17-79027484-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79027484
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 79027484
    reference: chr 17
allele count: 1
allele frequency: 8.238861059847087e-6
allele num: 121376
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000576470
  gene symbol: BAIAP2
  hgvsc: ENST00000576470.1:n.178T>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000570913
  gene symbol: BAIAP2
  hgvsc: ENST00000570913.1:n.175T>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000316338
  ensembl transcript: ENST00000321300
  gene symbol: BAIAP2
  hgvsc: ENST00000321300.6:c.71T>A
  hgvsp: ENSP00000316338.6:p.Phe24Tyr
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573017
  gene symbol: BAIAP2
  hgvsc: ENST00000573017.1:n.110T>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460492
  ensembl transcript: ENST00000572329
  gene symbol: BAIAP2
  hgvsc: ENST00000572329.1:c.170T>A
  hgvsp: ENSP00000460492.1:p.Phe57Tyr
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000315685
  ensembl transcript: ENST00000321280
  gene symbol: BAIAP2
  hgvsc: ENST00000321280.7:c.71T>A
  hgvsp: ENSP00000315685.7:p.Phe24Tyr
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458494
  ensembl transcript: ENST00000575989
  gene symbol: BAIAP2
  hgvsc: ENST00000575989.1:c.-152T>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458202
  ensembl transcript: ENST00000571530
  gene symbol: BAIAP2
  hgvsc: ENST00000571530.1:c.11T>A
  hgvsp: ENSP00000458202.1:p.Phe4Tyr
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460131
  ensembl transcript: ENST00000572918
  gene symbol: BAIAP2
  hgvsc: ENST00000572918.1:c.11T>A
  hgvsp: ENSP00000460131.1:p.Phe4Tyr
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000401022
  ensembl transcript: ENST00000428708
  gene symbol: BAIAP2
  hgvsc: ENST00000428708.2:c.71T>A
  hgvsp: ENSP00000401022.2:p.Phe24Tyr
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573894
  gene symbol: BAIAP2
  hgvsc: ENST00000573894.1:n.150T>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000376211
  ensembl transcript: ENST00000392411
  gene symbol: BAIAP2
  hgvsc: ENST00000392411.3:c.-18+18376T>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000413069
  ensembl transcript: ENST00000435091
  gene symbol: BAIAP2
  hgvsc: ENST00000435091.3:c.71T>A
  hgvsp: ENSP00000413069.3:p.Phe24Tyr
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458964
  ensembl transcript: ENST00000575712
  gene symbol: BAIAP2
  hgvsc: ENST00000575712.1:c.71T>A
  hgvsp: ENSP00000458964.1:p.Phe24Tyr
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461144
  ensembl transcript: ENST00000575245
  gene symbol: BAIAP2
  hgvsc: ENST00000575245.1:c.170T>A
  hgvsp: ENSP00000461144.1:p.Phe57Tyr
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460344
  ensembl transcript: ENST00000575750
  gene symbol: BAIAP2
  hgvsc: ENST00000575750.1:c.71T>A
  hgvsp: ENSP00000460344.1:p.Phe24Tyr
  variant of: http://identifiers.org/hgnc/947
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3737
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1159
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6052
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2632
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5328
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Phe24Tyr
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: T
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff

17-79027488-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79027488
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 79027488
    reference: chr 17
allele count: 1
allele frequency: 8.238996819747227e-6
allele num: 121374
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573894
  gene symbol: BAIAP2
  hgvsc: ENST00000573894.1:n.154C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000570913
  gene symbol: BAIAP2
  hgvsc: ENST00000570913.1:n.179C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000316338
  ensembl transcript: ENST00000321300
  gene symbol: BAIAP2
  hgvsc: ENST00000321300.6:c.75C>T
  hgvsp: ENST00000321300.6:c.75C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458202
  ensembl transcript: ENST00000571530
  gene symbol: BAIAP2
  hgvsc: ENST00000571530.1:c.15C>T
  hgvsp: ENST00000571530.1:c.15C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460344
  ensembl transcript: ENST00000575750
  gene symbol: BAIAP2
  hgvsc: ENST00000575750.1:c.75C>T
  hgvsp: ENST00000575750.1:c.75C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460131
  ensembl transcript: ENST00000572918
  gene symbol: BAIAP2
  hgvsc: ENST00000572918.1:c.15C>T
  hgvsp: ENST00000572918.1:c.15C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000413069
  ensembl transcript: ENST00000435091
  gene symbol: BAIAP2
  hgvsc: ENST00000435091.3:c.75C>T
  hgvsp: ENST00000435091.3:c.75C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573017
  gene symbol: BAIAP2
  hgvsc: ENST00000573017.1:n.114C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461144
  ensembl transcript: ENST00000575245
  gene symbol: BAIAP2
  hgvsc: ENST00000575245.1:c.174C>T
  hgvsp: ENST00000575245.1:c.174C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000576470
  gene symbol: BAIAP2
  hgvsc: ENST00000576470.1:n.182C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000401022
  ensembl transcript: ENST00000428708
  gene symbol: BAIAP2
  hgvsc: ENST00000428708.2:c.75C>T
  hgvsp: ENST00000428708.2:c.75C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458964
  ensembl transcript: ENST00000575712
  gene symbol: BAIAP2
  hgvsc: ENST00000575712.1:c.75C>T
  hgvsp: ENST00000575712.1:c.75C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000315685
  ensembl transcript: ENST00000321280
  gene symbol: BAIAP2
  hgvsc: ENST00000321280.7:c.75C>T
  hgvsp: ENST00000321280.7:c.75C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460492
  ensembl transcript: ENST00000572329
  gene symbol: BAIAP2
  hgvsc: ENST00000572329.1:c.174C>T
  hgvsp: ENST00000572329.1:c.174C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000376211
  ensembl transcript: ENST00000392411
  gene symbol: BAIAP2
  hgvsc: ENST00000392411.3:c.-18+18380C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458494
  ensembl transcript: ENST00000575989
  gene symbol: BAIAP2
  hgvsc: ENST00000575989.1:c.-148C>T
  variant of: http://identifiers.org/hgnc/947
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1858
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6052
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7269
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5330
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4902
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn25Asn
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD

17-79027491-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79027491
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 79027491
    reference: chr 17
allele count: 1
allele frequency: 8.238861059847087e-6
allele num: 121376
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000315685
  ensembl transcript: ENST00000321280
  gene symbol: BAIAP2
  hgvsc: ENST00000321280.7:c.78T>C
  hgvsp: ENST00000321280.7:c.78T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460344
  ensembl transcript: ENST00000575750
  gene symbol: BAIAP2
  hgvsc: ENST00000575750.1:c.78T>C
  hgvsp: ENST00000575750.1:c.78T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000316338
  ensembl transcript: ENST00000321300
  gene symbol: BAIAP2
  hgvsc: ENST00000321300.6:c.78T>C
  hgvsp: ENST00000321300.6:c.78T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460131
  ensembl transcript: ENST00000572918
  gene symbol: BAIAP2
  hgvsc: ENST00000572918.1:c.18T>C
  hgvsp: ENST00000572918.1:c.18T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458494
  ensembl transcript: ENST00000575989
  gene symbol: BAIAP2
  hgvsc: ENST00000575989.1:c.-145T>C
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458964
  ensembl transcript: ENST00000575712
  gene symbol: BAIAP2
  hgvsc: ENST00000575712.1:c.78T>C
  hgvsp: ENST00000575712.1:c.78T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000576470
  gene symbol: BAIAP2
  hgvsc: ENST00000576470.1:n.185T>C
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461144
  ensembl transcript: ENST00000575245
  gene symbol: BAIAP2
  hgvsc: ENST00000575245.1:c.177T>C
  hgvsp: ENST00000575245.1:c.177T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000401022
  ensembl transcript: ENST00000428708
  gene symbol: BAIAP2
  hgvsc: ENST00000428708.2:c.78T>C
  hgvsp: ENST00000428708.2:c.78T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460492
  ensembl transcript: ENST00000572329
  gene symbol: BAIAP2
  hgvsc: ENST00000572329.1:c.177T>C
  hgvsp: ENST00000572329.1:c.177T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573017
  gene symbol: BAIAP2
  hgvsc: ENST00000573017.1:n.117T>C
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000413069
  ensembl transcript: ENST00000435091
  gene symbol: BAIAP2
  hgvsc: ENST00000435091.3:c.78T>C
  hgvsp: ENST00000435091.3:c.78T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458202
  ensembl transcript: ENST00000571530
  gene symbol: BAIAP2
  hgvsc: ENST00000571530.1:c.18T>C
  hgvsp: ENST00000571530.1:c.18T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573894
  gene symbol: BAIAP2
  hgvsc: ENST00000573894.1:n.157T>C
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000570913
  gene symbol: BAIAP2
  hgvsc: ENST00000570913.1:n.182T>C
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000376211
  ensembl transcript: ENST00000392411
  gene symbol: BAIAP2
  hgvsc: ENST00000392411.3:c.-18+18383T>C
  variant of: http://identifiers.org/hgnc/947
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6052
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6880
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3738
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3942
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2632
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro26Pro
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

17-79027511-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79027511
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 79027511
    reference: chr 17
allele count: 2
allele frequency: 1.647962294622699e-5
allele num: 121362
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000413069
  ensembl transcript: ENST00000435091
  gene symbol: BAIAP2
  hgvsc: ENST00000435091.3:c.98C>T
  hgvsp: ENSP00000413069.3:p.Ala33Val
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460344
  ensembl transcript: ENST00000575750
  gene symbol: BAIAP2
  hgvsc: ENST00000575750.1:c.98C>T
  hgvsp: ENSP00000460344.1:p.Ala33Val
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000401022
  ensembl transcript: ENST00000428708
  gene symbol: BAIAP2
  hgvsc: ENST00000428708.2:c.98C>T
  hgvsp: ENSP00000401022.2:p.Ala33Val
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000576470
  gene symbol: BAIAP2
  hgvsc: ENST00000576470.1:n.205C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460492
  ensembl transcript: ENST00000572329
  gene symbol: BAIAP2
  hgvsc: ENST00000572329.1:c.197C>T
  hgvsp: ENSP00000460492.1:p.Ala66Val
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000376211
  ensembl transcript: ENST00000392411
  gene symbol: BAIAP2
  hgvsc: ENST00000392411.3:c.-18+18403C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000315685
  ensembl transcript: ENST00000321280
  gene symbol: BAIAP2
  hgvsc: ENST00000321280.7:c.98C>T
  hgvsp: ENSP00000315685.7:p.Ala33Val
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458964
  ensembl transcript: ENST00000575712
  gene symbol: BAIAP2
  hgvsc: ENST00000575712.1:c.98C>T
  hgvsp: ENSP00000458964.1:p.Ala33Val
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000316338
  ensembl transcript: ENST00000321300
  gene symbol: BAIAP2
  hgvsc: ENST00000321300.6:c.98C>T
  hgvsp: ENSP00000316338.6:p.Ala33Val
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461144
  ensembl transcript: ENST00000575245
  gene symbol: BAIAP2
  hgvsc: ENST00000575245.1:c.197C>T
  hgvsp: ENSP00000461144.1:p.Ala66Val
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460131
  ensembl transcript: ENST00000572918
  gene symbol: BAIAP2
  hgvsc: ENST00000572918.1:c.38C>T
  hgvsp: ENSP00000460131.1:p.Ala13Val
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458202
  ensembl transcript: ENST00000571530
  gene symbol: BAIAP2
  hgvsc: ENST00000571530.1:c.38C>T
  hgvsp: ENSP00000458202.1:p.Ala13Val
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573894
  gene symbol: BAIAP2
  hgvsc: ENST00000573894.1:n.177C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458494
  ensembl transcript: ENST00000575989
  gene symbol: BAIAP2
  hgvsc: ENST00000575989.1:c.-125C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000570913
  gene symbol: BAIAP2
  hgvsc: ENST00000570913.1:n.202C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573017
  gene symbol: BAIAP2
  hgvsc: ENST00000573017.1:n.137C>T
  variant of: http://identifiers.org/hgnc/947
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5913
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1858
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6956
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4902
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala33Val
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

17-79027527-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79027527
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 79027527
    reference: chr 17
allele count: 11
allele frequency: 9.065884253383224e-5
allele num: 121334
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000401022
  ensembl transcript: ENST00000428708
  gene symbol: BAIAP2
  hgvsc: ENST00000428708.2:c.114C>T
  hgvsp: ENST00000428708.2:c.114C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458964
  ensembl transcript: ENST00000575712
  gene symbol: BAIAP2
  hgvsc: ENST00000575712.1:c.114C>T
  hgvsp: ENST00000575712.1:c.114C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460492
  ensembl transcript: ENST00000572329
  gene symbol: BAIAP2
  hgvsc: ENST00000572329.1:c.213C>T
  hgvsp: ENST00000572329.1:c.213C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458202
  ensembl transcript: ENST00000571530
  gene symbol: BAIAP2
  hgvsc: ENST00000571530.1:c.54C>T
  hgvsp: ENST00000571530.1:c.54C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000316338
  ensembl transcript: ENST00000321300
  gene symbol: BAIAP2
  hgvsc: ENST00000321300.6:c.114C>T
  hgvsp: ENST00000321300.6:c.114C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461144
  ensembl transcript: ENST00000575245
  gene symbol: BAIAP2
  hgvsc: ENST00000575245.1:c.213C>T
  hgvsp: ENST00000575245.1:c.213C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000413069
  ensembl transcript: ENST00000435091
  gene symbol: BAIAP2
  hgvsc: ENST00000435091.3:c.114C>T
  hgvsp: ENST00000435091.3:c.114C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458494
  ensembl transcript: ENST00000575989
  gene symbol: BAIAP2
  hgvsc: ENST00000575989.1:c.-109C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000570913
  gene symbol: BAIAP2
  hgvsc: ENST00000570913.1:n.218C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460131
  ensembl transcript: ENST00000572918
  gene symbol: BAIAP2
  hgvsc: ENST00000572918.1:c.54C>T
  hgvsp: ENST00000572918.1:c.54C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573894
  gene symbol: BAIAP2
  hgvsc: ENST00000573894.1:n.193C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000576470
  gene symbol: BAIAP2
  hgvsc: ENST00000576470.1:n.221C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000315685
  ensembl transcript: ENST00000321280
  gene symbol: BAIAP2
  hgvsc: ENST00000321280.7:c.114C>T
  hgvsp: ENST00000321280.7:c.114C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460344
  ensembl transcript: ENST00000575750
  gene symbol: BAIAP2
  hgvsc: ENST00000575750.1:c.114C>T
  hgvsp: ENST00000575750.1:c.114C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000376211
  ensembl transcript: ENST00000392411
  gene symbol: BAIAP2
  hgvsc: ENST00000392411.3:c.-18+18419C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573017
  gene symbol: BAIAP2
  hgvsc: ENST00000573017.1:n.153C>T
  variant of: http://identifiers.org/hgnc/947
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6052
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6880
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4902
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr38Tyr
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD

