19-42388555-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42388555
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42388555
    reference: chr 19
allele count: 2
allele frequency: 1.797332758186851e-5
allele num: 111276
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.21G>A
  hgvsp: ENSP00000337261.3:p.Trp7Ter
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.21G>A
  hgvsp: ENSP00000367394.3:p.Trp7Ter
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.-20+1199G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600387
  gene symbol: ARHGEF1
  hgvsc: ENST00000600387.1:n.117+1199G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.-20+1199G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000596957
  gene symbol: ARHGEF1
  hgvsc: ENST00000596957.1:n.66+1199G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.-20+1199G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.107+1199G>A
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13770
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20602
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3154
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3595
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4483
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6226
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2022
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1516
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5936
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1233
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 981
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1114
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6109
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Trp7Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum

http://identifiers.org/exac.variant/19-42388559-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42388559
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42388559
    reference: chr 19
allele count: 1
allele frequency: 8.98311174991017e-6
allele num: 111320
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.-20+1203A>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.107+1203A>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.25A>C
  hgvsp: ENSP00000367394.3:p.Ser9Arg
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000596957
  gene symbol: ARHGEF1
  hgvsc: ENST00000596957.1:n.66+1203A>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.-20+1203A>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.25A>C
  hgvsp: ENSP00000337261.3:p.Ser9Arg
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600387
  gene symbol: ARHGEF1
  hgvsc: ENST00000600387.1:n.117+1203A>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.-20+1203A>C
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3777
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20401
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2021
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13814
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4431
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3152
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1516
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6211
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1691
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2411
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1136
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 910
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ser9Arg
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum

19-42388576-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42388576
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42388576
    reference: chr 19
allele count: 1
allele frequency: 9.003007004339449e-6
allele num: 111074
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000596957
  gene symbol: ARHGEF1
  hgvsc: ENST00000596957.1:n.66+1220C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.107+1220C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.26+16C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.26+16C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.-20+1220C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600387
  gene symbol: ARHGEF1
  hgvsc: ENST00000600387.1:n.117+1220C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.-20+1220C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.-20+1220C>T
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3147
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13792
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1859
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17098
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2022
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6217
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6237
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4477
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1517
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1226
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 905
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1666
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1845
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2004
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

19-42388606-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42388606
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42388606
    reference: chr 19
allele count: 1
allele frequency: 9.212005085026807e-6
allele num: 108554
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.-20+1250G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.26+46G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.26+46G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.-20+1250G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000596957
  gene symbol: ARHGEF1
  hgvsc: ENST00000596957.1:n.66+1250G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.107+1250G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.-20+1250G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600387
  gene symbol: ARHGEF1
  hgvsc: ENST00000600387.1:n.117+1250G>A
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10464
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9070
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8544
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5273
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3098
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2017
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5221
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10896
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2457
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 787
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 890
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6525
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1889
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5258
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4899
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

19-42388609-C-CTCCCT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42388609
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42388614
    reference: chr 19
allele count: 1
allele frequency: 9.246759010966656e-6
allele num: 108146
alternate allele: CTCCCT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.-20+1257_-20+1258insTTCCC
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.-20+1257_-20+1258insTTCCC
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600387
  gene symbol: ARHGEF1
  hgvsc: ENST00000600387.1:n.117+1257_117+1258insTTCCC
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000596957
  gene symbol: ARHGEF1
  hgvsc: ENST00000596957.1:n.66+1257_66+1258insTTCCC
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.-20+1257_-20+1258insTTCCC
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.26+53_26+54insTTCCC
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.26+53_26+54insTTCCC
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.107+1257_107+1258insTTCCC
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11208
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8350
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5331
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2015
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5143
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10409
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9037
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3090
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2103
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1610
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8678
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1561
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 886
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2517
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

19-42388611-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42388611
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42388611
    reference: chr 19
allele count: 1
allele frequency: 9.339509862522414e-6
allele num: 107072
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.-20+1255C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000596957
  gene symbol: ARHGEF1
  hgvsc: ENST00000596957.1:n.66+1255C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.107+1255C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.26+51C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.-20+1255C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.-20+1255C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600387
  gene symbol: ARHGEF1
  hgvsc: ENST00000600387.1:n.117+1255C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.26+51C>T
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1511
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9034
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10337
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2011
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11192
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3072
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5419
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4995
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8527
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1608
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 885
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1592
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4957
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2362
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6283
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4613
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1091
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

19-42388612-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42388612
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42388612
    reference: chr 19
allele count: 1
allele frequency: 9.327662114767555e-6
allele num: 107208
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.-20+1256C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.26+52C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.107+1256C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.26+52C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.-20+1256C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.-20+1256C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600387
  gene symbol: ARHGEF1
  hgvsc: ENST00000600387.1:n.117+1256C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000596957
  gene symbol: ARHGEF1
  hgvsc: ENST00000596957.1:n.66+1256C>T
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8560
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10315
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4992
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3073
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11161
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2012
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1511
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5393
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9080
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3482
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 883
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6364
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1435
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2579
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3035
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1651
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1614
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: QD

19-42392085-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42392085
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42392085
    reference: chr 19
allele count: 1
allele frequency: 9.672863748041246e-6
allele num: 103382
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.-19-50T>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.27-50T>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.27-50T>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.-19-50T>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.-19-50T>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.108-50T>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600387
  gene symbol: ARHGEF1
  hgvsc: ENST00000600387.1:n.118-50T>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000596957
  gene symbol: ARHGEF1
  hgvsc: ENST00000596957.1:n.67-4011T>C
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10175
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16305
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7476
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17194
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3967
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7270
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6877
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4366
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 763
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1587
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1098
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: European (Finnish)
reference allele: T
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP

19-42392088-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42392088
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42392088
    reference: chr 19
allele count: 1
allele frequency: 9.67305088024763e-6
allele num: 103380
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.-19-47G>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.27-47G>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.-19-47G>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600387
  gene symbol: ARHGEF1
  hgvsc: ENST00000600387.1:n.118-47G>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.-19-47G>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000596957
  gene symbol: ARHGEF1
  hgvsc: ENST00000596957.1:n.67-4008G>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.108-47G>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.27-47G>T
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17095
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7409
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11644
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1410
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14878
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4060
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1226
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 789
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7301
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 736
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2972
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7212
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2833
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: MQ

19-42392090-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42392090
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42392090
    reference: chr 19
allele count: 8
allele frequency: 7.717538105344394e-5
allele num: 103660
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.27-45C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.108-45C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.-19-45C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.-19-45C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.27-45C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.-19-45C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600387
  gene symbol: ARHGEF1
  hgvsc: ENST00000600387.1:n.118-45C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000596957
  gene symbol: ARHGEF1
  hgvsc: ENST00000596957.1:n.67-4006C>T
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4362
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7319
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13059
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13424
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16879
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7525
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7100
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 707
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3683
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5241
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 953
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1047
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum

19-42392091-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42392091
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42392091
    reference: chr 19
allele count: 4
allele frequency: 3.863092018851889e-5
allele num: 103544
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.27-44G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.27-44G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.108-44G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.-19-44G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.-19-44G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.-19-44G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000596957
  gene symbol: ARHGEF1
  hgvsc: ENST00000596957.1:n.67-4005G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600387
  gene symbol: ARHGEF1
  hgvsc: ENST00000600387.1:n.118-44G>A
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4587
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7269
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15075
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16559
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11494
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1573
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2984
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 3117
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1601
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6874
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 721
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 784
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1070
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum

19-42392094-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42392094
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42392094
    reference: chr 19
allele count: 4
allele frequency: 3.814464449191333e-5
allele num: 104864
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.27-41T>G
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600387
  gene symbol: ARHGEF1
  hgvsc: ENST00000600387.1:n.118-41T>G
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.-19-41T>G
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000596957
  gene symbol: ARHGEF1
  hgvsc: ENST00000596957.1:n.67-4002T>G
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.-19-41T>G
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.108-41T>G
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.27-41T>G
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.-19-41T>G
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8615
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7229
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18558
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15620
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4953
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1690
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17068
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1020
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6513
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6266
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3888
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
reference allele: T
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum

19-42392100-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42392100
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42392100
    reference: chr 19
allele count: 1
allele frequency: 9.45769572701307e-6
allele num: 105734
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.-19-35C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.27-35C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.108-35C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.-19-35C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000596957
  gene symbol: ARHGEF1
  hgvsc: ENST00000596957.1:n.67-3996C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.-19-35C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600387
  gene symbol: ARHGEF1
  hgvsc: ENST00000600387.1:n.118-35C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.27-35C>T
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5358
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1939
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5938
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6983
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13008
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23594
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 323
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1398
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1851
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5586
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4708
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1303
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21940
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP

19-42392118-CCCT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42392118
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42392115
    reference: chr 19
allele count: 3
allele frequency: 2.705676509316546e-5
allele num: 110878
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.27-12_27-10delCTC
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600387
  gene symbol: ARHGEF1
  hgvsc: ENST00000600387.1:n.118-12_118-10delCTC
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.108-12_108-10delCTC
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.27-12_27-10delCTC
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.-19-12_-19-10delCTC
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.-19-12_-19-10delCTC
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.-19-12_-19-10delCTC
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000596957
  gene symbol: ARHGEF1
  hgvsc: ENST00000596957.1:n.67-3973_67-3971delCTC
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5268
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33247
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3098
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8857
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4957
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1628
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 549
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 628
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1496
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 910
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1856
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5342
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: CCCT
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

19-42392120-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42392120
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42392120
    reference: chr 19
allele count: 1
allele frequency: 8.969253399347038e-6
allele num: 111492
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.27-15C>G
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.27-15C>G
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600387
  gene symbol: ARHGEF1
  hgvsc: ENST00000600387.1:n.118-15C>G
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.108-15C>G
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.-19-15C>G
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.-19-15C>G
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.-19-15C>G
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000596957
  gene symbol: ARHGEF1
  hgvsc: ENST00000596957.1:n.67-3976C>G
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4811
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4692
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3246
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9279
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33552
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1471
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5052
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 907
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5529
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32566
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 570
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1887
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 481
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Other
population: Latino
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: BaseQRankSum

19-42392122-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42392122
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42392122
    reference: chr 19
allele count: 4
allele frequency: 3.563220438632436e-5
allele num: 112258
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.108-13C>G
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000596957
  gene symbol: ARHGEF1
  hgvsc: ENST00000596957.1:n.67-3974C>G
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.27-13C>G
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.-19-13C>G
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.-19-13C>G
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600387
  gene symbol: ARHGEF1
  hgvsc: ENST00000600387.1:n.118-13C>G
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.27-13C>G
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.-19-13C>G
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4161
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4334
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3362
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34226
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9694
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34116
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1826
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1358
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1933
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1168
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQ

