000300: 1.134525e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.11e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.2e-3

FS
type: SiteQuality
SIO_000300: 1.56e1

MQRankSum
type: SiteQuality
SIO_000300: 2.17e-1

QD
type: SiteQuality
SIO_000300: 9.949999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.41e-1

GenotypeQuality
all individuals: 2356
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10787
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2399
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1452
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4822
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1175
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20175
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 382
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2099
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 620
bin: 1.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5606
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.121579183490354e-4
allele num: 8916
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7754
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.702185606318513e-5
allele num: 58748
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10466
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.335529650278763e-5
allele num: 15784
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.63e-1

QD
type: SiteQuality
SIO_000300: 1.125e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.4e-3

FS
type: SiteQuality
SIO_000300: 4.11e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.78e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.57e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.0e-1

DP
type: SiteQuality
SIO_000300: 1.12775e6

MQ
type: SiteQuality
SIO_000300: 5.942e1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.6e-2

GenotypeQuality
all individuals: 10852
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 732
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 548
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6135
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 493
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 408
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2042
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 380
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2258
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20768
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2385
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8928
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10470
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7756
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.699986400108799e-5
allele num: 58824
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5634
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15820
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.95e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.395e-1

FS
type: SiteQuality
SIO_000300: 8.120000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.317e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.69e-1

DP
type: SiteQuality
SIO_000300: 1.127351e6

ClippingRankSum
type: SiteQuality
SIO_000300: 4.92e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.2e0

GenotypeQuality
all individuals: 1154
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4662
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21750
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4997
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 406
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 581
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 465
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2054
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 614
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10967
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1074
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 380
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 798
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10474
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5646
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58876
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15824
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.118318049653321e-4
allele num: 8942
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7760
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.497e0

MQRankSum
type: SiteQuality
SIO_000300: 1.74e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.72e0

DP
type: SiteQuality
SIO_000300: 1.126654e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.84e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.794e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-3

QD
type: SiteQuality
SIO_000300: 1.091e1

VQSLOD
type: SiteQuality
SIO_000300: 1.7e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 409
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5980
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4556
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1857
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1894
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 579
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 883
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 380
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 232
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2396
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 492
bin: 1.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58898
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.287332646755922e-4
allele num: 7768
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5646
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8970
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15822
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10460
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.908e1

VQSLOD
type: SiteQuality
SIO_000300: 2.53e0

DP
type: SiteQuality
SIO_000300: 1.129155e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.04e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.8e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.9e-3

MQRankSum
type: SiteQuality
SIO_000300: 7.05e-1

QD
type: SiteQuality
SIO_000300: 3.459e1

GenotypeQuality
all individuals: 6075
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 632
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4574
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1634
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 599
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1006
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 450
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2169
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2359
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20931
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 420
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 381
bin: 9.75e1
variant carriers: 2

African
type: Population
allele count: 2
allele frequency: 2.232142857142857e-4
allele num: 8960
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7774
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58972
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15774
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10446
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5632
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.81e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-3

FS
type: SiteQuality
SIO_000300: 5.747e0

DP
type: SiteQuality
SIO_000300: 1.124908e6

MQRankSum
type: SiteQuality
SIO_000300: 1.93e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.931e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.65e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.133e0

QD
type: SiteQuality
SIO_000300: 8.07e0

GenotypeQuality
all individuals: 4931
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1025
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2130
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 409
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 623
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 471
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1889
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10811
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4505
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 599
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 745
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6040
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58794
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8982
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7754
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10414
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.904278278532436e-4
allele num: 15754
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.05e-1

DP
type: SiteQuality
SIO_000300: 1.127924e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.56e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.8e-3

QD
type: SiteQuality
SIO_000300: 9.779999999999999e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.38e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.05e-1

GenotypeQuality
all individuals: 590
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2861
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1094
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2281
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3369
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 479
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1108
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 294
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34610
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 492
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 385
bin: 9.75e1
variant carriers: 5

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60496
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15654
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.14638334406525e-4
allele num: 9318
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.231527093596059e-4
allele num: 8120
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.856665428889714e-4
allele num: 10772
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5830
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 8.09e0

VQSLOD
type: SiteQuality
SIO_000300: 1.89e0

MQ
type: SiteQuality
SIO_000300: 6.042e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.83e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.95e-1