17-79027528-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79027528
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 79027528
    reference: chr 17
allele count: 1
allele frequency: 8.241577108195424e-6
allele num: 121336
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458964
  ensembl transcript: ENST00000575712
  gene symbol: BAIAP2
  hgvsc: ENST00000575712.1:c.115G>T
  hgvsp: ENSP00000458964.1:p.Glu39Ter
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000315685
  ensembl transcript: ENST00000321280
  gene symbol: BAIAP2
  hgvsc: ENST00000321280.7:c.115G>T
  hgvsp: ENSP00000315685.7:p.Glu39Ter
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461144
  ensembl transcript: ENST00000575245
  gene symbol: BAIAP2
  hgvsc: ENST00000575245.1:c.214G>T
  hgvsp: ENSP00000461144.1:p.Glu72Ter
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000576470
  gene symbol: BAIAP2
  hgvsc: ENST00000576470.1:n.222G>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000376211
  ensembl transcript: ENST00000392411
  gene symbol: BAIAP2
  hgvsc: ENST00000392411.3:c.-18+18420G>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000413069
  ensembl transcript: ENST00000435091
  gene symbol: BAIAP2
  hgvsc: ENST00000435091.3:c.115G>T
  hgvsp: ENSP00000413069.3:p.Glu39Ter
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460131
  ensembl transcript: ENST00000572918
  gene symbol: BAIAP2
  hgvsc: ENST00000572918.1:c.55G>T
  hgvsp: ENSP00000460131.1:p.Glu19Ter
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460344
  ensembl transcript: ENST00000575750
  gene symbol: BAIAP2
  hgvsc: ENST00000575750.1:c.115G>T
  hgvsp: ENSP00000460344.1:p.Glu39Ter
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458202
  ensembl transcript: ENST00000571530
  gene symbol: BAIAP2
  hgvsc: ENST00000571530.1:c.55G>T
  hgvsp: ENSP00000458202.1:p.Glu19Ter
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573894
  gene symbol: BAIAP2
  hgvsc: ENST00000573894.1:n.194G>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460492
  ensembl transcript: ENST00000572329
  gene symbol: BAIAP2
  hgvsc: ENST00000572329.1:c.214G>T
  hgvsp: ENSP00000460492.1:p.Glu72Ter
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000401022
  ensembl transcript: ENST00000428708
  gene symbol: BAIAP2
  hgvsc: ENST00000428708.2:c.115G>T
  hgvsp: ENSP00000401022.2:p.Glu39Ter
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000316338
  ensembl transcript: ENST00000321300
  gene symbol: BAIAP2
  hgvsc: ENST00000321300.6:c.115G>T
  hgvsp: ENSP00000316338.6:p.Glu39Ter
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573017
  gene symbol: BAIAP2
  hgvsc: ENST00000573017.1:n.154G>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000570913
  gene symbol: BAIAP2
  hgvsc: ENST00000570913.1:n.219G>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458494
  ensembl transcript: ENST00000575989
  gene symbol: BAIAP2
  hgvsc: ENST00000575989.1:c.-108G>T
  variant of: http://identifiers.org/hgnc/947
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6957
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1858
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5915
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu39Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

17-79027537-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79027537
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 79027537
    reference: chr 17
allele count: 11
allele frequency: 9.071566412113015e-5
allele num: 121258
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000315685
  ensembl transcript: ENST00000321280
  gene symbol: BAIAP2
  hgvsc: ENST00000321280.7:c.124C>T
  hgvsp: ENST00000321280.7:c.124C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000413069
  ensembl transcript: ENST00000435091
  gene symbol: BAIAP2
  hgvsc: ENST00000435091.3:c.124C>T
  hgvsp: ENST00000435091.3:c.124C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573894
  gene symbol: BAIAP2
  hgvsc: ENST00000573894.1:n.203C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461144
  ensembl transcript: ENST00000575245
  gene symbol: BAIAP2
  hgvsc: ENST00000575245.1:c.223C>T
  hgvsp: ENST00000575245.1:c.223C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000570913
  gene symbol: BAIAP2
  hgvsc: ENST00000570913.1:n.228C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000576470
  gene symbol: BAIAP2
  hgvsc: ENST00000576470.1:n.231C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000376211
  ensembl transcript: ENST00000392411
  gene symbol: BAIAP2
  hgvsc: ENST00000392411.3:c.-18+18429C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000316338
  ensembl transcript: ENST00000321300
  gene symbol: BAIAP2
  hgvsc: ENST00000321300.6:c.124C>T
  hgvsp: ENST00000321300.6:c.124C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458202
  ensembl transcript: ENST00000571530
  gene symbol: BAIAP2
  hgvsc: ENST00000571530.1:c.64C>T
  hgvsp: ENST00000571530.1:c.64C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460131
  ensembl transcript: ENST00000572918
  gene symbol: BAIAP2
  hgvsc: ENST00000572918.1:c.64C>T
  hgvsp: ENST00000572918.1:c.64C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458494
  ensembl transcript: ENST00000575989
  gene symbol: BAIAP2
  hgvsc: ENST00000575989.1:c.-99C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573017
  gene symbol: BAIAP2
  hgvsc: ENST00000573017.1:n.163C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460492
  ensembl transcript: ENST00000572329
  gene symbol: BAIAP2
  hgvsc: ENST00000572329.1:c.223C>T
  hgvsp: ENST00000572329.1:c.223C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458964
  ensembl transcript: ENST00000575712
  gene symbol: BAIAP2
  hgvsc: ENST00000575712.1:c.124C>T
  hgvsp: ENST00000575712.1:c.124C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460344
  ensembl transcript: ENST00000575750
  gene symbol: BAIAP2
  hgvsc: ENST00000575750.1:c.124C>T
  hgvsp: ENST00000575750.1:c.124C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000401022
  ensembl transcript: ENST00000428708
  gene symbol: BAIAP2
  hgvsc: ENST00000428708.2:c.124C>T
  hgvsp: ENST00000428708.2:c.124C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1859
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6955
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5900
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5287
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4901
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: n.163C>T
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

17-79027554-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79027554
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 79027554
    reference: chr 17
allele count: 1
allele frequency: 8.270751315049459e-6
allele num: 120908
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460131
  ensembl transcript: ENST00000572918
  gene symbol: BAIAP2
  hgvsc: ENST00000572918.1:c.70+11G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000570913
  gene symbol: BAIAP2
  hgvsc: ENST00000570913.1:n.234+11G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458494
  ensembl transcript: ENST00000575989
  gene symbol: BAIAP2
  hgvsc: ENST00000575989.1:c.-82G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000315685
  ensembl transcript: ENST00000321280
  gene symbol: BAIAP2
  hgvsc: ENST00000321280.7:c.130+11G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000376211
  ensembl transcript: ENST00000392411
  gene symbol: BAIAP2
  hgvsc: ENST00000392411.3:c.-18+18446G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460344
  ensembl transcript: ENST00000575750
  gene symbol: BAIAP2
  hgvsc: ENST00000575750.1:c.130+11G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461144
  ensembl transcript: ENST00000575245
  gene symbol: BAIAP2
  hgvsc: ENST00000575245.1:c.229+11G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460492
  ensembl transcript: ENST00000572329
  gene symbol: BAIAP2
  hgvsc: ENST00000572329.1:c.229+11G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000413069
  ensembl transcript: ENST00000435091
  gene symbol: BAIAP2
  hgvsc: ENST00000435091.3:c.130+11G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573017
  gene symbol: BAIAP2
  hgvsc: ENST00000573017.1:n.165+15G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000401022
  ensembl transcript: ENST00000428708
  gene symbol: BAIAP2
  hgvsc: ENST00000428708.2:c.130+11G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458202
  ensembl transcript: ENST00000571530
  gene symbol: BAIAP2
  hgvsc: ENST00000571530.1:c.70+11G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000316338
  ensembl transcript: ENST00000321300
  gene symbol: BAIAP2
  hgvsc: ENST00000321300.6:c.130+11G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573894
  gene symbol: BAIAP2
  hgvsc: ENST00000573894.1:n.209+11G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000576470
  gene symbol: BAIAP2
  hgvsc: ENST00000576470.1:n.237+11G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458964
  ensembl transcript: ENST00000575712
  gene symbol: BAIAP2
  hgvsc: ENST00000575712.1:c.130+11G>A
  variant of: http://identifiers.org/hgnc/947
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4892
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1272
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1851
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7236
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3716
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum

17-79027555-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79027555
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 79027555
    reference: chr 17
allele count: 1
allele frequency: 8.271024945411235e-6
allele num: 120904
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458964
  ensembl transcript: ENST00000575712
  gene symbol: BAIAP2
  hgvsc: ENST00000575712.1:c.130+12C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000413069
  ensembl transcript: ENST00000435091
  gene symbol: BAIAP2
  hgvsc: ENST00000435091.3:c.130+12C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000401022
  ensembl transcript: ENST00000428708
  gene symbol: BAIAP2
  hgvsc: ENST00000428708.2:c.130+12C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573017
  gene symbol: BAIAP2
  hgvsc: ENST00000573017.1:n.165+16C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000315685
  ensembl transcript: ENST00000321280
  gene symbol: BAIAP2
  hgvsc: ENST00000321280.7:c.130+12C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460492
  ensembl transcript: ENST00000572329
  gene symbol: BAIAP2
  hgvsc: ENST00000572329.1:c.229+12C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573894
  gene symbol: BAIAP2
  hgvsc: ENST00000573894.1:n.209+12C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458202
  ensembl transcript: ENST00000571530
  gene symbol: BAIAP2
  hgvsc: ENST00000571530.1:c.70+12C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000316338
  ensembl transcript: ENST00000321300
  gene symbol: BAIAP2
  hgvsc: ENST00000321300.6:c.130+12C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458494
  ensembl transcript: ENST00000575989
  gene symbol: BAIAP2
  hgvsc: ENST00000575989.1:c.-81C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460131
  ensembl transcript: ENST00000572918
  gene symbol: BAIAP2
  hgvsc: ENST00000572918.1:c.70+12C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000576470
  gene symbol: BAIAP2
  hgvsc: ENST00000576470.1:n.237+12C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461144
  ensembl transcript: ENST00000575245
  gene symbol: BAIAP2
  hgvsc: ENST00000575245.1:c.229+12C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000376211
  ensembl transcript: ENST00000392411
  gene symbol: BAIAP2
  hgvsc: ENST00000392411.3:c.-18+18447C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460344
  ensembl transcript: ENST00000575750
  gene symbol: BAIAP2
  hgvsc: ENST00000575750.1:c.130+12C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000570913
  gene symbol: BAIAP2
  hgvsc: ENST00000570913.1:n.234+12C>T
  variant of: http://identifiers.org/hgnc/947
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2626
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6029
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4890
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5143
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6786
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5812
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: QD

17-79027556-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79027556
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 79027556
    reference: chr 17
allele count: 1
allele frequency: 8.270614506657845e-6
allele num: 120910
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460131
  ensembl transcript: ENST00000572918
  gene symbol: BAIAP2
  hgvsc: ENST00000572918.1:c.70+13C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460344
  ensembl transcript: ENST00000575750
  gene symbol: BAIAP2
  hgvsc: ENST00000575750.1:c.130+13C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458964
  ensembl transcript: ENST00000575712
  gene symbol: BAIAP2
  hgvsc: ENST00000575712.1:c.130+13C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000570913
  gene symbol: BAIAP2
  hgvsc: ENST00000570913.1:n.234+13C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458494
  ensembl transcript: ENST00000575989
  gene symbol: BAIAP2
  hgvsc: ENST00000575989.1:c.-80C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000413069
  ensembl transcript: ENST00000435091
  gene symbol: BAIAP2
  hgvsc: ENST00000435091.3:c.130+13C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000576470
  gene symbol: BAIAP2
  hgvsc: ENST00000576470.1:n.237+13C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573017
  gene symbol: BAIAP2
  hgvsc: ENST00000573017.1:n.165+17C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458202
  ensembl transcript: ENST00000571530
  gene symbol: BAIAP2
  hgvsc: ENST00000571530.1:c.70+13C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000316338
  ensembl transcript: ENST00000321300
  gene symbol: BAIAP2
  hgvsc: ENST00000321300.6:c.130+13C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461144
  ensembl transcript: ENST00000575245
  gene symbol: BAIAP2
  hgvsc: ENST00000575245.1:c.229+13C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000315685
  ensembl transcript: ENST00000321280
  gene symbol: BAIAP2
  hgvsc: ENST00000321280.7:c.130+13C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460492
  ensembl transcript: ENST00000572329
  gene symbol: BAIAP2
  hgvsc: ENST00000572329.1:c.229+13C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000401022
  ensembl transcript: ENST00000428708
  gene symbol: BAIAP2
  hgvsc: ENST00000428708.2:c.130+13C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573894
  gene symbol: BAIAP2
  hgvsc: ENST00000573894.1:n.209+13C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000376211
  ensembl transcript: ENST00000392411
  gene symbol: BAIAP2
  hgvsc: ENST00000392411.3:c.-18+18448C>T
  variant of: http://identifiers.org/hgnc/947
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7224
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3715
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6785
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3803
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5806
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