19-42392130-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42392130
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42392130
    reference: chr 19
allele count: 11837
allele frequency: 1.020571803007311e-1
allele num: 115984
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.-19-5T>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600387
  gene symbol: ARHGEF1
  hgvsc: ENST00000600387.1:n.118-5T>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.-19-5T>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.27-5T>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.108-5T>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.27-5T>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000596957
  gene symbol: ARHGEF1
  hgvsc: ENST00000596957.1:n.67-3966T>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.-19-5T>C
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 4.75e1
  variant carriers: 574
genotype depth: GenotypeDepth
  all individuals: 4875
  bin: 3.25e1
  variant carriers: 1487
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.75e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 1252
  bin: 1.75e1
  variant carriers: 684
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.25e1
  variant carriers: 67
genotype depth: GenotypeDepth
  all individuals: 2025
  bin: 1.25e1
  variant carriers: 281
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 5.25e1
  variant carriers: 296
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 6.25e1
  variant carriers: 159
genotype depth: GenotypeDepth
  all individuals: 2475
  bin: 7.5e0
  variant carriers: 80
genotype depth: GenotypeDepth
  all individuals: 1105
  bin: 4.25e1
  variant carriers: 791
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 32578
  bin: 2.25e1
  variant carriers: 1153
genotype depth: GenotypeDepth
  all individuals: 10779
  bin: 2.75e1
  variant carriers: 1395
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.75e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 1803
  bin: 3.75e1
  variant carriers: 1107
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.75e1
  variant carriers: 94
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 72
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 9.75e1
  variant carriers: 419
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 5.75e1
  variant carriers: 227
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 56
genotype quality: GenotypeQuality
  all individuals: 5437
  bin: 6.75e1
  variant carriers: 147
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 1.75e1
  variant carriers: 29
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 7.5e0
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 4.75e1
  variant carriers: 109
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 5.25e1
  variant carriers: 125
genotype quality: GenotypeQuality
  all individuals: 32588
  bin: 6.25e1
  variant carriers: 171
hgvs: c.27-5T>C
num of homozygotes: 2897
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: QD

19-42392136-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42392136
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42392136
    reference: chr 19
allele count: 1
allele frequency: 8.509769215058888e-6
allele num: 117512
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.28C>T
  hgvsp: ENSP00000337261.3:p.Pro10Ser
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600387
  gene symbol: ARHGEF1
  hgvsc: ENST00000600387.1:n.119C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.-18C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.109C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.-18C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000596957
  gene symbol: ARHGEF1
  hgvsc: ENST00000596957.1:n.67-3960C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.28C>T
  hgvsp: ENSP00000367394.3:p.Pro10Ser
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.-18C>T
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1406
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1875
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5186
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1860
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32953
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11651
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 506
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6408
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1928
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1030
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Pro10Ser
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: Latino
reference allele: C
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum

19-42392137-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42392137
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42392137
    reference: chr 19
allele count: 70
allele frequency: 5.94429347826087e-4
allele num: 117760
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600387
  gene symbol: ARHGEF1
  hgvsc: ENST00000600387.1:n.120C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.-17C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.29C>T
  hgvsp: ENSP00000367394.3:p.Pro10Leu
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.29C>T
  hgvsp: ENSP00000337261.3:p.Pro10Leu
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.-17C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000596957
  gene symbol: ARHGEF1
  hgvsc: ENST00000596957.1:n.67-3959C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.110C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.-17C>T
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 4.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1887
  bin: 3.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33075
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1752
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5264
  bin: 3.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 11725
  bin: 2.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 549
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 463
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1999
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Pro10Leu
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD

19-42392144-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42392144
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42392144
    reference: chr 19
allele count: 4
allele frequency: 3.363266404331887e-5
allele num: 118932
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600387
  gene symbol: ARHGEF1
  hgvsc: ENST00000600387.1:n.127G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.117G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.-10G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000596957
  gene symbol: ARHGEF1
  hgvsc: ENST00000596957.1:n.67-3952G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.36G>A
  hgvsp: ENST00000378152.4:c.36G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.-10G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.36G>A
  hgvsp: ENST00000337665.4:c.36G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.-10G>A
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1183
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12166
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33582
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1944
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5607
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2908
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 899
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2041
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Glu12Glu
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

19-42392147-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42392147
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42392147
    reference: chr 19
allele count: 1
allele frequency: 8.38321345338095e-6
allele num: 119286
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.39C>T
  hgvsp: ENST00000378152.4:c.39C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.-7C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.-7C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000596957
  gene symbol: ARHGEF1
  hgvsc: ENST00000596957.1:n.67-3949C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.39C>T
  hgvsp: ENST00000337665.4:c.39C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.120C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.-7C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600387
  gene symbol: ARHGEF1
  hgvsc: ENST00000600387.1:n.130C>T
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1957
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12332
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33680
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5705
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 916
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Pro13Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: African
reference allele: C
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ

19-42392166-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42392166
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42392166
    reference: chr 19
allele count: 2
allele frequency: 1.663755095249979e-5
allele num: 120210
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600387
  gene symbol: ARHGEF1
  hgvsc: ENST00000600387.1:n.149G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.139G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.58G>A
  hgvsp: ENSP00000367394.3:p.Ala20Thr
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.13G>A
  hgvsp: ENSP00000470715.1:p.Ala5Thr
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.13G>A
  hgvsp: ENSP00000344429.3:p.Ala5Thr
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000596957
  gene symbol: ARHGEF1
  hgvsc: ENST00000596957.1:n.67-3930G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.58G>A
  hgvsp: ENSP00000337261.3:p.Ala20Thr
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.13G>A
  hgvsp: ENSP00000346532.2:p.Ala5Thr
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1999
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12948
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33604
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5995
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 670
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36686
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 942
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6911
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5637
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Ala20Thr
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

19-42392166-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42392166
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42392166
    reference: chr 19
allele count: 1
allele frequency: 8.318775476249896e-6
allele num: 120210
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000596957
  gene symbol: ARHGEF1
  hgvsc: ENST00000596957.1:n.67-3930G>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.58G>C
  hgvsp: ENSP00000337261.3:p.Ala20Pro
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.13G>C
  hgvsp: ENSP00000470715.1:p.Ala5Pro
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.13G>C
  hgvsp: ENSP00000346532.2:p.Ala5Pro
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.58G>C
  hgvsp: ENSP00000367394.3:p.Ala20Pro
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.13G>C
  hgvsp: ENSP00000344429.3:p.Ala5Pro
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.139G>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600387
  gene symbol: ARHGEF1
  hgvsc: ENST00000600387.1:n.149G>C
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5995
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12948
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33604
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1999
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 942
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 670
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ala20Pro
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff

19-42392168-CCGAG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42392168
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42392164
    reference: chr 19
allele count: 1
allele frequency: 8.311999202048076e-6
allele num: 120308
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.142_145delCGAG
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.61_64delCGAG
  hgvsp: ENSP00000367394.3:p.Arg21GlyfsTer46
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.16_19delCGAG
  hgvsp: ENSP00000470715.1:p.Arg6GlyfsTer46
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.61_64delCGAG
  hgvsp: ENSP00000337261.3:p.Arg21GlyfsTer46
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.16_19delCGAG
  hgvsp: ENSP00000344429.3:p.Arg6GlyfsTer46
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.16_19delCGAG
  hgvsp: ENSP00000346532.2:p.Arg6GlyfsTer46
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000596957
  gene symbol: ARHGEF1
  hgvsc: ENST00000596957.1:n.67-3927_67-3924delCGAG
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600387
  gene symbol: ARHGEF1
  hgvsc: ENST00000600387.1:n.152_155delCGAG
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33568
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2006
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6022
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13023
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2120
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6927
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg21GlyfsTer46
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: CCGAG
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

19-42392170-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42392170
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42392170
    reference: chr 19
allele count: 10
allele frequency: 8.30827005200977e-5
allele num: 120362
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.17G>A
  hgvsp: ENSP00000470715.1:p.Arg6Gln
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.62G>A
  hgvsp: ENSP00000337261.3:p.Arg21Gln
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600387
  gene symbol: ARHGEF1
  hgvsc: ENST00000600387.1:n.153G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.143G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.17G>A
  hgvsp: ENSP00000346532.2:p.Arg6Gln
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.17G>A
  hgvsp: ENSP00000344429.3:p.Arg6Gln
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000596957
  gene symbol: ARHGEF1
  hgvsc: ENST00000596957.1:n.67-3926G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.62G>A
  hgvsp: ENSP00000367394.3:p.Arg21Gln
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6056
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2023
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13069
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33510
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2558
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 575
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg21Gln
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

19-42392170-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42392170
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42392170
    reference: chr 19
allele count: 1
allele frequency: 8.30827005200977e-6
allele num: 120362
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600387
  gene symbol: ARHGEF1
  hgvsc: ENST00000600387.1:n.153G>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.17G>C
  hgvsp: ENSP00000346532.2:p.Arg6Pro
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.143G>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.17G>C
  hgvsp: ENSP00000470715.1:p.Arg6Pro
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.17G>C
  hgvsp: ENSP00000344429.3:p.Arg6Pro
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.62G>C
  hgvsp: ENSP00000367394.3:p.Arg21Pro
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.62G>C
  hgvsp: ENSP00000337261.3:p.Arg21Pro
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000596957
  gene symbol: ARHGEF1
  hgvsc: ENST00000596957.1:n.67-3926G>C
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13069
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33510
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6056
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2023
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36739
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3046
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg21Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQ

19-42392173-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42392173
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42392173
    reference: chr 19
allele count: 1
allele frequency: 8.299030673217368e-6
allele num: 120496
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.65G>A
  hgvsp: ENSP00000337261.3:p.Gly22Glu
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.65G>A
  hgvsp: ENSP00000367394.3:p.Gly22Glu
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.20G>A
  hgvsp: ENSP00000470715.1:p.Gly7Glu
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.146G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000596957
  gene symbol: ARHGEF1
  hgvsc: ENST00000596957.1:n.67-3923G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.20G>A
  hgvsp: ENSP00000346532.2:p.Gly7Glu
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.20G>A
  hgvsp: ENSP00000344429.3:p.Gly7Glu
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600387
  gene symbol: ARHGEF1
  hgvsc: ENST00000600387.1:n.156G>A
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2031
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33550
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6075
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13132
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 522
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gly22Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