FS
type: SiteQuality
SIO_000300: 2.408e0

DP
type: SiteQuality
SIO_000300: 1.254255e6

GenotypeQuality
all individuals: 203
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 479
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2281
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 646
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34610
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2861
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 590
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1094
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 385
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2832
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 492
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10772
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15654
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8120
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5830
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9318
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.653001851362074e-5
allele num: 60496
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.408e0

QD
type: SiteQuality
SIO_000300: 8.09e0

MQ
type: SiteQuality
SIO_000300: 6.042e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.95e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.83e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.89e0

DP
type: SiteQuality
SIO_000300: 1.254255e6

GenotypeQuality
all individuals: 466
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 428
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1566
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1486
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 249
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3343
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2677
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 320
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7454
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1164
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33087
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 375
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 597
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9298
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5798
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10772
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8090
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.659420530350801e-5
allele num: 60262
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15586
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.263106e6

MQRankSum
type: SiteQuality
SIO_000300: -5.82e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.36e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.56e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.58e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.824e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-3

FS
type: SiteQuality
SIO_000300: 1.741e0

QD
type: SiteQuality
SIO_000300: 2.909e1

GenotypeQuality
all individuals: 1817
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 610
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 536
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 378
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 144
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 286
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 551
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42502
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 757
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5069
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 649
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1539
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3487
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15806
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9664
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11160
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6064
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.603643477981975e-5
allele num: 62358
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8416
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.53e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.185e0

QD
type: SiteQuality
SIO_000300: 1.44e1

FS
type: SiteQuality
SIO_000300: 3.108e0

VQSLOD
type: SiteQuality
SIO_000300: 1.83e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.334513e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.428e0

GenotypeQuality
all individuals: 3646
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 576
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 378
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 690
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1223
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 560
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44207
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 556
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 775
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4303
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1380
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11222
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62884
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.313928526329082e-5
allele num: 15838
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9738
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8440
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6154
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.3551e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.08e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.46e0

VQSLOD
type: SiteQuality
SIO_000300: -3.45e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

QD
type: SiteQuality
SIO_000300: 5.17e0

FS
type: SiteQuality
SIO_000300: 1.67e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.64e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.273e0

GenotypeQuality
all individuals: 33
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 474
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 685
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 378
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 848
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46624
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 492
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3244
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3821
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 917
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 553
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 575
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 823
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63668
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6276
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9866
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.292474200855777e-5
allele num: 15892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11326
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.64e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.179e0

DP
type: SiteQuality
SIO_000300: 1.384042e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.0e0

QD
type: SiteQuality
SIO_000300: 1.221e1

VQSLOD
type: SiteQuality
SIO_000300: -1.35e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.282e0

FS
type: SiteQuality
SIO_000300: 1.721e0

GenotypeQuality
all individuals: 147
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 477
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47141
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3067
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 847
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 793
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 586
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 473
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 380
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 653
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6300
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9886
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11340
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.701015419330575e-5
allele num: 63816
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15928
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.323e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

VQSLOD
type: SiteQuality
SIO_000300: 5.5e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.59e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.257e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.52e-1

DP
type: SiteQuality
SIO_000300: 1.388992e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 8.3e-2

GenotypeQuality
all individuals: 265
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 432
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 452
bin: 9.75e1
variant carriers: 74

GenotypeQuality
all individuals: 84
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47958
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 291
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 531
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 391
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 859
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2765
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 4
allele frequency: 6.297229219143577e-4
allele num: 6352
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.25344697919278e-4
allele num: 15956
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.019323671497584e-4
allele num: 9936
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.791981712678038e-5
allele num: 11374
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8540
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 65
allele frequency: 1.01343977049487e-3
allele num: 64138
num of homozygotes: 1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.27e0

FS
type: SiteQuality
SIO_000300: 1.262e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.6e-3

QD
type: SiteQuality
SIO_000300: 1.439e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.424e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.88e-1

DP
type: SiteQuality
SIO_000300: 1.399156e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 317
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 876
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50150
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 623
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2012
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4161
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11436
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.904912836767037e-5
allele num: 10096
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15980
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.539693293096015e-5
allele num: 64948
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6428
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.669e1

MQRankSum
type: SiteQuality
SIO_000300: 5.1e-2

FS
type: SiteQuality
SIO_000300: 5.47e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.9e-2

