17-43333274-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43333274
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 43333274
    reference: chr 17
allele count: 1
allele frequency: 8.263233568560049e-6
allele num: 121018
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000331532
  ensembl transcript: ENST00000331780
  gene symbol: SPATA32
  hgvsc: ENST00000331780.4:c.275A>T
  hgvsp: ENSP00000331532.4:p.Asn92Ile
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588160
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588160.1:n.195+689T>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467901
  ensembl transcript: ENST00000588866
  gene symbol: SPATA32
  hgvsc: ENST00000588866.1:c.*182A>T
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000590100
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000590100.1:n.68+7904T>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588504
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588504.1:n.68+7904T>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588698
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588698.1:n.123+689T>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000442724
  ensembl transcript: ENST00000543122
  gene symbol: SPATA32
  hgvsc: ENST00000543122.1:c.212A>T
  hgvsp: ENSP00000442724.1:p.Asn71Ile
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000585346
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000585346.1:n.134+689T>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467344
  ensembl transcript: ENST00000586359
  gene symbol: SPATA32
  hgvsc: ENST00000586359.1:c.*793A>T
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000592422
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000592422.1:n.230+689T>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000591263
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000591263.1:n.163+689T>A
  variant of: http://identifiers.org/hgnc/44359
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24129
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13384
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12854
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5281
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2756
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn92Ile
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
reference allele: T
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

17-43333283-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43333283
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 43333283
    reference: chr 17
allele count: 5
allele frequency: 4.133051183705859e-5
allele num: 120976
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000590100
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000590100.1:n.68+7913G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588160
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588160.1:n.195+698G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000331532
  ensembl transcript: ENST00000331780
  gene symbol: SPATA32
  hgvsc: ENST00000331780.4:c.266C>T
  hgvsp: ENSP00000331532.4:p.Thr89Met
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000442724
  ensembl transcript: ENST00000543122
  gene symbol: SPATA32
  hgvsc: ENST00000543122.1:c.203C>T
  hgvsp: ENSP00000442724.1:p.Thr68Met
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467344
  ensembl transcript: ENST00000586359
  gene symbol: SPATA32
  hgvsc: ENST00000586359.1:c.*784C>T
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588698
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588698.1:n.123+698G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588504
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588504.1:n.68+7913G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467901
  ensembl transcript: ENST00000588866
  gene symbol: SPATA32
  hgvsc: ENST00000588866.1:c.*173C>T
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000592422
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000592422.1:n.230+698G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000585346
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000585346.1:n.134+698G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000591263
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000591263.1:n.163+698G>A
  variant of: http://identifiers.org/hgnc/44359
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12846
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2755
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13388
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24111
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5280
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr89Met
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum

17-43333293-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43333293
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 43333293
    reference: chr 17
allele count: 1
allele frequency: 8.270751315049459e-6
allele num: 120908
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000590100
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000590100.1:n.68+7923C>G
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588504
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588504.1:n.68+7923C>G
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000331532
  ensembl transcript: ENST00000331780
  gene symbol: SPATA32
  hgvsc: ENST00000331780.4:c.256G>C
  hgvsp: ENSP00000331532.4:p.Glu86Gln
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000585346
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000585346.1:n.134+708C>G
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467901
  ensembl transcript: ENST00000588866
  gene symbol: SPATA32
  hgvsc: ENST00000588866.1:c.*163G>C
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000442724
  ensembl transcript: ENST00000543122
  gene symbol: SPATA32
  hgvsc: ENST00000543122.1:c.193G>C
  hgvsp: ENSP00000442724.1:p.Glu65Gln
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467344
  ensembl transcript: ENST00000586359
  gene symbol: SPATA32
  hgvsc: ENST00000586359.1:c.*774G>C
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000592422
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000592422.1:n.230+708C>G
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588160
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588160.1:n.195+708C>G
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000591263
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000591263.1:n.163+708C>G
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588698
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588698.1:n.123+708C>G
  variant of: http://identifiers.org/hgnc/44359
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2755
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12839
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5282
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13331
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24105
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu86Gln
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: DP

17-43333297-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43333297
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 43333297
    reference: chr 17
allele count: 1
allele frequency: 8.271982794275789e-6
allele num: 120890
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000590100
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000590100.1:n.68+7927T>C
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588504
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588504.1:n.68+7927T>C
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000585346
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000585346.1:n.134+712T>C
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467901
  ensembl transcript: ENST00000588866
  gene symbol: SPATA32
  hgvsc: ENST00000588866.1:c.*159A>G
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000591263
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000591263.1:n.163+712T>C
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588698
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588698.1:n.123+712T>C
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467344
  ensembl transcript: ENST00000586359
  gene symbol: SPATA32
  hgvsc: ENST00000586359.1:c.*770A>G
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588160
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588160.1:n.195+712T>C
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000331532
  ensembl transcript: ENST00000331780
  gene symbol: SPATA32
  hgvsc: ENST00000331780.4:c.252A>G
  hgvsp: ENST00000331780.4:c.252A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000442724
  ensembl transcript: ENST00000543122
  gene symbol: SPATA32
  hgvsc: ENST00000543122.1:c.189A>G
  hgvsp: ENST00000543122.1:c.189A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000592422
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000592422.1:n.230+712T>C
  variant of: http://identifiers.org/hgnc/44359
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13313
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24090
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2755
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12836
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5281
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu84Glu
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: African
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQ

17-43333301-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43333301
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 43333301
    reference: chr 17
allele count: 3
allele frequency: 2.481964392084188e-5
allele num: 120872
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588504
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588504.1:n.68+7931A>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588160
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588160.1:n.195+716A>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000585346
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000585346.1:n.134+716A>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467901
  ensembl transcript: ENST00000588866
  gene symbol: SPATA32
  hgvsc: ENST00000588866.1:c.*155T>A
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000592422
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000592422.1:n.230+716A>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000442724
  ensembl transcript: ENST00000543122
  gene symbol: SPATA32
  hgvsc: ENST00000543122.1:c.185T>A
  hgvsp: ENSP00000442724.1:p.Leu62His
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467344
  ensembl transcript: ENST00000586359
  gene symbol: SPATA32
  hgvsc: ENST00000586359.1:c.*766T>A
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000331532
  ensembl transcript: ENST00000331780
  gene symbol: SPATA32
  hgvsc: ENST00000331780.4:c.248T>A
  hgvsp: ENSP00000331532.4:p.Leu83His
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588698
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588698.1:n.123+716A>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000591263
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000591263.1:n.163+716A>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000590100
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000590100.1:n.68+7931A>T
  variant of: http://identifiers.org/hgnc/44359
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12835
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5281
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13295
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24091
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2756
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu83His
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD

17-43333302-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43333302
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 43333302
    reference: chr 17
allele count: 2
allele frequency: 1.655026314918407e-5
allele num: 120844
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588698
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588698.1:n.123+717G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467901
  ensembl transcript: ENST00000588866
  gene symbol: SPATA32
  hgvsc: ENST00000588866.1:c.*154C>T
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000592422
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000592422.1:n.230+717G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000585346
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000585346.1:n.134+717G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467344
  ensembl transcript: ENST00000586359
  gene symbol: SPATA32
  hgvsc: ENST00000586359.1:c.*765C>T
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588160
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588160.1:n.195+717G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000442724
  ensembl transcript: ENST00000543122
  gene symbol: SPATA32
  hgvsc: ENST00000543122.1:c.184C>T
  hgvsp: ENSP00000442724.1:p.Leu62Phe
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000331532
  ensembl transcript: ENST00000331780
  gene symbol: SPATA32
  hgvsc: ENST00000331780.4:c.247C>T
  hgvsp: ENSP00000331532.4:p.Leu83Phe
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588504
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588504.1:n.68+7932G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000591263
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000591263.1:n.163+717G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000590100
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000590100.1:n.68+7932G>A
  variant of: http://identifiers.org/hgnc/44359
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13285
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5281
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2756
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12835
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24085
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu83Phe
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ

17-43333309-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43333309
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 43333309
    reference: chr 17
allele count: 1
allele frequency: 8.279105194310599e-6
allele num: 120786
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000591263
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000591263.1:n.163+724G>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000442724
  ensembl transcript: ENST00000543122
  gene symbol: SPATA32
  hgvsc: ENST00000543122.1:c.177C>A
  hgvsp: ENST00000543122.1:c.177C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000331532
  ensembl transcript: ENST00000331780
  gene symbol: SPATA32
  hgvsc: ENST00000331780.4:c.240C>A
  hgvsp: ENST00000331780.4:c.240C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000585346
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000585346.1:n.134+724G>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467901
  ensembl transcript: ENST00000588866
  gene symbol: SPATA32
  hgvsc: ENST00000588866.1:c.*147C>A
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467344
  ensembl transcript: ENST00000586359
  gene symbol: SPATA32
  hgvsc: ENST00000586359.1:c.*758C>A
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000590100
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000590100.1:n.68+7939G>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588698
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588698.1:n.123+724G>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588504
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588504.1:n.68+7939G>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588160
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588160.1:n.195+724G>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000592422
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000592422.1:n.230+724G>T
  variant of: http://identifiers.org/hgnc/44359
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5281
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24073
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13231
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12834
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2756
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala80Ala
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Other
reference allele: G
site quality: MQ
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

17-43333310-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43333310
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 43333310
    reference: chr 17
allele count: 3
allele frequency: 2.484389751064147e-5
allele num: 120754
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588698
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588698.1:n.123+725G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000442724
  ensembl transcript: ENST00000543122
  gene symbol: SPATA32
  hgvsc: ENST00000543122.1:c.176C>T
  hgvsp: ENSP00000442724.1:p.Ala59Val
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467344
  ensembl transcript: ENST00000586359
  gene symbol: SPATA32
  hgvsc: ENST00000586359.1:c.*757C>T
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000590100
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000590100.1:n.68+7940G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000331532
  ensembl transcript: ENST00000331780
  gene symbol: SPATA32
  hgvsc: ENST00000331780.4:c.239C>T
  hgvsp: ENSP00000331532.4:p.Ala80Val
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588160
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588160.1:n.195+725G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467901
  ensembl transcript: ENST00000588866
  gene symbol: SPATA32
  hgvsc: ENST00000588866.1:c.*146C>T
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000585346
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000585346.1:n.134+725G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000592422
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000592422.1:n.230+725G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588504
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588504.1:n.68+7940G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000591263
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000591263.1:n.163+725G>A
  variant of: http://identifiers.org/hgnc/44359
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24072
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5280
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2756
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13205
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12830
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala80Val
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

17-43333310-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43333310
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 43333310
    reference: chr 17
allele count: 1
allele frequency: 8.281299170213822e-6
allele num: 120754
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000590100
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000590100.1:n.68+7940G>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588160
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588160.1:n.195+725G>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000331532
  ensembl transcript: ENST00000331780
  gene symbol: SPATA32
  hgvsc: ENST00000331780.4:c.239C>A
  hgvsp: ENSP00000331532.4:p.Ala80Asp
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000585346
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000585346.1:n.134+725G>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000592422
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000592422.1:n.230+725G>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467901
  ensembl transcript: ENST00000588866
  gene symbol: SPATA32
  hgvsc: ENST00000588866.1:c.*146C>A
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000442724
  ensembl transcript: ENST00000543122
  gene symbol: SPATA32
  hgvsc: ENST00000543122.1:c.176C>A
  hgvsp: ENSP00000442724.1:p.Ala59Asp
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588698
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588698.1:n.123+725G>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467344
  ensembl transcript: ENST00000586359
  gene symbol: SPATA32
  hgvsc: ENST00000586359.1:c.*757C>A
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588504
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588504.1:n.68+7940G>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000591263
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000591263.1:n.163+725G>T
  variant of: http://identifiers.org/hgnc/44359
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5280
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13205
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2756
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24072
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12830
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ala80Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP

17-43333311-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43333311
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 43333311
    reference: chr 17
allele count: 1
allele frequency: 8.282122210995345e-6
allele num: 120742
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467901
  ensembl transcript: ENST00000588866
  gene symbol: SPATA32
  hgvsc: ENST00000588866.1:c.*145G>C
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000591263
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000591263.1:n.163+726C>G
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588504
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588504.1:n.68+7941C>G
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000442724
  ensembl transcript: ENST00000543122
  gene symbol: SPATA32
  hgvsc: ENST00000543122.1:c.175G>C
  hgvsp: ENSP00000442724.1:p.Ala59Pro
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588698
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588698.1:n.123+726C>G
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000592422
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000592422.1:n.230+726C>G
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000331532
  ensembl transcript: ENST00000331780
  gene symbol: SPATA32
  hgvsc: ENST00000331780.4:c.238G>C
  hgvsp: ENSP00000331532.4:p.Ala80Pro
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000585346
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000585346.1:n.134+726C>G
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588160
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588160.1:n.195+726C>G
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467344
  ensembl transcript: ENST00000586359
  gene symbol: SPATA32
  hgvsc: ENST00000586359.1:c.*756G>C
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000590100
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000590100.1:n.68+7941C>G
  variant of: http://identifiers.org/hgnc/44359
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24075
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2757
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12831
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5279
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13206
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala80Pro
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD

17-43333313-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43333313
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 43333313
    reference: chr 17
allele count: 1
allele frequency: 8.282533792737874e-6
allele num: 120736
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000590100
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000590100.1:n.68+7943G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588504
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588504.1:n.68+7943G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467901
  ensembl transcript: ENST00000588866
  gene symbol: SPATA32
  hgvsc: ENST00000588866.1:c.*143C>T
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588698
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588698.1:n.123+728G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000331532
  ensembl transcript: ENST00000331780
  gene symbol: SPATA32
  hgvsc: ENST00000331780.4:c.236C>T
  hgvsp: ENSP00000331532.4:p.Pro79Leu
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000442724
  ensembl transcript: ENST00000543122
  gene symbol: SPATA32
  hgvsc: ENST00000543122.1:c.173C>T
  hgvsp: ENSP00000442724.1:p.Pro58Leu
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000585346
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000585346.1:n.134+728G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588160
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588160.1:n.195+728G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000591263
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000591263.1:n.163+728G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467344
  ensembl transcript: ENST00000586359
  gene symbol: SPATA32
  hgvsc: ENST00000586359.1:c.*754C>T
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000592422
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000592422.1:n.230+728G>A
  variant of: http://identifiers.org/hgnc/44359
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2755
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24076
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12831
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5278
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13209
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro79Leu
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: G
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum

17-43333314-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43333314
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 43333314
    reference: chr 17
allele count: 1
allele frequency: 8.282808203293245e-6
allele num: 120732
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000590100
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000590100.1:n.68+7944G>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588160
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588160.1:n.195+729G>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000585346
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000585346.1:n.134+729G>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000591263
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000591263.1:n.163+729G>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000442724
  ensembl transcript: ENST00000543122
  gene symbol: SPATA32
  hgvsc: ENST00000543122.1:c.172C>A
  hgvsp: ENSP00000442724.1:p.Pro58Thr
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000331532
  ensembl transcript: ENST00000331780
  gene symbol: SPATA32
  hgvsc: ENST00000331780.4:c.235C>A
  hgvsp: ENSP00000331532.4:p.Pro79Thr
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588698
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588698.1:n.123+729G>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467344
  ensembl transcript: ENST00000586359
  gene symbol: SPATA32
  hgvsc: ENST00000586359.1:c.*753C>A
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588504
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588504.1:n.68+7944G>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000592422
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000592422.1:n.230+729G>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467901
  ensembl transcript: ENST00000588866
  gene symbol: SPATA32
  hgvsc: ENST00000588866.1:c.*142C>A
  variant of: http://identifiers.org/hgnc/26349
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12834
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24072
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13208
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2757
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5277
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro79Thr
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum

17-43333317-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43333317
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 43333317
    reference: chr 17
allele count: 220
allele frequency: 1.822549913014663e-3
allele num: 120710
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467344
  ensembl transcript: ENST00000586359
  gene symbol: SPATA32
  hgvsc: ENST00000586359.1:c.*750T>C
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588504
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588504.1:n.68+7947A>G
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000442724
  ensembl transcript: ENST00000543122
  gene symbol: SPATA32
  hgvsc: ENST00000543122.1:c.169T>C
  hgvsp: ENSP00000442724.1:p.Tyr57His
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000331532
  ensembl transcript: ENST00000331780
  gene symbol: SPATA32
  hgvsc: ENST00000331780.4:c.232T>C
  hgvsp: ENSP00000331532.4:p.Tyr78His
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000591263
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000591263.1:n.163+732A>G
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000590100
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000590100.1:n.68+7947A>G
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467901
  ensembl transcript: ENST00000588866
  gene symbol: SPATA32
  hgvsc: ENST00000588866.1:c.*139T>C
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000592422
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000592422.1:n.230+732A>G
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588160
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588160.1:n.195+732A>G
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000585346
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000585346.1:n.134+732A>G
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588698
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588698.1:n.123+732A>G
  variant of: http://identifiers.org/hgnc/44359
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24018
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 4.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 12799
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 5.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 13154
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 2749
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5259
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.75e1
  variant carriers: 78
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 5.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 16
genotype quality: GenotypeQuality
hgvs: p.Tyr78His
num of homozygotes: 1
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

17-43333318-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43333318
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 43333318
    reference: chr 17
allele count: 2
allele frequency: 1.657247974014352e-5
allele num: 120682
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588504
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588504.1:n.68+7948T>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588698
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588698.1:n.123+733T>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467901
  ensembl transcript: ENST00000588866
  gene symbol: SPATA32
  hgvsc: ENST00000588866.1:c.*138A>T
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000442724
  ensembl transcript: ENST00000543122
  gene symbol: SPATA32
  hgvsc: ENST00000543122.1:c.168A>T
  hgvsp: ENST00000543122.1:c.168A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588160
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588160.1:n.195+733T>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000592422
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000592422.1:n.230+733T>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000591263
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000591263.1:n.163+733T>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000331532
  ensembl transcript: ENST00000331780
  gene symbol: SPATA32
  hgvsc: ENST00000331780.4:c.231A>T
  hgvsp: ENST00000331780.4:c.231A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467344
  ensembl transcript: ENST00000586359
  gene symbol: SPATA32
  hgvsc: ENST00000586359.1:c.*749A>T
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000585346
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000585346.1:n.134+733T>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000590100
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000590100.1:n.68+7948T>A
  variant of: http://identifiers.org/hgnc/44359
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24098
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12845
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13166
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2765
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5280
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu77Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: Other
reference allele: T
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD

17-43333319-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43333319
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 43333319
    reference: chr 17
allele count: 17
allele frequency: 1.408660777912199e-4
allele num: 120682
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467901
  ensembl transcript: ENST00000588866
  gene symbol: SPATA32
  hgvsc: ENST00000588866.1:c.*137T>C
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000442724
  ensembl transcript: ENST00000543122
  gene symbol: SPATA32
  hgvsc: ENST00000543122.1:c.167T>C
  hgvsp: ENSP00000442724.1:p.Leu56Pro
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000592422
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000592422.1:n.230+734A>G
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000331532
  ensembl transcript: ENST00000331780
  gene symbol: SPATA32
  hgvsc: ENST00000331780.4:c.230T>C
  hgvsp: ENSP00000331532.4:p.Leu77Pro
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588698
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588698.1:n.123+734A>G
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467344
  ensembl transcript: ENST00000586359
  gene symbol: SPATA32
  hgvsc: ENST00000586359.1:c.*748T>C
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000585346
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000585346.1:n.134+734A>G
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588504
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588504.1:n.68+7949A>G
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000590100
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000590100.1:n.68+7949A>G
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588160
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588160.1:n.195+734A>G
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000591263
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000591263.1:n.163+734A>G
  variant of: http://identifiers.org/hgnc/44359
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2763
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12844
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13161
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5278
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24097
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu77Pro
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: European (Finnish)
population: East Asian
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: BaseQRankSum

17-43333323-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43333323
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 43333323
    reference: chr 17
allele count: 2
allele frequency: 1.658209796703479e-5
allele num: 120612
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467901
  ensembl transcript: ENST00000588866
  gene symbol: SPATA32
  hgvsc: ENST00000588866.1:c.*133G>C
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000442724
  ensembl transcript: ENST00000543122
  gene symbol: SPATA32
  hgvsc: ENST00000543122.1:c.163G>C
  hgvsp: ENSP00000442724.1:p.Glu55Gln
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467344
  ensembl transcript: ENST00000586359
  gene symbol: SPATA32
  hgvsc: ENST00000586359.1:c.*744G>C
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000592422
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000592422.1:n.230+738C>G
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588698
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588698.1:n.123+738C>G
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000590100
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000590100.1:n.68+7953C>G
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588160
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588160.1:n.195+738C>G
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000591263
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000591263.1:n.163+738C>G
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000331532
  ensembl transcript: ENST00000331780
  gene symbol: SPATA32
  hgvsc: ENST00000331780.4:c.226G>C
  hgvsp: ENSP00000331532.4:p.Glu76Gln
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000585346
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000585346.1:n.134+738C>G
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588504
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588504.1:n.68+7953C>G
  variant of: http://identifiers.org/hgnc/44359
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2762
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13126
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12855
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5280
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24089
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu76Gln
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

17-43333323-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43333323
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 43333323
    reference: chr 17
allele count: 1
allele frequency: 8.291048983517394e-6
allele num: 120612
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000591263
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000591263.1:n.163+738C>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000592422
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000592422.1:n.230+738C>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000590100
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000590100.1:n.68+7953C>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588160
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588160.1:n.195+738C>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588698
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588698.1:n.123+738C>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000442724
  ensembl transcript: ENST00000543122
  gene symbol: SPATA32
  hgvsc: ENST00000543122.1:c.163G>A
  hgvsp: ENSP00000442724.1:p.Glu55Lys
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588504
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588504.1:n.68+7953C>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000331532
  ensembl transcript: ENST00000331780
  gene symbol: SPATA32
  hgvsc: ENST00000331780.4:c.226G>A
  hgvsp: ENSP00000331532.4:p.Glu76Lys
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467901
  ensembl transcript: ENST00000588866
  gene symbol: SPATA32
  hgvsc: ENST00000588866.1:c.*133G>A
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000585346
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000585346.1:n.134+738C>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467344
  ensembl transcript: ENST00000586359
  gene symbol: SPATA32
  hgvsc: ENST00000586359.1:c.*744G>A
  variant of: http://identifiers.org/hgnc/26349
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2762
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13126
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5280
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24089
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12855
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu76Lys
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff

17-43333328-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43333328
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 43333328
    reference: chr 17
allele count: 1
allele frequency: 8.296276631047985e-6
allele num: 120536
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588160
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588160.1:n.195+743T>G
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000585346
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000585346.1:n.134+743T>G
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000331532
  ensembl transcript: ENST00000331780
  gene symbol: SPATA32
  hgvsc: ENST00000331780.4:c.221A>C
  hgvsp: ENSP00000331532.4:p.Glu74Ala
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000592422
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000592422.1:n.230+743T>G
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000442724
  ensembl transcript: ENST00000543122
  gene symbol: SPATA32
  hgvsc: ENST00000543122.1:c.158A>C
  hgvsp: ENSP00000442724.1:p.Glu53Ala
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000590100
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000590100.1:n.68+7958T>G
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467344
  ensembl transcript: ENST00000586359
  gene symbol: SPATA32
  hgvsc: ENST00000586359.1:c.*739A>C
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467901
  ensembl transcript: ENST00000588866
  gene symbol: SPATA32
  hgvsc: ENST00000588866.1:c.*128A>C
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000591263
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000591263.1:n.163+743T>G
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588504
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588504.1:n.68+7958T>G
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588698
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588698.1:n.123+743T>G
  variant of: http://identifiers.org/hgnc/44359
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5275
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2760
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24070
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12852
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13078
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu74Ala
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ

http://identifiers.org/exac.variant/17-43333331-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43333331
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 43333331
    reference: chr 17
allele count: 1
allele frequency: 8.301924386072691e-6
allele num: 120454
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467344
  ensembl transcript: ENST00000586359
  gene symbol: SPATA32
  hgvsc: ENST00000586359.1:c.*736T>G
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000585346
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000585346.1:n.134+746A>C
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588160
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588160.1:n.195+746A>C
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000590100
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000590100.1:n.68+7961A>C
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588698
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588698.1:n.123+746A>C
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000331532
  ensembl transcript: ENST00000331780
  gene symbol: SPATA32
  hgvsc: ENST00000331780.4:c.218T>G
  hgvsp: ENSP00000331532.4:p.Leu73Arg
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000591263
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000591263.1:n.163+746A>C
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588504
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588504.1:n.68+7961A>C
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467901
  ensembl transcript: ENST00000588866
  gene symbol: SPATA32
  hgvsc: ENST00000588866.1:c.*125T>G
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000442724
  ensembl transcript: ENST00000543122
  gene symbol: SPATA32
  hgvsc: ENST00000543122.1:c.155T>G
  hgvsp: ENSP00000442724.1:p.Leu52Arg
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000592422
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000592422.1:n.230+746A>C
  variant of: http://identifiers.org/hgnc/44359
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24046
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5269
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2758
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13045
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12829
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu73Arg
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

http://identifiers.org/exac.variant/17-43333338-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43333338
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 43333338
    reference: chr 17
allele count: 1
allele frequency: 8.311446524153063e-6
allele num: 120316
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588698
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588698.1:n.123+753C>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000331532
  ensembl transcript: ENST00000331780
  gene symbol: SPATA32
  hgvsc: ENST00000331780.4:c.211G>T
  hgvsp: ENSP00000331532.4:p.Ala71Ser
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467901
  ensembl transcript: ENST00000588866
  gene symbol: SPATA32
  hgvsc: ENST00000588866.1:c.*118G>T
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467344
  ensembl transcript: ENST00000586359
  gene symbol: SPATA32
  hgvsc: ENST00000586359.1:c.*729G>T
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000591263
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000591263.1:n.163+753C>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000442724
  ensembl transcript: ENST00000543122
  gene symbol: SPATA32
  hgvsc: ENST00000543122.1:c.148G>T
  hgvsp: ENSP00000442724.1:p.Ala50Ser
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588504
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588504.1:n.68+7968C>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588160
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588160.1:n.195+753C>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000590100
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000590100.1:n.68+7968C>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000592422
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000592422.1:n.230+753C>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000585346
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000585346.1:n.134+753C>A
  variant of: http://identifiers.org/hgnc/44359
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23954
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12794
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5261
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2757
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13002
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala71Ser
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff

17-43333339-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43333339
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 43333339
    reference: chr 17
allele count: 2
allele frequency: 1.662869780667476e-5
allele num: 120274
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588160
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588160.1:n.195+754C>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000585346
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000585346.1:n.134+754C>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467344
  ensembl transcript: ENST00000586359
  gene symbol: SPATA32
  hgvsc: ENST00000586359.1:c.*728G>A
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000331532
  ensembl transcript: ENST00000331780
  gene symbol: SPATA32
  hgvsc: ENST00000331780.4:c.210G>A
  hgvsp: ENST00000331780.4:c.210G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588698
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588698.1:n.123+754C>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000592422
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000592422.1:n.230+754C>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000442724
  ensembl transcript: ENST00000543122
  gene symbol: SPATA32
  hgvsc: ENST00000543122.1:c.147G>A
  hgvsp: ENST00000543122.1:c.147G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000591263
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000591263.1:n.163+754C>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000590100
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000590100.1:n.68+7969C>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467901
  ensembl transcript: ENST00000588866
  gene symbol: SPATA32
  hgvsc: ENST00000588866.1:c.*117G>A
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588504
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588504.1:n.68+7969C>T
  variant of: http://identifiers.org/hgnc/44359
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12984
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5254
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12762
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2757
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23933
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro70Pro
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ

17-43333340-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43333340
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 43333340
    reference: chr 17
allele count: 1
allele frequency: 8.315178526882972e-6
allele num: 120262
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588698
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588698.1:n.123+755G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000590100
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000590100.1:n.68+7970G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000442724
  ensembl transcript: ENST00000543122
  gene symbol: SPATA32
  hgvsc: ENST00000543122.1:c.146C>T
  hgvsp: ENSP00000442724.1:p.Pro49Leu
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588504
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588504.1:n.68+7970G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467344
  ensembl transcript: ENST00000586359
  gene symbol: SPATA32
  hgvsc: ENST00000586359.1:c.*727C>T
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000592422
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000592422.1:n.230+755G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000585346
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000585346.1:n.134+755G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000591263
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000591263.1:n.163+755G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588160
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588160.1:n.195+755G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000331532
  ensembl transcript: ENST00000331780
  gene symbol: SPATA32
  hgvsc: ENST00000331780.4:c.209C>T
  hgvsp: ENSP00000331532.4:p.Pro70Leu
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467901
  ensembl transcript: ENST00000588866
  gene symbol: SPATA32
  hgvsc: ENST00000588866.1:c.*116C>T
  variant of: http://identifiers.org/hgnc/26349
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2755
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12986
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12758
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5256
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23934
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro70Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: FS
site quality: ReadPosRankSum