19-42392173-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42392173
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42392173
    reference: chr 19
allele count: 1
allele frequency: 8.299030673217368e-6
allele num: 120496
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.65G>T
  hgvsp: ENSP00000337261.3:p.Gly22Val
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000596957
  gene symbol: ARHGEF1
  hgvsc: ENST00000596957.1:n.67-3923G>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.20G>T
  hgvsp: ENSP00000470715.1:p.Gly7Val
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600387
  gene symbol: ARHGEF1
  hgvsc: ENST00000600387.1:n.156G>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.146G>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.65G>T
  hgvsp: ENSP00000367394.3:p.Gly22Val
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.20G>T
  hgvsp: ENSP00000344429.3:p.Gly7Val
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.20G>T
  hgvsp: ENSP00000346532.2:p.Gly7Val
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13132
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6075
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33550
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2031
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5653
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 946
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37013
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 522
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gly22Val
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ClippingRankSum

19-42392176-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42392176
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42392176
    reference: chr 19
allele count: 5
allele frequency: 4.147174944427856e-5
allele num: 120564
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.23C>T
  hgvsp: ENSP00000346532.2:p.Ala8Val
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000596957
  gene symbol: ARHGEF1
  hgvsc: ENST00000596957.1:n.67-3920C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.23C>T
  hgvsp: ENSP00000344429.3:p.Ala8Val
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.149C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.68C>T
  hgvsp: ENSP00000367394.3:p.Ala23Val
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.23C>T
  hgvsp: ENSP00000470715.1:p.Ala8Val
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.68C>T
  hgvsp: ENSP00000337261.3:p.Ala23Val
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600387
  gene symbol: ARHGEF1
  hgvsc: ENST00000600387.1:n.159C>T
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6081
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13185
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2036
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33532
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1116
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 480
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2577
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6977
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala23Val
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum

19-42392177-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42392177
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42392177
    reference: chr 19
allele count: 2
allele frequency: 1.658209796703479e-5
allele num: 120612
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000596957
  gene symbol: ARHGEF1
  hgvsc: ENST00000596957.1:n.67-3919G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.69G>A
  hgvsp: ENST00000378152.4:c.69G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.69G>A
  hgvsp: ENST00000337665.4:c.69G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600387
  gene symbol: ARHGEF1
  hgvsc: ENST00000600387.1:n.160G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.24G>A
  hgvsp: ENST00000347545.4:c.24G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.24G>A
  hgvsp: ENST00000354532.3:c.24G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.150G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.24G>A
  hgvsp: ENST00000599846.1:c.24G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6104
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33528
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2032
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13216
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2580
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 951
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
hgvs: c.69G>A
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: QD

19-42392189-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42392189
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42392189
    reference: chr 19
allele count: 1
allele frequency: 8.277186418792524e-6
allele num: 120814
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.24+12G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.69+12G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.69+12G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.24+12G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600387
  gene symbol: ARHGEF1
  hgvsc: ENST00000600387.1:n.160+12G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.24+12G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000596957
  gene symbol: ARHGEF1
  hgvsc: ENST00000596957.1:n.67-3907G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.150+12G>A
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33490
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2056
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6148
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13333
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5657
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2586
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3079
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

19-42392189-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42392189
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42392189
    reference: chr 19
allele count: 1
allele frequency: 8.277186418792524e-6
allele num: 120814
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.24+12G>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600387
  gene symbol: ARHGEF1
  hgvsc: ENST00000600387.1:n.160+12G>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.24+12G>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.69+12G>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000596957
  gene symbol: ARHGEF1
  hgvsc: ENST00000596957.1:n.67-3907G>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.69+12G>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.150+12G>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.24+12G>C
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2056
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33490
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6148
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13333
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3079
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff

19-42392195-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42392195
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42392195
    reference: chr 19
allele count: 1
allele frequency: 8.270888127967181e-6
allele num: 120906
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600387
  gene symbol: ARHGEF1
  hgvsc: ENST00000600387.1:n.160+18G>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.69+18G>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000596957
  gene symbol: ARHGEF1
  hgvsc: ENST00000596957.1:n.67-3901G>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.150+18G>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.24+18G>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.24+18G>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.69+18G>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.24+18G>T
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33447
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6161
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2054
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13364
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1124
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2593
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 953
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: African
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: QD

19-42392196-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42392196
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42392196
    reference: chr 19
allele count: 1
allele frequency: 8.27034090345204e-6
allele num: 120914
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.24+19G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600387
  gene symbol: ARHGEF1
  hgvsc: ENST00000600387.1:n.160+19G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.69+19G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.24+19G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000596957
  gene symbol: ARHGEF1
  hgvsc: ENST00000596957.1:n.67-3900G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.150+19G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.69+19G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.24+19G>A
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13364
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2051
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33448
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6170
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7046
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP

19-42392200-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42392200
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42392200
    reference: chr 19
allele count: 1
allele frequency: 8.267469162340024e-6
allele num: 120956
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.69+23G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.150+23G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.24+23G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.24+23G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.24+23G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000596957
  gene symbol: ARHGEF1
  hgvsc: ENST00000596957.1:n.67-3896G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.69+23G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600387
  gene symbol: ARHGEF1
  hgvsc: ENST00000600387.1:n.160+23G>A
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2057
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6170
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13410
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33393
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3078
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1124
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 952
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37185
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2155
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum

19-42392202-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42392202
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42392202
    reference: chr 19
allele count: 1
allele frequency: 8.267469162340024e-6
allele num: 120956
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000596957
  gene symbol: ARHGEF1
  hgvsc: ENST00000596957.1:n.67-3894G>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.24+25G>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.69+25G>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600387
  gene symbol: ARHGEF1
  hgvsc: ENST00000600387.1:n.160+25G>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.24+25G>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.69+25G>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.24+25G>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.150+25G>C
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33325
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6174
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13422
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2058
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 323
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3079
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2156
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: QD

19-42392203-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42392203
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42392203
    reference: chr 19
allele count: 7
allele frequency: 5.786941353482912e-5
allele num: 120962
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600387
  gene symbol: ARHGEF1
  hgvsc: ENST00000600387.1:n.160+26G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.69+26G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.24+26G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.150+26G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.24+26G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.24+26G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.69+26G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000596957
  gene symbol: ARHGEF1
  hgvsc: ENST00000596957.1:n.67-3893G>A
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 13426
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33330
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2056
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6170
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3081
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum

19-42392204-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42392204
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42392204
    reference: chr 19
allele count: 1438
allele frequency: 1.188744130679188e-2
allele num: 120968
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.24+27C>G
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.69+27C>G
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.24+27C>G
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000596957
  gene symbol: ARHGEF1
  hgvsc: ENST00000596957.1:n.67-3892C>G
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.69+27C>G
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.150+27C>G
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.24+27C>G
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600387
  gene symbol: ARHGEF1
  hgvsc: ENST00000600387.1:n.160+27C>G
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1970
  bin: 3.75e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 1.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 6.25e1
  variant carriers: 92
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.25e1
  variant carriers: 84
genotype depth: GenotypeDepth
  all individuals: 33032
  bin: 2.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 1.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6042
  bin: 3.25e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 7.75e1
  variant carriers: 80
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.25e1
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.75e1
  variant carriers: 100
genotype depth: GenotypeDepth
  all individuals: 13203
  bin: 2.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 5.25e1
  variant carriers: 83
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 4.75e1
  variant carriers: 82
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 5.75e1
  variant carriers: 111
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 4.25e1
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.25e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.75e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 9.75e1
  variant carriers: 313
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 4.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2958
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 6901
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2056
  bin: 8.25e1
  variant carriers: 4
num of homozygotes: 72
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum

19-42392204-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42392204
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42392204
    reference: chr 19
allele count: 3
allele frequency: 2.47999470934462e-5
allele num: 120968
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.24+27C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000596957
  gene symbol: ARHGEF1
  hgvsc: ENST00000596957.1:n.67-3892C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600387
  gene symbol: ARHGEF1
  hgvsc: ENST00000600387.1:n.160+27C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.24+27C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.150+27C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.69+27C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.24+27C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.69+27C>T
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6042
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13203
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1970
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33032
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 896
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6901
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36769
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

19-42392205-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42392205
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42392205
    reference: chr 19
allele count: 14
allele frequency: 1.157120423175469e-4
allele num: 120990
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600387
  gene symbol: ARHGEF1
  hgvsc: ENST00000600387.1:n.160+28G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.24+28G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.24+28G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000596957
  gene symbol: ARHGEF1
  hgvsc: ENST00000596957.1:n.67-3891G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.24+28G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.69+28G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.150+28G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.69+28G>A
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2022
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6136
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33063
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13358
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3023
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 923
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

19-42392223-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42392223
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42392223
    reference: chr 19
allele count: 6
allele frequency: 4.956220056170494e-5
allele num: 121060
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.25-40G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.151-40G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.70-40G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000596957
  gene symbol: ARHGEF1
  hgvsc: ENST00000596957.1:n.67-3873G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.70-40G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.25-40G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600387
  gene symbol: ARHGEF1
  hgvsc: ENST00000600387.1:n.161-40G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.25-40G>A
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2031
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13367
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6127
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33004
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3028
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2553
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ

19-42392248-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42392248
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42392248
    reference: chr 19
allele count: 4
allele frequency: 3.3000033000033e-5
allele num: 121212
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.25-15C>G
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.70-15C>G
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.25-15C>G
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.25-15C>G
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000596957
  gene symbol: ARHGEF1
  hgvsc: ENST00000596957.1:n.67-3848C>G
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600387
  gene symbol: ARHGEF1
  hgvsc: ENST00000600387.1:n.161-15C>G
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.151-15C>G
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.70-15C>G
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6190
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13646
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32991
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2040
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5975
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1102
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2112
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: C
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

19-42392249-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42392249
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42392249
    reference: chr 19
allele count: 1
allele frequency: 8.249599894405122e-6
allele num: 121218
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.70-14C>G
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.151-14C>G
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.25-14C>G
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.70-14C>G
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600387
  gene symbol: ARHGEF1
  hgvsc: ENST00000600387.1:n.161-14C>G
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.25-14C>G
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.25-14C>G
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000596957
  gene symbol: ARHGEF1
  hgvsc: ENST00000596957.1:n.67-3847C>G
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6199
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2044
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13658
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32985
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37319
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1102
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: Other
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQ

19-42392253-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42392253
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42392253
    reference: chr 19
allele count: 51
allele frequency: 4.206393718452047e-4
allele num: 121244
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600387
  gene symbol: ARHGEF1
  hgvsc: ENST00000600387.1:n.161-10C>G
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.25-10C>G
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.151-10C>G
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.70-10C>G
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.25-10C>G
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.25-10C>G
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.70-10C>G
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000596957
  gene symbol: ARHGEF1
  hgvsc: ENST00000596957.1:n.67-3843C>G
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2044
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6204
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13691
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32950
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 9.75e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2580
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37363
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6016
  bin: 9.75e1
  variant carriers: 51
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: QD