DP
type: SiteQuality
SIO_000300: 1.425804e6

VQSLOD
type: SiteQuality
SIO_000300: 2.15e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.32e0

MQ
type: SiteQuality
SIO_000300: 5.933e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.73e0

GenotypeQuality
all individuals: 4162
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 867
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 631
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1996
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50296
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11440
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.620360388110273e-5
allele num: 64930
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15972
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8562
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.979805979014057e-4
allele num: 10102
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6438
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.426816e6

VQSLOD
type: SiteQuality
SIO_000300: 3.75e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.94e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

QD
type: SiteQuality
SIO_000300: 9.52e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.946e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.14e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.02e0

GenotypeQuality
all individuals: 110
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 367
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 368
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2426
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 843
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49743
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 374
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 593
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 378
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 250
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11408
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64760
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15846
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6396
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.169317118802619e-4
allele num: 8552
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10064
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

FS
type: SiteQuality
SIO_000300: 4.591e0

VQSLOD
type: SiteQuality
SIO_000300: -4.186e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.18e0

QD
type: SiteQuality
SIO_000300: 7.67e0

MQRankSum
type: SiteQuality
SIO_000300: -3.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.44e-1

DP
type: SiteQuality
SIO_000300: 1.419997e6

MQ
type: SiteQuality
SIO_000300: 5.948e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.54e-1

GenotypeQuality
all individuals: 74
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 385
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 399
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4046
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49255
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 477
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 36
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2487
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 585
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 378
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 110
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.092050338579512e-5
allele num: 64682
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.954210631096954e-5
allele num: 10046
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15824
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6388
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.55e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.185e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.62e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

FS
type: SiteQuality
SIO_000300: 3.902e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.71e-1

QD
type: SiteQuality
SIO_000300: 1.23e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.419013e6

GenotypeQuality
all individuals: 577
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 381
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 409
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 291
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49439
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2597
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10048
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11406
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.679457182966776e-4
allele num: 8548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.546551190844417e-5
allele num: 64660
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15798
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6384
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.629e-1

MQ
type: SiteQuality
SIO_000300: 5.923e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.0e-2

DP
type: SiteQuality
SIO_000300: 1.417884e6

QD
type: SiteQuality
SIO_000300: 8.300000000000001e0

MQRankSum
type: SiteQuality
SIO_000300: -1.06e-1

FS
type: SiteQuality
SIO_000300: 4.342e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.389e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.07e-1

GenotypeQuality
all individuals: 450
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 281
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3974
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 396
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 576
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 378
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 106
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2827
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6374
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64550
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10026
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11384
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15744
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.17096018735363e-4
allele num: 8540
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.82e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.45e-1

FS
type: SiteQuality
SIO_000300: 1.705e0

VQSLOD
type: SiteQuality
SIO_000300: 2.43e0

MQRankSum
type: SiteQuality
SIO_000300: 2.82e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 9.970000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.809e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

DP
type: SiteQuality
SIO_000300: 1.412829e6

GenotypeQuality
all individuals: 418
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 569
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 826
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 378
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 287
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 479
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3971
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49072
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.17096018735363e-4
allele num: 8540
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15710
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11384
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10014
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64482
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6368
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.006e1

DP
type: SiteQuality
SIO_000300: 1.410051e6

MQ
type: SiteQuality
SIO_000300: 5.907e1

VQSLOD
type: SiteQuality
SIO_000300: 4.67e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.56e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.0e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 9.73e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.52e0

GenotypeQuality
all individuals: 105
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 313
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 378
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 296
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3791
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47415
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 459
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 366
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 535
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 785
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15314
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8492
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11336
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9914
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.564112991522508e-5
allele num: 63934
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6314
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.96e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.899999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 5.23e-1

DP
type: SiteQuality
SIO_000300: 1.388997e6

QD
type: SiteQuality
SIO_000300: 9.74e0

MQRankSum
type: SiteQuality
SIO_000300: -2.3e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.44e-1

GenotypeQuality
all individuals: 226
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 408
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 46516
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 806
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3713
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 424
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 228
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4469
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 720
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 554
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 521
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 402
bin: 9.75e1
variant carriers: 25

GenotypeQuality
all individuals: 259
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15152
num of homozygotes: 0