17-79027557-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79027557
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 79027557
    reference: chr 17
allele count: 2
allele frequency: 1.654423929587718e-5
allele num: 120888
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461144
  ensembl transcript: ENST00000575245
  gene symbol: BAIAP2
  hgvsc: ENST00000575245.1:c.229+14C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458494
  ensembl transcript: ENST00000575989
  gene symbol: BAIAP2
  hgvsc: ENST00000575989.1:c.-79C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460131
  ensembl transcript: ENST00000572918
  gene symbol: BAIAP2
  hgvsc: ENST00000572918.1:c.70+14C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573017
  gene symbol: BAIAP2
  hgvsc: ENST00000573017.1:n.165+18C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000413069
  ensembl transcript: ENST00000435091
  gene symbol: BAIAP2
  hgvsc: ENST00000435091.3:c.130+14C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573894
  gene symbol: BAIAP2
  hgvsc: ENST00000573894.1:n.209+14C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458202
  ensembl transcript: ENST00000571530
  gene symbol: BAIAP2
  hgvsc: ENST00000571530.1:c.70+14C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458964
  ensembl transcript: ENST00000575712
  gene symbol: BAIAP2
  hgvsc: ENST00000575712.1:c.130+14C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000570913
  gene symbol: BAIAP2
  hgvsc: ENST00000570913.1:n.234+14C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000315685
  ensembl transcript: ENST00000321280
  gene symbol: BAIAP2
  hgvsc: ENST00000321280.7:c.130+14C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000401022
  ensembl transcript: ENST00000428708
  gene symbol: BAIAP2
  hgvsc: ENST00000428708.2:c.130+14C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000576470
  gene symbol: BAIAP2
  hgvsc: ENST00000576470.1:n.237+14C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460492
  ensembl transcript: ENST00000572329
  gene symbol: BAIAP2
  hgvsc: ENST00000572329.1:c.229+14C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000376211
  ensembl transcript: ENST00000392411
  gene symbol: BAIAP2
  hgvsc: ENST00000392411.3:c.-18+18449C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460344
  ensembl transcript: ENST00000575750
  gene symbol: BAIAP2
  hgvsc: ENST00000575750.1:c.130+14C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000316338
  ensembl transcript: ENST00000321300
  gene symbol: BAIAP2
  hgvsc: ENST00000321300.6:c.130+14C>T
  variant of: http://identifiers.org/hgnc/947
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3791
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2626
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5805
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6778
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD

17-79027557-CG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79027557
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 79027556
    reference: chr 17
allele count: 1
allele frequency: 8.272119647938589e-6
allele num: 120888
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000576470
  gene symbol: BAIAP2
  hgvsc: ENST00000576470.1:n.237+17delG
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000401022
  ensembl transcript: ENST00000428708
  gene symbol: BAIAP2
  hgvsc: ENST00000428708.2:c.130+17delG
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458202
  ensembl transcript: ENST00000571530
  gene symbol: BAIAP2
  hgvsc: ENST00000571530.1:c.70+17delG
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573017
  gene symbol: BAIAP2
  hgvsc: ENST00000573017.1:n.165+21delG
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000316338
  ensembl transcript: ENST00000321300
  gene symbol: BAIAP2
  hgvsc: ENST00000321300.6:c.130+17delG
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460492
  ensembl transcript: ENST00000572329
  gene symbol: BAIAP2
  hgvsc: ENST00000572329.1:c.229+17delG
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460344
  ensembl transcript: ENST00000575750
  gene symbol: BAIAP2
  hgvsc: ENST00000575750.1:c.130+17delG
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000376211
  ensembl transcript: ENST00000392411
  gene symbol: BAIAP2
  hgvsc: ENST00000392411.3:c.-18+18452delG
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000315685
  ensembl transcript: ENST00000321280
  gene symbol: BAIAP2
  hgvsc: ENST00000321280.7:c.130+17delG
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573894
  gene symbol: BAIAP2
  hgvsc: ENST00000573894.1:n.209+17delG
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458494
  ensembl transcript: ENST00000575989
  gene symbol: BAIAP2
  hgvsc: ENST00000575989.1:c.-76delG
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000413069
  ensembl transcript: ENST00000435091
  gene symbol: BAIAP2
  hgvsc: ENST00000435091.3:c.130+17delG
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461144
  ensembl transcript: ENST00000575245
  gene symbol: BAIAP2
  hgvsc: ENST00000575245.1:c.229+17delG
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460131
  ensembl transcript: ENST00000572918
  gene symbol: BAIAP2
  hgvsc: ENST00000572918.1:c.70+17delG
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000570913
  gene symbol: BAIAP2
  hgvsc: ENST00000570913.1:n.234+17delG
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458964
  ensembl transcript: ENST00000575712
  gene symbol: BAIAP2
  hgvsc: ENST00000575712.1:c.130+17delG
  variant of: http://identifiers.org/hgnc/947
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6906
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5140
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2626
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6778
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5805
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3791
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
reference allele: CG
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

17-79027558-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79027558
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 79027558
    reference: chr 17
allele count: 13
allele frequency: 1.075500107550011e-4
allele num: 120874
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461144
  ensembl transcript: ENST00000575245
  gene symbol: BAIAP2
  hgvsc: ENST00000575245.1:c.229+15G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000570913
  gene symbol: BAIAP2
  hgvsc: ENST00000570913.1:n.234+15G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573017
  gene symbol: BAIAP2
  hgvsc: ENST00000573017.1:n.165+19G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000316338
  ensembl transcript: ENST00000321300
  gene symbol: BAIAP2
  hgvsc: ENST00000321300.6:c.130+15G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000401022
  ensembl transcript: ENST00000428708
  gene symbol: BAIAP2
  hgvsc: ENST00000428708.2:c.130+15G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460344
  ensembl transcript: ENST00000575750
  gene symbol: BAIAP2
  hgvsc: ENST00000575750.1:c.130+15G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000413069
  ensembl transcript: ENST00000435091
  gene symbol: BAIAP2
  hgvsc: ENST00000435091.3:c.130+15G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458964
  ensembl transcript: ENST00000575712
  gene symbol: BAIAP2
  hgvsc: ENST00000575712.1:c.130+15G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460131
  ensembl transcript: ENST00000572918
  gene symbol: BAIAP2
  hgvsc: ENST00000572918.1:c.70+15G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458494
  ensembl transcript: ENST00000575989
  gene symbol: BAIAP2
  hgvsc: ENST00000575989.1:c.-78G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000376211
  ensembl transcript: ENST00000392411
  gene symbol: BAIAP2
  hgvsc: ENST00000392411.3:c.-18+18450G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000315685
  ensembl transcript: ENST00000321280
  gene symbol: BAIAP2
  hgvsc: ENST00000321280.7:c.130+15G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460492
  ensembl transcript: ENST00000572329
  gene symbol: BAIAP2
  hgvsc: ENST00000572329.1:c.229+15G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573894
  gene symbol: BAIAP2
  hgvsc: ENST00000573894.1:n.209+15G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458202
  ensembl transcript: ENST00000571530
  gene symbol: BAIAP2
  hgvsc: ENST00000571530.1:c.70+15G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000576470
  gene symbol: BAIAP2
  hgvsc: ENST00000576470.1:n.237+15G>A
  variant of: http://identifiers.org/hgnc/947
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3751
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1853
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5109
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1270
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5781
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

17-79027558-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79027558
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 79027558
    reference: chr 17
allele count: 5
allele frequency: 4.136538875192349e-5
allele num: 120874
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000315685
  ensembl transcript: ENST00000321280
  gene symbol: BAIAP2
  hgvsc: ENST00000321280.7:c.130+15G>C
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461144
  ensembl transcript: ENST00000575245
  gene symbol: BAIAP2
  hgvsc: ENST00000575245.1:c.229+15G>C
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458964
  ensembl transcript: ENST00000575712
  gene symbol: BAIAP2
  hgvsc: ENST00000575712.1:c.130+15G>C
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000576470
  gene symbol: BAIAP2
  hgvsc: ENST00000576470.1:n.237+15G>C
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458494
  ensembl transcript: ENST00000575989
  gene symbol: BAIAP2
  hgvsc: ENST00000575989.1:c.-78G>C
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000413069
  ensembl transcript: ENST00000435091
  gene symbol: BAIAP2
  hgvsc: ENST00000435091.3:c.130+15G>C
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573894
  gene symbol: BAIAP2
  hgvsc: ENST00000573894.1:n.209+15G>C
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458202
  ensembl transcript: ENST00000571530
  gene symbol: BAIAP2
  hgvsc: ENST00000571530.1:c.70+15G>C
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460344
  ensembl transcript: ENST00000575750
  gene symbol: BAIAP2
  hgvsc: ENST00000575750.1:c.130+15G>C
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460131
  ensembl transcript: ENST00000572918
  gene symbol: BAIAP2
  hgvsc: ENST00000572918.1:c.70+15G>C
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000570913
  gene symbol: BAIAP2
  hgvsc: ENST00000570913.1:n.234+15G>C
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000316338
  ensembl transcript: ENST00000321300
  gene symbol: BAIAP2
  hgvsc: ENST00000321300.6:c.130+15G>C
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000376211
  ensembl transcript: ENST00000392411
  gene symbol: BAIAP2
  hgvsc: ENST00000392411.3:c.-18+18450G>C
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000401022
  ensembl transcript: ENST00000428708
  gene symbol: BAIAP2
  hgvsc: ENST00000428708.2:c.130+15G>C
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460492
  ensembl transcript: ENST00000572329
  gene symbol: BAIAP2
  hgvsc: ENST00000572329.1:c.229+15G>C
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573017
  gene symbol: BAIAP2
  hgvsc: ENST00000573017.1:n.165+19G>C
  variant of: http://identifiers.org/hgnc/947
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3751
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2628
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5781
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3714
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1270
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6770
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

17-79027564-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79027564
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 79027564
    reference: chr 17
allele count: 12
allele frequency: 9.930815319937767e-5
allele num: 120836
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458202
  ensembl transcript: ENST00000571530
  gene symbol: BAIAP2
  hgvsc: ENST00000571530.1:c.70+21C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000576470
  gene symbol: BAIAP2
  hgvsc: ENST00000576470.1:n.237+21C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458964
  ensembl transcript: ENST00000575712
  gene symbol: BAIAP2
  hgvsc: ENST00000575712.1:c.130+21C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000413069
  ensembl transcript: ENST00000435091
  gene symbol: BAIAP2
  hgvsc: ENST00000435091.3:c.130+21C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000376211
  ensembl transcript: ENST00000392411
  gene symbol: BAIAP2
  hgvsc: ENST00000392411.3:c.-18+18456C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000401022
  ensembl transcript: ENST00000428708
  gene symbol: BAIAP2
  hgvsc: ENST00000428708.2:c.130+21C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000316338
  ensembl transcript: ENST00000321300
  gene symbol: BAIAP2
  hgvsc: ENST00000321300.6:c.130+21C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458494
  ensembl transcript: ENST00000575989
  gene symbol: BAIAP2
  hgvsc: ENST00000575989.1:c.-72C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460344
  ensembl transcript: ENST00000575750
  gene symbol: BAIAP2
  hgvsc: ENST00000575750.1:c.130+21C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460131
  ensembl transcript: ENST00000572918
  gene symbol: BAIAP2
  hgvsc: ENST00000572918.1:c.70+21C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573017
  gene symbol: BAIAP2
  hgvsc: ENST00000573017.1:n.165+25C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460492
  ensembl transcript: ENST00000572329
  gene symbol: BAIAP2
  hgvsc: ENST00000572329.1:c.229+21C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000570913
  gene symbol: BAIAP2
  hgvsc: ENST00000570913.1:n.234+21C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461144
  ensembl transcript: ENST00000575245
  gene symbol: BAIAP2
  hgvsc: ENST00000575245.1:c.229+21C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573894
  gene symbol: BAIAP2
  hgvsc: ENST00000573894.1:n.209+21C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000315685
  ensembl transcript: ENST00000321280
  gene symbol: BAIAP2
  hgvsc: ENST00000321280.7:c.130+21C>T
  variant of: http://identifiers.org/hgnc/947
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5762
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3725
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6905
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1270
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5045
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7213
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2626
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS

17-79027565-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79027565
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 79027565
    reference: chr 17
allele count: 771
allele frequency: 6.381605085419149e-3
allele num: 120816
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000315685
  ensembl transcript: ENST00000321280
  gene symbol: BAIAP2
  hgvsc: ENST00000321280.7:c.130+22G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460492
  ensembl transcript: ENST00000572329
  gene symbol: BAIAP2
  hgvsc: ENST00000572329.1:c.229+22G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000401022
  ensembl transcript: ENST00000428708
  gene symbol: BAIAP2
  hgvsc: ENST00000428708.2:c.130+22G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000570913
  gene symbol: BAIAP2
  hgvsc: ENST00000570913.1:n.234+22G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460344
  ensembl transcript: ENST00000575750
  gene symbol: BAIAP2
  hgvsc: ENST00000575750.1:c.130+22G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458964
  ensembl transcript: ENST00000575712
  gene symbol: BAIAP2
  hgvsc: ENST00000575712.1:c.130+22G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000576470
  gene symbol: BAIAP2
  hgvsc: ENST00000576470.1:n.237+22G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460131
  ensembl transcript: ENST00000572918
  gene symbol: BAIAP2
  hgvsc: ENST00000572918.1:c.70+22G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458202
  ensembl transcript: ENST00000571530
  gene symbol: BAIAP2
  hgvsc: ENST00000571530.1:c.70+22G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458494
  ensembl transcript: ENST00000575989
  gene symbol: BAIAP2
  hgvsc: ENST00000575989.1:c.-71G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000316338
  ensembl transcript: ENST00000321300
  gene symbol: BAIAP2
  hgvsc: ENST00000321300.6:c.130+22G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573894
  gene symbol: BAIAP2
  hgvsc: ENST00000573894.1:n.209+22G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461144
  ensembl transcript: ENST00000575245
  gene symbol: BAIAP2
  hgvsc: ENST00000575245.1:c.229+22G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000413069
  ensembl transcript: ENST00000435091
  gene symbol: BAIAP2
  hgvsc: ENST00000435091.3:c.130+22G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573017
  gene symbol: BAIAP2
  hgvsc: ENST00000573017.1:n.165+26G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000376211
  ensembl transcript: ENST00000392411
  gene symbol: BAIAP2
  hgvsc: ENST00000392411.3:c.-18+18457G>A
  variant of: http://identifiers.org/hgnc/947
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3700
  bin: 2.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 5013
  bin: 3.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 8.25e1
  variant carriers: 63
genotype depth: GenotypeDepth
  all individuals: 7213
  bin: 4.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 1848
  bin: 7.75e1
  variant carriers: 67
genotype depth: GenotypeDepth
  all individuals: 6756
  bin: 4.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6037
  bin: 5.75e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 9.75e1
  variant carriers: 165
genotype quality: GenotypeQuality
num of homozygotes: 4
population: African
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum

17-79027567-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79027567
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 79027567
    reference: chr 17
allele count: 6
allele frequency: 4.966311851275515e-5
allele num: 120814
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000570913
  gene symbol: BAIAP2
  hgvsc: ENST00000570913.1:n.234+24G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000315685
  ensembl transcript: ENST00000321280
  gene symbol: BAIAP2
  hgvsc: ENST00000321280.7:c.130+24G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458964
  ensembl transcript: ENST00000575712
  gene symbol: BAIAP2
  hgvsc: ENST00000575712.1:c.130+24G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000413069
  ensembl transcript: ENST00000435091
  gene symbol: BAIAP2
  hgvsc: ENST00000435091.3:c.130+24G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461144
  ensembl transcript: ENST00000575245
  gene symbol: BAIAP2
  hgvsc: ENST00000575245.1:c.229+24G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458494
  ensembl transcript: ENST00000575989
  gene symbol: BAIAP2
  hgvsc: ENST00000575989.1:c.-69G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000401022
  ensembl transcript: ENST00000428708
  gene symbol: BAIAP2
  hgvsc: ENST00000428708.2:c.130+24G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000576470
  gene symbol: BAIAP2
  hgvsc: ENST00000576470.1:n.237+24G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573894
  gene symbol: BAIAP2
  hgvsc: ENST00000573894.1:n.209+24G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460131
  ensembl transcript: ENST00000572918
  gene symbol: BAIAP2
  hgvsc: ENST00000572918.1:c.70+24G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573017
  gene symbol: BAIAP2
  hgvsc: ENST00000573017.1:n.165+28G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460344
  ensembl transcript: ENST00000575750
  gene symbol: BAIAP2
  hgvsc: ENST00000575750.1:c.130+24G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460492
  ensembl transcript: ENST00000572329
  gene symbol: BAIAP2
  hgvsc: ENST00000572329.1:c.229+24G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458202
  ensembl transcript: ENST00000571530
  gene symbol: BAIAP2
  hgvsc: ENST00000571530.1:c.70+24G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000316338
  ensembl transcript: ENST00000321300
  gene symbol: BAIAP2
  hgvsc: ENST00000321300.6:c.130+24G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000376211
  ensembl transcript: ENST00000392411
  gene symbol: BAIAP2
  hgvsc: ENST00000392411.3:c.-18+18459G>A
  variant of: http://identifiers.org/hgnc/947
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7273
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6964
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4913
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2597
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3684
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3703
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6826
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1803
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP

17-79027587-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79027587
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 79027587
    reference: chr 17
allele count: 27
allele frequency: 2.241147467503362e-4
allele num: 120474
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000315685
  ensembl transcript: ENST00000321280
  gene symbol: BAIAP2
  hgvsc: ENST00000321280.7:c.130+44A>G
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461144
  ensembl transcript: ENST00000575245
  gene symbol: BAIAP2
  hgvsc: ENST00000575245.1:c.229+44A>G
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000570913
  gene symbol: BAIAP2
  hgvsc: ENST00000570913.1:n.234+44A>G
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458202
  ensembl transcript: ENST00000571530
  gene symbol: BAIAP2
  hgvsc: ENST00000571530.1:c.70+44A>G
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460344
  ensembl transcript: ENST00000575750
  gene symbol: BAIAP2
  hgvsc: ENST00000575750.1:c.130+44A>G
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000376211
  ensembl transcript: ENST00000392411
  gene symbol: BAIAP2
  hgvsc: ENST00000392411.3:c.-18+18479A>G
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458494
  ensembl transcript: ENST00000575989
  gene symbol: BAIAP2
  hgvsc: ENST00000575989.1:c.-49A>G
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000576470
  gene symbol: BAIAP2
  hgvsc: ENST00000576470.1:n.237+44A>G
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000401022
  ensembl transcript: ENST00000428708
  gene symbol: BAIAP2
  hgvsc: ENST00000428708.2:c.130+44A>G
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458964
  ensembl transcript: ENST00000575712
  gene symbol: BAIAP2
  hgvsc: ENST00000575712.1:c.130+44A>G
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460131
  ensembl transcript: ENST00000572918
  gene symbol: BAIAP2
  hgvsc: ENST00000572918.1:c.70+44A>G
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000413069
  ensembl transcript: ENST00000435091
  gene symbol: BAIAP2
  hgvsc: ENST00000435091.3:c.130+44A>G
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573894
  gene symbol: BAIAP2
  hgvsc: ENST00000573894.1:n.209+44A>G
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460492
  ensembl transcript: ENST00000572329
  gene symbol: BAIAP2
  hgvsc: ENST00000572329.1:c.229+44A>G
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573017
  gene symbol: BAIAP2
  hgvsc: ENST00000573017.1:n.165+48A>G
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000316338
  ensembl transcript: ENST00000321300
  gene symbol: BAIAP2
  hgvsc: ENST00000321300.6:c.130+44A>G
  variant of: http://identifiers.org/hgnc/947
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7261
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1802
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4910
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6957
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4633
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3704
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: African
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum

17-79027588-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79027588
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 79027588
    reference: chr 17
allele count: 2
allele frequency: 1.659448067572725e-5
allele num: 120522
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000401022
  ensembl transcript: ENST00000428708
  gene symbol: BAIAP2
  hgvsc: ENST00000428708.2:c.130+45G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000413069
  ensembl transcript: ENST00000435091
  gene symbol: BAIAP2
  hgvsc: ENST00000435091.3:c.130+45G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461144
  ensembl transcript: ENST00000575245
  gene symbol: BAIAP2
  hgvsc: ENST00000575245.1:c.229+45G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573017
  gene symbol: BAIAP2
  hgvsc: ENST00000573017.1:n.165+49G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458494
  ensembl transcript: ENST00000575989
  gene symbol: BAIAP2
  hgvsc: ENST00000575989.1:c.-48G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000316338
  ensembl transcript: ENST00000321300
  gene symbol: BAIAP2
  hgvsc: ENST00000321300.6:c.130+45G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460492
  ensembl transcript: ENST00000572329
  gene symbol: BAIAP2
  hgvsc: ENST00000572329.1:c.229+45G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458202
  ensembl transcript: ENST00000571530
  gene symbol: BAIAP2
  hgvsc: ENST00000571530.1:c.70+45G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000570913
  gene symbol: BAIAP2
  hgvsc: ENST00000570913.1:n.234+45G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458964
  ensembl transcript: ENST00000575712
  gene symbol: BAIAP2
  hgvsc: ENST00000575712.1:c.130+45G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460344
  ensembl transcript: ENST00000575750
  gene symbol: BAIAP2
  hgvsc: ENST00000575750.1:c.130+45G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460131
  ensembl transcript: ENST00000572918
  gene symbol: BAIAP2
  hgvsc: ENST00000572918.1:c.70+45G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573894
  gene symbol: BAIAP2
  hgvsc: ENST00000573894.1:n.209+45G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000315685
  ensembl transcript: ENST00000321280
  gene symbol: BAIAP2
  hgvsc: ENST00000321280.7:c.130+45G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000576470
  gene symbol: BAIAP2
  hgvsc: ENST00000576470.1:n.237+45G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000376211
  ensembl transcript: ENST00000392411
  gene symbol: BAIAP2
  hgvsc: ENST00000392411.3:c.-18+18480G>A
  variant of: http://identifiers.org/hgnc/947
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6783
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1800
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5692
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6076
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4630
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: DP

17-79027593-TAGA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79027593
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 79027590
    reference: chr 17
allele count: 1
allele frequency: 8.313934153641504e-6
allele num: 120280
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000376211
  ensembl transcript: ENST00000392411
  gene symbol: BAIAP2
  hgvsc: ENST00000392411.3:c.-18+18487_-18+18489delGAA
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460131
  ensembl transcript: ENST00000572918
  gene symbol: BAIAP2
  hgvsc: ENST00000572918.1:c.70+52_70+54delGAA
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000401022
  ensembl transcript: ENST00000428708
  gene symbol: BAIAP2
  hgvsc: ENST00000428708.2:c.130+52_130+54delGAA
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458494
  ensembl transcript: ENST00000575989
  gene symbol: BAIAP2
  hgvsc: ENST00000575989.1:c.-45+4_-45+6delGAA
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573894
  gene symbol: BAIAP2
  hgvsc: ENST00000573894.1:n.209+52_209+54delGAA
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000316338
  ensembl transcript: ENST00000321300
  gene symbol: BAIAP2
  hgvsc: ENST00000321300.6:c.130+52_130+54delGAA
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458964
  ensembl transcript: ENST00000575712
  gene symbol: BAIAP2
  hgvsc: ENST00000575712.1:c.130+52_130+54delGAA
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460492
  ensembl transcript: ENST00000572329
  gene symbol: BAIAP2
  hgvsc: ENST00000572329.1:c.229+52_229+54delGAA
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458202
  ensembl transcript: ENST00000571530
  gene symbol: BAIAP2
  hgvsc: ENST00000571530.1:c.70+52_70+54delGAA
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000413069
  ensembl transcript: ENST00000435091
  gene symbol: BAIAP2
  hgvsc: ENST00000435091.3:c.130+52_130+54delGAA
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000576470
  gene symbol: BAIAP2
  hgvsc: ENST00000576470.1:n.237+52_237+54delGAA
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000570913
  gene symbol: BAIAP2
  hgvsc: ENST00000570913.1:n.234+52_234+54delGAA
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573017
  gene symbol: BAIAP2
  hgvsc: ENST00000573017.1:n.165+56_165+58delGAA
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460344
  ensembl transcript: ENST00000575750
  gene symbol: BAIAP2
  hgvsc: ENST00000575750.1:c.130+52_130+54delGAA
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461144
  ensembl transcript: ENST00000575245
  gene symbol: BAIAP2
  hgvsc: ENST00000575245.1:c.229+52_229+54delGAA
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000315685
  ensembl transcript: ENST00000321280
  gene symbol: BAIAP2
  hgvsc: ENST00000321280.7:c.130+52_130+54delGAA
  variant of: http://identifiers.org/hgnc/947
canonical: false
consequence: splice region
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 1801
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7248
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6773
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2887
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2596
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.-45+4_-45+6delGAA
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: TAGA
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

17-79031637-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79031637
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 79031637
    reference: chr 17
allele count: 2
allele frequency: 1.825483753194597e-5
allele num: 109560
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000570913
  gene symbol: BAIAP2
  hgvsc: ENST00000570913.1:n.235-44G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000401022
  ensembl transcript: ENST00000428708
  gene symbol: BAIAP2
  hgvsc: ENST00000428708.2:c.131-44G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000576470
  gene symbol: BAIAP2
  hgvsc: ENST00000576470.1:n.238-44G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458202
  ensembl transcript: ENST00000571530
  gene symbol: BAIAP2
  hgvsc: ENST00000571530.1:c.71-44G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460344
  ensembl transcript: ENST00000575750
  gene symbol: BAIAP2
  hgvsc: ENST00000575750.1:c.131-44G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573894
  gene symbol: BAIAP2
  hgvsc: ENST00000573894.1:n.210-44G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460492
  ensembl transcript: ENST00000572329
  gene symbol: BAIAP2
  hgvsc: ENST00000572329.1:c.230-44G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458964
  ensembl transcript: ENST00000575712
  gene symbol: BAIAP2
  hgvsc: ENST00000575712.1:c.131-44G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000459730
  ensembl transcript: ENST00000574804
  gene symbol: BAIAP2
  hgvsc: ENST00000574804.1:c.-45+43G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000413069
  ensembl transcript: ENST00000435091
  gene symbol: BAIAP2
  hgvsc: ENST00000435091.3:c.131-44G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000316338
  ensembl transcript: ENST00000321300
  gene symbol: BAIAP2
  hgvsc: ENST00000321300.6:c.131-44G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000376211
  ensembl transcript: ENST00000392411
  gene symbol: BAIAP2
  hgvsc: ENST00000392411.3:c.-18+22529G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460131
  ensembl transcript: ENST00000572918
  gene symbol: BAIAP2
  hgvsc: ENST00000572918.1:c.71-44G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458494
  ensembl transcript: ENST00000575989
  gene symbol: BAIAP2
  hgvsc: ENST00000575989.1:c.-44-44G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458735
  ensembl transcript: ENST00000573677
  gene symbol: BAIAP2
  hgvsc: ENST00000573677.1:c.-45+43G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000459787
  ensembl transcript: ENST00000572073
  gene symbol: BAIAP2
  hgvsc: ENST00000572073.1:c.-44-44G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573017
  gene symbol: BAIAP2
  hgvsc: ENST00000573017.1:n.166-44G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461736
  ensembl transcript: ENST00000573659
  gene symbol: BAIAP2
  hgvsc: ENST00000573659.1:c.-44-44G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458522
  ensembl transcript: ENST00000575958
  gene symbol: BAIAP2
  hgvsc: ENST00000575958.1:c.-44-44G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461144
  ensembl transcript: ENST00000575245
  gene symbol: BAIAP2
  hgvsc: ENST00000575245.1:c.230-44G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000315685
  ensembl transcript: ENST00000321280
  gene symbol: BAIAP2
  hgvsc: ENST00000321280.7:c.131-44G>A
  variant of: http://identifiers.org/hgnc/947
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: QD