19-42392264-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42392264
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42392264
    reference: chr 19
allele count: 1
allele frequency: 8.24551856066228e-6
allele num: 121278
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.26C>G
  hgvsp: ENSP00000470715.1:p.Ala9Gly
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.26C>G
  hgvsp: ENSP00000344429.3:p.Ala9Gly
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.26C>G
  hgvsp: ENSP00000346532.2:p.Ala9Gly
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000596957
  gene symbol: ARHGEF1
  hgvsc: ENST00000596957.1:n.67-3832C>G
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.152C>G
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600387
  gene symbol: ARHGEF1
  hgvsc: ENST00000600387.1:n.162C>G
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.71C>G
  hgvsp: ENSP00000337261.3:p.Ala24Gly
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.71C>G
  hgvsp: ENSP00000367394.3:p.Ala24Gly
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32933
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13815
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2055
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6224
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2110
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7101
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ala24Gly
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: DP

19-42392271-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42392271
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42392271
    reference: chr 19
allele count: 1
allele frequency: 8.244974687927709e-6
allele num: 121286
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.78A>G
  hgvsp: ENST00000378152.4:c.78A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.33A>G
  hgvsp: ENST00000354532.3:c.33A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.159A>G
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000596957
  gene symbol: ARHGEF1
  hgvsc: ENST00000596957.1:n.67-3825A>G
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.33A>G
  hgvsp: ENST00000347545.4:c.33A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.33A>G
  hgvsp: ENST00000599846.1:c.33A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600387
  gene symbol: ARHGEF1
  hgvsc: ENST00000600387.1:n.169A>G
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.78A>G
  hgvsp: ENST00000337665.4:c.78A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2051
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6231
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13874
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32962
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 923
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3062
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7117
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Pro26Pro
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD

19-42392282-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42392282
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42392282
    reference: chr 19
allele count: 2
allele frequency: 1.648288252649623e-5
allele num: 121338
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.89G>A
  hgvsp: ENSP00000337261.3:p.Arg30Gln
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.44G>A
  hgvsp: ENSP00000344429.3:p.Arg15Gln
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600387
  gene symbol: ARHGEF1
  hgvsc: ENST00000600387.1:n.180G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000596957
  gene symbol: ARHGEF1
  hgvsc: ENST00000596957.1:n.67-3814G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.44G>A
  hgvsp: ENSP00000470715.1:p.Arg15Gln
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.89G>A
  hgvsp: ENSP00000367394.3:p.Arg30Gln
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.44G>A
  hgvsp: ENSP00000346532.2:p.Arg15Gln
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.170G>A
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13888
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32975
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6242
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2058
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 925
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg30Gln
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

19-42392285-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42392285
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42392285
    reference: chr 19
allele count: 1
allele frequency: 8.241033755274261e-6
allele num: 121344
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.47C>T
  hgvsp: ENSP00000470715.1:p.Pro16Leu
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600387
  gene symbol: ARHGEF1
  hgvsc: ENST00000600387.1:n.183C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.173C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.47C>T
  hgvsp: ENSP00000344429.3:p.Pro16Leu
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.92C>T
  hgvsp: ENSP00000337261.3:p.Pro31Leu
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.92C>T
  hgvsp: ENSP00000367394.3:p.Pro31Leu
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.47C>T
  hgvsp: ENSP00000346532.2:p.Pro16Leu
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000596957
  gene symbol: ARHGEF1
  hgvsc: ENST00000596957.1:n.67-3811C>T
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6240
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2058
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13898
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32977
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2581
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6017
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3071
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2128
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro31Leu
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum

19-42392290-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42392290
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42392290
    reference: chr 19
allele count: 4
allele frequency: 3.296576505299247e-5
allele num: 121338
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.52C>T
  hgvsp: ENST00000347545.4:c.52C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600387
  gene symbol: ARHGEF1
  hgvsc: ENST00000600387.1:n.188C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.52C>T
  hgvsp: ENST00000599846.1:c.52C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000596957
  gene symbol: ARHGEF1
  hgvsc: ENST00000596957.1:n.67-3806C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.178C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.97C>T
  hgvsp: ENST00000337665.4:c.97C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.52C>T
  hgvsp: ENST00000354532.3:c.52C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.97C>T
  hgvsp: ENST00000378152.4:c.97C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32970
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2056
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13908
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6247
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2582
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3076
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1102
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37647
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Leu33Leu
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

19-42392293-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42392293
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42392293
    reference: chr 19
allele count: 2
allele frequency: 1.648288252649623e-5
allele num: 121338
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.55G>A
  hgvsp: ENSP00000344429.3:p.Val19Ile
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.181G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.100G>A
  hgvsp: ENSP00000337261.3:p.Val34Ile
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.100G>A
  hgvsp: ENSP00000367394.3:p.Val34Ile
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.55G>A
  hgvsp: ENSP00000346532.2:p.Val19Ile
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600387
  gene symbol: ARHGEF1
  hgvsc: ENST00000600387.1:n.191G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.55G>A
  hgvsp: ENSP00000470715.1:p.Val19Ile
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000596957
  gene symbol: ARHGEF1
  hgvsc: ENST00000596957.1:n.67-3803G>A
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13907
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6247
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1209
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2057
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32969
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37651
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7110
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2131
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Val34Ile
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

19-42392293-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42392293
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42392293
    reference: chr 19
allele count: 5
allele frequency: 4.120720631624058e-5
allele num: 121338
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.100G>C
  hgvsp: ENSP00000367394.3:p.Val34Leu
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.55G>C
  hgvsp: ENSP00000470715.1:p.Val19Leu
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.55G>C
  hgvsp: ENSP00000344429.3:p.Val19Leu
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.100G>C
  hgvsp: ENSP00000337261.3:p.Val34Leu
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.181G>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000596957
  gene symbol: ARHGEF1
  hgvsc: ENST00000596957.1:n.67-3803G>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.55G>C
  hgvsp: ENSP00000346532.2:p.Val19Leu
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600387
  gene symbol: ARHGEF1
  hgvsc: ENST00000600387.1:n.191G>C
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32969
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6247
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13907
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2057
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1209
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2131
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2583
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37651
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Val34Leu
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD

19-42392298-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42392298
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42392298
    reference: chr 19
allele count: 4
allele frequency: 3.296576505299247e-5
allele num: 121338
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600387
  gene symbol: ARHGEF1
  hgvsc: ENST00000600387.1:n.196C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.105C>T
  hgvsp: ENST00000378152.4:c.105C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.186C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.105C>T
  hgvsp: ENST00000337665.4:c.105C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.60C>T
  hgvsp: ENST00000347545.4:c.60C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000596957
  gene symbol: ARHGEF1
  hgvsc: ENST00000596957.1:n.67-3798C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.60C>T
  hgvsp: ENST00000354532.3:c.60C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.60C>T
  hgvsp: ENST00000599846.1:c.60C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1209
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2059
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6251
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32970
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13901
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37650
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6024
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2584
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Pro35Pro
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

19-42392299-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42392299
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42392299
    reference: chr 19
allele count: 6
allele frequency: 4.94486475794887e-5
allele num: 121338
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.61G>A
  hgvsp: ENSP00000470715.1:p.Val21Ile
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.106G>A
  hgvsp: ENSP00000337261.3:p.Val36Ile
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.106G>A
  hgvsp: ENSP00000367394.3:p.Val36Ile
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.61G>A
  hgvsp: ENSP00000344429.3:p.Val21Ile
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.61G>A
  hgvsp: ENSP00000346532.2:p.Val21Ile
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000596957
  gene symbol: ARHGEF1
  hgvsc: ENST00000596957.1:n.67-3797G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600387
  gene symbol: ARHGEF1
  hgvsc: ENST00000600387.1:n.197G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.187G>A
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13906
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2059
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6253
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32963
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2583
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3074
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6028
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 37646
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Val36Ile
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff

19-42392303-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42392303
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42392303
    reference: chr 19
allele count: 1
allele frequency: 8.241441263248117e-6
allele num: 121338
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.110G>C
  hgvsp: ENSP00000367394.3:p.Ser37Thr
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.110G>C
  hgvsp: ENSP00000337261.3:p.Ser37Thr
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.191G>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000596957
  gene symbol: ARHGEF1
  hgvsc: ENST00000596957.1:n.67-3793G>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.65G>C
  hgvsp: ENSP00000344429.3:p.Ser22Thr
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.65G>C
  hgvsp: ENSP00000470715.1:p.Ser22Thr
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.65G>C
  hgvsp: ENSP00000346532.2:p.Ser22Thr
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600387
  gene symbol: ARHGEF1
  hgvsc: ENST00000600387.1:n.201G>C
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6250
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13907
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2064
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32955
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37630
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3076
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ser37Thr
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

19-42392309-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42392309
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42392309
    reference: chr 19
allele count: 1
allele frequency: 8.241848811525402e-6
allele num: 121332
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.116T>C
  hgvsp: ENSP00000367394.3:p.Ile39Thr
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.71T>C
  hgvsp: ENSP00000470715.1:p.Ile24Thr
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.197T>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.116T>C
  hgvsp: ENSP00000337261.3:p.Ile39Thr
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000596957
  gene symbol: ARHGEF1
  hgvsc: ENST00000596957.1:n.67-3787T>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.71T>C
  hgvsp: ENSP00000344429.3:p.Ile24Thr
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600387
  gene symbol: ARHGEF1
  hgvsc: ENST00000600387.1:n.207T>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.71T>C
  hgvsp: ENSP00000346532.2:p.Ile24Thr
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32950
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6246
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1209
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2063
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13905
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37619
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1103
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7107
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ile39Thr
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

19-42392310-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42392310
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42392310
    reference: chr 19
allele count: 11143
allele frequency: 9.184951944476499e-2
allele num: 121318
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.72C>T
  hgvsp: ENST00000599846.1:c.72C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.198C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.72C>T
  hgvsp: ENST00000354532.3:c.72C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.72C>T
  hgvsp: ENST00000347545.4:c.72C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.117C>T
  hgvsp: ENST00000337665.4:c.117C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.117C>T
  hgvsp: ENST00000378152.4:c.117C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000596957
  gene symbol: ARHGEF1
  hgvsc: ENST00000596957.1:n.67-3786C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600387
  gene symbol: ARHGEF1
  hgvsc: ENST00000600387.1:n.208C>T
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 3.75e1
  variant carriers: 108
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 5.75e1
  variant carriers: 142
genotype depth: GenotypeDepth
  all individuals: 12292
  bin: 2.75e1
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.75e1
  variant carriers: 162
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 7.25e1
  variant carriers: 162
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 4.25e1
  variant carriers: 100
genotype depth: GenotypeDepth
  all individuals: 4804
  bin: 3.25e1
  variant carriers: 97
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.25e1
  variant carriers: 163
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 4.75e1
  variant carriers: 123
genotype depth: GenotypeDepth
  all individuals: 31322
  bin: 2.25e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 8.75e1
  variant carriers: 154
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 9.25e1
  variant carriers: 190
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 5.25e1
  variant carriers: 145
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.25e1
  variant carriers: 183
genotype depth: GenotypeDepth
  all individuals: 7581
  bin: 9.75e1
  variant carriers: 7008
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.75e1
  variant carriers: 138
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 608
  bin: 9.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1525
  bin: 8.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 6195
  bin: 6.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 2
hgvs: p.Ile39Ile
num of homozygotes: 2146
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: Other
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: DP