African
type: Population
allele count: 25
allele frequency: 2.533441426834212e-3
allele num: 9868
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8478
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6284
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.832361773538245e-5
allele num: 11322
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63764
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.58e0

FS
type: SiteQuality
SIO_000300: 5.86e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.8e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.380131e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.13e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -9.1e-2

QD
type: SiteQuality
SIO_000300: 1.005e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.77e-1

GenotypeQuality
all individuals: 383
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 62
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4931
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46337
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 780
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 881
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 521
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3662
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 745
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 259
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 433
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11310
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9834
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8448
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6270
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.331556503198294e-4
allele num: 15008
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.269e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.2e-2

FS
type: SiteQuality
SIO_000300: 6.01e-1

DP
type: SiteQuality
SIO_000300: 1.371573e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.62e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.63e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.34e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.58e-1

GenotypeQuality
all individuals: 378
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1011
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3582
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 501
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 490
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 869
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5650
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 491
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 710
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45221
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6240
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.873114463176575e-5
allele num: 11270
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14718
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8412
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9778
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63118
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 4.5e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.5e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.886e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.557e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

MQRankSum
type: SiteQuality
SIO_000300: -9.340000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.358079e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.5e0

GenotypeQuality
all individuals: 341
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 378
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 58
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 547
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6357
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 552
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43887
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3519
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1151
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1011
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 700
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9716
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8384
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.591343093570974e-5
allele num: 62840
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6216
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14466
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11236
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.172e0

MQRankSum
type: SiteQuality
SIO_000300: 4.37e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.45e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

VQSLOD
type: SiteQuality
SIO_000300: -5.97e-2

DP
type: SiteQuality
SIO_000300: 1.344504e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.552e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 9.43e0

FS
type: SiteQuality
SIO_000300: 3.003e0

GenotypeQuality
all individuals: 1286
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43046
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6957
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3441
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1163
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 608
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 691
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 378
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 318
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 486
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 431
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.390628735357399e-4
allele num: 8366
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14274
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11178
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6190
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62520
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.19e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.004e0

DP
type: SiteQuality
SIO_000300: 1.332348e6

FS
type: SiteQuality
SIO_000300: 1.066e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 4.29e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.12e0

QD
type: SiteQuality
SIO_000300: 1.004e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.27e0

GenotypeQuality
all individuals: 42066
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7602
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1421
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 470
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3401
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 365
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 669
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 377
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 332
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.992805755395684e-5
allele num: 11120
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14102
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8330
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62184
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6164
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9588
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.09e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.26e0

VQSLOD
type: SiteQuality
SIO_000300: -1.387e0

DP
type: SiteQuality
SIO_000300: 1.319031e6

QD
type: SiteQuality
SIO_000300: 1.072e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

FS
type: SiteQuality
SIO_000300: 1.1747e1

MQRankSum
type: SiteQuality
SIO_000300: 1.26e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.967e0

GenotypeQuality
all individuals: 628
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 367
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39617
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 325
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1783
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3251
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 545
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 378
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 386
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 446
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.81653042688465e-4
allele num: 11010
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9430
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13550
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6092
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8234
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.632226683641824e-5
allele num: 61266
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.247e0

QD
type: SiteQuality
SIO_000300: 7.86e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

FS
type: SiteQuality
SIO_000300: 1.4597e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.287639e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.076e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.7e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.12e-1

GenotypeQuality
all individuals: 500
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3098
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 423
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 380
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 95
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1869
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1982
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37718
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 954
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 599
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 228
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9897
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.830161054172767e-4
allele num: 10928
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13340
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9368
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6038
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8178
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.573325445342799e-5
allele num: 60852
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.79e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.319e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.1e-1

QD
type: SiteQuality
SIO_000300: 1.213e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e-1

MQ
type: SiteQuality
SIO_000300: 5.93e1

DP
type: SiteQuality
SIO_000300: 1.271138e6

VQSLOD
type: SiteQuality
SIO_000300: 1.33e0

FS
type: SiteQuality
SIO_000300: 5.578e0

GenotypeQuality
all individuals: 376
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 321
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 562
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 617
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2455
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2882
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12374
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 368
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2446
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35076
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 394
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 374
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 221
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59734
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12814
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9190
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5952
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 772
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.319664492078285e-5
allele num: 10730
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8006
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.33e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