17-43333341-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43333341
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 43333341
    reference: chr 17
allele count: 2
allele frequency: 1.665251203143994e-5
allele num: 120102
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588160
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588160.1:n.195+756G>C
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000590100
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000590100.1:n.68+7971G>C
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000331532
  ensembl transcript: ENST00000331780
  gene symbol: SPATA32
  hgvsc: ENST00000331780.4:c.208C>G
  hgvsp: ENSP00000331532.4:p.Pro70Ala
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588698
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588698.1:n.123+756G>C
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588504
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588504.1:n.68+7971G>C
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467901
  ensembl transcript: ENST00000588866
  gene symbol: SPATA32
  hgvsc: ENST00000588866.1:c.*115C>G
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000442724
  ensembl transcript: ENST00000543122
  gene symbol: SPATA32
  hgvsc: ENST00000543122.1:c.145C>G
  hgvsp: ENSP00000442724.1:p.Pro49Ala
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467344
  ensembl transcript: ENST00000586359
  gene symbol: SPATA32
  hgvsc: ENST00000586359.1:c.*726C>G
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000585346
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000585346.1:n.134+756G>C
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000592422
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000592422.1:n.230+756G>C
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000591263
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000591263.1:n.163+756G>C
  variant of: http://identifiers.org/hgnc/44359
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12933
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1190
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12682
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5239
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2752
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23889
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro70Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

17-43333350-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43333350
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 43333350
    reference: chr 17
allele count: 6
allele frequency: 5.018904540435641e-5
allele num: 119548
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588504
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588504.1:n.68+7980C>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000590100
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000590100.1:n.68+7980C>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467901
  ensembl transcript: ENST00000588866
  gene symbol: SPATA32
  hgvsc: ENST00000588866.1:c.*106G>A
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467344
  ensembl transcript: ENST00000586359
  gene symbol: SPATA32
  hgvsc: ENST00000586359.1:c.*717G>A
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588698
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588698.1:n.123+765C>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000585346
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000585346.1:n.134+765C>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588160
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588160.1:n.195+765C>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000442724
  ensembl transcript: ENST00000543122
  gene symbol: SPATA32
  hgvsc: ENST00000543122.1:c.136G>A
  hgvsp: ENSP00000442724.1:p.Gly46Arg
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000591263
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000591263.1:n.163+765C>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000592422
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000592422.1:n.230+765C>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000331532
  ensembl transcript: ENST00000331780
  gene symbol: SPATA32
  hgvsc: ENST00000331780.4:c.199G>A
  hgvsp: ENSP00000331532.4:p.Gly67Arg
  variant of: http://identifiers.org/hgnc/26349
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12479
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12867
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1183
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23612
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5164
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2739
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly67Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: African
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS

17-43333351-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43333351
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 43333351
    reference: chr 17
allele count: 215
allele frequency: 1.800489063075738e-3
allele num: 119412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000442724
  ensembl transcript: ENST00000543122
  gene symbol: SPATA32
  hgvsc: ENST00000543122.1:c.135C>T
  hgvsp: ENST00000543122.1:c.135C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467901
  ensembl transcript: ENST00000588866
  gene symbol: SPATA32
  hgvsc: ENST00000588866.1:c.*105C>T
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000585346
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000585346.1:n.134+766G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000331532
  ensembl transcript: ENST00000331780
  gene symbol: SPATA32
  hgvsc: ENST00000331780.4:c.198C>T
  hgvsp: ENST00000331780.4:c.198C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467344
  ensembl transcript: ENST00000586359
  gene symbol: SPATA32
  hgvsc: ENST00000586359.1:c.*716C>T
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000592422
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000592422.1:n.230+766G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588160
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588160.1:n.195+766G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000591263
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000591263.1:n.163+766G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588698
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588698.1:n.123+766G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588504
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588504.1:n.68+7981G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000590100
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000590100.1:n.68+7981G>A
  variant of: http://identifiers.org/hgnc/44359
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 23551
  bin: 2.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 5.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 12807
  bin: 2.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 12418
  bin: 3.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 5153
  bin: 3.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 2747
  bin: 4.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 4.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
hgvs: p.Ile66Ile
num of homozygotes: 4
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQ
site quality: VQSLOD

17-43333353-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43333353
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 43333353
    reference: chr 17
allele count: 1
allele frequency: 8.397292712829384e-6
allele num: 119086
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000591263
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000591263.1:n.163+768T>C
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588160
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588160.1:n.195+768T>C
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000590100
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000590100.1:n.68+7983T>C
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588698
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588698.1:n.123+768T>C
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588504
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588504.1:n.68+7983T>C
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000585346
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000585346.1:n.134+768T>C
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467901
  ensembl transcript: ENST00000588866
  gene symbol: SPATA32
  hgvsc: ENST00000588866.1:c.*103A>G
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000592422
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000592422.1:n.230+768T>C
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000331532
  ensembl transcript: ENST00000331780
  gene symbol: SPATA32
  hgvsc: ENST00000331780.4:c.196A>G
  hgvsp: ENSP00000331532.4:p.Ile66Val
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000442724
  ensembl transcript: ENST00000543122
  gene symbol: SPATA32
  hgvsc: ENST00000543122.1:c.133A>G
  hgvsp: ENSP00000442724.1:p.Ile45Val
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467344
  ensembl transcript: ENST00000586359
  gene symbol: SPATA32
  hgvsc: ENST00000586359.1:c.*714A>G
  variant of: http://identifiers.org/hgnc/26349
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5130
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12358
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12759
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2726
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23428
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1184
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile66Val
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

17-43333354-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43333354
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 43333354
    reference: chr 17
allele count: 3
allele frequency: 2.519145505844418e-5
allele num: 119088
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000591263
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000591263.1:n.163+769C>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467901
  ensembl transcript: ENST00000588866
  gene symbol: SPATA32
  hgvsc: ENST00000588866.1:c.*102G>A
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588698
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588698.1:n.123+769C>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000442724
  ensembl transcript: ENST00000543122
  gene symbol: SPATA32
  hgvsc: ENST00000543122.1:c.132G>A
  hgvsp: ENST00000543122.1:c.132G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588160
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588160.1:n.195+769C>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000585346
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000585346.1:n.134+769C>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467344
  ensembl transcript: ENST00000586359
  gene symbol: SPATA32
  hgvsc: ENST00000586359.1:c.*713G>A
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000331532
  ensembl transcript: ENST00000331780
  gene symbol: SPATA32
  hgvsc: ENST00000331780.4:c.195G>A
  hgvsp: ENST00000331780.4:c.195G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588504
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588504.1:n.68+7984C>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000590100
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000590100.1:n.68+7984C>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000592422
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000592422.1:n.230+769C>T
  variant of: http://identifiers.org/hgnc/44359
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 987
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12348
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5123
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1183
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23434
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12760
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2728
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Glu65Glu
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum

17-43333360-T-TTCTGGG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43333360
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 43333366
    reference: chr 17
allele count: 4
allele frequency: 3.393454027181567e-5
allele num: 117874
alternate allele: TTCTGGG
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000442724
  ensembl transcript: ENST00000543122
  gene symbol: SPATA32
  hgvsc: ENST00000543122.1:c.120_125dupCCCAGA
  hgvsp: ENSP00000442724.1:p.Asp40_Pro41dup
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000592422
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000592422.1:n.230+796_230+801dupTGGGTC
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467901
  ensembl transcript: ENST00000588866
  gene symbol: SPATA32
  hgvsc: ENST00000588866.1:c.*90_*95dupCCCAGA
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588698
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588698.1:n.123+796_123+801dupTGGGTC
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588160
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588160.1:n.195+796_195+801dupTGGGTC
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000331532
  ensembl transcript: ENST00000331780
  gene symbol: SPATA32
  hgvsc: ENST00000331780.4:c.183_188dupCCCAGA
  hgvsp: ENSP00000331532.4:p.Asp61_Pro62dup
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000590100
  gene symbol: MAP3K14-AS1
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000591263
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000591263.1:n.163+796_163+801dupTGGGTC
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467344
  ensembl transcript: ENST00000586359
  gene symbol: SPATA32
  hgvsc: ENST00000586359.1:c.*701_*706dupCCCAGA
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588504
  gene symbol: MAP3K14-AS1
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000585346
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000585346.1:n.134+796_134+801dupTGGGTC
  variant of: http://identifiers.org/hgnc/44359
canonical: true
consequence: inframe insertion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1681
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12511
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1497
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11912
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5088
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22666
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1178
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2717
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8447
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Asp61_Pro62dup
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
reference allele: T
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD

17-43333360-TTCTGGG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43333360
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 43333354
    reference: chr 17
allele count: 1
allele frequency: 8.483635067953916e-6
allele num: 117874
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000590100
  gene symbol: MAP3K14-AS1
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588698
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588698.1:n.123+796_123+801delTGGGTC
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000442724
  ensembl transcript: ENST00000543122
  gene symbol: SPATA32
  hgvsc: ENST00000543122.1:c.120_125delCCCAGA
  hgvsp: ENSP00000442724.1:p.Asp40_Pro41del
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000331532
  ensembl transcript: ENST00000331780
  gene symbol: SPATA32
  hgvsc: ENST00000331780.4:c.183_188delCCCAGA
  hgvsp: ENSP00000331532.4:p.Asp61_Pro62del
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000592422
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000592422.1:n.230+796_230+801delTGGGTC
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467344
  ensembl transcript: ENST00000586359
  gene symbol: SPATA32
  hgvsc: ENST00000586359.1:c.*701_*706delCCCAGA
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467901
  ensembl transcript: ENST00000588866
  gene symbol: SPATA32
  hgvsc: ENST00000588866.1:c.*90_*95delCCCAGA
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588160
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588160.1:n.195+796_195+801delTGGGTC
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000585346
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000585346.1:n.134+796_134+801delTGGGTC
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000591263
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000591263.1:n.163+796_163+801delTGGGTC
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588504
  gene symbol: MAP3K14-AS1
  variant of: http://identifiers.org/hgnc/44359
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5088
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1681
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12511
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2717
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1178
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1497
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22666
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11912
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asp61_Pro62del
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
reference allele: TTCTGGG
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ClippingRankSum

17-43333360-TTCTGGGTCTGGG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43333360
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 43333348
    reference: chr 17
allele count: 1
allele frequency: 8.483635067953916e-6
allele num: 117874
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000591263
  gene symbol: MAP3K14-AS1
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000585346
  gene symbol: MAP3K14-AS1
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000331532
  ensembl transcript: ENST00000331780
  gene symbol: SPATA32
  hgvsp: ENSP00000331532.4:p.Asp59_Pro62del
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000442724
  ensembl transcript: ENST00000543122
  gene symbol: SPATA32
  hgvsp: ENSP00000442724.1:p.Asp38_Pro41del
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467901
  ensembl transcript: ENST00000588866
  gene symbol: SPATA32
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588504
  gene symbol: MAP3K14-AS1
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467344
  ensembl transcript: ENST00000586359
  gene symbol: SPATA32
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000592422
  gene symbol: MAP3K14-AS1
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000590100
  gene symbol: MAP3K14-AS1
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588160
  gene symbol: MAP3K14-AS1
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588698
  gene symbol: MAP3K14-AS1
  variant of: http://identifiers.org/hgnc/44359
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11912
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22666
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1178
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1497
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1681
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12511
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2717
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5088
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3350
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Asp59_Pro62del
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: TTCTGGGTCTGGG
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

17-43333364-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43333364
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 43333364
    reference: chr 17
allele count: 1
allele frequency: 9.101665604805679e-6
allele num: 109870
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000585346
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000585346.1:n.134+779G>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467344
  ensembl transcript: ENST00000586359
  gene symbol: SPATA32
  hgvsc: ENST00000586359.1:c.*703C>A
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588698
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588698.1:n.123+779G>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000590100
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000590100.1:n.68+7994G>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000331532
  ensembl transcript: ENST00000331780
  gene symbol: SPATA32
  hgvsc: ENST00000331780.4:c.185C>A
  hgvsp: ENSP00000331532.4:p.Pro62Gln
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000591263
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000591263.1:n.163+779G>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467901
  ensembl transcript: ENST00000588866
  gene symbol: SPATA32
  hgvsc: ENST00000588866.1:c.*92C>A
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000442724
  ensembl transcript: ENST00000543122
  gene symbol: SPATA32
  hgvsc: ENST00000543122.1:c.122C>A
  hgvsp: ENSP00000442724.1:p.Pro41Gln
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588504
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588504.1:n.68+7994G>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588160
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588160.1:n.195+779G>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000592422
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000592422.1:n.230+779G>T
  variant of: http://identifiers.org/hgnc/44359
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2800
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5410
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5076
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1658
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10212
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11169
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22545
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro62Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ

17-43333368-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43333368
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 43333368
    reference: chr 17
allele count: 1
allele frequency: 9.09454690967296e-6
allele num: 109956
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467901
  ensembl transcript: ENST00000588866
  gene symbol: SPATA32
  hgvsc: ENST00000588866.1:c.*88G>A
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588160
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588160.1:n.195+783C>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000331532
  ensembl transcript: ENST00000331780
  gene symbol: SPATA32
  hgvsc: ENST00000331780.4:c.181G>A
  hgvsp: ENSP00000331532.4:p.Asp61Asn
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000591263
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000591263.1:n.163+783C>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467344
  ensembl transcript: ENST00000586359
  gene symbol: SPATA32
  hgvsc: ENST00000586359.1:c.*699G>A
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000590100
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000590100.1:n.68+7998C>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588698
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588698.1:n.123+783C>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000585346
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000585346.1:n.134+783C>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000442724
  ensembl transcript: ENST00000543122
  gene symbol: SPATA32
  hgvsc: ENST00000543122.1:c.118G>A
  hgvsp: ENSP00000442724.1:p.Asp40Asn
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000592422
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000592422.1:n.230+783C>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588504
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588504.1:n.68+7998C>T
  variant of: http://identifiers.org/hgnc/44359
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 9613
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1615
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1830
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11913
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5428
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5134
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23963
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp61Asn
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD

17-43333381-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43333381
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 43333381
    reference: chr 17
allele count: 3
allele frequency: 2.842416432956871e-5
allele num: 105544
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588160
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588160.1:n.195+796T>C
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467344
  ensembl transcript: ENST00000586359
  gene symbol: SPATA32
  hgvsc: ENST00000586359.1:c.*686A>G
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000591263
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000591263.1:n.163+796T>C
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000331532
  ensembl transcript: ENST00000331780
  gene symbol: SPATA32
  hgvsc: ENST00000331780.4:c.168A>G
  hgvsp: ENST00000331780.4:c.168A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588698
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588698.1:n.123+796T>C
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588504
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588504.1:n.68+8011T>C
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467901
  ensembl transcript: ENST00000588866
  gene symbol: SPATA32
  hgvsc: ENST00000588866.1:c.*75A>G
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000585346
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000585346.1:n.134+796T>C
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000442724
  ensembl transcript: ENST00000543122
  gene symbol: SPATA32
  hgvsc: ENST00000543122.1:c.105A>G
  hgvsp: ENST00000543122.1:c.105A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000590100
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000590100.1:n.68+8011T>C
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000592422
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000592422.1:n.230+796T>C
  variant of: http://identifiers.org/hgnc/44359
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21921
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1978
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7475
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7108
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7549
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12122
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro56Pro
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP

17-43333382-G-GGGTCCA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43333382
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 43333388
    reference: chr 17
allele count: 1
allele frequency: 9.493430546062126e-6
allele num: 105336
alternate allele: GGGTCCA
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000590100
  gene symbol: MAP3K14-AS1
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000331532
  ensembl transcript: ENST00000331780
  gene symbol: SPATA32
  hgvsc: ENST00000331780.4:c.161_166dupTGGACC
  hgvsp: ENSP00000331532.4:p.Leu54_Asp55dup
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467344
  ensembl transcript: ENST00000586359
  gene symbol: SPATA32
  hgvsc: ENST00000586359.1:c.*679_*684dupTGGACC
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000592422
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000592422.1:n.230+810_230+815dupGGTCCA
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588504
  gene symbol: MAP3K14-AS1
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000585346
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000585346.1:n.134+810_134+815dupGGTCCA
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588160
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588160.1:n.195+810_195+815dupGGTCCA
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467901
  ensembl transcript: ENST00000588866
  gene symbol: SPATA32
  hgvsc: ENST00000588866.1:c.*68_*73dupTGGACC
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000591263
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000591263.1:n.163+810_163+815dupGGTCCA
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000442724
  ensembl transcript: ENST00000543122
  gene symbol: SPATA32
  hgvsc: ENST00000543122.1:c.98_103dupTGGACC
  hgvsp: ENSP00000442724.1:p.Leu33_Asp34dup
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588698
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588698.1:n.123+810_123+815dupGGTCCA
  variant of: http://identifiers.org/hgnc/44359
canonical: true
consequence: inframe insertion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12086
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7464
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1971
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7196
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21895
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7563
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Leu54_Asp55dup
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

17-43333383-G-GGTCTGT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43333383
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 43333389
    reference: chr 17
allele count: 1
allele frequency: 1.012268696602826e-5
allele num: 98788
alternate allele: GGTCTGT
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588504
  gene symbol: MAP3K14-AS1
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467344
  ensembl transcript: ENST00000586359
  gene symbol: SPATA32
  hgvsc: ENST00000586359.1:c.*683_*684insACAGAC
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000442724
  ensembl transcript: ENST00000543122
  gene symbol: SPATA32
  hgvsc: ENST00000543122.1:c.102_103insACAGAC
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467901
  ensembl transcript: ENST00000588866
  gene symbol: SPATA32
  hgvsc: ENST00000588866.1:c.*72_*73insACAGAC
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000591263
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000591263.1:n.163+801_163+802insTGTGTC
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000590100
  gene symbol: MAP3K14-AS1
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000331532
  ensembl transcript: ENST00000331780
  gene symbol: SPATA32
  hgvsc: ENST00000331780.4:c.165_166insACAGAC
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588160
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588160.1:n.195+801_195+802insTGTGTC
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000592422
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000592422.1:n.230+801_230+802insTGTGTC
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000585346
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000585346.1:n.134+801_134+802insTGTGTC
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588698
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588698.1:n.123+801_123+802insTGTGTC
  variant of: http://identifiers.org/hgnc/44359
canonical: true
consequence: inframe insertion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11473
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9944
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10391
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18415
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2524
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5528
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17816
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asp55_Pro56insThrAsp
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP

17-43333402-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43333402
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 43333402
    reference: chr 17
allele count: 2
allele frequency: 2.245777937477542e-5
allele num: 89056
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588698
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588698.1:n.123+817T>C
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000442724
  ensembl transcript: ENST00000543122
  gene symbol: SPATA32
  hgvsc: ENST00000543122.1:c.84A>G
  hgvsp: ENST00000543122.1:c.84A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467901
  ensembl transcript: ENST00000588866
  gene symbol: SPATA32
  hgvsc: ENST00000588866.1:c.*54A>G
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588504
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588504.1:n.68+8032T>C
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467344
  ensembl transcript: ENST00000586359
  gene symbol: SPATA32
  hgvsc: ENST00000586359.1:c.*665A>G
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000591263
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000591263.1:n.163+817T>C
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588160
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588160.1:n.195+817T>C
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000590100
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000590100.1:n.68+8032T>C
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000331532
  ensembl transcript: ENST00000331780
  gene symbol: SPATA32
  hgvsc: ENST00000331780.4:c.147A>G
  hgvsp: ENST00000331780.4:c.147A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000585346
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000585346.1:n.134+817T>C
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000592422
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000592422.1:n.230+817T>C
  variant of: http://identifiers.org/hgnc/44359
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1778
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13962
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14060
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13366
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2524
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3443
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10346
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln49Gln
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: Latino
population: African
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD

17-43333410-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43333410
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 43333410
    reference: chr 17
allele count: 1
allele frequency: 1.231557427522845e-5
allele num: 81198
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588160
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588160.1:n.195+825G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000590100
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000590100.1:n.68+8040G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000585346
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000585346.1:n.134+825G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000442724
  ensembl transcript: ENST00000543122
  gene symbol: SPATA32
  hgvsc: ENST00000543122.1:c.76C>T
  hgvsp: ENSP00000442724.1:p.Gln26Ter
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000592422
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000592422.1:n.230+825G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588698
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588698.1:n.123+825G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467344
  ensembl transcript: ENST00000586359
  gene symbol: SPATA32
  hgvsc: ENST00000586359.1:c.*657C>T
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000331532
  ensembl transcript: ENST00000331780
  gene symbol: SPATA32
  hgvsc: ENST00000331780.4:c.139C>T
  hgvsp: ENSP00000331532.4:p.Gln47Ter
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000591263
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000591263.1:n.163+825G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467901
  ensembl transcript: ENST00000588866
  gene symbol: SPATA32
  hgvsc: ENST00000588866.1:c.*46C>T
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588504
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588504.1:n.68+8040G>A
  variant of: http://identifiers.org/hgnc/44359
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16657
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2839
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7752
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3010
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16387
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2745
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10055
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln47Ter
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

17-43333421-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43333421
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 43333421
    reference: chr 17
allele count: 1
allele frequency: 1.439760423865469e-5
allele num: 69456
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000331532
  ensembl transcript: ENST00000331780
  gene symbol: SPATA32
  hgvsc: ENST00000331780.4:c.128A>G
  hgvsp: ENSP00000331532.4:p.Glu43Gly
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000592422
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000592422.1:n.230+836T>C
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588160
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588160.1:n.195+836T>C
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000591263
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000591263.1:n.163+836T>C
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000442724
  ensembl transcript: ENST00000543122
  gene symbol: SPATA32
  hgvsc: ENST00000543122.1:c.65A>G
  hgvsp: ENSP00000442724.1:p.Glu22Gly
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000585346
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000585346.1:n.134+836T>C
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467344
  ensembl transcript: ENST00000586359
  gene symbol: SPATA32
  hgvsc: ENST00000586359.1:c.*646A>G
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588698
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588698.1:n.123+836T>C
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588504
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588504.1:n.68+8051T>C
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000590100
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000590100.1:n.68+8051T>C
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467901
  ensembl transcript: ENST00000588866
  gene symbol: SPATA32
  hgvsc: ENST00000588866.1:c.*35A>G
  variant of: http://identifiers.org/hgnc/26349
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6613
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2448
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19761
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5167
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4864
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2473
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17966
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu43Gly
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: T
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum

17-43333426-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43333426
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 43333426
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 66890
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000591263
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000591263.1:n.163+841C>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000331532
  ensembl transcript: ENST00000331780
  gene symbol: SPATA32
  hgvsc: ENST00000331780.4:c.123G>A
  hgvsp: ENSP00000331532.4:p.Met41Ile
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588504
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588504.1:n.68+8056C>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588698
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588698.1:n.123+841C>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000585346
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000585346.1:n.134+841C>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000442724
  ensembl transcript: ENST00000543122
  gene symbol: SPATA32
  hgvsc: ENST00000543122.1:c.60G>A
  hgvsp: ENSP00000442724.1:p.Met20Ile
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588160
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588160.1:n.195+841C>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000592422
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000592422.1:n.230+841C>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000590100
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000590100.1:n.68+8056C>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467344
  ensembl transcript: ENST00000586359
  gene symbol: SPATA32
  hgvsc: ENST00000586359.1:c.*641G>A
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467901
  ensembl transcript: ENST00000588866
  gene symbol: SPATA32
  hgvsc: ENST00000588866.1:c.*30G>A
  variant of: http://identifiers.org/hgnc/26349
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20487
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5766
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4591
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2212
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2335
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6150
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17725
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met41Ile
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

17-43333428-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43333428
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 43333428
    reference: chr 17
allele count: 1
allele frequency: 1.521375323292256e-5
allele num: 65730
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000442724
  ensembl transcript: ENST00000543122
  gene symbol: SPATA32
  hgvsc: ENST00000543122.1:c.58A>G
  hgvsp: ENSP00000442724.1:p.Met20Val
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588698
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588698.1:n.123+843T>C
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000591263
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000591263.1:n.163+843T>C
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588504
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588504.1:n.68+8058T>C
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000331532
  ensembl transcript: ENST00000331780
  gene symbol: SPATA32
  hgvsc: ENST00000331780.4:c.121A>G
  hgvsp: ENSP00000331532.4:p.Met41Val
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000585346
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000585346.1:n.134+843T>C
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000592422
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000592422.1:n.230+843T>C
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588160
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588160.1:n.195+843T>C
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467344
  ensembl transcript: ENST00000586359
  gene symbol: SPATA32
  hgvsc: ENST00000586359.1:c.*639A>G
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000590100
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000590100.1:n.68+8058T>C
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467901
  ensembl transcript: ENST00000588866
  gene symbol: SPATA32
  hgvsc: ENST00000588866.1:c.*28A>G
  variant of: http://identifiers.org/hgnc/26349
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5887
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20769
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17678
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4337
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6212
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2086
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2265
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met41Val
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: Other
reference allele: T
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: DP

17-43333473-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43333473
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 43333473
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 34142
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000591263
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000591263.1:n.163+888G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000590100
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000590100.1:n.68+8103G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588160
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588160.1:n.195+888G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000585346
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000585346.1:n.134+888G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467344
  ensembl transcript: ENST00000586359
  gene symbol: SPATA32
  hgvsc: ENST00000586359.1:c.*627-33C>T
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588504
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588504.1:n.68+8103G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467901
  ensembl transcript: ENST00000588866
  gene symbol: SPATA32
  hgvsc: ENST00000588866.1:c.109-12C>T
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000331532
  ensembl transcript: ENST00000331780
  gene symbol: SPATA32
  hgvsc: ENST00000331780.4:c.109-33C>T
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000592422
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000592422.1:n.230+888G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000442724
  ensembl transcript: ENST00000543122
  gene symbol: SPATA32
  hgvsc: ENST00000543122.1:c.46-33C>T
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588698
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588698.1:n.123+888G>A
  variant of: http://identifiers.org/hgnc/44359
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2243
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1906
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23599
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10067
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1821
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17859
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 882
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

17-43333474-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43333474
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 43333474
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 34130
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000442724
  ensembl transcript: ENST00000543122
  gene symbol: SPATA32
  hgvsc: ENST00000543122.1:c.46-34C>T
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000590100
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000590100.1:n.68+8104G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467344
  ensembl transcript: ENST00000586359
  gene symbol: SPATA32
  hgvsc: ENST00000586359.1:c.*627-34C>T
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000592422
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000592422.1:n.230+889G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000331532
  ensembl transcript: ENST00000331780
  gene symbol: SPATA32
  hgvsc: ENST00000331780.4:c.109-34C>T
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000591263
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000591263.1:n.163+889G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588698
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588698.1:n.123+889G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467901
  ensembl transcript: ENST00000588866
  gene symbol: SPATA32
  hgvsc: ENST00000588866.1:c.109-13C>T
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588504
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588504.1:n.68+8104G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000585346
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000585346.1:n.134+889G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588160
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588160.1:n.195+889G>A
  variant of: http://identifiers.org/hgnc/44359
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17879
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1919
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1798
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10052
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23633
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2246
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2474
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/17-43333477-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43333477
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 43333477
    reference: chr 17
allele count: 1
allele frequency: 3.015135982632817e-5
allele num: 33166
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000585346
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000585346.1:n.134+892C>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467344
  ensembl transcript: ENST00000586359
  gene symbol: SPATA32
  hgvsc: ENST00000586359.1:c.*627-37G>T
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588504
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588504.1:n.68+8107C>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000592422
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000592422.1:n.230+892C>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000590100
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000590100.1:n.68+8107C>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000331532
  ensembl transcript: ENST00000331780
  gene symbol: SPATA32
  hgvsc: ENST00000331780.4:c.109-37G>T
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588698
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588698.1:n.123+892C>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467901
  ensembl transcript: ENST00000588866
  gene symbol: SPATA32
  hgvsc: ENST00000588866.1:c.109-16G>T
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000442724
  ensembl transcript: ENST00000543122
  gene symbol: SPATA32
  hgvsc: ENST00000543122.1:c.46-37G>T
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000591263
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000591263.1:n.163+892C>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588160
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588160.1:n.195+892C>A
  variant of: http://identifiers.org/hgnc/44359
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2040
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1858
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18102
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23798
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1859
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9996
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17859
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

17-43333477-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43333477
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 43333477
    reference: chr 17
allele count: 1
allele frequency: 3.015135982632817e-5
allele num: 33166
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588504
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588504.1:n.68+8107C>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467901
  ensembl transcript: ENST00000588866
  gene symbol: SPATA32
  hgvsc: ENST00000588866.1:c.109-16G>A
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588698
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588698.1:n.123+892C>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588160
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588160.1:n.195+892C>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000331532
  ensembl transcript: ENST00000331780
  gene symbol: SPATA32
  hgvsc: ENST00000331780.4:c.109-37G>A
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000590100
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000590100.1:n.68+8107C>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000592422
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000592422.1:n.230+892C>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467344
  ensembl transcript: ENST00000586359
  gene symbol: SPATA32
  hgvsc: ENST00000586359.1:c.*627-37G>A
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000591263
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000591263.1:n.163+892C>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000585346
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000585346.1:n.134+892C>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000442724
  ensembl transcript: ENST00000543122
  gene symbol: SPATA32
  hgvsc: ENST00000543122.1:c.46-37G>A
  variant of: http://identifiers.org/hgnc/26349
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18102
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1859
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23798
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2040
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9996
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1858
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20128
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

17-43333478-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43333478
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 43333478
    reference: chr 17
allele count: 4
allele frequency: 1.22256861666361e-4
allele num: 32718
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000442724
  ensembl transcript: ENST00000543122
  gene symbol: SPATA32
  hgvsc: ENST00000543122.1:c.46-38C>T
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000331532
  ensembl transcript: ENST00000331780
  gene symbol: SPATA32
  hgvsc: ENST00000331780.4:c.109-38C>T
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588160
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588160.1:n.195+893G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000591263
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000591263.1:n.163+893G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000590100
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000590100.1:n.68+8108G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467344
  ensembl transcript: ENST00000586359
  gene symbol: SPATA32
  hgvsc: ENST00000586359.1:c.*627-38C>T
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000585346
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000585346.1:n.134+893G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000592422
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000592422.1:n.230+893G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588698
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588698.1:n.123+893G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588504
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588504.1:n.68+8108G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467901
  ensembl transcript: ENST00000588866
  gene symbol: SPATA32
  hgvsc: ENST00000588866.1:c.109-17C>T
  variant of: http://identifiers.org/hgnc/26349
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18264
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1922
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1796
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23924
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9955
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1871
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2274
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP

17-43333482-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43333482
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 43333482
    reference: chr 17
allele count: 1
allele frequency: 3.068425897514575e-5
allele num: 32590
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588160
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588160.1:n.195+897G>C
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000591263
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000591263.1:n.163+897G>C
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000592422
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000592422.1:n.230+897G>C
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588698
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588698.1:n.123+897G>C
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000590100
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000590100.1:n.68+8112G>C
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467344
  ensembl transcript: ENST00000586359
  gene symbol: SPATA32
  hgvsc: ENST00000586359.1:c.*627-42C>G
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000585346
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000585346.1:n.134+897G>C
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000442724
  ensembl transcript: ENST00000543122
  gene symbol: SPATA32
  hgvsc: ENST00000543122.1:c.46-42C>G
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467901
  ensembl transcript: ENST00000588866
  gene symbol: SPATA32
  hgvsc: ENST00000588866.1:c.109-21C>G
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000331532
  ensembl transcript: ENST00000331780
  gene symbol: SPATA32
  hgvsc: ENST00000331780.4:c.109-42C>G
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588504
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588504.1:n.68+8112G>C
  variant of: http://identifiers.org/hgnc/44359
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24201
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9899
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1723
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1800
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1924
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18321
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD

17-43333488-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43333488
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 43333488
    reference: chr 17
allele count: 2
allele frequency: 6.400409626216078e-5
allele num: 31248
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000442724
  ensembl transcript: ENST00000543122
  gene symbol: SPATA32
  hgvsc: ENST00000543122.1:c.46-48C>T
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467901
  ensembl transcript: ENST00000588866
  gene symbol: SPATA32
  hgvsc: ENST00000588866.1:c.109-27C>T
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588504
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588504.1:n.68+8118G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000590100
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000590100.1:n.68+8118G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000592422
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000592422.1:n.230+903G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000331532
  ensembl transcript: ENST00000331780
  gene symbol: SPATA32
  hgvsc: ENST00000331780.4:c.109-48C>T
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588160
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588160.1:n.195+903G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467344
  ensembl transcript: ENST00000586359
  gene symbol: SPATA32
  hgvsc: ENST00000586359.1:c.*627-48C>T
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000591263
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000591263.1:n.163+903G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000585346
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000585346.1:n.134+903G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588698
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588698.1:n.123+903G>A
  variant of: http://identifiers.org/hgnc/44359
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10009
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24532
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2539
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18417
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1732
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

17-43333491-CCT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43333491
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 43333489
    reference: chr 17
allele count: 0
allele frequency: 0.0e0
allele num: 31328
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588504
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588504.1:n.68+8122_68+8123delCT
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588160
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588160.1:n.195+907_195+908delCT
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000585346
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000585346.1:n.134+907_134+908delCT
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000592422
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000592422.1:n.230+907_230+908delCT
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000331532
  ensembl transcript: ENST00000331780
  gene symbol: SPATA32
  hgvsc: ENST00000331780.4:c.109-53_109-52delAG
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467344
  ensembl transcript: ENST00000586359
  gene symbol: SPATA32
  hgvsc: ENST00000586359.1:c.*627-53_*627-52delAG
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588698
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588698.1:n.123+907_123+908delCT
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000591263
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000591263.1:n.163+907_163+908delCT
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000590100
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000590100.1:n.68+8122_68+8123delCT
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467901
  ensembl transcript: ENST00000588866
  gene symbol: SPATA32
  hgvsc: ENST00000588866.1:c.109-32_109-31delAG
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000442724
  ensembl transcript: ENST00000543122
  gene symbol: SPATA32
  hgvsc: ENST00000543122.1:c.46-53_46-52delAG
  variant of: http://identifiers.org/hgnc/26349
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1313
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2541
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18254
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24852
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9953
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17786
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: CCT
site quality: MQ
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

17-43333507-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43333507
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 43333507
    reference: chr 17
allele count: 7
allele frequency: 2.30596916589801e-4
allele num: 30356
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588698
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588698.1:n.123+922G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467344
  ensembl transcript: ENST00000586359
  gene symbol: SPATA32
  hgvsc: ENST00000586359.1:c.*627-67C>T
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467901
  ensembl transcript: ENST00000588866
  gene symbol: SPATA32
  hgvsc: ENST00000588866.1:c.109-46C>T
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000591263
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000591263.1:n.163+922G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000590100
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000590100.1:n.68+8137G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000585346
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000585346.1:n.134+922G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588504
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588504.1:n.68+8137G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588160
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588160.1:n.195+922G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000331532
  ensembl transcript: ENST00000331780
  gene symbol: SPATA32
  hgvsc: ENST00000331780.4:c.109-67C>T
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000592422
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000592422.1:n.230+922G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000442724
  ensembl transcript: ENST00000543122
  gene symbol: SPATA32
  hgvsc: ENST00000543122.1:c.46-67C>T
  variant of: http://identifiers.org/hgnc/26349
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16693
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2928
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9651
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 27040
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5203
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum

17-43333508-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43333508
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 43333508
    reference: chr 17
allele count: 1
allele frequency: 3.316969616558312e-5
allele num: 30148
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588160
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588160.1:n.195+923C>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588698
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588698.1:n.123+923C>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000585346
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000585346.1:n.134+923C>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000590100
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000590100.1:n.68+8138C>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000442724
  ensembl transcript: ENST00000543122
  gene symbol: SPATA32
  hgvsc: ENST00000543122.1:c.46-68G>A
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467344
  ensembl transcript: ENST00000586359
  gene symbol: SPATA32
  hgvsc: ENST00000586359.1:c.*627-68G>A
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588504
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588504.1:n.68+8138C>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000591263
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000591263.1:n.163+923C>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000592422
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000592422.1:n.230+923C>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000331532
  ensembl transcript: ENST00000331780
  gene symbol: SPATA32
  hgvsc: ENST00000331780.4:c.109-68G>A
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467901
  ensembl transcript: ENST00000588866
  gene symbol: SPATA32
  hgvsc: ENST00000588866.1:c.109-47G>A
  variant of: http://identifiers.org/hgnc/26349
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16536
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9711
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27145
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2922
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1555
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4389
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP

17-43333697-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43333697
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 43333697
    reference: chr 17
allele count: 4
allele frequency: 3.29614186594591e-5
allele num: 121354
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000590100
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000590100.1:n.68+8327G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000591263
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000591263.1:n.163+1112G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000331532
  ensembl transcript: ENST00000331780
  gene symbol: SPATA32
  hgvsc: ENST00000331780.4:c.108+46C>T
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000442724
  ensembl transcript: ENST00000543122
  gene symbol: SPATA32
  hgvsc: ENST00000543122.1:c.45+46C>T
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588504
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588504.1:n.68+8327G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000592422
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000592422.1:n.230+1112G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467344
  ensembl transcript: ENST00000586359
  gene symbol: SPATA32
  hgvsc: ENST00000586359.1:c.*626+46C>T
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588698
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588698.1:n.123+1112G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588160
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588160.1:n.195+1112G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467901
  ensembl transcript: ENST00000588866
  gene symbol: SPATA32
  hgvsc: ENST00000588866.1:c.108+46C>T
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000585346
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000585346.1:n.134+1112G>A
  variant of: http://identifiers.org/hgnc/44359
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1539
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33648
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2281
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2483
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1269
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2552
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2463
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1311
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1676
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2437
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2098
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1304
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1907
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

17-43333699-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43333699
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 43333699
    reference: chr 17
allele count: 25
allele frequency: 2.059986816084377e-4
allele num: 121360
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000442724
  ensembl transcript: ENST00000543122
  gene symbol: SPATA32
  hgvsc: ENST00000543122.1:c.45+44G>A
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000585346
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000585346.1:n.134+1114C>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000331532
  ensembl transcript: ENST00000331780
  gene symbol: SPATA32
  hgvsc: ENST00000331780.4:c.108+44G>A
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000590100
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000590100.1:n.68+8329C>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588504
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588504.1:n.68+8329C>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588160
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588160.1:n.195+1114C>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588698
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588698.1:n.123+1114C>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000591263
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000591263.1:n.163+1114C>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000592422
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000592422.1:n.230+1114C>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467901
  ensembl transcript: ENST00000588866
  gene symbol: SPATA32
  hgvsc: ENST00000588866.1:c.108+44G>A
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467344
  ensembl transcript: ENST00000586359
  gene symbol: SPATA32
  hgvsc: ENST00000586359.1:c.*626+44G>A
  variant of: http://identifiers.org/hgnc/26349
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2098
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1273
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2483
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1302
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1571
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2279
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33651
  bin: 9.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1907
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2463
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2438
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2550
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: DP

17-43333700-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43333700
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 43333700
    reference: chr 17
allele count: 6222
allele frequency: 5.126726212056294e-2
allele num: 121364
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000442724
  ensembl transcript: ENST00000543122
  gene symbol: SPATA32
  hgvsc: ENST00000543122.1:c.45+43C>T
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467344
  ensembl transcript: ENST00000586359
  gene symbol: SPATA32
  hgvsc: ENST00000586359.1:c.*626+43C>T
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000591263
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000591263.1:n.163+1115G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000331532
  ensembl transcript: ENST00000331780
  gene symbol: SPATA32
  hgvsc: ENST00000331780.4:c.108+43C>T
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588160
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588160.1:n.195+1115G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588504
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588504.1:n.68+8330G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588698
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588698.1:n.123+1115G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000592422
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000592422.1:n.230+1115G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000590100
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000590100.1:n.68+8330G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000585346
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000585346.1:n.134+1115G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467901
  ensembl transcript: ENST00000588866
  gene symbol: SPATA32
  hgvsc: ENST00000588866.1:c.108+43C>T
  variant of: http://identifiers.org/hgnc/26349
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 5.25e1
  variant carriers: 66
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 5.75e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2388
  bin: 9.25e1
  variant carriers: 120
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 2.75e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1314
  bin: 4.75e1
  variant carriers: 81
genotype depth: GenotypeDepth
  all individuals: 1224
  bin: 3.75e1
  variant carriers: 66
genotype depth: GenotypeDepth
  all individuals: 2204
  bin: 7.25e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 2045
  bin: 6.75e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 2.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 2282
  bin: 7.75e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1312
  bin: 4.25e1
  variant carriers: 79
genotype depth: GenotypeDepth
  all individuals: 1906
  bin: 6.25e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2331
  bin: 8.75e1
  variant carriers: 103
genotype depth: GenotypeDepth
  all individuals: 34498
  bin: 9.75e1
  variant carriers: 4776
genotype depth: GenotypeDepth
  all individuals: 2391
  bin: 8.25e1
  variant carriers: 85
genotype depth: GenotypeDepth
  all individuals: 1546
  bin: 3.25e1
  variant carriers: 56
genotype quality: GenotypeQuality
  all individuals: 3690
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 475
population: Other
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: DP

17-43333702-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43333702
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 43333702
    reference: chr 17
allele count: 1
allele frequency: 8.239132584121543e-6
allele num: 121372
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467901
  ensembl transcript: ENST00000588866
  gene symbol: SPATA32
  hgvsc: ENST00000588866.1:c.108+41A>G
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467344
  ensembl transcript: ENST00000586359
  gene symbol: SPATA32
  hgvsc: ENST00000586359.1:c.*626+41A>G
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588698
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588698.1:n.123+1117T>C
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000331532
  ensembl transcript: ENST00000331780
  gene symbol: SPATA32
  hgvsc: ENST00000331780.4:c.108+41A>G
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588160
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588160.1:n.195+1117T>C
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000585346
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000585346.1:n.134+1117T>C
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000592422
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000592422.1:n.230+1117T>C
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588504
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588504.1:n.68+8332T>C
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000591263
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000591263.1:n.163+1117T>C
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000590100
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000590100.1:n.68+8332T>C
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000442724
  ensembl transcript: ENST00000543122
  gene symbol: SPATA32
  hgvsc: ENST00000543122.1:c.45+41A>G
  variant of: http://identifiers.org/hgnc/26349
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2495
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2546
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2167
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2441
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1911
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1565
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2446
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1291
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32284
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2506
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2309
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum

17-43333718-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43333718
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 43333718
    reference: chr 17
allele count: 4
allele frequency: 3.295381522795802e-5
allele num: 121382
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588698
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588698.1:n.123+1133C>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000591263
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000591263.1:n.163+1133C>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000585346
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000585346.1:n.134+1133C>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000592422
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000592422.1:n.230+1133C>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000331532
  ensembl transcript: ENST00000331780
  gene symbol: SPATA32
  hgvsc: ENST00000331780.4:c.108+25G>A
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000590100
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000590100.1:n.68+8348C>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588504
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588504.1:n.68+8348C>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467901
  ensembl transcript: ENST00000588866
  gene symbol: SPATA32
  hgvsc: ENST00000588866.1:c.108+25G>A
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467344
  ensembl transcript: ENST00000586359
  gene symbol: SPATA32
  hgvsc: ENST00000586359.1:c.*626+25G>A
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588160
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588160.1:n.195+1133C>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000442724
  ensembl transcript: ENST00000543122
  gene symbol: SPATA32
  hgvsc: ENST00000543122.1:c.45+25G>A
  variant of: http://identifiers.org/hgnc/26349
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1344
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2446
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2167
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2546
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2495
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1415
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1666
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1913
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1566
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2441
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32284
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2506
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2309
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1711
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS

17-43333719-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43333719
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 43333719
    reference: chr 17
allele count: 20
allele frequency: 1.647609318878308e-4
allele num: 121388
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000331532
  ensembl transcript: ENST00000331780
  gene symbol: SPATA32
  hgvsc: ENST00000331780.4:c.108+24C>T
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000591263
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000591263.1:n.163+1134G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467344
  ensembl transcript: ENST00000586359
  gene symbol: SPATA32
  hgvsc: ENST00000586359.1:c.*626+24C>T
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588504
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588504.1:n.68+8349G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588698
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588698.1:n.123+1134G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000585346
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000585346.1:n.134+1134G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467901
  ensembl transcript: ENST00000588866
  gene symbol: SPATA32
  hgvsc: ENST00000588866.1:c.108+24C>T
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588160
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588160.1:n.195+1134G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000590100
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000590100.1:n.68+8349G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000592422
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000592422.1:n.230+1134G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000442724
  ensembl transcript: ENST00000543122
  gene symbol: SPATA32
  hgvsc: ENST00000543122.1:c.45+24C>T
  variant of: http://identifiers.org/hgnc/26349
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1416
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2545
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2441
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1912
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1662
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2504
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32286
  bin: 9.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2309
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2446
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2496
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2167
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1298
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/17-43333733-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43333733
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 43333733
    reference: chr 17
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000591263
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000591263.1:n.163+1148C>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467344
  ensembl transcript: ENST00000586359
  gene symbol: SPATA32
  hgvsc: ENST00000586359.1:c.*626+10G>T
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467901
  ensembl transcript: ENST00000588866
  gene symbol: SPATA32
  hgvsc: ENST00000588866.1:c.108+10G>T
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000592422
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000592422.1:n.230+1148C>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000331532
  ensembl transcript: ENST00000331780
  gene symbol: SPATA32
  hgvsc: ENST00000331780.4:c.108+10G>T
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588698
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588698.1:n.123+1148C>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000585346
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000585346.1:n.134+1148C>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588160
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588160.1:n.195+1148C>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588504
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588504.1:n.68+8363C>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000442724
  ensembl transcript: ENST00000543122
  gene symbol: SPATA32
  hgvsc: ENST00000543122.1:c.45+10G>T
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000590100
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000590100.1:n.68+8363C>A
  variant of: http://identifiers.org/hgnc/44359
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2311
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1302
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2446
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2546
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1670
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2507
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2166
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1415
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2443
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32279
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1913
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2495
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1382
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum

17-43333734-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43333734
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 43333734
    reference: chr 17
allele count: 3
allele frequency: 2.47133254250692e-5
allele num: 121392
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000442724
  ensembl transcript: ENST00000543122
  gene symbol: SPATA32
  hgvsc: ENST00000543122.1:c.45+9G>A
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588504
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588504.1:n.68+8364C>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467344
  ensembl transcript: ENST00000586359
  gene symbol: SPATA32
  hgvsc: ENST00000586359.1:c.*626+9G>A
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588160
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588160.1:n.195+1149C>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588698
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588698.1:n.123+1149C>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000331532
  ensembl transcript: ENST00000331780
  gene symbol: SPATA32
  hgvsc: ENST00000331780.4:c.108+9G>A
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467901
  ensembl transcript: ENST00000588866
  gene symbol: SPATA32
  hgvsc: ENST00000588866.1:c.108+9G>A
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000591263
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000591263.1:n.163+1149C>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000585346
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000585346.1:n.134+1149C>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000590100
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000590100.1:n.68+8364C>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000592422
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000592422.1:n.230+1149C>T
  variant of: http://identifiers.org/hgnc/44359
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2311
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1415
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1671
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1302
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2545
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2166
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2495
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2446
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1913
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2443
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2507
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32280
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: QD

17-43333742-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43333742
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 43333742
    reference: chr 17
allele count: 2
allele frequency: 1.647446457990115e-5
allele num: 121400
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000585346
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000585346.1:n.134+1157C>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000592422
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000592422.1:n.230+1157C>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000442724
  ensembl transcript: ENST00000543122
  gene symbol: SPATA32
  hgvsc: ENST00000543122.1:c.45+1G>A
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467901
  ensembl transcript: ENST00000588866
  gene symbol: SPATA32
  hgvsc: ENST00000588866.1:c.108+1G>A
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588504
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588504.1:n.68+8372C>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000590100
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000590100.1:n.68+8372C>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000331532
  ensembl transcript: ENST00000331780
  gene symbol: SPATA32
  hgvsc: ENST00000331780.4:c.108+1G>A
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588698
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588698.1:n.123+1157C>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000591263
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000591263.1:n.163+1157C>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467344
  ensembl transcript: ENST00000586359
  gene symbol: SPATA32
  hgvsc: ENST00000586359.1:c.*626+1G>A
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588160
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588160.1:n.195+1157C>T
  variant of: http://identifiers.org/hgnc/44359
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1913
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1416
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2547
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2443
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2311
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2494
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32280
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2507
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1679
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1568
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2166
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2445
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1713
  bin: 9.25e1
  variant carriers: 0
hgvs: c.108+1G>A
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

17-43333743-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43333743
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 43333743
    reference: chr 17
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000442724
  ensembl transcript: ENST00000543122
  gene symbol: SPATA32
  hgvsc: ENST00000543122.1:c.45G>A
  hgvsp: ENST00000543122.1:c.45G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467344
  ensembl transcript: ENST00000586359
  gene symbol: SPATA32
  hgvsc: ENST00000586359.1:c.*626G>A
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000331532
  ensembl transcript: ENST00000331780
  gene symbol: SPATA32
  hgvsc: ENST00000331780.4:c.108G>A
  hgvsp: ENST00000331780.4:c.108G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588698
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588698.1:n.123+1158C>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000590100
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000590100.1:n.68+8373C>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000585346
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000585346.1:n.134+1158C>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588504
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588504.1:n.68+8373C>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000592422
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000592422.1:n.230+1158C>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467901
  ensembl transcript: ENST00000588866
  gene symbol: SPATA32
  hgvsc: ENST00000588866.1:c.108G>A
  hgvsp: ENST00000588866.1:c.108G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588160
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588160.1:n.195+1158C>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000591263
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000591263.1:n.163+1158C>T
  variant of: http://identifiers.org/hgnc/44359
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2445
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1679
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2311
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2166
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2443
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32280
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1568
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1306
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1416
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2547
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2507
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1913
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.108G>A
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

17-43333749-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43333749
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 43333749
    reference: chr 17
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000592422
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000592422.1:n.230+1164T>C
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588698
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588698.1:n.123+1164T>C
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000585346
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000585346.1:n.134+1164T>C
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000590100
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000590100.1:n.68+8379T>C
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000442724
  ensembl transcript: ENST00000543122
  gene symbol: SPATA32
  hgvsc: ENST00000543122.1:c.39A>G
  hgvsp: ENST00000543122.1:c.39A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467901
  ensembl transcript: ENST00000588866
  gene symbol: SPATA32
  hgvsc: ENST00000588866.1:c.102A>G
  hgvsp: ENST00000588866.1:c.102A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588504
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588504.1:n.68+8379T>C
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000591263
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000591263.1:n.163+1164T>C
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000331532
  ensembl transcript: ENST00000331780
  gene symbol: SPATA32
  hgvsc: ENST00000331780.4:c.102A>G
  hgvsp: ENST00000331780.4:c.102A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467344
  ensembl transcript: ENST00000586359
  gene symbol: SPATA32
  hgvsc: ENST00000586359.1:c.*620A>G
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588160
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588160.1:n.195+1164T>C
  variant of: http://identifiers.org/hgnc/44359
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2494
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1340
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2312
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1914
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2547
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2167
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1420
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2446
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2443
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32280
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2506
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1681
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu34Glu
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff

17-43333758-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43333758
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 43333758
    reference: chr 17
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588160
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588160.1:n.195+1173T>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000591263
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000591263.1:n.163+1173T>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000585346
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000585346.1:n.134+1173T>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000442724
  ensembl transcript: ENST00000543122
  gene symbol: SPATA32
  hgvsc: ENST00000543122.1:c.30A>T
  hgvsp: ENST00000543122.1:c.30A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467901
  ensembl transcript: ENST00000588866
  gene symbol: SPATA32
  hgvsc: ENST00000588866.1:c.93A>T
  hgvsp: ENST00000588866.1:c.93A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588504
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588504.1:n.68+8388T>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467344
  ensembl transcript: ENST00000586359
  gene symbol: SPATA32
  hgvsc: ENST00000586359.1:c.*611A>T
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588698
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588698.1:n.123+1173T>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000590100
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000590100.1:n.68+8388T>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000592422
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000592422.1:n.230+1173T>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000331532
  ensembl transcript: ENST00000331780
  gene symbol: SPATA32
  hgvsc: ENST00000331780.4:c.93A>T
  hgvsp: ENST00000331780.4:c.93A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26349
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2446
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2547
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2506
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2313
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1679
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2443
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1914
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2494
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1344
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32280
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2168
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1418
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile31Ile
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum

17-43333759-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43333759
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 43333759
    reference: chr 17
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467344
  ensembl transcript: ENST00000586359
  gene symbol: SPATA32
  hgvsc: ENST00000586359.1:c.*610T>C
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000331532
  ensembl transcript: ENST00000331780
  gene symbol: SPATA32
  hgvsc: ENST00000331780.4:c.92T>C
  hgvsp: ENSP00000331532.4:p.Ile31Thr
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588698
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588698.1:n.123+1174A>G
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000590100
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000590100.1:n.68+8389A>G
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000592422
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000592422.1:n.230+1174A>G
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588504
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588504.1:n.68+8389A>G
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000442724
  ensembl transcript: ENST00000543122
  gene symbol: SPATA32
  hgvsc: ENST00000543122.1:c.29T>C
  hgvsp: ENSP00000442724.1:p.Ile10Thr
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467901
  ensembl transcript: ENST00000588866
  gene symbol: SPATA32
  hgvsc: ENST00000588866.1:c.92T>C
  hgvsp: ENSP00000467901.1:p.Ile31Thr
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588160
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588160.1:n.195+1174A>G
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000585346
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000585346.1:n.134+1174A>G
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000591263
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000591263.1:n.163+1174A>G
  variant of: http://identifiers.org/hgnc/44359
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2446
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1344
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2312
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1311
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1914
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2443
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2494
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1680
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1418
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1568
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2506
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2547
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2170
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32279
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ile31Thr
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: A
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

17-43333764-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43333764
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 43333764
    reference: chr 17
allele count: 8
allele frequency: 6.589351607801793e-5
allele num: 121408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588698
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588698.1:n.123+1179G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588160
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588160.1:n.195+1179G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000585346
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000585346.1:n.134+1179G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467901
  ensembl transcript: ENST00000588866
  gene symbol: SPATA32
  hgvsc: ENST00000588866.1:c.87C>T
  hgvsp: ENST00000588866.1:c.87C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467344
  ensembl transcript: ENST00000586359
  gene symbol: SPATA32
  hgvsc: ENST00000586359.1:c.*605C>T
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588504
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588504.1:n.68+8394G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000442724
  ensembl transcript: ENST00000543122
  gene symbol: SPATA32
  hgvsc: ENST00000543122.1:c.24C>T
  hgvsp: ENST00000543122.1:c.24C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000590100
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000590100.1:n.68+8394G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000591263
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000591263.1:n.163+1179G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000592422
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000592422.1:n.230+1179G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000331532
  ensembl transcript: ENST00000331780
  gene symbol: SPATA32
  hgvsc: ENST00000331780.4:c.87C>T
  hgvsp: ENST00000331780.4:c.87C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26349
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2494
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2446
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1483
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1344
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2547
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1424
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32280
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2444
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2170
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2311
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1568
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1913
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1314
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2506
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His29His
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

17-43333769-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43333769
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 43333769
    reference: chr 17
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000592422
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000592422.1:n.230+1184G>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000442724
  ensembl transcript: ENST00000543122
  gene symbol: SPATA32
  hgvsc: ENST00000543122.1:c.19C>A
  hgvsp: ENSP00000442724.1:p.Gln7Lys
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588698
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588698.1:n.123+1184G>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000591263
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000591263.1:n.163+1184G>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000590100
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000590100.1:n.68+8399G>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467344
  ensembl transcript: ENST00000586359
  gene symbol: SPATA32
  hgvsc: ENST00000586359.1:c.*600C>A
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588504
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588504.1:n.68+8399G>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000331532
  ensembl transcript: ENST00000331780
  gene symbol: SPATA32
  hgvsc: ENST00000331780.4:c.82C>A
  hgvsp: ENSP00000331532.4:p.Gln28Lys
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588160
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588160.1:n.195+1184G>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000585346
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000585346.1:n.134+1184G>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467901
  ensembl transcript: ENST00000588866
  gene symbol: SPATA32
  hgvsc: ENST00000588866.1:c.82C>A
  hgvsp: ENSP00000467901.1:p.Gln28Lys
  variant of: http://identifiers.org/hgnc/26349
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1573
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2444
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2175
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1664
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1502
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1331
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2447
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2507
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32280
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1328
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2493
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2315
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2547
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln28Lys
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

17-43333776-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43333776
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 43333776
    reference: chr 17
allele count: 1
allele frequency: 8.239811473113496e-6
allele num: 121362
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000442724
  ensembl transcript: ENST00000543122
  gene symbol: SPATA32
  hgvsc: ENST00000543122.1:c.12C>T
  hgvsp: ENST00000543122.1:c.12C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000331532
  ensembl transcript: ENST00000331780
  gene symbol: SPATA32
  hgvsc: ENST00000331780.4:c.75C>T
  hgvsp: ENST00000331780.4:c.75C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000585346
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000585346.1:n.134+1191G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000592422
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000592422.1:n.230+1191G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467901
  ensembl transcript: ENST00000588866
  gene symbol: SPATA32
  hgvsc: ENST00000588866.1:c.75C>T
  hgvsp: ENST00000588866.1:c.75C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000590100
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000590100.1:n.68+8406G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588698
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588698.1:n.123+1191G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467344
  ensembl transcript: ENST00000586359
  gene symbol: SPATA32
  hgvsc: ENST00000586359.1:c.*593C>T
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588160
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588160.1:n.195+1191G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588504
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588504.1:n.68+8406G>A
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000591263
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000591263.1:n.163+1191G>A
  variant of: http://identifiers.org/hgnc/44359
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2523
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2446
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32294
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2238
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2507
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2352
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1990
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1653
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2563
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2479
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1566
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1444
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp25Asp
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ

17-43333781-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43333781
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 43333781
    reference: chr 17
allele count: 15
allele frequency: 1.541053669762472e-4
allele num: 97336
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000592422
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000592422.1:n.230+1196C>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000331532
  ensembl transcript: ENST00000331780
  gene symbol: SPATA32
  hgvsc: ENST00000331780.4:c.70G>A
  hgvsp: ENSP00000331532.4:p.Asp24Asn
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467901
  ensembl transcript: ENST00000588866
  gene symbol: SPATA32
  hgvsc: ENST00000588866.1:c.70G>A
  hgvsp: ENSP00000467901.1:p.Asp24Asn
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000585346
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000585346.1:n.134+1196C>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000442724
  ensembl transcript: ENST00000543122
  gene symbol: SPATA32
  hgvsc: ENST00000543122.1:c.7G>A
  hgvsp: ENSP00000442724.1:p.Asp3Asn
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467344
  ensembl transcript: ENST00000586359
  gene symbol: SPATA32
  hgvsc: ENST00000586359.1:c.*588G>A
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000590100
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000590100.1:n.68+8411C>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588160
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588160.1:n.195+1196C>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588504
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588504.1:n.68+8411C>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000591263
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000591263.1:n.163+1196C>T
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588698
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588698.1:n.123+1196C>T
  variant of: http://identifiers.org/hgnc/44359
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2159
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1330
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 996
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2322
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31354
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1159
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1924
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2407
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2284
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2373
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2406
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: p.Asp24Asn
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum

17-43333785-AAGAC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 43333785
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 43333781
    reference: chr 17
allele count: 54733
allele frequency: 4.511011110012198e-1
allele num: 121332
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000590100
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000590100.1:n.68+8419_68+8422delCAGA
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467344
  ensembl transcript: ENST00000586359
  gene symbol: SPATA32
  hgvsc: ENST00000586359.1:c.*587-7_*587-4delGTCT
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000331532
  ensembl transcript: ENST00000331780
  gene symbol: SPATA32
  hgvsc: ENST00000331780.4:c.69-7_69-4delGTCT
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000467901
  ensembl transcript: ENST00000588866
  gene symbol: SPATA32
  hgvsc: ENST00000588866.1:c.69-7_69-4delGTCT
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000591263
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000591263.1:n.163+1204_163+1207delCAGA
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588160
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588160.1:n.195+1204_195+1207delCAGA
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000585346
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000585346.1:n.134+1204_134+1207delCAGA
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000184361
  ensembl protein: ENSP00000442724
  ensembl transcript: ENST00000543122
  gene symbol: SPATA32
  hgvsc: ENST00000543122.1:c.6-7_6-4delGTCT
  variant of: http://identifiers.org/hgnc/26349
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588698
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588698.1:n.123+1204_123+1207delCAGA
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000592422
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000592422.1:n.230+1204_230+1207delCAGA
  variant of: http://identifiers.org/hgnc/44359
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000267278
  ensembl transcript: ENST00000588504
  gene symbol: MAP3K14-AS1
  hgvsc: ENST00000588504.1:n.68+8419_68+8422delCAGA
  variant of: http://identifiers.org/hgnc/44359
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 4.75e1
  variant carriers: 432
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 2.75e1
  variant carriers: 103
genotype depth: GenotypeDepth
  all individuals: 2705
  bin: 8.25e1
  variant carriers: 1455
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 4.25e1
  variant carriers: 321
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 3.25e1
  variant carriers: 154
genotype depth: GenotypeDepth
  all individuals: 2587
  bin: 6.75e1
  variant carriers: 872
genotype depth: GenotypeDepth
  all individuals: 2484
  bin: 6.25e1
  variant carriers: 754
genotype depth: GenotypeDepth
  all individuals: 33152
  bin: 9.75e1
  variant carriers: 30410
genotype depth: GenotypeDepth
  all individuals: 2796
  bin: 8.75e1
  variant carriers: 1821
genotype depth: GenotypeDepth
  all individuals: 1736
  bin: 5.25e1
  variant carriers: 533
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2743
  bin: 9.25e1
  variant carriers: 1960
genotype depth: GenotypeDepth
  all individuals: 2870
  bin: 7.25e1
  variant carriers: 1163
genotype depth: GenotypeDepth
  all individuals: 2711
  bin: 7.75e1
  variant carriers: 1201
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 3.75e1
  variant carriers: 249
genotype depth: GenotypeDepth
  all individuals: 2167
  bin: 5.75e1
  variant carriers: 637
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 2.25e1
  variant carriers: 42
genotype quality: GenotypeQuality
hgvs: c.69-7_69-4delGTCT
num of homozygotes: 12648
reference allele: AAGAC

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37110
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1654
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3416
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8797
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2908
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1095
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2740
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2505
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10318
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.15606936416185e-4
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66482
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.65e0

MQ
type: SiteQuality
SIO_000300: 5.963e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.904e0

QD
type: SiteQuality
SIO_000300: 1.315e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.309e0

VQSLOD
type: SiteQuality
SIO_000300: 1.6e-2

DP
type: SiteQuality
SIO_000300: 1.768891e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.15e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.85e-1

GenotypeQuality
all individuals: 18
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 308
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1654
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1094
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2905
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2740
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3414
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2505
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37103
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8799
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.425418384671356e-4
allele num: 16492
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10304
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504709741490866e-5
allele num: 66458
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.46e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.976e1

VQSLOD
type: SiteQuality
SIO_000300: 2.72e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.99e-1

QD
type: SiteQuality
SIO_000300: 1.334e1

DP
type: SiteQuality
SIO_000300: 1.768564e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 6.94e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.74e-1

GenotypeQuality
all individuals: 2907
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1094
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37039
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2735
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 363
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1654
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3410
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2503
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8796
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10292
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66412
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.661008141347653e-5
allele num: 11546
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.612e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.199999999999999e-2

FS
type: SiteQuality
SIO_000300: 4.05e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.9e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.824e0

MQ
type: SiteQuality
SIO_000300: 5.973e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -2.395e0

QD
type: SiteQuality
SIO_000300: 1.314e1

DP
type: SiteQuality
SIO_000300: 1.767006e6

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 389
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 37014
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2906
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1094
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2735
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8794
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2503
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3410
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1654
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.064281382656155e-5
allele num: 16490
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66396
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10294
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.25e-1

FS
type: SiteQuality
SIO_000300: 3.677e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.3e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.66e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.66e-1

QD
type: SiteQuality
SIO_000300: 1.437e1

DP
type: SiteQuality
SIO_000300: 1.766323e6

BaseQRankSum
type: SiteQuality
SIO_000300: 5.25e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3410
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8791
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2503
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2906
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1094
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2734
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 20
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1653
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 402
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37006
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10292
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.519161243673174e-5
allele num: 66384
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.765944e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.846e0

MQRankSum
type: SiteQuality
SIO_000300: 1.33e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.4e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.600000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.97e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 1.402e0

VQSLOD
type: SiteQuality
SIO_000300: 3.04e0

QD
type: SiteQuality
SIO_000300: 1.476e1

GenotypeQuality
all individuals: 1653
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8789
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 413
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2732
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 36986
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1094
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2503
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2905
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3410
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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African
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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Other
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European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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BaseQRankSum
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FS
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ReadPosRankSum
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DP
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VQSLOD
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ClippingRankSum
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QD
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MQRankSum
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InbreedingCoeff
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

Latino
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European (Non-Finnish)
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East Asian
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African
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South Asian
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Other
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MQ
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DP
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FS
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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Latino
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African
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European (Finnish)
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European (Non-Finnish)
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East Asian
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South Asian
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VQSLOD
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MQRankSum
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ClippingRankSum
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DP
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FS
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QD
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MQ
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 66302
num of homozygotes: 0

African
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South Asian
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Other
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Latino
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East Asian
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European (Finnish)
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BaseQRankSum
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FS
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VQSLOD
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MQ
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QD
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ReadPosRankSum
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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Other
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Latino
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South Asian
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East Asian
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European (Non-Finnish)
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QD
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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FS
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DP
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ReadPosRankSum
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MQRankSum
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MQ
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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Latino
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European (Non-Finnish)
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East Asian
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South Asian
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European (Finnish)
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QD
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MQ
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MQRankSum
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DP
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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FS
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ReadPosRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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European (Non-Finnish)
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African
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Latino
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Other
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South Asian
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ClippingRankSum
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InbreedingCoeff
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DP
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MQ
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MQRankSum
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QD
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FS
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VQSLOD
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BaseQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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African
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European (Finnish)
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Latino
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European (Non-Finnish)
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Other
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MQ
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QD
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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DP
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FS
type: SiteQuality
SIO_000300: 6.68e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.3e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.49e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.45e-1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2673
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1091
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66260
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

African
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allele count: 2
allele frequency: 1.950078003120125e-4
allele num: 10256
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.963e1

BaseQRankSum
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SIO_000300: 3.25e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.93e0

FS
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SIO_000300: 0.0e0

ClippingRankSum
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SIO_000300: -1.039e0

InbreedingCoeff
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SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -8.49e-1

QD
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SIO_000300: 1.545e1

DP
type: SiteQuality
SIO_000300: 1.760577e6

VQSLOD
type: SiteQuality
SIO_000300: 4.6e-3

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 17

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66262
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

African
type: Population
allele count: 17
allele frequency: 1.657889604056953e-3
allele num: 10254
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.37e-1

MQRankSum
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
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SIO_000300: 1.82e0

QD
type: SiteQuality
SIO_000300: 1.484e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.13e-1

DP
type: SiteQuality
SIO_000300: 1.761242e6

MQ
type: SiteQuality
SIO_000300: 5.965e1

FS
type: SiteQuality
SIO_000300: 3.346e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.66e0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.020691738408095e-5
allele num: 66210
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10246
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.804e0

MQRankSum
type: SiteQuality
SIO_000300: 4.72e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.100000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.759719e6

VQSLOD
type: SiteQuality
SIO_000300: 2.6e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

QD
type: SiteQuality
SIO_000300: 1.13e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10246
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.510345869204048e-5
allele num: 66210
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.13e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.804e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.9e-2

MQ
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SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.100000000000001e-1

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 4.72e-1

DP
type: SiteQuality
SIO_000300: 1.759719e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1090
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.074596039363382e-5
allele num: 16462
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66164
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10230
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.498e0

VQSLOD
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InbreedingCoeff
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DP
type: SiteQuality
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BaseQRankSum
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ClippingRankSum
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SIO_000300: -1.922e0

ReadPosRankSum
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.978e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10220
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.158211721102618e-4
allele num: 8634
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16458
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66114
num of homozygotes: 0

DP
type: SiteQuality
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MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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FS
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ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
type: SiteQuality
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MQRankSum
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QD
type: SiteQuality
SIO_000300: 1.184e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.077549532028686e-5
allele num: 16454
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10186
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66034
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11502
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
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MQRankSum
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QD
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BaseQRankSum
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FS
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VQSLOD
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ReadPosRankSum
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DP
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MQ
type: SiteQuality
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InbreedingCoeff
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.514921981517952e-5
allele num: 66010
num of homozygotes: 0

Other
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allele count: 1
allele frequency: 1.111111111111111e-3
allele num: 900
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
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ClippingRankSum
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DP
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ReadPosRankSum
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QD
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SIO_000300: 1.411e1

BaseQRankSum
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SIO_000300: 3.15e0

MQRankSum
type: SiteQuality
SIO_000300: 1.9e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 2.06e0

MQ
type: SiteQuality
SIO_000300: 5.951e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.515105602860519e-5
allele num: 66002
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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BaseQRankSum
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MQRankSum
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MQ
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ClippingRankSum
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VQSLOD
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DP
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SIO_000300: 1.751977e6

QD
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FS
type: SiteQuality
SIO_000300: 3.457e0

ReadPosRankSum
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SIO_000300: 1.47e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.034348828741352e-5
allele num: 65912
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10148
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11484
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.948e1

ClippingRankSum
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SIO_000300: -1.208e0

FS
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SIO_000300: 1.387e0

QD
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VQSLOD
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MQRankSum
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DP
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SIO_000300: 1.748464e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.5e0

InbreedingCoeff
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SIO_000300: -5.999999999999999e-4

BaseQRankSum
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SIO_000300: -2.033e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.141603437242893e-5
allele num: 65634
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11438
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
SIO_000300: 3.46e0

MQRankSum
type: SiteQuality
SIO_000300: -5.42e-1

VQSLOD
type: SiteQuality
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InbreedingCoeff
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QD
type: SiteQuality
SIO_000300: 1.344e1

MQ
type: SiteQuality
SIO_000300: 5.967e1

DP
type: SiteQuality
SIO_000300: 1.736216e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.86e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.16e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 209

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 8
allele frequency: 7.000350017500875e-4
allele num: 11428
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.105751618024179e-5
allele num: 16378
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.525041176111755e-5
allele num: 65572
num of homozygotes: 0

African
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allele count: 205
allele frequency: 2.052462955546656e-2
allele num: 9988
num of homozygotes: 4

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8574
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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ReadPosRankSum
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SIO_000300: 4.96e-1

BaseQRankSum
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FS
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SIO_000300: 0.0e0

MQRankSum
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ClippingRankSum
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InbreedingCoeff
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QD
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DP
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MQ
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SIO_000300: 5.978e1

VQSLOD
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SIO_000300: 6.74e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16356
num of homozygotes: 0

Latino
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allele frequency: 8.776549060909251e-5
allele num: 11394
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 9932
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
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QD
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InbreedingCoeff
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MQ
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MQRankSum
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FS
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VQSLOD
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ClippingRankSum
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ReadPosRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11394
num of homozygotes: 0

African
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East Asian
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allele frequency: 3.51288056206089e-4
allele num: 8540
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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Other
type: Population
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FS
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QD
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InbreedingCoeff
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DP
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MQRankSum
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VQSLOD
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ReadPosRankSum
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MQ
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ClippingRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11266
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6492
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.176080041997344e-5
allele num: 64766
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
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allele frequency: 0.0e0
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Other
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num of homozygotes: 0

DP
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SIO_000300: 1.699415e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.93e-1

QD
type: SiteQuality
SIO_000300: 7.28e0

FS
type: SiteQuality
SIO_000300: 1.854e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.44e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.89e0

MQ
type: SiteQuality
SIO_000300: 5.806e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.43e0

VQSLOD
type: SiteQuality
SIO_000300: 1.79e0

GenotypeQuality
all individuals: 86
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.544020010499336e-5
allele num: 64766
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6492
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.93e-1

VQSLOD
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BaseQRankSum
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MQ
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QD
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MQRankSum
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InbreedingCoeff
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SIO_000300: 2.7e-3

FS
type: SiteQuality
SIO_000300: 1.854e0

DP
type: SiteQuality
SIO_000300: 1.699415e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.44e-1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8434
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9784
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11266
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6492
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.544020010499336e-5
allele num: 64766
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16254
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.43e0

DP
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MQRankSum
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SIO_000300: -1.89e0

InbreedingCoeff
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FS
type: SiteQuality
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ClippingRankSum
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SIO_000300: -2.44e-1

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.806e1

ReadPosRankSum
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SIO_000300: 1.93e-1

QD
type: SiteQuality
SIO_000300: 7.28e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.655519502019734e-5
allele num: 60404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 812
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7848
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8956
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15710
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5996
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10144
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.772e0

InbreedingCoeff
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QD
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SIO_000300: 1.115e1

ClippingRankSum
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SIO_000300: 3.08e-1

BaseQRankSum
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SIO_000300: -1.249e0

DP
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SIO_000300: 1.479005e6

MQRankSum
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SIO_000300: 1.67e0

VQSLOD
type: SiteQuality
SIO_000300: -1.138e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.03e-1

MQ
type: SiteQuality
SIO_000300: 5.772e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15716
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 812
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8978
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10148
num of homozygotes: 0

European (Finnish)
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allele count: 1
allele frequency: 1.667222407469156e-4
allele num: 5998
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 60454
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.439e0

DP
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ReadPosRankSum
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FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
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SIO_000300: 5.12e-1

InbreedingCoeff
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SIO_000300: -2.3e-3

MQRankSum
type: SiteQuality
SIO_000300: -5.610000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.827e1