19-42392319-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42392319
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42392319
    reference: chr 19
allele count: 1
allele frequency: 8.245382585751979e-6
allele num: 121280
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000596957
  gene symbol: ARHGEF1
  hgvsc: ENST00000596957.1:n.67-3777G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.207G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.126G>A
  hgvsp: ENST00000378152.4:c.126G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600387
  gene symbol: ARHGEF1
  hgvsc: ENST00000600387.1:n.217G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.81G>A
  hgvsp: ENST00000599846.1:c.81G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.81G>A
  hgvsp: ENST00000354532.3:c.81G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.81G>A
  hgvsp: ENST00000347545.4:c.81G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.126G>A
  hgvsp: ENST00000337665.4:c.126G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6893
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14729
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31743
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2151
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2996
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7332
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Glu42Glu
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ

19-42392337-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42392337
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42392337
    reference: chr 19
allele count: 8
allele frequency: 6.604365485585973e-5
allele num: 121132
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.99C>T
  hgvsp: ENST00000354532.3:c.99C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600387
  gene symbol: ARHGEF1
  hgvsc: ENST00000600387.1:n.235C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.144C>T
  hgvsp: ENST00000337665.4:c.144C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000596957
  gene symbol: ARHGEF1
  hgvsc: ENST00000596957.1:n.67-3759C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.99C>T
  hgvsp: ENST00000347545.4:c.99C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.99C>T
  hgvsp: ENST00000599846.1:c.99C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.144C>T
  hgvsp: ENST00000378152.4:c.144C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.225C>T
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31611
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2150
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14677
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6880
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4890
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7319
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asn48Asn
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

19-42392357-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42392357
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42392357
    reference: chr 19
allele count: 1
allele frequency: 8.274994621253496e-6
allele num: 120846
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.156+8G>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.111+8G>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000596957
  gene symbol: ARHGEF1
  hgvsc: ENST00000596957.1:n.67-3739G>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.237+8G>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600387
  gene symbol: ARHGEF1
  hgvsc: ENST00000600387.1:n.247+8G>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.111+8G>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.156+8G>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.111+8G>C
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2138
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14450
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31347
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6819
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2046
  bin: 8.25e1
  variant carriers: 0
hgvs: c.156+8G>C
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/19-42392359-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42392359
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42392359
    reference: chr 19
allele count: 1
allele frequency: 8.277460475126231e-6
allele num: 120810
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000596957
  gene symbol: ARHGEF1
  hgvsc: ENST00000596957.1:n.67-3737A>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.237+10A>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600387
  gene symbol: ARHGEF1
  hgvsc: ENST00000600387.1:n.247+10A>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.156+10A>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.156+10A>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.111+10A>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.111+10A>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.111+10A>C
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6806
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14398
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2137
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31305
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2045
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4880
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7230
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum

19-42392364-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42392364
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42392364
    reference: chr 19
allele count: 1
allele frequency: 8.285004142502071e-6
allele num: 120700
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.111+15G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.156+15G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.156+15G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.111+15G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.111+15G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600387
  gene symbol: ARHGEF1
  hgvsc: ENST00000600387.1:n.247+15G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.237+15G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000596957
  gene symbol: ARHGEF1
  hgvsc: ENST00000596957.1:n.67-3732G>A
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14256
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31151
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6763
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2128
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2503
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7176
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37805
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 973
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

19-42392365-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42392365
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42392365
    reference: chr 19
allele count: 1
allele frequency: 8.286651861182008e-6
allele num: 120676
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.156+16G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.156+16G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.111+16G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.111+16G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600387
  gene symbol: ARHGEF1
  hgvsc: ENST00000600387.1:n.247+16G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.237+16G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.111+16G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000596957
  gene symbol: ARHGEF1
  hgvsc: ENST00000596957.1:n.67-3731G>A
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2128
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14263
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31152
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6758
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4880
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 37853
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 703
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2500
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD

19-42392367-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42392367
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42392367
    reference: chr 19
allele count: 1
allele frequency: 8.288300235387727e-6
allele num: 120652
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.111+18T>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.156+18T>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.111+18T>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.111+18T>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.156+18T>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600387
  gene symbol: ARHGEF1
  hgvsc: ENST00000600387.1:n.247+18T>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.237+18T>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000596957
  gene symbol: ARHGEF1
  hgvsc: ENST00000596957.1:n.67-3729T>C
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6737
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14177
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31058
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2126
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2041
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 772
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4880
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD

19-42392368-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42392368
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42392368
    reference: chr 19
allele count: 1
allele frequency: 8.290224167661493e-6
allele num: 120624
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.237+19G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000596957
  gene symbol: ARHGEF1
  hgvsc: ENST00000596957.1:n.67-3728G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.111+19G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.111+19G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.156+19G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.156+19G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600387
  gene symbol: ARHGEF1
  hgvsc: ENST00000600387.1:n.247+19G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.111+19G>A
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2123
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30994
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14127
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6732
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 973
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 323
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7130
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum

19-42392370-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42392370
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42392370
    reference: chr 19
allele count: 1
allele frequency: 8.292699107705576e-6
allele num: 120588
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.111+21A>G
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600387
  gene symbol: ARHGEF1
  hgvsc: ENST00000600387.1:n.247+21A>G
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.156+21A>G
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.111+21A>G
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.156+21A>G
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.237+21A>G
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.111+21A>G
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000596957
  gene symbol: ARHGEF1
  hgvsc: ENST00000596957.1:n.67-3726A>G
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30873
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2115
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14022
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6698
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2938
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37345
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7098
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2036
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 974
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum

19-42392391-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42392391
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42392391
    reference: chr 19
allele count: 4
allele frequency: 3.335167675554888e-5
allele num: 119934
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.111+42G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.111+42G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.156+42G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.237+42G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.111+42G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.156+42G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600387
  gene symbol: ARHGEF1
  hgvsc: ENST00000600387.1:n.247+42G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000596957
  gene symbol: ARHGEF1
  hgvsc: ENST00000596957.1:n.67-3705G>A
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28577
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4444
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12107
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2021
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1942
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1182
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5936
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 906
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1795
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2893
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6489
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

19-42392391-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42392391
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42392391
    reference: chr 19
allele count: 1
allele frequency: 8.337919188887221e-6
allele num: 119934
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.111+42G>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.111+42G>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600387
  gene symbol: ARHGEF1
  hgvsc: ENST00000600387.1:n.247+42G>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.156+42G>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.237+42G>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.111+42G>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000596957
  gene symbol: ARHGEF1
  hgvsc: ENST00000596957.1:n.67-3705G>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.156+42G>C
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1182
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2021
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4444
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12107
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1942
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28577
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5936
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4880
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 870
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 975
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31444
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum

19-42392397-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42392397
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42392397
    reference: chr 19
allele count: 41
allele frequency: 3.433490771446756e-4
allele num: 119412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.237+48C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600387
  gene symbol: ARHGEF1
  hgvsc: ENST00000600387.1:n.247+48C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.111+48C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.156+48C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000596957
  gene symbol: ARHGEF1
  hgvsc: ENST00000596957.1:n.67-3699C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.156+48C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.111+48C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.111+48C>T
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5671
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29011
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1925
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4430
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 11835
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2017
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 953
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4916
  bin: 9.75e1
  variant carriers: 40
genotype quality: GenotypeQuality
  all individuals: 806
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2364
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26077
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2283
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1450
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2893
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

19-42392398-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42392398
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42392398
    reference: chr 19
allele count: 10
allele frequency: 8.381808123648434e-5
allele num: 119306
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.111+49G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000596957
  gene symbol: ARHGEF1
  hgvsc: ENST00000596957.1:n.67-3698G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.156+49G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.237+49G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.111+49G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.111+49G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600387
  gene symbol: ARHGEF1
  hgvsc: ENST00000600387.1:n.247+49G>A
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.156+49G>A
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12062
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4424
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28736
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1943
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2047
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5649
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2479
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1783
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 945
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 975
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4912
  bin: 9.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 1283
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1487
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: South Asian
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

19-42392401-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42392401
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42392401
    reference: chr 19
allele count: 1
allele frequency: 8.371423309391063e-6
allele num: 119454
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.111+52C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000596957
  gene symbol: ARHGEF1
  hgvsc: ENST00000596957.1:n.67-3695C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.156+52C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.156+52C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.111+52C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600387
  gene symbol: ARHGEF1
  hgvsc: ENST00000600387.1:n.247+52C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.237+52C>T
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.111+52C>T
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27973
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1955
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12689
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4400
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5794
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2053
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1447
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2412
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2925
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 825
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1213
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 934
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: QD

19-42392772-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42392772
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 42392772
    reference: chr 19
allele count: 5
allele frequency: 4.201963157187038e-5
allele num: 118992
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600387
  gene symbol: ARHGEF1
  hgvsc: ENST00000600387.1:n.248-51T>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000470715
  ensembl transcript: ENST00000599846
  gene symbol: ARHGEF1
  hgvsc: ENST00000599846.1:c.112-51T>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000596957
  gene symbol: ARHGEF1
  hgvsc: ENST00000596957.1:n.67-3324T>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000337261
  ensembl transcript: ENST00000337665
  gene symbol: ARHGEF1
  hgvsc: ENST00000337665.4:c.157-51T>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000367394
  ensembl transcript: ENST00000378152
  gene symbol: ARHGEF1
  hgvsc: ENST00000378152.4:c.157-51T>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000346532
  ensembl transcript: ENST00000354532
  gene symbol: ARHGEF1
  hgvsc: ENST00000354532.3:c.112-51T>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl transcript: ENST00000600274
  gene symbol: ARHGEF1
  hgvsc: ENST00000600274.1:n.238-51T>C
  variant of: http://identifiers.org/hgnc/681
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076928
  ensembl protein: ENSP00000344429
  ensembl transcript: ENST00000347545
  gene symbol: ARHGEF1
  hgvsc: ENST00000347545.4:c.112-51T>C
  variant of: http://identifiers.org/hgnc/681
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5218
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2128
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9855
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.75e1
  variant carriers: 0
num of homozygotes: 0
reference allele: T