17-79031638-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79031638
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 79031638
    reference: chr 17
allele count: 1
allele frequency: 9.102162673851307e-6
allele num: 109864
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000401022
  ensembl transcript: ENST00000428708
  gene symbol: BAIAP2
  hgvsc: ENST00000428708.2:c.131-43T>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458735
  ensembl transcript: ENST00000573677
  gene symbol: BAIAP2
  hgvsc: ENST00000573677.1:c.-44-43T>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000316338
  ensembl transcript: ENST00000321300
  gene symbol: BAIAP2
  hgvsc: ENST00000321300.6:c.131-43T>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458494
  ensembl transcript: ENST00000575989
  gene symbol: BAIAP2
  hgvsc: ENST00000575989.1:c.-44-43T>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000315685
  ensembl transcript: ENST00000321280
  gene symbol: BAIAP2
  hgvsc: ENST00000321280.7:c.131-43T>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460492
  ensembl transcript: ENST00000572329
  gene symbol: BAIAP2
  hgvsc: ENST00000572329.1:c.230-43T>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000413069
  ensembl transcript: ENST00000435091
  gene symbol: BAIAP2
  hgvsc: ENST00000435091.3:c.131-43T>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461144
  ensembl transcript: ENST00000575245
  gene symbol: BAIAP2
  hgvsc: ENST00000575245.1:c.230-43T>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000570913
  gene symbol: BAIAP2
  hgvsc: ENST00000570913.1:n.235-43T>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458522
  ensembl transcript: ENST00000575958
  gene symbol: BAIAP2
  hgvsc: ENST00000575958.1:c.-44-43T>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458964
  ensembl transcript: ENST00000575712
  gene symbol: BAIAP2
  hgvsc: ENST00000575712.1:c.131-43T>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000576470
  gene symbol: BAIAP2
  hgvsc: ENST00000576470.1:n.238-43T>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000459787
  ensembl transcript: ENST00000572073
  gene symbol: BAIAP2
  hgvsc: ENST00000572073.1:c.-44-43T>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460131
  ensembl transcript: ENST00000572918
  gene symbol: BAIAP2
  hgvsc: ENST00000572918.1:c.71-43T>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000376211
  ensembl transcript: ENST00000392411
  gene symbol: BAIAP2
  hgvsc: ENST00000392411.3:c.-18+22530T>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460344
  ensembl transcript: ENST00000575750
  gene symbol: BAIAP2
  hgvsc: ENST00000575750.1:c.131-43T>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573017
  gene symbol: BAIAP2
  hgvsc: ENST00000573017.1:n.166-43T>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458202
  ensembl transcript: ENST00000571530
  gene symbol: BAIAP2
  hgvsc: ENST00000571530.1:c.71-43T>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573894
  gene symbol: BAIAP2
  hgvsc: ENST00000573894.1:n.210-43T>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461736
  ensembl transcript: ENST00000573659
  gene symbol: BAIAP2
  hgvsc: ENST00000573659.1:c.-44-43T>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000459730
  ensembl transcript: ENST00000574804
  gene symbol: BAIAP2
  hgvsc: ENST00000574804.1:c.-44-43T>A
  variant of: http://identifiers.org/hgnc/947
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: T
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum

http://identifiers.org/exac.variant/17-79031639-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79031639
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 79031639
    reference: chr 17
allele count: 1
allele frequency: 9.114773224442176e-6
allele num: 109712
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000570913
  gene symbol: BAIAP2
  hgvsc: ENST00000570913.1:n.235-42C>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458735
  ensembl transcript: ENST00000573677
  gene symbol: BAIAP2
  hgvsc: ENST00000573677.1:c.-44-42C>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000576470
  gene symbol: BAIAP2
  hgvsc: ENST00000576470.1:n.238-42C>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458522
  ensembl transcript: ENST00000575958
  gene symbol: BAIAP2
  hgvsc: ENST00000575958.1:c.-44-42C>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000459730
  ensembl transcript: ENST00000574804
  gene symbol: BAIAP2
  hgvsc: ENST00000574804.1:c.-44-42C>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000316338
  ensembl transcript: ENST00000321300
  gene symbol: BAIAP2
  hgvsc: ENST00000321300.6:c.131-42C>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460131
  ensembl transcript: ENST00000572918
  gene symbol: BAIAP2
  hgvsc: ENST00000572918.1:c.71-42C>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000459787
  ensembl transcript: ENST00000572073
  gene symbol: BAIAP2
  hgvsc: ENST00000572073.1:c.-44-42C>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000401022
  ensembl transcript: ENST00000428708
  gene symbol: BAIAP2
  hgvsc: ENST00000428708.2:c.131-42C>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458494
  ensembl transcript: ENST00000575989
  gene symbol: BAIAP2
  hgvsc: ENST00000575989.1:c.-44-42C>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000413069
  ensembl transcript: ENST00000435091
  gene symbol: BAIAP2
  hgvsc: ENST00000435091.3:c.131-42C>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458202
  ensembl transcript: ENST00000571530
  gene symbol: BAIAP2
  hgvsc: ENST00000571530.1:c.71-42C>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573017
  gene symbol: BAIAP2
  hgvsc: ENST00000573017.1:n.166-42C>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458964
  ensembl transcript: ENST00000575712
  gene symbol: BAIAP2
  hgvsc: ENST00000575712.1:c.131-42C>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460492
  ensembl transcript: ENST00000572329
  gene symbol: BAIAP2
  hgvsc: ENST00000572329.1:c.230-42C>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461144
  ensembl transcript: ENST00000575245
  gene symbol: BAIAP2
  hgvsc: ENST00000575245.1:c.230-42C>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000315685
  ensembl transcript: ENST00000321280
  gene symbol: BAIAP2
  hgvsc: ENST00000321280.7:c.131-42C>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461736
  ensembl transcript: ENST00000573659
  gene symbol: BAIAP2
  hgvsc: ENST00000573659.1:c.-44-42C>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573894
  gene symbol: BAIAP2
  hgvsc: ENST00000573894.1:n.210-42C>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460344
  ensembl transcript: ENST00000575750
  gene symbol: BAIAP2
  hgvsc: ENST00000575750.1:c.131-42C>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000376211
  ensembl transcript: ENST00000392411
  gene symbol: BAIAP2
  hgvsc: ENST00000392411.3:c.-18+22531C>A
  variant of: http://identifiers.org/hgnc/947
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: DP

17-79031641-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79031641
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 79031640
    reference: chr 17
allele count: 1
allele frequency: 9.090413250186354e-6
allele num: 110006
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000401022
  ensembl transcript: ENST00000428708
  gene symbol: BAIAP2
  hgvsc: ENST00000428708.2:c.131-39delT
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458964
  ensembl transcript: ENST00000575712
  gene symbol: BAIAP2
  hgvsc: ENST00000575712.1:c.131-39delT
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000376211
  ensembl transcript: ENST00000392411
  gene symbol: BAIAP2
  hgvsc: ENST00000392411.3:c.-18+22534delT
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000316338
  ensembl transcript: ENST00000321300
  gene symbol: BAIAP2
  hgvsc: ENST00000321300.6:c.131-39delT
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458735
  ensembl transcript: ENST00000573677
  gene symbol: BAIAP2
  hgvsc: ENST00000573677.1:c.-44-39delT
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458494
  ensembl transcript: ENST00000575989
  gene symbol: BAIAP2
  hgvsc: ENST00000575989.1:c.-44-39delT
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000413069
  ensembl transcript: ENST00000435091
  gene symbol: BAIAP2
  hgvsc: ENST00000435091.3:c.131-39delT
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458202
  ensembl transcript: ENST00000571530
  gene symbol: BAIAP2
  hgvsc: ENST00000571530.1:c.71-39delT
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000576470
  gene symbol: BAIAP2
  hgvsc: ENST00000576470.1:n.238-39delT
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458522
  ensembl transcript: ENST00000575958
  gene symbol: BAIAP2
  hgvsc: ENST00000575958.1:c.-44-39delT
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573894
  gene symbol: BAIAP2
  hgvsc: ENST00000573894.1:n.210-39delT
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000459730
  ensembl transcript: ENST00000574804
  gene symbol: BAIAP2
  hgvsc: ENST00000574804.1:c.-44-39delT
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000315685
  ensembl transcript: ENST00000321280
  gene symbol: BAIAP2
  hgvsc: ENST00000321280.7:c.131-39delT
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000459787
  ensembl transcript: ENST00000572073
  gene symbol: BAIAP2
  hgvsc: ENST00000572073.1:c.-44-39delT
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460131
  ensembl transcript: ENST00000572918
  gene symbol: BAIAP2
  hgvsc: ENST00000572918.1:c.71-39delT
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460344
  ensembl transcript: ENST00000575750
  gene symbol: BAIAP2
  hgvsc: ENST00000575750.1:c.131-39delT
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000570913
  gene symbol: BAIAP2
  hgvsc: ENST00000570913.1:n.235-39delT
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460492
  ensembl transcript: ENST00000572329
  gene symbol: BAIAP2
  hgvsc: ENST00000572329.1:c.230-39delT
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573017
  gene symbol: BAIAP2
  hgvsc: ENST00000573017.1:n.166-39delT
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461736
  ensembl transcript: ENST00000573659
  gene symbol: BAIAP2
  hgvsc: ENST00000573659.1:c.-44-39delT
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461144
  ensembl transcript: ENST00000575245
  gene symbol: BAIAP2
  hgvsc: ENST00000575245.1:c.230-39delT
  variant of: http://identifiers.org/hgnc/947
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Other
population: South Asian
reference allele: CT
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD

17-79031643-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79031643
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 79031643
    reference: chr 17
allele count: 1
allele frequency: 9.088760838347299e-6
allele num: 110026
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000576470
  gene symbol: BAIAP2
  hgvsc: ENST00000576470.1:n.238-38C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000315685
  ensembl transcript: ENST00000321280
  gene symbol: BAIAP2
  hgvsc: ENST00000321280.7:c.131-38C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000401022
  ensembl transcript: ENST00000428708
  gene symbol: BAIAP2
  hgvsc: ENST00000428708.2:c.131-38C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460344
  ensembl transcript: ENST00000575750
  gene symbol: BAIAP2
  hgvsc: ENST00000575750.1:c.131-38C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573017
  gene symbol: BAIAP2
  hgvsc: ENST00000573017.1:n.166-38C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000570913
  gene symbol: BAIAP2
  hgvsc: ENST00000570913.1:n.235-38C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458494
  ensembl transcript: ENST00000575989
  gene symbol: BAIAP2
  hgvsc: ENST00000575989.1:c.-44-38C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460492
  ensembl transcript: ENST00000572329
  gene symbol: BAIAP2
  hgvsc: ENST00000572329.1:c.230-38C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460131
  ensembl transcript: ENST00000572918
  gene symbol: BAIAP2
  hgvsc: ENST00000572918.1:c.71-38C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000459787
  ensembl transcript: ENST00000572073
  gene symbol: BAIAP2
  hgvsc: ENST00000572073.1:c.-44-38C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000413069
  ensembl transcript: ENST00000435091
  gene symbol: BAIAP2
  hgvsc: ENST00000435091.3:c.131-38C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461736
  ensembl transcript: ENST00000573659
  gene symbol: BAIAP2
  hgvsc: ENST00000573659.1:c.-44-38C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000459730
  ensembl transcript: ENST00000574804
  gene symbol: BAIAP2
  hgvsc: ENST00000574804.1:c.-44-38C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458522
  ensembl transcript: ENST00000575958
  gene symbol: BAIAP2
  hgvsc: ENST00000575958.1:c.-44-38C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461144
  ensembl transcript: ENST00000575245
  gene symbol: BAIAP2
  hgvsc: ENST00000575245.1:c.230-38C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000316338
  ensembl transcript: ENST00000321300
  gene symbol: BAIAP2
  hgvsc: ENST00000321300.6:c.131-38C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458202
  ensembl transcript: ENST00000571530
  gene symbol: BAIAP2
  hgvsc: ENST00000571530.1:c.71-38C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573894
  gene symbol: BAIAP2
  hgvsc: ENST00000573894.1:n.210-38C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458735
  ensembl transcript: ENST00000573677
  gene symbol: BAIAP2
  hgvsc: ENST00000573677.1:c.-44-38C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000376211
  ensembl transcript: ENST00000392411
  gene symbol: BAIAP2
  hgvsc: ENST00000392411.3:c.-18+22535C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458964
  ensembl transcript: ENST00000575712
  gene symbol: BAIAP2
  hgvsc: ENST00000575712.1:c.131-38C>T
  variant of: http://identifiers.org/hgnc/947
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ

17-79031644-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79031644
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 79031644
    reference: chr 17
allele count: 7
allele frequency: 6.330602130699803e-5
allele num: 110574
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000401022
  ensembl transcript: ENST00000428708
  gene symbol: BAIAP2
  hgvsc: ENST00000428708.2:c.131-37G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000316338
  ensembl transcript: ENST00000321300
  gene symbol: BAIAP2
  hgvsc: ENST00000321300.6:c.131-37G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458494
  ensembl transcript: ENST00000575989
  gene symbol: BAIAP2
  hgvsc: ENST00000575989.1:c.-44-37G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458202
  ensembl transcript: ENST00000571530
  gene symbol: BAIAP2
  hgvsc: ENST00000571530.1:c.71-37G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000413069
  ensembl transcript: ENST00000435091
  gene symbol: BAIAP2
  hgvsc: ENST00000435091.3:c.131-37G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461144
  ensembl transcript: ENST00000575245
  gene symbol: BAIAP2
  hgvsc: ENST00000575245.1:c.230-37G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458964
  ensembl transcript: ENST00000575712
  gene symbol: BAIAP2
  hgvsc: ENST00000575712.1:c.131-37G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460131
  ensembl transcript: ENST00000572918
  gene symbol: BAIAP2
  hgvsc: ENST00000572918.1:c.71-37G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573017
  gene symbol: BAIAP2
  hgvsc: ENST00000573017.1:n.166-37G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000576470
  gene symbol: BAIAP2
  hgvsc: ENST00000576470.1:n.238-37G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000315685
  ensembl transcript: ENST00000321280
  gene symbol: BAIAP2
  hgvsc: ENST00000321280.7:c.131-37G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460344
  ensembl transcript: ENST00000575750
  gene symbol: BAIAP2
  hgvsc: ENST00000575750.1:c.131-37G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000459787
  ensembl transcript: ENST00000572073
  gene symbol: BAIAP2
  hgvsc: ENST00000572073.1:c.-44-37G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573894
  gene symbol: BAIAP2
  hgvsc: ENST00000573894.1:n.210-37G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460492
  ensembl transcript: ENST00000572329
  gene symbol: BAIAP2
  hgvsc: ENST00000572329.1:c.230-37G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000459730
  ensembl transcript: ENST00000574804
  gene symbol: BAIAP2
  hgvsc: ENST00000574804.1:c.-44-37G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461736
  ensembl transcript: ENST00000573659
  gene symbol: BAIAP2
  hgvsc: ENST00000573659.1:c.-44-37G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458522
  ensembl transcript: ENST00000575958
  gene symbol: BAIAP2
  hgvsc: ENST00000575958.1:c.-44-37G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000376211
  ensembl transcript: ENST00000392411
  gene symbol: BAIAP2
  hgvsc: ENST00000392411.3:c.-18+22536G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458735
  ensembl transcript: ENST00000573677
  gene symbol: BAIAP2
  hgvsc: ENST00000573677.1:c.-44-37G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000570913
  gene symbol: BAIAP2
  hgvsc: ENST00000570913.1:n.235-37G>A
  variant of: http://identifiers.org/hgnc/947
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Other
population: Latino
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