DP
type: SiteQuality
SIO_000300: 1.21987e6

VQSLOD
type: SiteQuality
SIO_000300: -1.406e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.79e0

FS
type: SiteQuality
SIO_000300: 5.643e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.4e-2

MQ
type: SiteQuality
SIO_000300: 5.678e1

QD
type: SiteQuality
SIO_000300: 9.02e0

GenotypeQuality
all individuals: 324
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 472
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4278
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 432
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4711
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18394
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 642
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2298
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 712
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 650
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1109
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 96
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 373
bin: 9.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56492
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7420
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 736
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10116
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.39e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.221e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.74e-1

FS
type: SiteQuality
SIO_000300: 4.589e0

DP
type: SiteQuality
SIO_000300: 1.064725e6

MQRankSum
type: SiteQuality
SIO_000300: -4.56e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.804e0

QD
type: SiteQuality
SIO_000300: 1.41e0

GenotypeQuality
all individuals: 599
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 298
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 522
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1585
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17848
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2970
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 376
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 881
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 578
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 383
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7230
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8414
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.75330396475771e-4
allele num: 10896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9894
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 718
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55028
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.4e-3

DP
type: SiteQuality
SIO_000300: 9.95749e5

MQRankSum
type: SiteQuality
SIO_000300: 2.82e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.41e-1

FS
type: SiteQuality
SIO_000300: 3.181e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 4.3e0

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.98e-1

GenotypeQuality
all individuals: 1047
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 800
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1821
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20722
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3514
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 918
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 376
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1260
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 355
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10586
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9808
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.516531205178184e-5
allele num: 54382
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 712
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7144
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8310
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5440
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.557e5

ClippingRankSum
type: SiteQuality
SIO_000300: 1.52e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 9.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.529e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 5.867e0

MQRankSum
type: SiteQuality
SIO_000300: -1.52e-1

QD
type: SiteQuality
SIO_000300: 1.384e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.8e-1

GenotypeQuality
all individuals: 259
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4451
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1365
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 373
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 590
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20884
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 979
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1016
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9879
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 308
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5234
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9536
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8052
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6856
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 680
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.809523809523809e-5
allele num: 52500
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9716
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.4e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.314e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.38e0

DP
type: SiteQuality
SIO_000300: 8.83834e5

MQRankSum
type: SiteQuality
SIO_000300: 1.07e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.262e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -4.389e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.2e0

GenotypeQuality
all individuals: 86
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1122
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 952
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1019
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2703
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1231
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21064
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1387
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 4407
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 516
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 189
bin: 8.25e1
variant carriers: 4

GenotypeQuality
all individuals: 9670
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 365
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 274
bin: 7.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 1.160182535385567e-4
allele num: 51716
num of homozygotes: 0

Latino
type: Population
allele count: 7
allele frequency: 7.4754378470739e-4
allele num: 9364
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5178
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6712
num of homozygotes: 0

African
type: Population
allele count: 132
allele frequency: 1.671732522796352e-2
allele num: 7896
num of homozygotes: 4

Other
type: Population
allele count: 2
allele frequency: 3.003003003003003e-3
allele num: 666
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.121340687314383e-4
allele num: 9428
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 8.73396e5

ClippingRankSum
type: SiteQuality
SIO_000300: -3.8e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.892e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.42e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.87e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.18e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.1e-2

QD
type: SiteQuality
SIO_000300: 1.396e1

GenotypeQuality
all individuals: 1583
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 858
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 523
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1343
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20603
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6389
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 377
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 404
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8546
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4975
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1590
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7822
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9270
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 51050
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9184
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.533742331288344e-3
allele num: 652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5112
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.299999999999999e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.386e0

MQRankSum
type: SiteQuality
SIO_000300: 3.82e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.555e0

DP
type: SiteQuality
SIO_000300: 8.47409e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.531e0

QD
type: SiteQuality
SIO_000300: 6.81e0

GenotypeQuality
all individuals: 415
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6407
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7600
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20677
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1514
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 432
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8602
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 830
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1387
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1628
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 377
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 83
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 662
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.520218911523259e-4
allele num: 6578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7772
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9218
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5104
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9092
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.37e0