GenotypeQuality
all individuals: 467
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 910
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 425
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 518
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29143
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1700
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2423
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 291
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6530
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2124
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.239915762190183e-5
allele num: 61730
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9280
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5236
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15452
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10748
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.627653e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.03e-1

FS
type: SiteQuality
SIO_000300: 9.85e-1

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 6.13e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.58e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 6529
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5254
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9274
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.305788200260562e-5
allele num: 10746
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8052
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61764
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 766
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.66e-1

DP
type: SiteQuality
SIO_000300: 1.626018e6

MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
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SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e-1

FS
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.83e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5200
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.621113380669844e-5
allele num: 61686
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10686
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9300
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8028
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 766
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15408
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.544e0

QD
type: SiteQuality
SIO_000300: 2.582e1

FS
type: SiteQuality
SIO_000300: 2.418e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

DP
type: SiteQuality
SIO_000300: 1.597165e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e0

MQ
type: SiteQuality
SIO_000300: 5.871e1

MQRankSum
type: SiteQuality
SIO_000300: -5.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.37e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.16e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7842
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.652674026574998e-5
allele num: 60508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4932
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9192
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15038
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10294
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 748
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.473338e6

FS
type: SiteQuality
SIO_000300: 9.622e0

MQRankSum
type: SiteQuality
SIO_000300: 1.14e0

VQSLOD
type: SiteQuality
SIO_000300: -1.224e0

QD
type: SiteQuality
SIO_000300: 1.623e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.05e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.14e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.38e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 748
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60336
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10256
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7792
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.672894701721607e-5
allele num: 14986
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9150
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4878
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.41e-1

FS
type: SiteQuality
SIO_000300: 1.972e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.72e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.53e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.25e-1

QD
type: SiteQuality
SIO_000300: 1.229e1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4810
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9086
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10072
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7706
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59816
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.735821096591675e-5
allele num: 14846
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 736
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.468536e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.21e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
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VQSLOD
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MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 5.5e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4806
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10078
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7714
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.670285618840822e-5
allele num: 59870
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
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allele num: 738
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InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-3

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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DP
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9786
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7806
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58008
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 752
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African
type: Population
allele count: 1
allele frequency: 1.187930624851509e-4
allele num: 8418
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South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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VQSLOD
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MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.81e0

FS
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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Latino
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South Asian
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allele count: 1
allele frequency: 7.331378299120235e-5
allele num: 13640
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European (Finnish)
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Other
type: Population
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
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BaseQRankSum
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FS
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
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MQ
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4996
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.188777936281503e-4
allele num: 8412
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Other
type: Population
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Latino
type: Population
allele count: 1
allele frequency: 1.013581998783702e-4
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.717976910390324e-5
allele num: 58208
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7802
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.672150411280846e-4
allele num: 13616
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.508e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.1e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.64e0

DP
type: SiteQuality
SIO_000300: 1.165467e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.32e-1

QD
type: SiteQuality
SIO_000300: 1.219e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.12e-1

GenotypeQuality
all individuals: 4078
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7682
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 242
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 702
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6771
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1109
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 768
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13319
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3452
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4431
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 368
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.275184901810763e-4
allele num: 7842
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 752
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.445305770887166e-5
allele num: 58050
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9828
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.18595825426945e-4
allele num: 8432
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4986
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.8e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.138e-1

FS
type: SiteQuality
SIO_000300: 2.451e0

DP
type: SiteQuality
SIO_000300: 1.179307e6

MQRankSum
type: SiteQuality
SIO_000300: 1.06e0

QD
type: SiteQuality
SIO_000300: 9.01e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.95e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.46e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.29e0

GenotypeQuality
all individuals: 1208
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 454
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 610
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2991
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 3144
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3440
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1155
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2846
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 776
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 383
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7820
bin: 2.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7898
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 768
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5042
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.806425265450586e-5
allele num: 58768
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9982
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13878
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8528
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.7e-1

DP
type: SiteQuality
SIO_000300: 1.207681e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.256e0

QD
type: SiteQuality
SIO_000300: 1.088e1

MQRankSum
type: SiteQuality
SIO_000300: 2.39e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.82e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.67e-1

GenotypeQuality
all individuals: 304
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 878
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3537
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 340
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 476
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1767
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 783
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3862
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7618
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 484
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3002
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 772
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.688789813219847e-5
allele num: 59214
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10094
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5104
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14026
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7936
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

FS
type: SiteQuality
SIO_000300: 6.462e0

MQRankSum
type: SiteQuality
SIO_000300: -2.09e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.76e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.34e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.882e0

QD
type: SiteQuality
SIO_000300: 8.75e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.1e-2

DP
type: SiteQuality
SIO_000300: 1.263048e6

GenotypeQuality
all individuals: 31998
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1257
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2309
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 471
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2027
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3051
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 529
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 648
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1823
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5369
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9022
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.850444624090541e-5
allele num: 61850
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5400
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15028
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 788
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8220
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 3.19e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.44e0

FS
type: SiteQuality
SIO_000300: 9.389999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.777e1

MQRankSum
type: SiteQuality
SIO_000300: -3.64e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.65e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.11e-1

DP
type: SiteQuality
SIO_000300: 1.420811e6

MQ
type: SiteQuality
SIO_000300: 5.81e1

GenotypeQuality
all individuals: 44
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1706
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 486
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1352
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2130
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1313
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 538
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 631
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2097
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3060
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62144
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5450
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9090
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15124
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10630
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.212121212121212e-4
allele num: 8250
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e-1

MQ
type: SiteQuality
SIO_000300: 5.936e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.09e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.47e-1

QD
type: SiteQuality
SIO_000300: 2.278e1

DP
type: SiteQuality
SIO_000300: 1.434886e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.826e0

GenotypeQuality
all individuals: 512
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 497
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1475
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 552
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 567
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 432
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5679
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2172
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3071
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 4716
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9198
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10698
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8274
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5478
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15250
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.39488409272582e-5
allele num: 62550
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

DP
type: SiteQuality
SIO_000300: 1.45174e6

VQSLOD
type: SiteQuality
SIO_000300: 8.0e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.53e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.81e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e0

FS
type: SiteQuality
SIO_000300: 3.791e0

QD
type: SiteQuality
SIO_000300: 1.557e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 790
bin: 3.25e1
variant carriers: 45

GenotypeQuality
all individuals: 278
bin: 4.25e1
variant carriers: 57

GenotypeQuality
all individuals: 44
bin: 1.25e1
variant carriers: 10

GenotypeQuality
all individuals: 319
bin: 5.75e1
variant carriers: 74

GenotypeQuality
all individuals: 9637
bin: 9.75e1
variant carriers: 7417

GenotypeQuality
all individuals: 567
bin: 3.75e1
variant carriers: 73

GenotypeQuality
all individuals: 561
bin: 8.75e1
variant carriers: 111

GenotypeQuality
all individuals: 84
bin: 2.5e0
variant carriers: 7

GenotypeQuality
all individuals: 696
bin: 2.75e1
variant carriers: 31

GenotypeQuality
all individuals: 1880
bin: 7.25e1
variant carriers: 106

GenotypeQuality
all individuals: 2647
bin: 2.25e1
variant carriers: 22

GenotypeQuality
all individuals: 2122
bin: 7.75e1
variant carriers: 161

GenotypeQuality
all individuals: 1419
bin: 8.25e1
variant carriers: 184

GenotypeQuality
all individuals: 650
bin: 9.25e1
variant carriers: 174

East Asian
type: Population
allele count: 1677
allele frequency: 1.974799811587376e-1
allele num: 8492
num of homozygotes: 168

African
type: Population
allele count: 7170
allele frequency: 7.086380707649733e-1
allele num: 10118
num of homozygotes: 2554

Other
type: Population
allele count: 45
allele frequency: 5.344418052256532e-2
allele num: 842
num of homozygotes: 3

European (Non-Finnish)
type: Population
allele count: 497
allele frequency: 7.763199000312402e-3
allele num: 64020
num of homozygotes: 9

Latino
type: Population
allele count: 471
allele frequency: 4.280261723009814e-2
allele num: 11004
num of homozygotes: 13

South Asian
type: Population
allele count: 1973
allele frequency: 1.245895428138419e-1
allele num: 15836
num of homozygotes: 150

European (Finnish)
type: Population
allele count: 4
allele frequency: 7.052186177715092e-4
allele num: 5672
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.49e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.273e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.9e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.91e-1

FS
type: SiteQuality
SIO_000300: 1.273e0

MQ
type: SiteQuality
SIO_000300: 5.985e1

VQSLOD
type: SiteQuality
SIO_000300: 2.414e1

MQRankSum
type: SiteQuality
SIO_000300: 7.7e-2

DP
type: SiteQuality
SIO_000300: 1.627326e6

QD
type: SiteQuality
SIO_000300: 2.011e1

GenotypeQuality
all individuals: 2095
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34792
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2331
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 427
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 852
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2770
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 399
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5563
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 465
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.239081607187422e-5
allele num: 16028
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5798
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64832
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10216
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11202
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.647837e6

VQSLOD
type: SiteQuality
SIO_000300: 7.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 2.334e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.25e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.48e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.2e-1

QD
type: SiteQuality
SIO_000300: 1.528e1

MQRankSum
type: SiteQuality
SIO_000300: 7.16e-1

GenotypeQuality
all individuals: 854
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2331
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35118
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1941
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5620
bin: 9.75e1
variant carriers: 70

GenotypeQuality
all individuals: 296
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2777
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1032
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6418
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11232
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5828
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.17096018735363e-3
allele num: 854
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

South Asian
type: Population
allele count: 69
allele frequency: 4.292646509891751e-3
allele num: 16074
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10224
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64962
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.69e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -2.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.37e-1

DP
type: SiteQuality
SIO_000300: 1.652572e6

FS
type: SiteQuality
SIO_000300: 2.169e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.39e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.545e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 4

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10230
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.519267992257611e-4
allele num: 11366
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6016
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16234
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65606
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -6.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.4e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.06e-1

BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
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SIO_000300: 1.004e1

FS
type: SiteQuality
SIO_000300: 1.518e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

DP
type: SiteQuality
SIO_000300: 1.674279e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65792
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11392
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.144015728680265e-5
allele num: 16276
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6086
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10250
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.899e1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.8e-1

DP
type: SiteQuality
SIO_000300: 1.680709e6

MQRankSum
type: SiteQuality
SIO_000300: -6.28e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 6.78e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.959e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6322
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11488
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.720062208398134e-5
allele num: 10288
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66208
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.100536847242558e-5
allele num: 16392
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.253e1