QD
type: SiteQuality
SIO_000300: 1.213e1

VQSLOD
type: SiteQuality
SIO_000300: -3.121e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9506
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15448
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 796
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 5.176697956929873e-5
allele num: 57952
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7478
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5746
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ClippingRankSum
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SIO_000300: -8.05e-1

InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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MQ
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MQRankSum
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FS
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QD
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DP
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SIO_000300: 1.355496e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15432
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9476
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.728967115045472e-5
allele num: 57838
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7466
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Other
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ClippingRankSum
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MQRankSum
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SIO_000300: -2.2e-2

BaseQRankSum
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MQ
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FS
type: SiteQuality
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InbreedingCoeff
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DP
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QD
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VQSLOD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.847199645337668e-5
allele num: 54136
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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Other
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BaseQRankSum
type: SiteQuality
SIO_000300: -5.27e-1

FS
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InbreedingCoeff
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VQSLOD
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QD
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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MQ
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 4.128307806630062e-5
allele num: 48446
num of homozygotes: 0

East Asian
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South Asian
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num of homozygotes: 0

Other
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Latino
type: Population
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allele frequency: 0.0e0
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African
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BaseQRankSum
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ClippingRankSum
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MQ
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MQRankSum
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DP
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SIO_000300: 1.065811e6

FS
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InbreedingCoeff
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SIO_000300: -6.5e-3

QD
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ReadPosRankSum
type: SiteQuality
SIO_000300: -1.002e0

VQSLOD
type: SiteQuality
SIO_000300: 4.1e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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African
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European (Non-Finnish)
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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East Asian
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MQ
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BaseQRankSum
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VQSLOD
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MQRankSum
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InbreedingCoeff
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FS
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DP
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QD
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ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

South Asian
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East Asian
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African
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European (Non-Finnish)
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Latino
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European (Finnish)
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DP
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ClippingRankSum
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MQ
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FS
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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QD
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
allele num: 12932
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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European (Finnish)
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Other
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VQSLOD
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SIO_000300: 5.94e-1

InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
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DP
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MQ
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FS
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MQRankSum
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3240
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 34782
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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Latino
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South Asian
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Other
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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MQ
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VQSLOD
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ClippingRankSum
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QD
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FS
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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Latino
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African
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South Asian
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Other
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MQRankSum
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BaseQRankSum
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VQSLOD
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FS
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InbreedingCoeff
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QD
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DP
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ClippingRankSum
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MQ
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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African
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Other
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South Asian
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European (Finnish)
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European (Non-Finnish)
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
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MQRankSum
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MQ
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BaseQRankSum
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DP
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FS
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Other
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African
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Latino
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European (Non-Finnish)
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South Asian
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East Asian
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DP
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FS
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InbreedingCoeff
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ClippingRankSum
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SIO_000300: 8.95e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.453e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.71e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.05e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.88e-1

QD
type: SiteQuality
SIO_000300: 9.42e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 3237
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 64
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
all individuals: 89
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 5.75e1
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GenotypeQuality
all individuals: 4369
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 591
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2482
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1706
bin: 2.5e0
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GenotypeQuality
all individuals: 2175
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 898
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 373
bin: 9.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2940
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 954
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1632
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1236
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9828
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 320
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 6.151574803149606e-5
allele num: 16256
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.95e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.05e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.17e-2

MQRankSum
type: SiteQuality
SIO_000300: -2.71e-1

QD
type: SiteQuality
SIO_000300: 9.42e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -3.453e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.88e-1

DP
type: SiteQuality
SIO_000300: 5.16941e5

GenotypeQuality
all individuals: 2533
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 5.75e1
variant carriers: 1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 1

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 3.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 563
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 6.218905472636816e-4
allele num: 1608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 314
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16026
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.475247524752475e-3
allele num: 1212
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9770
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2882
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.07e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.42e1

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.57e-2

FS
type: SiteQuality
SIO_000300: 3.586e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.2e-1

DP
type: SiteQuality
SIO_000300: 5.10269e5

GenotypeQuality
all individuals: 2632
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21717
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 373
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1220
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.029442042413012e-4
allele num: 9714
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 316
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15974
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2872
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1616
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.45e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -6.33e-1

MQ
type: SiteQuality
SIO_000300: 5.766e1

MQRankSum
type: SiteQuality
SIO_000300: 3.65e-1

FS
type: SiteQuality
SIO_000300: 2.43e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.65e-1

QD
type: SiteQuality
SIO_000300: 6.34e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.33e-1

DP
type: SiteQuality
SIO_000300: 5.06961e5

VQSLOD
type: SiteQuality
SIO_000300: -1.265e0

GenotypeQuality
all individuals: 59
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19655
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 139
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variant carriers: 0

GenotypeQuality
all individuals: 4517
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 274
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variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 160
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variant carriers: 0

GenotypeQuality
all individuals: 1198
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2677
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variant carriers: 0

GenotypeQuality
all individuals: 373
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 429
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2780
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variant carriers: 0

GenotypeQuality
all individuals: 243
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variant carriers: 0

GenotypeQuality
all individuals: 17814
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4714
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1730
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9414
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2702
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 310
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1182
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 796
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 1.259445843828715e-3
allele num: 1588
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15256
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.89232e5

ClippingRankSum
type: SiteQuality
SIO_000300: -7.11e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.739e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 5.44e-1

QD
type: SiteQuality
SIO_000300: 8.890000000000001e0

FS
type: SiteQuality
SIO_000300: 4.372e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.467e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.63e-2

GenotypeQuality
all individuals: 1858
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21110
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variant carriers: 0

GenotypeQuality
all individuals: 152
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variant carriers: 0

GenotypeQuality
all individuals: 1201
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 2715
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variant carriers: 0

GenotypeQuality
all individuals: 417
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variant carriers: 0

GenotypeQuality
all individuals: 59
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GenotypeQuality
all individuals: 78
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variant carriers: 0

GenotypeQuality
all individuals: 371
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variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1186
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 308
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2710
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1590
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9362
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15340
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.265e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.212e1

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

DP
type: SiteQuality
SIO_000300: 4.8992e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.23e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.55e-2

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 518
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variant carriers: 0

GenotypeQuality
all individuals: 20871
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1196
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 4.613762193514369e-4
allele num: 15172
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 290
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1624
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.41e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.46e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.889999999999999e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.66e-1

DP
type: SiteQuality
SIO_000300: 4.90935e5

MQRankSum
type: SiteQuality
SIO_000300: -4.23e-1

FS
type: SiteQuality
SIO_000300: 2.052e0

QD
type: SiteQuality
SIO_000300: 1.132e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.073e0

GenotypeQuality
all individuals: 5921
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 325
bin: 5.25e1
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GenotypeQuality
all individuals: 454
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1184
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2620
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 6.623393826996953e-5
allele num: 15098
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1624
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 288
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.184e0

FS
type: SiteQuality
SIO_000300: 1.515e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.45e-2

VQSLOD
type: SiteQuality
SIO_000300: -7.991e-1

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.465e1

ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -7.29e-1

QD
type: SiteQuality
SIO_000300: 1.072e1

DP
type: SiteQuality
SIO_000300: 4.92663e5

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 49
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GenotypeQuality
all individuals: 1375
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GenotypeQuality
all individuals: 1645
bin: 9.25e1
variant carriers: 0

South Asian
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allele count: 3
allele frequency: 1.818181818181818e-4
allele num: 16500
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66694
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.771e0

DP
type: SiteQuality
SIO_000300: 6.154925e6

FS
type: SiteQuality
SIO_000300: 6.48e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.801e0

MQRankSum
type: SiteQuality
SIO_000300: 8.49e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.756e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.46e0

QD
type: SiteQuality
SIO_000300: 1.022e1

GenotypeQuality
all individuals: 36
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 25

GenotypeQuality
all individuals: 2079
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variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.199436264955471e-4
allele num: 66698
num of homozygotes: 0

African
type: Population
allele count: 16
allele frequency: 1.537574476263694e-3
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.477e0

MQRankSum
type: SiteQuality
SIO_000300: 5.33e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.46e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.96e0

FS
type: SiteQuality
SIO_000300: 6.04e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 1.352e1

MQ
type: SiteQuality
SIO_000300: 5.943e1

DP
type: SiteQuality
SIO_000300: 6.156196e6

GenotypeQuality
all individuals: 2028
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 5743

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

Other
type: Population
allele count: 30
allele frequency: 3.303964757709251e-2
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 3006
allele frequency: 2.888718047280415e-1
allele num: 10406
num of homozygotes: 418

European (Finnish)
type: Population
allele count: 269
allele frequency: 4.067130329603871e-2
allele num: 6614
num of homozygotes: 10

Latino
type: Population
allele count: 255
allele frequency: 2.202452927966834e-2
allele num: 11578
num of homozygotes: 4

European (Non-Finnish)
type: Population
allele count: 2042
allele frequency: 3.061377469940931e-2
allele num: 66702
num of homozygotes: 27

East Asian
type: Population
allele count: 5
allele frequency: 5.777675063554426e-4
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 615
allele frequency: 3.726820991394982e-2
allele num: 16502
num of homozygotes: 16

QD
type: SiteQuality
SIO_000300: 1.492e1

MQRankSum
type: SiteQuality
SIO_000300: 6.909999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.913e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.34e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.059e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.96e-1

FS
type: SiteQuality
SIO_000300: 2.794e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.53e-1

DP
type: SiteQuality
SIO_000300: 6.33025e6

GenotypeQuality
all individuals: 14
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3820
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 14
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 26
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 25
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variant carriers: 0

GenotypeQuality
all individuals: 31
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GenotypeQuality
all individuals: 2851
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variant carriers: 0

GenotypeQuality
all individuals: 2096
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variant carriers: 0

GenotypeQuality
all individuals: 1708
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
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variant carriers: 0

GenotypeQuality
all individuals: 43
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variant carriers: 0

GenotypeQuality
all individuals: 1391
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1051
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499160470136723e-5
allele num: 66704
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.72e0

QD
type: SiteQuality
SIO_000300: 1.028e1

MQ
type: SiteQuality
SIO_000300: 5.574e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.61e-1

FS
type: SiteQuality
SIO_000300: 9.6e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.48e-1

DP
type: SiteQuality
SIO_000300: 6.059317e6

VQSLOD
type: SiteQuality
SIO_000300: -3.55e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.45e-1

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 45307
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variant carriers: 4

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 14
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2306
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variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 2107
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1057
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 2867
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66716
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.922337562475971e-4
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.28e-1

MQ
type: SiteQuality
SIO_000300: 5.869e1

DP
type: SiteQuality
SIO_000300: 6.062031e6

MQRankSum
type: SiteQuality
SIO_000300: 5.4e-1

QD
type: SiteQuality
SIO_000300: 1.435e1

VQSLOD
type: SiteQuality
SIO_000300: 2.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.3e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.66e-1

FS
type: SiteQuality
SIO_000300: 4.125e0

GenotypeQuality
all individuals: 14
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variant carriers: 0

GenotypeQuality
all individuals: 3921
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 10
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 45308
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variant carriers: 19

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.454828122300915e-4
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.04916067146283e-4
allele num: 66720
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 9
allele frequency: 1.039981511439797e-3
allele num: 8654
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.06e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.69e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.47e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -8.78e-1

FS
type: SiteQuality
SIO_000300: 5.31e-1

MQ
type: SiteQuality
SIO_000300: 5.864e1

MQRankSum
type: SiteQuality
SIO_000300: 1.27e-1

QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 6.062763e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 10
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variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66728
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 6.062265e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
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QD
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MQ
type: SiteQuality
SIO_000300: 5.813e1

VQSLOD
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2301
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.49599856128046e-5
allele num: 66726
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.771e1

FS
type: SiteQuality
SIO_000300: 1.101e0

MQRankSum
type: SiteQuality
SIO_000300: -7.08e-1

ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
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BaseQRankSum
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DP
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SIO_000300: 6.062231e6

QD
type: SiteQuality
SIO_000300: 1.117e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
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num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10406
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66728
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
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VQSLOD
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DP
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BaseQRankSum
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MQ
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ClippingRankSum
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InbreedingCoeff
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SIO_000300: 0.0e0

ReadPosRankSum
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MQRankSum
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QD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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East Asian
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South Asian
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African
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European (Non-Finnish)
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Latino
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VQSLOD
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MQ
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FS
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BaseQRankSum
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MQRankSum
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QD
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InbreedingCoeff
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DP
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SIO_000300: 6.062493e6

ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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African
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Latino
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European (Finnish)
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European (Non-Finnish)
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Other
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ReadPosRankSum
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QD
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MQ
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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FS
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MQRankSum
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DP
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InbreedingCoeff
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SIO_000300: 0.0e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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East Asian
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South Asian
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European (Finnish)
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Latino
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num of homozygotes: 0

European (Non-Finnish)
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InbreedingCoeff
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DP
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VQSLOD
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MQ
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BaseQRankSum
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QD
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ReadPosRankSum
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FS
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MQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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South Asian
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European (Non-Finnish)
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European (Finnish)
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Latino
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BaseQRankSum
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MQRankSum
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QD
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FS
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ReadPosRankSum
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DP
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InbreedingCoeff
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VQSLOD
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MQ
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 8

European (Non-Finnish)
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num of homozygotes: 0

African
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European (Finnish)
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Latino
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East Asian
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Other
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South Asian
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
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FS
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MQRankSum
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DP
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MQ
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VQSLOD
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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East Asian
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European (Finnish)
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African
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Other
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European (Non-Finnish)
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VQSLOD
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ClippingRankSum
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FS
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DP
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MQRankSum
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InbreedingCoeff
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MQ
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BaseQRankSum
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 45284
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 37
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66704
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.059871530723549e-5
allele num: 16502
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.318e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.21e0

VQSLOD
type: SiteQuality
SIO_000300: -1.562e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 9.502000000000001e0

QD
type: SiteQuality
SIO_000300: 1.151e1

DP
type: SiteQuality
SIO_000300: 6.07899e6

MQRankSum
type: SiteQuality
SIO_000300: 7.6e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.78e0

MQ
type: SiteQuality
SIO_000300: 5.767e1

GenotypeDepth
all individuals: 2393
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 970
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4422
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 738
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 959
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2826
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1066
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 431
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 637
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 467
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 458
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 662
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43245
bin: 9.75e1
variant carriers: 15

GenotypeQuality
all individuals: 66
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 621
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 15
allele frequency: 1.158480074142725e-3
allele num: 12948
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5312
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 764
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9374
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9664
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 51310
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7964
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.311e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.493e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.56e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.084e0

MQ
type: SiteQuality
SIO_000300: 5.861e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 6.173906e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.78e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.89e-1

GenotypeQuality
all individuals: 194
bin: 7.25e1
variant carriers: 22

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 8

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 4

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 10

GenotypeQuality
all individuals: 502
bin: 6.25e1
variant carriers: 20