MQRankSum
type: SiteQuality
SIO_000300: 8.51e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.004e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.45e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.36e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.299999999999999e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 4.7e-1

DP
type: SiteQuality
SIO_000300: 8.40096e5

GenotypeQuality
all individuals: 2162
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2099
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5690
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18904
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8863
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 483
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2519
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 376
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 188
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2050
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6516
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 730
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 646
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8472
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6268
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7522
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8942
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4922
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.03533338760889e-5
allele num: 49132
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.592e0

QD
type: SiteQuality
SIO_000300: 1.225e1

VQSLOD
type: SiteQuality
SIO_000300: 1.1e-2

MQRankSum
type: SiteQuality
SIO_000300: 7.84e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.54e-1

MQ
type: SiteQuality
SIO_000300: 5.901e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.67e-1

DP
type: SiteQuality
SIO_000300: 8.06525e5

GenotypeQuality
all individuals: 757
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3702
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 375
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2830
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6438
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1361
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2757
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8885
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2889
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5832
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 5.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7998
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5976
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4746
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7222
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.113807389870635e-5
allele num: 47308
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.54e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.1e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.15e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.437e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.11e0

VQSLOD
type: SiteQuality
SIO_000300: 9.81e-1

QD
type: SiteQuality
SIO_000300: 1.691e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 7.92803e5

GenotypeQuality
all individuals: 5875
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2817
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3548
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2249
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6828
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8887
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6418
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 687
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1859
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 377
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 93
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.449465332873404e-4
allele num: 5798
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4640
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7098
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7738
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 590
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46148
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8340
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.22e-1

MQ
type: SiteQuality
SIO_000300: 5.914e1

FS
type: SiteQuality
SIO_000300: 2.079e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.18e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.83e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.718e0

DP
type: SiteQuality
SIO_000300: 7.90692e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.7e-1

QD
type: SiteQuality
SIO_000300: 1.118e1

VQSLOD
type: SiteQuality
SIO_000300: 4.17e-1

GenotypeQuality
all individuals: 2007
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3555
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13994
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2823
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6415
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2997
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6523
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5874
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2255
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 638
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 590
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5752
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4672
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8330
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7104
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7774
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.164127423822715e-5
allele num: 46208
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.51e0

MQRankSum
type: SiteQuality
SIO_000300: -6.56e-1

MQ
type: SiteQuality
SIO_000300: 5.788e1

VQSLOD
type: SiteQuality
SIO_000300: -1.742e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.389e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.21e-2

DP
type: SiteQuality
SIO_000300: 7.91317e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.12e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.01e-1

GenotypeQuality
all individuals: 21
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 426
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3429
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 348
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 138
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1022
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 94
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 146
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.432664756446991e-3
allele num: 698
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.65e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.31e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.852e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.35e-1

DP
type: SiteQuality
SIO_000300: 7.2819e4

QD
type: SiteQuality
SIO_000300: 6.95e0

GenotypeQuality
all individuals: 33
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7159
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 552
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 968
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1114
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 370
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 152
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 160
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 98
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1176
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.89e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

QD
type: SiteQuality
SIO_000300: 5.94e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.16e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.29e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.538e0

DP
type: SiteQuality
SIO_000300: 7.8727e4

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 201
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 444
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 85
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1043
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 526
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4396
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 154
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 90
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 342
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.340277777777778e-4
allele num: 2304
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.545e0

VQSLOD
type: SiteQuality
SIO_000300: -3.142e0

QD
type: SiteQuality
SIO_000300: 1.433e1

MQ
type: SiteQuality
SIO_000300: 5.923e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.255e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.52e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.13e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.9e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.17e0

DP
type: SiteQuality
SIO_000300: 9.8453e4

GenotypeQuality
all individuals: 3
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 298
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 213
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1005
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 533
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 654
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 24
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 94
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.378283712784588e-4
allele num: 2284
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 154
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 336
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 6.852444038373687e-4
allele num: 4378
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -9.592000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.34e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.17e-1

MQ
type: SiteQuality
SIO_000300: 5.801e1

DP
type: SiteQuality
SIO_000300: 9.721e4

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.92e-2

FS
type: SiteQuality
SIO_000300: 3.385e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.74e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.87e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.06e-1