DP
type: SiteQuality
SIO_000300: 1.69948e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.09e0

FS
type: SiteQuality
SIO_000300: 5.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

MQ
type: SiteQuality
SIO_000300: 5.971e1

MQRankSum
type: SiteQuality
SIO_000300: -6.74e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.77e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.93e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.01e-1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2542
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GenotypeQuality
all individuals: 2111
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16392
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6322
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11488
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.720062208398134e-5
allele num: 10288
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66208
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.44e-1

QD
type: SiteQuality
SIO_000300: 1.253e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.09e0

MQ
type: SiteQuality
SIO_000300: 5.971e1

MQRankSum
type: SiteQuality
SIO_000300: -6.74e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.93e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.77e0

DP
type: SiteQuality
SIO_000300: 1.69948e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.716284492809949e-5
allele num: 10292
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16412
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6348
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66240
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.347e1

BaseQRankSum
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QD
type: SiteQuality
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InbreedingCoeff
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SIO_000300: 4.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -3.1e-2

DP
type: SiteQuality
SIO_000300: 1.701234e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.8e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.73973556019485e-4
allele num: 11496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.136762860727729e-4
allele num: 6376
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.218323586744639e-4
allele num: 16416
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.474635163307853e-4
allele num: 8634
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66266
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.716284492809949e-5
allele num: 10292
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.703437e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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VQSLOD
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MQ
type: SiteQuality
SIO_000300: 5.95e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.9e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509069507741527e-5
allele num: 66266
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10292
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16416
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6376
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.7e-2

DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.318e1

FS
type: SiteQuality
SIO_000300: 1.188e0

VQSLOD
type: SiteQuality
SIO_000300: 2.56e0

MQ
type: SiteQuality
SIO_000300: 5.95e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66326
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10298
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6412
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157407407407407e-4
allele num: 8640
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
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South Asian
type: Population
allele count: 0
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allele num: 16426
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.705333e6

FS
type: SiteQuality
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MQRankSum
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VQSLOD
type: SiteQuality
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InbreedingCoeff
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SIO_000300: 1.1e-3

MQ
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.076e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.38e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 117
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GenotypeQuality
all individuals: 2572
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66326
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6412
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South Asian
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allele count: 1
allele frequency: 6.087909411907951e-5
allele num: 16426
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ReadPosRankSum
type: SiteQuality
SIO_000300: -6.36e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.9e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.7e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

QD
type: SiteQuality
SIO_000300: 1.076e1

FS
type: SiteQuality
SIO_000300: 4.04e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

MQ
type: SiteQuality
SIO_000300: 5.934e1

DP
type: SiteQuality
SIO_000300: 1.705333e6

ClippingRankSum
type: SiteQuality
SIO_000300: 4.38e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10304
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6436
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.314814814814815e-4
allele num: 8640
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16424
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.014136299243452e-5
allele num: 66354
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.680555555555556e-5
allele num: 11520
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.3e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

MQ
type: SiteQuality
SIO_000300: 5.951e1

FS
type: SiteQuality
SIO_000300: 1.94e0

DP
type: SiteQuality
SIO_000300: 1.706832e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.74e-1

BaseQRankSum
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SIO_000300: -1.503e0

QD
type: SiteQuality
SIO_000300: 8.76e0

VQSLOD
type: SiteQuality
SIO_000300: 1.13e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.9e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10304
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16430
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6448
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.013046491307361e-5
allele num: 66378
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.3e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.89e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e0

MQ
type: SiteQuality
SIO_000300: 5.962e1

VQSLOD
type: SiteQuality
SIO_000300: 1.03e-1

FS
type: SiteQuality
SIO_000300: 8.93e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.59e0

DP
type: SiteQuality
SIO_000300: 1.707562e6

QD
type: SiteQuality
SIO_000300: 1.476e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6512
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 1
allele frequency: 6.080505898090721e-5
allele num: 16446
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66466
num of homozygotes: 0

Other
type: Population
allele count: 0
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allele num: 892
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 2.84e-1

FS
type: SiteQuality
SIO_000300: 7.36e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e0

DP
type: SiteQuality
SIO_000300: 1.710914e6

VQSLOD
type: SiteQuality
SIO_000300: 7.4e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -5.76e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.07e0

QD
type: SiteQuality
SIO_000300: 1.004e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16446
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.699321047526673e-5
allele num: 10310
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66466
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e0

QD
type: SiteQuality
SIO_000300: 1.004e1

DP
type: SiteQuality
SIO_000300: 1.710914e6

MQRankSum
type: SiteQuality
SIO_000300: 1.07e0

MQ
type: SiteQuality
SIO_000300: 5.965e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.84e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.76e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.4e-2

FS
type: SiteQuality
SIO_000300: 7.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16446
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6538
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503623733197005e-5
allele num: 66506
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
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Other
type: Population
allele count: 0
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African
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allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.364e0

MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 9.257999999999999e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -4.98e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.48e-1

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.71157e6

QD
type: SiteQuality
SIO_000300: 1.067e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

African
type: Population
allele count: 1
allele frequency: 9.680542110358181e-5
allele num: 10330
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 894
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6540
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66504
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East Asian
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South Asian
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BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
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MQRankSum
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InbreedingCoeff
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VQSLOD
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FS
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.503081316699233e-5
allele num: 66530
num of homozygotes: 0

South Asian
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Latino
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African
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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BaseQRankSum
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MQ
type: SiteQuality
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ClippingRankSum
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DP
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MQRankSum
type: SiteQuality
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
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European (Finnish)
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East Asian
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Latino
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South Asian
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Other
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ReadPosRankSum
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VQSLOD
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MQRankSum
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FS
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ClippingRankSum
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InbreedingCoeff
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQ
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DP
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
type: Population
allele count: 0
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num of homozygotes: 0

African
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allele frequency: 6.775067750677507e-4
allele num: 10332
num of homozygotes: 0

East Asian
type: Population
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European (Finnish)
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16450
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66534
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.49e0

VQSLOD
type: SiteQuality
SIO_000300: 3.31e0

QD
type: SiteQuality
SIO_000300: 1.307e1

DP
type: SiteQuality
SIO_000300: 1.712609e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.935e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.9e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.14e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.0e-3

GenotypeQuality
all individuals: 130
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 5.75e1
variant carriers: 4

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 3

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
all individuals: 126
bin: 5.25e1
variant carriers: 2

GenotypeQuality
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bin: 6.25e1
variant carriers: 1

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6504
bin: 9.75e1
variant carriers: 1346

GenotypeQuality
all individuals: 1060
bin: 9.25e1
variant carriers: 4

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

Latino
type: Population
allele count: 67
allele frequency: 5.803880803880804e-3
allele num: 11544
num of homozygotes: 0

Other
type: Population
allele count: 5
allele frequency: 5.592841163310962e-3
allele num: 894
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 196
allele frequency: 2.945862265909159e-3
allele num: 66534
num of homozygotes: 4

African
type: Population
allele count: 1166
allele frequency: 1.127441500676852e-1
allele num: 10342
num of homozygotes: 67

South Asian
type: Population
allele count: 4
allele frequency: 2.432202359236289e-4
allele num: 16446
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.01e0

DP
type: SiteQuality
SIO_000300: 1.759675e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.04e-1

MQ
type: SiteQuality
SIO_000300: 5.971e1

QD
type: SiteQuality
SIO_000300: 1.387e1

MQRankSum
type: SiteQuality
SIO_000300: 1.88e-1

FS
type: SiteQuality
SIO_000300: 2.025e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.15e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.02e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.34e-1

GenotypeQuality
all individuals: 103
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2510
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variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 1.933861922258751e-4
allele num: 10342
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502990951994469e-5
allele num: 66534
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16446
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.01e0

MQRankSum
type: SiteQuality
SIO_000300: 1.88e-1

FS
type: SiteQuality
SIO_000300: 2.025e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.04e-1

MQ
type: SiteQuality
SIO_000300: 5.971e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.34e-1

QD
type: SiteQuality
SIO_000300: 1.387e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.15e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.02e0

DP
type: SiteQuality
SIO_000300: 1.759675e6

GenotypeQuality
all individuals: 122
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1100
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variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16456
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10342
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 14
allele frequency: 2.104250586184092e-4
allele num: 66532
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.04e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -2.37e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.73881e6

MQ
type: SiteQuality
SIO_000300: 5.958e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.99e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.93e-1

QD
type: SiteQuality
SIO_000300: 1.233e1

GenotypeQuality
all individuals: 1103
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2106
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 77
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GenotypeQuality
all individuals: 5972
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variant carriers: 6

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 924
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variant carriers: 0

GenotypeQuality
all individuals: 36852
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variant carriers: 0

GenotypeQuality
all individuals: 6997
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.010337780983292e-5
allele num: 66552
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16460
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.92975685063682e-4
allele num: 10364
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.39e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -3.4e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.19e-1

QD
type: SiteQuality
SIO_000300: 1.19e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.979e0

VQSLOD
type: SiteQuality
SIO_000300: 3.55e0

DP
type: SiteQuality
SIO_000300: 1.739034e6

MQ
type: SiteQuality
SIO_000300: 5.976e1

GenotypeQuality
all individuals: 2572
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 106
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variant carriers: 0

GenotypeQuality
all individuals: 37289
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variant carriers: 0

GenotypeQuality
all individuals: 7076
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variant carriers: 0

GenotypeQuality
all individuals: 924
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variant carriers: 0

GenotypeQuality
all individuals: 71
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variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
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variant carriers: 0

GenotypeQuality
all individuals: 3039
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16474
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.003482019571351e-5
allele num: 66628
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.53e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

MQRankSum
type: SiteQuality
SIO_000300: 7.8e-1

QD
type: SiteQuality
SIO_000300: 1.182e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.007e0

VQSLOD
type: SiteQuality
SIO_000300: 9.01e-1

DP
type: SiteQuality
SIO_000300: 1.74399e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.3e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.3e-2

GenotypeQuality
all individuals: 923
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 96
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 5
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GenotypeQuality
all individuals: 3
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GenotypeQuality
all individuals: 74
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GenotypeQuality
all individuals: 7077
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3041
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5974
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66628
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16478
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.64902266043937e-5
allele num: 11562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.045e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.33e0

QD
type: SiteQuality
SIO_000300: 1.125e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.439e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.8e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.782e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.346e0

DP
type: SiteQuality
SIO_000300: 1.744044e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 61
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variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 47
allele frequency: 5.432269995376791e-3
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66644
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.426889940541196e-4
allele num: 16482
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.95e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.76e0