GenotypeQuality
all individuals: 22
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 315
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3554
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 435
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 10
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 670
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 266
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 498
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 90
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 160
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2178
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.355157795572303e-4
allele num: 4246
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.681e0

VQSLOD
type: SiteQuality
SIO_000300: -1.694e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.66e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.71e-1

DP
type: SiteQuality
SIO_000300: 9.204e4

MQRankSum
type: SiteQuality
SIO_000300: 5.97e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 5.14e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.05e-1

GenotypeQuality
all individuals: 234
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3205
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 670
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 937
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 234
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 160
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4332
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 90
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2222
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 260
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

DP
type: SiteQuality
SIO_000300: 9.2442e4

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.58e-1

QD
type: SiteQuality
SIO_000300: 7.83e0

VQSLOD
type: SiteQuality
SIO_000300: -1.067e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.58e-1

GenotypeQuality
all individuals: 591
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 443
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3563
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 559
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 29
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 158
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4690
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 100
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.187604690117253e-4
allele num: 2388
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -9.009e-1

FS
type: SiteQuality
SIO_000300: 1.252e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.68e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.39e-1

DP
type: SiteQuality
SIO_000300: 9.8507e4

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.41e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.27e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.72e-1

QD
type: SiteQuality
SIO_000300: 1.464e1

GenotypeQuality
all individuals: 70
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2754
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1739
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3655
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 137
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 18
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 1.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 158
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 166
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.90625e-4
allele num: 2560
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 536
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 1.399440223910436e-3
allele num: 5002
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 104
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.39e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.482e0

DP
type: SiteQuality
SIO_000300: 1.04949e5

VQSLOD
type: SiteQuality
SIO_000300: -2.827e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.9e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.42e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

MQRankSum
type: SiteQuality
SIO_000300: 4.03e-1

QD
type: SiteQuality
SIO_000300: 1.051e1

GenotypeQuality
all individuals: 3024
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1361
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 351
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 180
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3216
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.482799525504152e-4
allele num: 6744
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 552
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 124
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.229e1

MQRankSum
type: SiteQuality
SIO_000300: -8.69e-1

DP
type: SiteQuality
SIO_000300: 1.402e5

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.85e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.15e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.67e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.737e0

MQ
type: SiteQuality
SIO_000300: 5.883e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.15e-1

GenotypeQuality
all individuals: 94
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4289
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 55
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6950
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 124
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 182
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.003003003003003e-4
allele num: 3330
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.669999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.47e0

DP
type: SiteQuality
SIO_000300: 1.45888e5

VQSLOD
type: SiteQuality
SIO_000300: 7.58e-1

FS
type: SiteQuality
SIO_000300: 9.91e-1

QD
type: SiteQuality
SIO_000300: 1.06e1

MQRankSum
type: SiteQuality
SIO_000300: 5.98e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.24e0

MQ
type: SiteQuality
SIO_000300: 5.95e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.66e-2

GenotypeQuality
all individuals: 59
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 370
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5178
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 40
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3289
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 1.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 558
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 240
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.374759417102007e-4
allele num: 7274
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 136
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.97e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.312e0

MQRankSum
type: SiteQuality
SIO_000300: 5.71e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 9.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.59e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.88e-2

DP
type: SiteQuality
SIO_000300: 1.55542e5

GenotypeQuality
all individuals: 36
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 383
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 256
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3498
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.370614035087719e-4
allele num: 7296
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 140
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 558
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.5e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.81e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.495e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.77e-2

MQRankSum
type: SiteQuality
SIO_000300: -2.222e0

MQ
type: SiteQuality
SIO_000300: 5.912e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.17e0

VQSLOD
type: SiteQuality
SIO_000300: -2.253e0

QD
type: SiteQuality
SIO_000300: 1.255e1

DP
type: SiteQuality
SIO_000300: 1.56074e5

GenotypeQuality
all individuals: 4
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2309
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 1
allele frequency: 1.584283903675539e-4
allele num: 6312
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 112
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 192
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 176
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 548
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3164
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 180
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.12e-2

DP
type: SiteQuality
SIO_000300: 1.2455e5

QD
type: SiteQuality
SIO_000300: 9.449999999999999e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.15e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.08e-1

FS
type: SiteQuality
SIO_000300: 4.483e0

VQSLOD
type: SiteQuality
SIO_000300: -1.091e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.19e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.340000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.383e1