DP
type: SiteQuality
SIO_000300: 1.749889e6

MQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.971e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.33e-1

FS
type: SiteQuality
SIO_000300: 5.89e-1

MQ
type: SiteQuality
SIO_000300: 5.969e1

QD
type: SiteQuality
SIO_000300: 1.229e1

GenotypeQuality
all individuals: 24
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 52
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GenotypeQuality
all individuals: 37
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3061
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GenotypeQuality
all individuals: 2581
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.624639076034648e-5
allele num: 10390
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66656
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.243e1

FS
type: SiteQuality
SIO_000300: 2.04e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.86e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.433e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.427e0

VQSLOD
type: SiteQuality
SIO_000300: 1.18e0

MQ
type: SiteQuality
SIO_000300: 5.987e1

MQRankSum
type: SiteQuality
SIO_000300: 5.48e-1

DP
type: SiteQuality
SIO_000300: 1.748233e6

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
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variant carriers: 0

GenotypeQuality
all individuals: 22
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GenotypeQuality
all individuals: 2110
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variant carriers: 0

GenotypeQuality
all individuals: 3
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GenotypeQuality
all individuals: 30
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
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GenotypeQuality
all individuals: 4
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GenotypeQuality
all individuals: 1101
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variant carriers: 0

GenotypeQuality
all individuals: 25
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GenotypeQuality
all individuals: 37590
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2578
bin: 7.25e1
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GenotypeQuality
all individuals: 5995
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06134076857801e-5
allele num: 16498
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10364
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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ReadPosRankSum
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FS
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MQ
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ClippingRankSum
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DP
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
allele num: 908
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European (Non-Finnish)
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allele frequency: 2.99868058054456e-5
allele num: 66696
num of homozygotes: 0

FS
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MQRankSum
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QD
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MQ
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InbreedingCoeff
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VQSLOD
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DP
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ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.499295331194339e-5
allele num: 66698
num of homozygotes: 0

South Asian
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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FS
type: SiteQuality
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ReadPosRankSum
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MQ
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VQSLOD
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DP
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QD
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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Other
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Latino
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allele frequency: 3.456022118541559e-4
allele num: 11574
num of homozygotes: 0

South Asian
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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MQ
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QD
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MQRankSum
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ReadPosRankSum
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FS
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BaseQRankSum
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InbreedingCoeff
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SIO_000300: -1.0e-4

VQSLOD
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 2.999130252226854e-5
allele num: 66686
num of homozygotes: 0

VQSLOD
type: SiteQuality
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MQRankSum
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BaseQRankSum
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MQ
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DP
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FS
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ReadPosRankSum
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ClippingRankSum
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InbreedingCoeff
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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African
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Latino
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allele frequency: 4.320027648176948e-4
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DP
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MQRankSum
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FS
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BaseQRankSum
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ReadPosRankSum
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MQ
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ClippingRankSum
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InbreedingCoeff
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QD
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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East Asian
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European (Non-Finnish)
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African
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European (Finnish)
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South Asian
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QD
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MQRankSum
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FS
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MQ
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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South Asian
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European (Finnish)
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European (Non-Finnish)
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Other
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Latino
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ReadPosRankSum
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VQSLOD
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MQ
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QD
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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DP
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FS
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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Other
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African
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South Asian
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European (Non-Finnish)
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Latino
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MQ
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QD
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BaseQRankSum
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VQSLOD
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MQRankSum
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ReadPosRankSum
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FS
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InbreedingCoeff
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Other
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66684
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.33e0

MQRankSum
type: SiteQuality
SIO_000300: 1.74e0

DP
type: SiteQuality
SIO_000300: 1.75178e6

VQSLOD
type: SiteQuality
SIO_000300: -1.775e-1

FS
type: SiteQuality
SIO_000300: 1.621e0

QD
type: SiteQuality
SIO_000300: 1.559e1

MQ
type: SiteQuality
SIO_000300: 5.961e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.73e0

GenotypeQuality
all individuals: 10
bin: 4.75e1
variant carriers: 5

GenotypeQuality
all individuals: 11509
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variant carriers: 8925

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 5

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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variant carriers: 5

GenotypeQuality
all individuals: 578
bin: 8.75e1
variant carriers: 10

GenotypeQuality
all individuals: 2363
bin: 7.75e1
variant carriers: 8

South Asian
type: Population
allele count: 1994
allele frequency: 1.208191953465826e-1
allele num: 16504
num of homozygotes: 152

European (Non-Finnish)
type: Population
allele count: 448
allele frequency: 6.718051764988154e-3
allele num: 66686
num of homozygotes: 3

African
type: Population
allele count: 5991
allele frequency: 5.759469332820611e-1
allele num: 10402
num of homozygotes: 1751

European (Finnish)
type: Population
allele count: 322
allele frequency: 4.868460840641065e-2
allele num: 6614
num of homozygotes: 9

Latino
type: Population
allele count: 435
allele frequency: 3.759073625993778e-2
allele num: 11572
num of homozygotes: 13

Other
type: Population
allele count: 57
allele frequency: 6.277533039647577e-2
allele num: 908
num of homozygotes: 2

East Asian
type: Population
allele count: 1896
allele frequency: 2.196478220574606e-1
allele num: 8632
num of homozygotes: 216

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.25e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.504e1

MQ
type: SiteQuality
SIO_000300: 5.957e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.12e0

MQRankSum
type: SiteQuality
SIO_000300: 1.45e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.32e-1

FS
type: SiteQuality
SIO_000300: 1.132e0

QD
type: SiteQuality
SIO_000300: 1.731e1

DP
type: SiteQuality
SIO_000300: 2.67591e6

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2539
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variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499880009599232e-5
allele num: 66672
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.06e0

DP
type: SiteQuality
SIO_000300: 1.744772e6

QD
type: SiteQuality
SIO_000300: 1.257e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.62e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.702e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.26e-1

FS
type: SiteQuality
SIO_000300: 2.097e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.12e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 2529
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10352
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.64902266043937e-5
allele num: 11562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.508183920473317e-5
allele num: 66594
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.21256214380987e-4
allele num: 16494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.048e0

MQRankSum
type: SiteQuality
SIO_000300: 8.2e-1

MQ
type: SiteQuality
SIO_000300: 5.98e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.363e1

VQSLOD
type: SiteQuality
SIO_000300: 1.62e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.55e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.28e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.68e-1

DP
type: SiteQuality
SIO_000300: 1.74247e6

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
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variant carriers: 0

GenotypeQuality
all individuals: 75
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2513
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 975
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variant carriers: 0

GenotypeQuality
all individuals: 4879
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variant carriers: 1

GenotypeQuality
all individuals: 2964
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10294
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16444
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504302304591131e-5
allele num: 66476
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.947e0

MQRankSum
type: SiteQuality
SIO_000300: 1.42e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.254e0

FS
type: SiteQuality
SIO_000300: 1.0715e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.0e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.585e0

QD
type: SiteQuality
SIO_000300: 1.148e1

DP
type: SiteQuality
SIO_000300: 1.734223e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
all individuals: 2512
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 143
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 975
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GenotypeQuality
all individuals: 38170
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10288
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16430
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504619180885318e-5
allele num: 66462
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.732678e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.93e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.019e1

MQ
type: SiteQuality
SIO_000300: 5.982e1

MQRankSum
type: SiteQuality
SIO_000300: 7.37e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.55e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.05e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.563e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 5
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
all individuals: 2042
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66406
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10280
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.094588005850804e-5
allele num: 16408
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.397e1

MQ
type: SiteQuality
SIO_000300: 5.977e1

MQRankSum
type: SiteQuality
SIO_000300: 2.95e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.34e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.512e0

FS
type: SiteQuality
SIO_000300: 7.961e0

DP
type: SiteQuality
SIO_000300: 1.728279e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.99e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.04e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506160195198361e-5
allele num: 66394
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10280
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.95e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.009e0

VQSLOD
type: SiteQuality
SIO_000300: -2.406e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.933e0

MQRankSum
type: SiteQuality
SIO_000300: 5.9e-1

DP
type: SiteQuality
SIO_000300: 1.728065e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.63e0

QD
type: SiteQuality
SIO_000300: 1.796e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506795648374167e-5
allele num: 66366
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16404
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.533e-1

MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 2.102e0

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.725595e6

BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.19e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10278
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16398
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507159005275056e-5
allele num: 66350
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -9.48e-2

QD
type: SiteQuality
SIO_000300: 1.371e1

MQ
type: SiteQuality
SIO_000300: 5.958e1

DP
type: SiteQuality
SIO_000300: 1.724212e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.65e-1

FS
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ReadPosRankSum
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.09e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.083e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10274
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16388
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.166044776119403e-4
allele num: 8576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66334
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.74e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.23e0

DP
type: SiteQuality
SIO_000300: 1.720828e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.064e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.439e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -2.35e-1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2014
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8526
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 3.922337713277113e-4
allele num: 10198
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66010
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16246
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

QD
type: SiteQuality
SIO_000300: 1.399e1

MQRankSum
type: SiteQuality
SIO_000300: 6.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.88e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.9e0

FS
type: SiteQuality
SIO_000300: 1.151e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.019e0

DP
type: SiteQuality
SIO_000300: 1.670429e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.78e-1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6489
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10198
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.172882946281961e-4
allele num: 8526
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16246
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66010
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.9e0

FS
type: SiteQuality
SIO_000300: 1.151e0

QD
type: SiteQuality
SIO_000300: 1.399e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 6.36e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

DP
type: SiteQuality
SIO_000300: 1.670429e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.88e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.019e0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 972
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8484
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.722958827634333e-5
allele num: 11464
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 40
allele frequency: 6.081060536957645e-4
allele num: 65778
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10152
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16092
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.64e-1

DP
type: SiteQuality
SIO_000300: 1.666603e6

VQSLOD
type: SiteQuality
SIO_000300: 2.83e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

FS
type: SiteQuality
SIO_000300: 1.716e0

QD
type: SiteQuality
SIO_000300: 1.556e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.02e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.18e-1

GenotypeQuality
all individuals: 2869
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.528117359413203e-4
allele num: 6544
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.127696473666596e-5
allele num: 65734
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.123595505617978e-3
allele num: 890
num of homozygotes: 0

Latino
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allele count: 2
allele frequency: 1.746419839329375e-4
allele num: 11452
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10136
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16084
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8466
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.07e0

DP
type: SiteQuality
SIO_000300: 1.668506e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.59e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 3.9e-1

BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65794
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10148
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16124
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.726003490401397e-5
allele num: 11460
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6554
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8482
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InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.005e0

MQRankSum
type: SiteQuality
SIO_000300: -1.34e0

ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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DP
type: SiteQuality
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QD
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