17-79031644-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79031644
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 79031644
    reference: chr 17
allele count: 1
allele frequency: 9.043717329571148e-6
allele num: 110574
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000570913
  gene symbol: BAIAP2
  hgvsc: ENST00000570913.1:n.235-37G>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000459730
  ensembl transcript: ENST00000574804
  gene symbol: BAIAP2
  hgvsc: ENST00000574804.1:c.-44-37G>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458522
  ensembl transcript: ENST00000575958
  gene symbol: BAIAP2
  hgvsc: ENST00000575958.1:c.-44-37G>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000316338
  ensembl transcript: ENST00000321300
  gene symbol: BAIAP2
  hgvsc: ENST00000321300.6:c.131-37G>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000401022
  ensembl transcript: ENST00000428708
  gene symbol: BAIAP2
  hgvsc: ENST00000428708.2:c.131-37G>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000376211
  ensembl transcript: ENST00000392411
  gene symbol: BAIAP2
  hgvsc: ENST00000392411.3:c.-18+22536G>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460131
  ensembl transcript: ENST00000572918
  gene symbol: BAIAP2
  hgvsc: ENST00000572918.1:c.71-37G>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460492
  ensembl transcript: ENST00000572329
  gene symbol: BAIAP2
  hgvsc: ENST00000572329.1:c.230-37G>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573894
  gene symbol: BAIAP2
  hgvsc: ENST00000573894.1:n.210-37G>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458735
  ensembl transcript: ENST00000573677
  gene symbol: BAIAP2
  hgvsc: ENST00000573677.1:c.-44-37G>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458494
  ensembl transcript: ENST00000575989
  gene symbol: BAIAP2
  hgvsc: ENST00000575989.1:c.-44-37G>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573017
  gene symbol: BAIAP2
  hgvsc: ENST00000573017.1:n.166-37G>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461144
  ensembl transcript: ENST00000575245
  gene symbol: BAIAP2
  hgvsc: ENST00000575245.1:c.230-37G>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458964
  ensembl transcript: ENST00000575712
  gene symbol: BAIAP2
  hgvsc: ENST00000575712.1:c.131-37G>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461736
  ensembl transcript: ENST00000573659
  gene symbol: BAIAP2
  hgvsc: ENST00000573659.1:c.-44-37G>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000576470
  gene symbol: BAIAP2
  hgvsc: ENST00000576470.1:n.238-37G>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000413069
  ensembl transcript: ENST00000435091
  gene symbol: BAIAP2
  hgvsc: ENST00000435091.3:c.131-37G>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460344
  ensembl transcript: ENST00000575750
  gene symbol: BAIAP2
  hgvsc: ENST00000575750.1:c.131-37G>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000459787
  ensembl transcript: ENST00000572073
  gene symbol: BAIAP2
  hgvsc: ENST00000572073.1:c.-44-37G>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000315685
  ensembl transcript: ENST00000321280
  gene symbol: BAIAP2
  hgvsc: ENST00000321280.7:c.131-37G>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458202
  ensembl transcript: ENST00000571530
  gene symbol: BAIAP2
  hgvsc: ENST00000571530.1:c.71-37G>T
  variant of: http://identifiers.org/hgnc/947
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS

17-79031645-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79031645
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 79031645
    reference: chr 17
allele count: 1
allele frequency: 9.014856483484784e-6
allele num: 110928
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458494
  ensembl transcript: ENST00000575989
  gene symbol: BAIAP2
  hgvsc: ENST00000575989.1:c.-44-36T>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461144
  ensembl transcript: ENST00000575245
  gene symbol: BAIAP2
  hgvsc: ENST00000575245.1:c.230-36T>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000315685
  ensembl transcript: ENST00000321280
  gene symbol: BAIAP2
  hgvsc: ENST00000321280.7:c.131-36T>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000459787
  ensembl transcript: ENST00000572073
  gene symbol: BAIAP2
  hgvsc: ENST00000572073.1:c.-44-36T>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000413069
  ensembl transcript: ENST00000435091
  gene symbol: BAIAP2
  hgvsc: ENST00000435091.3:c.131-36T>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000576470
  gene symbol: BAIAP2
  hgvsc: ENST00000576470.1:n.238-36T>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458964
  ensembl transcript: ENST00000575712
  gene symbol: BAIAP2
  hgvsc: ENST00000575712.1:c.131-36T>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460492
  ensembl transcript: ENST00000572329
  gene symbol: BAIAP2
  hgvsc: ENST00000572329.1:c.230-36T>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573894
  gene symbol: BAIAP2
  hgvsc: ENST00000573894.1:n.210-36T>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000401022
  ensembl transcript: ENST00000428708
  gene symbol: BAIAP2
  hgvsc: ENST00000428708.2:c.131-36T>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000570913
  gene symbol: BAIAP2
  hgvsc: ENST00000570913.1:n.235-36T>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460344
  ensembl transcript: ENST00000575750
  gene symbol: BAIAP2
  hgvsc: ENST00000575750.1:c.131-36T>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000376211
  ensembl transcript: ENST00000392411
  gene symbol: BAIAP2
  hgvsc: ENST00000392411.3:c.-18+22537T>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573017
  gene symbol: BAIAP2
  hgvsc: ENST00000573017.1:n.166-36T>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460131
  ensembl transcript: ENST00000572918
  gene symbol: BAIAP2
  hgvsc: ENST00000572918.1:c.71-36T>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461736
  ensembl transcript: ENST00000573659
  gene symbol: BAIAP2
  hgvsc: ENST00000573659.1:c.-44-36T>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000316338
  ensembl transcript: ENST00000321300
  gene symbol: BAIAP2
  hgvsc: ENST00000321300.6:c.131-36T>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458202
  ensembl transcript: ENST00000571530
  gene symbol: BAIAP2
  hgvsc: ENST00000571530.1:c.71-36T>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000459730
  ensembl transcript: ENST00000574804
  gene symbol: BAIAP2
  hgvsc: ENST00000574804.1:c.-44-36T>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458522
  ensembl transcript: ENST00000575958
  gene symbol: BAIAP2
  hgvsc: ENST00000575958.1:c.-44-36T>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458735
  ensembl transcript: ENST00000573677
  gene symbol: BAIAP2
  hgvsc: ENST00000573677.1:c.-44-36T>A
  variant of: http://identifiers.org/hgnc/947
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: DP

17-79031645-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79031645
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 79031645
    reference: chr 17
allele count: 1
allele frequency: 9.014856483484784e-6
allele num: 110928
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000459787
  ensembl transcript: ENST00000572073
  gene symbol: BAIAP2
  hgvsc: ENST00000572073.1:c.-44-36T>G
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000401022
  ensembl transcript: ENST00000428708
  gene symbol: BAIAP2
  hgvsc: ENST00000428708.2:c.131-36T>G
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461736
  ensembl transcript: ENST00000573659
  gene symbol: BAIAP2
  hgvsc: ENST00000573659.1:c.-44-36T>G
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458522
  ensembl transcript: ENST00000575958
  gene symbol: BAIAP2
  hgvsc: ENST00000575958.1:c.-44-36T>G
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000459730
  ensembl transcript: ENST00000574804
  gene symbol: BAIAP2
  hgvsc: ENST00000574804.1:c.-44-36T>G
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460492
  ensembl transcript: ENST00000572329
  gene symbol: BAIAP2
  hgvsc: ENST00000572329.1:c.230-36T>G
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461144
  ensembl transcript: ENST00000575245
  gene symbol: BAIAP2
  hgvsc: ENST00000575245.1:c.230-36T>G
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573017
  gene symbol: BAIAP2
  hgvsc: ENST00000573017.1:n.166-36T>G
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458964
  ensembl transcript: ENST00000575712
  gene symbol: BAIAP2
  hgvsc: ENST00000575712.1:c.131-36T>G
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573894
  gene symbol: BAIAP2
  hgvsc: ENST00000573894.1:n.210-36T>G
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000315685
  ensembl transcript: ENST00000321280
  gene symbol: BAIAP2
  hgvsc: ENST00000321280.7:c.131-36T>G
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000576470
  gene symbol: BAIAP2
  hgvsc: ENST00000576470.1:n.238-36T>G
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000376211
  ensembl transcript: ENST00000392411
  gene symbol: BAIAP2
  hgvsc: ENST00000392411.3:c.-18+22537T>G
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000316338
  ensembl transcript: ENST00000321300
  gene symbol: BAIAP2
  hgvsc: ENST00000321300.6:c.131-36T>G
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460344
  ensembl transcript: ENST00000575750
  gene symbol: BAIAP2
  hgvsc: ENST00000575750.1:c.131-36T>G
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000413069
  ensembl transcript: ENST00000435091
  gene symbol: BAIAP2
  hgvsc: ENST00000435091.3:c.131-36T>G
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460131
  ensembl transcript: ENST00000572918
  gene symbol: BAIAP2
  hgvsc: ENST00000572918.1:c.71-36T>G
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458735
  ensembl transcript: ENST00000573677
  gene symbol: BAIAP2
  hgvsc: ENST00000573677.1:c.-44-36T>G
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458494
  ensembl transcript: ENST00000575989
  gene symbol: BAIAP2
  hgvsc: ENST00000575989.1:c.-44-36T>G
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458202
  ensembl transcript: ENST00000571530
  gene symbol: BAIAP2
  hgvsc: ENST00000571530.1:c.71-36T>G
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000570913
  gene symbol: BAIAP2
  hgvsc: ENST00000570913.1:n.235-36T>G
  variant of: http://identifiers.org/hgnc/947
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: African
reference allele: T
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

17-79031659-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79031659
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 79031659
    reference: chr 17
allele count: 1
allele frequency: 8.7470697316399e-6
allele num: 114324
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461736
  ensembl transcript: ENST00000573659
  gene symbol: BAIAP2
  hgvsc: ENST00000573659.1:c.-44-22G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000576470
  gene symbol: BAIAP2
  hgvsc: ENST00000576470.1:n.238-22G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460492
  ensembl transcript: ENST00000572329
  gene symbol: BAIAP2
  hgvsc: ENST00000572329.1:c.230-22G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000459730
  ensembl transcript: ENST00000574804
  gene symbol: BAIAP2
  hgvsc: ENST00000574804.1:c.-44-22G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458494
  ensembl transcript: ENST00000575989
  gene symbol: BAIAP2
  hgvsc: ENST00000575989.1:c.-44-22G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460344
  ensembl transcript: ENST00000575750
  gene symbol: BAIAP2
  hgvsc: ENST00000575750.1:c.131-22G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461144
  ensembl transcript: ENST00000575245
  gene symbol: BAIAP2
  hgvsc: ENST00000575245.1:c.230-22G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000413069
  ensembl transcript: ENST00000435091
  gene symbol: BAIAP2
  hgvsc: ENST00000435091.3:c.131-22G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458964
  ensembl transcript: ENST00000575712
  gene symbol: BAIAP2
  hgvsc: ENST00000575712.1:c.131-22G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000401022
  ensembl transcript: ENST00000428708
  gene symbol: BAIAP2
  hgvsc: ENST00000428708.2:c.131-22G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458735
  ensembl transcript: ENST00000573677
  gene symbol: BAIAP2
  hgvsc: ENST00000573677.1:c.-44-22G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458202
  ensembl transcript: ENST00000571530
  gene symbol: BAIAP2
  hgvsc: ENST00000571530.1:c.71-22G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000570913
  gene symbol: BAIAP2
  hgvsc: ENST00000570913.1:n.235-22G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000376211
  ensembl transcript: ENST00000392411
  gene symbol: BAIAP2
  hgvsc: ENST00000392411.3:c.-18+22551G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573017
  gene symbol: BAIAP2
  hgvsc: ENST00000573017.1:n.166-22G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460131
  ensembl transcript: ENST00000572918
  gene symbol: BAIAP2
  hgvsc: ENST00000572918.1:c.71-22G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458522
  ensembl transcript: ENST00000575958
  gene symbol: BAIAP2
  hgvsc: ENST00000575958.1:c.-44-22G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573894
  gene symbol: BAIAP2
  hgvsc: ENST00000573894.1:n.210-22G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000315685
  ensembl transcript: ENST00000321280
  gene symbol: BAIAP2
  hgvsc: ENST00000321280.7:c.131-22G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000459787
  ensembl transcript: ENST00000572073
  gene symbol: BAIAP2
  hgvsc: ENST00000572073.1:c.-44-22G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000316338
  ensembl transcript: ENST00000321300
  gene symbol: BAIAP2
  hgvsc: ENST00000321300.6:c.131-22G>A
  variant of: http://identifiers.org/hgnc/947
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: QD

17-79031662-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79031662
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 79031662
    reference: chr 17
allele count: 1
allele frequency: 8.682967490969713e-6
allele num: 115168
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461736
  ensembl transcript: ENST00000573659
  gene symbol: BAIAP2
  hgvsc: ENST00000573659.1:c.-44-19C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460344
  ensembl transcript: ENST00000575750
  gene symbol: BAIAP2
  hgvsc: ENST00000575750.1:c.131-19C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000401022
  ensembl transcript: ENST00000428708
  gene symbol: BAIAP2
  hgvsc: ENST00000428708.2:c.131-19C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000570913
  gene symbol: BAIAP2
  hgvsc: ENST00000570913.1:n.235-19C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458494
  ensembl transcript: ENST00000575989
  gene symbol: BAIAP2
  hgvsc: ENST00000575989.1:c.-44-19C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000413069
  ensembl transcript: ENST00000435091
  gene symbol: BAIAP2
  hgvsc: ENST00000435091.3:c.131-19C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000459787
  ensembl transcript: ENST00000572073
  gene symbol: BAIAP2
  hgvsc: ENST00000572073.1:c.-44-19C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458964
  ensembl transcript: ENST00000575712
  gene symbol: BAIAP2
  hgvsc: ENST00000575712.1:c.131-19C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460131
  ensembl transcript: ENST00000572918
  gene symbol: BAIAP2
  hgvsc: ENST00000572918.1:c.71-19C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000315685
  ensembl transcript: ENST00000321280
  gene symbol: BAIAP2
  hgvsc: ENST00000321280.7:c.131-19C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573894
  gene symbol: BAIAP2
  hgvsc: ENST00000573894.1:n.210-19C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000316338
  ensembl transcript: ENST00000321300
  gene symbol: BAIAP2
  hgvsc: ENST00000321300.6:c.131-19C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458202
  ensembl transcript: ENST00000571530
  gene symbol: BAIAP2
  hgvsc: ENST00000571530.1:c.71-19C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458522
  ensembl transcript: ENST00000575958
  gene symbol: BAIAP2
  hgvsc: ENST00000575958.1:c.-44-19C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460492
  ensembl transcript: ENST00000572329
  gene symbol: BAIAP2
  hgvsc: ENST00000572329.1:c.230-19C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000576470
  gene symbol: BAIAP2
  hgvsc: ENST00000576470.1:n.238-19C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000459730
  ensembl transcript: ENST00000574804
  gene symbol: BAIAP2
  hgvsc: ENST00000574804.1:c.-44-19C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000376211
  ensembl transcript: ENST00000392411
  gene symbol: BAIAP2
  hgvsc: ENST00000392411.3:c.-18+22554C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461144
  ensembl transcript: ENST00000575245
  gene symbol: BAIAP2
  hgvsc: ENST00000575245.1:c.230-19C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573017
  gene symbol: BAIAP2
  hgvsc: ENST00000573017.1:n.166-19C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458735
  ensembl transcript: ENST00000573677
  gene symbol: BAIAP2
  hgvsc: ENST00000573677.1:c.-44-19C>T
  variant of: http://identifiers.org/hgnc/947
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ

17-79031664-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79031664
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 79031664
    reference: chr 17
allele count: 2
allele frequency: 1.729804532087874e-5
allele num: 115620
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000459730
  ensembl transcript: ENST00000574804
  gene symbol: BAIAP2
  hgvsc: ENST00000574804.1:c.-44-17C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461144
  ensembl transcript: ENST00000575245
  gene symbol: BAIAP2
  hgvsc: ENST00000575245.1:c.230-17C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460492
  ensembl transcript: ENST00000572329
  gene symbol: BAIAP2
  hgvsc: ENST00000572329.1:c.230-17C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000576470
  gene symbol: BAIAP2
  hgvsc: ENST00000576470.1:n.238-17C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458964
  ensembl transcript: ENST00000575712
  gene symbol: BAIAP2
  hgvsc: ENST00000575712.1:c.131-17C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460131
  ensembl transcript: ENST00000572918
  gene symbol: BAIAP2
  hgvsc: ENST00000572918.1:c.71-17C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000376211
  ensembl transcript: ENST00000392411
  gene symbol: BAIAP2
  hgvsc: ENST00000392411.3:c.-18+22556C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573894
  gene symbol: BAIAP2
  hgvsc: ENST00000573894.1:n.210-17C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458202
  ensembl transcript: ENST00000571530
  gene symbol: BAIAP2
  hgvsc: ENST00000571530.1:c.71-17C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000315685
  ensembl transcript: ENST00000321280
  gene symbol: BAIAP2
  hgvsc: ENST00000321280.7:c.131-17C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000413069
  ensembl transcript: ENST00000435091
  gene symbol: BAIAP2
  hgvsc: ENST00000435091.3:c.131-17C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000401022
  ensembl transcript: ENST00000428708
  gene symbol: BAIAP2
  hgvsc: ENST00000428708.2:c.131-17C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000459787
  ensembl transcript: ENST00000572073
  gene symbol: BAIAP2
  hgvsc: ENST00000572073.1:c.-44-17C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461736
  ensembl transcript: ENST00000573659
  gene symbol: BAIAP2
  hgvsc: ENST00000573659.1:c.-44-17C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460344
  ensembl transcript: ENST00000575750
  gene symbol: BAIAP2
  hgvsc: ENST00000575750.1:c.131-17C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000570913
  gene symbol: BAIAP2
  hgvsc: ENST00000570913.1:n.235-17C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573017
  gene symbol: BAIAP2
  hgvsc: ENST00000573017.1:n.166-17C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458522
  ensembl transcript: ENST00000575958
  gene symbol: BAIAP2
  hgvsc: ENST00000575958.1:c.-44-17C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458735
  ensembl transcript: ENST00000573677
  gene symbol: BAIAP2
  hgvsc: ENST00000573677.1:c.-44-17C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458494
  ensembl transcript: ENST00000575989
  gene symbol: BAIAP2
  hgvsc: ENST00000575989.1:c.-44-17C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000316338
  ensembl transcript: ENST00000321300
  gene symbol: BAIAP2
  hgvsc: ENST00000321300.6:c.131-17C>T
  variant of: http://identifiers.org/hgnc/947
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum

17-79031665-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79031665
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 79031665
    reference: chr 17
allele count: 2
allele frequency: 1.725238514224592e-5
allele num: 115926
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458494
  ensembl transcript: ENST00000575989
  gene symbol: BAIAP2
  hgvsc: ENST00000575989.1:c.-44-16T>C
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458964
  ensembl transcript: ENST00000575712
  gene symbol: BAIAP2
  hgvsc: ENST00000575712.1:c.131-16T>C
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460492
  ensembl transcript: ENST00000572329
  gene symbol: BAIAP2
  hgvsc: ENST00000572329.1:c.230-16T>C
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000413069
  ensembl transcript: ENST00000435091
  gene symbol: BAIAP2
  hgvsc: ENST00000435091.3:c.131-16T>C
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461144
  ensembl transcript: ENST00000575245
  gene symbol: BAIAP2
  hgvsc: ENST00000575245.1:c.230-16T>C
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000376211
  ensembl transcript: ENST00000392411
  gene symbol: BAIAP2
  hgvsc: ENST00000392411.3:c.-18+22557T>C
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000401022
  ensembl transcript: ENST00000428708
  gene symbol: BAIAP2
  hgvsc: ENST00000428708.2:c.131-16T>C
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000576470
  gene symbol: BAIAP2
  hgvsc: ENST00000576470.1:n.238-16T>C
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573017
  gene symbol: BAIAP2
  hgvsc: ENST00000573017.1:n.166-16T>C
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000459730
  ensembl transcript: ENST00000574804
  gene symbol: BAIAP2
  hgvsc: ENST00000574804.1:c.-44-16T>C
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460131
  ensembl transcript: ENST00000572918
  gene symbol: BAIAP2
  hgvsc: ENST00000572918.1:c.71-16T>C
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000316338
  ensembl transcript: ENST00000321300
  gene symbol: BAIAP2
  hgvsc: ENST00000321300.6:c.131-16T>C
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460344
  ensembl transcript: ENST00000575750
  gene symbol: BAIAP2
  hgvsc: ENST00000575750.1:c.131-16T>C
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458522
  ensembl transcript: ENST00000575958
  gene symbol: BAIAP2
  hgvsc: ENST00000575958.1:c.-44-16T>C
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000459787
  ensembl transcript: ENST00000572073
  gene symbol: BAIAP2
  hgvsc: ENST00000572073.1:c.-44-16T>C
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458735
  ensembl transcript: ENST00000573677
  gene symbol: BAIAP2
  hgvsc: ENST00000573677.1:c.-44-16T>C
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000570913
  gene symbol: BAIAP2
  hgvsc: ENST00000570913.1:n.235-16T>C
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461736
  ensembl transcript: ENST00000573659
  gene symbol: BAIAP2
  hgvsc: ENST00000573659.1:c.-44-16T>C
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000315685
  ensembl transcript: ENST00000321280
  gene symbol: BAIAP2
  hgvsc: ENST00000321280.7:c.131-16T>C
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573894
  gene symbol: BAIAP2
  hgvsc: ENST00000573894.1:n.210-16T>C
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458202
  ensembl transcript: ENST00000571530
  gene symbol: BAIAP2
  hgvsc: ENST00000571530.1:c.71-16T>C
  variant of: http://identifiers.org/hgnc/947
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: African
reference allele: T
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum

17-79031666-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79031666
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 79031666
    reference: chr 17
allele count: 1
allele frequency: 8.602150537634409e-6
allele num: 116250
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573894
  gene symbol: BAIAP2
  hgvsc: ENST00000573894.1:n.210-15T>C
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000401022
  ensembl transcript: ENST00000428708
  gene symbol: BAIAP2
  hgvsc: ENST00000428708.2:c.131-15T>C
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458735
  ensembl transcript: ENST00000573677
  gene symbol: BAIAP2
  hgvsc: ENST00000573677.1:c.-44-15T>C
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000413069
  ensembl transcript: ENST00000435091
  gene symbol: BAIAP2
  hgvsc: ENST00000435091.3:c.131-15T>C
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461736
  ensembl transcript: ENST00000573659
  gene symbol: BAIAP2
  hgvsc: ENST00000573659.1:c.-44-15T>C
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458522
  ensembl transcript: ENST00000575958
  gene symbol: BAIAP2
  hgvsc: ENST00000575958.1:c.-44-15T>C
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460492
  ensembl transcript: ENST00000572329
  gene symbol: BAIAP2
  hgvsc: ENST00000572329.1:c.230-15T>C
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458494
  ensembl transcript: ENST00000575989
  gene symbol: BAIAP2
  hgvsc: ENST00000575989.1:c.-44-15T>C
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460344
  ensembl transcript: ENST00000575750
  gene symbol: BAIAP2
  hgvsc: ENST00000575750.1:c.131-15T>C
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573017
  gene symbol: BAIAP2
  hgvsc: ENST00000573017.1:n.166-15T>C
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000576470
  gene symbol: BAIAP2
  hgvsc: ENST00000576470.1:n.238-15T>C
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460131
  ensembl transcript: ENST00000572918
  gene symbol: BAIAP2
  hgvsc: ENST00000572918.1:c.71-15T>C
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461144
  ensembl transcript: ENST00000575245
  gene symbol: BAIAP2
  hgvsc: ENST00000575245.1:c.230-15T>C
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000376211
  ensembl transcript: ENST00000392411
  gene symbol: BAIAP2
  hgvsc: ENST00000392411.3:c.-18+22558T>C
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000316338
  ensembl transcript: ENST00000321300
  gene symbol: BAIAP2
  hgvsc: ENST00000321300.6:c.131-15T>C
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000570913
  gene symbol: BAIAP2
  hgvsc: ENST00000570913.1:n.235-15T>C
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458964
  ensembl transcript: ENST00000575712
  gene symbol: BAIAP2
  hgvsc: ENST00000575712.1:c.131-15T>C
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458202
  ensembl transcript: ENST00000571530
  gene symbol: BAIAP2
  hgvsc: ENST00000571530.1:c.71-15T>C
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000315685
  ensembl transcript: ENST00000321280
  gene symbol: BAIAP2
  hgvsc: ENST00000321280.7:c.131-15T>C
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000459787
  ensembl transcript: ENST00000572073
  gene symbol: BAIAP2
  hgvsc: ENST00000572073.1:c.-44-15T>C
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000459730
  ensembl transcript: ENST00000574804
  gene symbol: BAIAP2
  hgvsc: ENST00000574804.1:c.-44-15T>C
  variant of: http://identifiers.org/hgnc/947
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: DP

17-79031674-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79031674
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 79031674
    reference: chr 17
allele count: 1
allele frequency: 8.4870911343846e-6
allele num: 117826
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000459730
  ensembl transcript: ENST00000574804
  gene symbol: BAIAP2
  hgvsc: ENST00000574804.1:c.-44-7C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000315685
  ensembl transcript: ENST00000321280
  gene symbol: BAIAP2
  hgvsc: ENST00000321280.7:c.131-7C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000459787
  ensembl transcript: ENST00000572073
  gene symbol: BAIAP2
  hgvsc: ENST00000572073.1:c.-44-7C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458202
  ensembl transcript: ENST00000571530
  gene symbol: BAIAP2
  hgvsc: ENST00000571530.1:c.71-7C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573894
  gene symbol: BAIAP2
  hgvsc: ENST00000573894.1:n.210-7C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000413069
  ensembl transcript: ENST00000435091
  gene symbol: BAIAP2
  hgvsc: ENST00000435091.3:c.131-7C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000576470
  gene symbol: BAIAP2
  hgvsc: ENST00000576470.1:n.238-7C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000316338
  ensembl transcript: ENST00000321300
  gene symbol: BAIAP2
  hgvsc: ENST00000321300.6:c.131-7C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460492
  ensembl transcript: ENST00000572329
  gene symbol: BAIAP2
  hgvsc: ENST00000572329.1:c.230-7C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461736
  ensembl transcript: ENST00000573659
  gene symbol: BAIAP2
  hgvsc: ENST00000573659.1:c.-44-7C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458494
  ensembl transcript: ENST00000575989
  gene symbol: BAIAP2
  hgvsc: ENST00000575989.1:c.-44-7C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573017
  gene symbol: BAIAP2
  hgvsc: ENST00000573017.1:n.166-7C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461144
  ensembl transcript: ENST00000575245
  gene symbol: BAIAP2
  hgvsc: ENST00000575245.1:c.230-7C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000401022
  ensembl transcript: ENST00000428708
  gene symbol: BAIAP2
  hgvsc: ENST00000428708.2:c.131-7C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460344
  ensembl transcript: ENST00000575750
  gene symbol: BAIAP2
  hgvsc: ENST00000575750.1:c.131-7C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460131
  ensembl transcript: ENST00000572918
  gene symbol: BAIAP2
  hgvsc: ENST00000572918.1:c.71-7C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458735
  ensembl transcript: ENST00000573677
  gene symbol: BAIAP2
  hgvsc: ENST00000573677.1:c.-44-7C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458964
  ensembl transcript: ENST00000575712
  gene symbol: BAIAP2
  hgvsc: ENST00000575712.1:c.131-7C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458522
  ensembl transcript: ENST00000575958
  gene symbol: BAIAP2
  hgvsc: ENST00000575958.1:c.-44-7C>T
  variant of: http://identifiers.org/hgnc/947
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: c.131-7C>T
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ

17-79031676-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79031676
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 79031676
    reference: chr 17
allele count: 7
allele frequency: 5.924972914409534e-5
allele num: 118144
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458202
  ensembl transcript: ENST00000571530
  gene symbol: BAIAP2
  hgvsc: ENST00000571530.1:c.71-5C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000401022
  ensembl transcript: ENST00000428708
  gene symbol: BAIAP2
  hgvsc: ENST00000428708.2:c.131-5C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000570913
  gene symbol: BAIAP2
  hgvsc: ENST00000570913.1:n.235-5C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461144
  ensembl transcript: ENST00000575245
  gene symbol: BAIAP2
  hgvsc: ENST00000575245.1:c.230-5C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573894
  gene symbol: BAIAP2
  hgvsc: ENST00000573894.1:n.210-5C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000576470
  gene symbol: BAIAP2
  hgvsc: ENST00000576470.1:n.238-5C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461736
  ensembl transcript: ENST00000573659
  gene symbol: BAIAP2
  hgvsc: ENST00000573659.1:c.-44-5C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000459787
  ensembl transcript: ENST00000572073
  gene symbol: BAIAP2
  hgvsc: ENST00000572073.1:c.-44-5C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573017
  gene symbol: BAIAP2
  hgvsc: ENST00000573017.1:n.166-5C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460344
  ensembl transcript: ENST00000575750
  gene symbol: BAIAP2
  hgvsc: ENST00000575750.1:c.131-5C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000316338
  ensembl transcript: ENST00000321300
  gene symbol: BAIAP2
  hgvsc: ENST00000321300.6:c.131-5C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458522
  ensembl transcript: ENST00000575958
  gene symbol: BAIAP2
  hgvsc: ENST00000575958.1:c.-44-5C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458964
  ensembl transcript: ENST00000575712
  gene symbol: BAIAP2
  hgvsc: ENST00000575712.1:c.131-5C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460131
  ensembl transcript: ENST00000572918
  gene symbol: BAIAP2
  hgvsc: ENST00000572918.1:c.71-5C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000413069
  ensembl transcript: ENST00000435091
  gene symbol: BAIAP2
  hgvsc: ENST00000435091.3:c.131-5C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458735
  ensembl transcript: ENST00000573677
  gene symbol: BAIAP2
  hgvsc: ENST00000573677.1:c.-44-5C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460492
  ensembl transcript: ENST00000572329
  gene symbol: BAIAP2
  hgvsc: ENST00000572329.1:c.230-5C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458494
  ensembl transcript: ENST00000575989
  gene symbol: BAIAP2
  hgvsc: ENST00000575989.1:c.-44-5C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000376211
  ensembl transcript: ENST00000392411
  gene symbol: BAIAP2
  hgvsc: ENST00000392411.3:c.-18+22568C>T
  variant of: http://identifiers.org/hgnc/947
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: c.131-5C>T
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

http://identifiers.org/exac.variant/17-79031687-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79031687
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 79031687
    reference: chr 17
allele count: 2
allele frequency: 1.681152598221341e-5
allele num: 118966
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000459787
  ensembl transcript: ENST00000572073
  gene symbol: BAIAP2
  hgvsc: ENST00000572073.1:c.-38C>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000316338
  ensembl transcript: ENST00000321300
  gene symbol: BAIAP2
  hgvsc: ENST00000321300.6:c.137C>A
  hgvsp: ENSP00000316338.6:p.Thr46Lys
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458964
  ensembl transcript: ENST00000575712
  gene symbol: BAIAP2
  hgvsc: ENST00000575712.1:c.137C>A
  hgvsp: ENSP00000458964.1:p.Thr46Lys
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000570913
  gene symbol: BAIAP2
  hgvsc: ENST00000570913.1:n.241C>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458494
  ensembl transcript: ENST00000575989
  gene symbol: BAIAP2
  hgvsc: ENST00000575989.1:c.-38C>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460344
  ensembl transcript: ENST00000575750
  gene symbol: BAIAP2
  hgvsc: ENST00000575750.1:c.137C>A
  hgvsp: ENSP00000460344.1:p.Thr46Lys
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458735
  ensembl transcript: ENST00000573677
  gene symbol: BAIAP2
  hgvsc: ENST00000573677.1:c.-38C>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461144
  ensembl transcript: ENST00000575245
  gene symbol: BAIAP2
  hgvsc: ENST00000575245.1:c.236C>A
  hgvsp: ENSP00000461144.1:p.Thr79Lys
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000413069
  ensembl transcript: ENST00000435091
  gene symbol: BAIAP2
  hgvsc: ENST00000435091.3:c.137C>A
  hgvsp: ENSP00000413069.3:p.Thr46Lys
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000401022
  ensembl transcript: ENST00000428708
  gene symbol: BAIAP2
  hgvsc: ENST00000428708.2:c.137C>A
  hgvsp: ENSP00000401022.2:p.Thr46Lys
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000576470
  gene symbol: BAIAP2
  hgvsc: ENST00000576470.1:n.244C>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000315685
  ensembl transcript: ENST00000321280
  gene symbol: BAIAP2
  hgvsc: ENST00000321280.7:c.137C>A
  hgvsp: ENSP00000315685.7:p.Thr46Lys
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000459730
  ensembl transcript: ENST00000574804
  gene symbol: BAIAP2
  hgvsc: ENST00000574804.1:c.-38C>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573894
  gene symbol: BAIAP2
  hgvsc: ENST00000573894.1:n.216C>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460131
  ensembl transcript: ENST00000572918
  gene symbol: BAIAP2
  hgvsc: ENST00000572918.1:c.77C>A
  hgvsp: ENSP00000460131.1:p.Thr26Lys
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461736
  ensembl transcript: ENST00000573659
  gene symbol: BAIAP2
  hgvsc: ENST00000573659.1:c.-38C>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000376211
  ensembl transcript: ENST00000392411
  gene symbol: BAIAP2
  hgvsc: ENST00000392411.3:c.-18+22579C>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458522
  ensembl transcript: ENST00000575958
  gene symbol: BAIAP2
  hgvsc: ENST00000575958.1:c.-38C>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460492
  ensembl transcript: ENST00000572329
  gene symbol: BAIAP2
  hgvsc: ENST00000572329.1:c.236C>A
  hgvsp: ENSP00000460492.1:p.Thr79Lys
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458202
  ensembl transcript: ENST00000571530
  gene symbol: BAIAP2
  hgvsc: ENST00000571530.1:c.77C>A
  hgvsp: ENSP00000458202.1:p.Thr26Lys
  variant of: http://identifiers.org/hgnc/947
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Thr46Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum

17-79031687-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79031687
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 79031687
    reference: chr 17
allele count: 1
allele frequency: 8.405762991106703e-6
allele num: 118966
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573894
  gene symbol: BAIAP2
  hgvsc: ENST00000573894.1:n.216C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000315685
  ensembl transcript: ENST00000321280
  gene symbol: BAIAP2
  hgvsc: ENST00000321280.7:c.137C>T
  hgvsp: ENSP00000315685.7:p.Thr46Met
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000459787
  ensembl transcript: ENST00000572073
  gene symbol: BAIAP2
  hgvsc: ENST00000572073.1:c.-38C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458494
  ensembl transcript: ENST00000575989
  gene symbol: BAIAP2
  hgvsc: ENST00000575989.1:c.-38C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458964
  ensembl transcript: ENST00000575712
  gene symbol: BAIAP2
  hgvsc: ENST00000575712.1:c.137C>T
  hgvsp: ENSP00000458964.1:p.Thr46Met
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000401022
  ensembl transcript: ENST00000428708
  gene symbol: BAIAP2
  hgvsc: ENST00000428708.2:c.137C>T
  hgvsp: ENSP00000401022.2:p.Thr46Met
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461736
  ensembl transcript: ENST00000573659
  gene symbol: BAIAP2
  hgvsc: ENST00000573659.1:c.-38C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460492
  ensembl transcript: ENST00000572329
  gene symbol: BAIAP2
  hgvsc: ENST00000572329.1:c.236C>T
  hgvsp: ENSP00000460492.1:p.Thr79Met
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460344
  ensembl transcript: ENST00000575750
  gene symbol: BAIAP2
  hgvsc: ENST00000575750.1:c.137C>T
  hgvsp: ENSP00000460344.1:p.Thr46Met
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458202
  ensembl transcript: ENST00000571530
  gene symbol: BAIAP2
  hgvsc: ENST00000571530.1:c.77C>T
  hgvsp: ENSP00000458202.1:p.Thr26Met
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000413069
  ensembl transcript: ENST00000435091
  gene symbol: BAIAP2
  hgvsc: ENST00000435091.3:c.137C>T
  hgvsp: ENSP00000413069.3:p.Thr46Met
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458735
  ensembl transcript: ENST00000573677
  gene symbol: BAIAP2
  hgvsc: ENST00000573677.1:c.-38C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000316338
  ensembl transcript: ENST00000321300
  gene symbol: BAIAP2
  hgvsc: ENST00000321300.6:c.137C>T
  hgvsp: ENSP00000316338.6:p.Thr46Met
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461144
  ensembl transcript: ENST00000575245
  gene symbol: BAIAP2
  hgvsc: ENST00000575245.1:c.236C>T
  hgvsp: ENSP00000461144.1:p.Thr79Met
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000570913
  gene symbol: BAIAP2
  hgvsc: ENST00000570913.1:n.241C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000576470
  gene symbol: BAIAP2
  hgvsc: ENST00000576470.1:n.244C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458522
  ensembl transcript: ENST00000575958
  gene symbol: BAIAP2
  hgvsc: ENST00000575958.1:c.-38C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460131
  ensembl transcript: ENST00000572918
  gene symbol: BAIAP2
  hgvsc: ENST00000572918.1:c.77C>T
  hgvsp: ENSP00000460131.1:p.Thr26Met
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573017
  gene symbol: BAIAP2
  hgvsc: ENST00000573017.1:n.172C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000376211
  ensembl transcript: ENST00000392411
  gene symbol: BAIAP2
  hgvsc: ENST00000392411.3:c.-18+22579C>T
  variant of: http://identifiers.org/hgnc/947
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Thr46Met
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: C
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

17-79031688-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79031688
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 79031688
    reference: chr 17
allele count: 2
allele frequency: 1.679825298168991e-5
allele num: 119060
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461736
  ensembl transcript: ENST00000573659
  gene symbol: BAIAP2
  hgvsc: ENST00000573659.1:c.-37G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573894
  gene symbol: BAIAP2
  hgvsc: ENST00000573894.1:n.217G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000459787
  ensembl transcript: ENST00000572073
  gene symbol: BAIAP2
  hgvsc: ENST00000572073.1:c.-37G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000459730
  ensembl transcript: ENST00000574804
  gene symbol: BAIAP2
  hgvsc: ENST00000574804.1:c.-37G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000316338
  ensembl transcript: ENST00000321300
  gene symbol: BAIAP2
  hgvsc: ENST00000321300.6:c.138G>A
  hgvsp: ENST00000321300.6:c.138G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458964
  ensembl transcript: ENST00000575712
  gene symbol: BAIAP2
  hgvsc: ENST00000575712.1:c.138G>A
  hgvsp: ENST00000575712.1:c.138G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458735
  ensembl transcript: ENST00000573677
  gene symbol: BAIAP2
  hgvsc: ENST00000573677.1:c.-37G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461144
  ensembl transcript: ENST00000575245
  gene symbol: BAIAP2
  hgvsc: ENST00000575245.1:c.237G>A
  hgvsp: ENST00000575245.1:c.237G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000413069
  ensembl transcript: ENST00000435091
  gene symbol: BAIAP2
  hgvsc: ENST00000435091.3:c.138G>A
  hgvsp: ENST00000435091.3:c.138G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458202
  ensembl transcript: ENST00000571530
  gene symbol: BAIAP2
  hgvsc: ENST00000571530.1:c.78G>A
  hgvsp: ENST00000571530.1:c.78G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460492
  ensembl transcript: ENST00000572329
  gene symbol: BAIAP2
  hgvsc: ENST00000572329.1:c.237G>A
  hgvsp: ENST00000572329.1:c.237G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460344
  ensembl transcript: ENST00000575750
  gene symbol: BAIAP2
  hgvsc: ENST00000575750.1:c.138G>A
  hgvsp: ENST00000575750.1:c.138G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000376211
  ensembl transcript: ENST00000392411
  gene symbol: BAIAP2
  hgvsc: ENST00000392411.3:c.-18+22580G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458522
  ensembl transcript: ENST00000575958
  gene symbol: BAIAP2
  hgvsc: ENST00000575958.1:c.-37G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000315685
  ensembl transcript: ENST00000321280
  gene symbol: BAIAP2
  hgvsc: ENST00000321280.7:c.138G>A
  hgvsp: ENST00000321280.7:c.138G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000401022
  ensembl transcript: ENST00000428708
  gene symbol: BAIAP2
  hgvsc: ENST00000428708.2:c.138G>A
  hgvsp: ENST00000428708.2:c.138G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000570913
  gene symbol: BAIAP2
  hgvsc: ENST00000570913.1:n.242G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460131
  ensembl transcript: ENST00000572918
  gene symbol: BAIAP2
  hgvsc: ENST00000572918.1:c.78G>A
  hgvsp: ENST00000572918.1:c.78G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573017
  gene symbol: BAIAP2
  hgvsc: ENST00000573017.1:n.173G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000576470
  gene symbol: BAIAP2
  hgvsc: ENST00000576470.1:n.245G>A
  variant of: http://identifiers.org/hgnc/947
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Thr46Thr
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

17-79031688-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79031688
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 79031688
    reference: chr 17
allele count: 4
allele frequency: 3.359650596337981e-5
allele num: 119060
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000315685
  ensembl transcript: ENST00000321280
  gene symbol: BAIAP2
  hgvsc: ENST00000321280.7:c.138G>T
  hgvsp: ENST00000321280.7:c.138G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000401022
  ensembl transcript: ENST00000428708
  gene symbol: BAIAP2
  hgvsc: ENST00000428708.2:c.138G>T
  hgvsp: ENST00000428708.2:c.138G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000459730
  ensembl transcript: ENST00000574804
  gene symbol: BAIAP2
  hgvsc: ENST00000574804.1:c.-37G>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000459787
  ensembl transcript: ENST00000572073
  gene symbol: BAIAP2
  hgvsc: ENST00000572073.1:c.-37G>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000376211
  ensembl transcript: ENST00000392411
  gene symbol: BAIAP2
  hgvsc: ENST00000392411.3:c.-18+22580G>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460131
  ensembl transcript: ENST00000572918
  gene symbol: BAIAP2
  hgvsc: ENST00000572918.1:c.78G>T
  hgvsp: ENST00000572918.1:c.78G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461736
  ensembl transcript: ENST00000573659
  gene symbol: BAIAP2
  hgvsc: ENST00000573659.1:c.-37G>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458735
  ensembl transcript: ENST00000573677
  gene symbol: BAIAP2
  hgvsc: ENST00000573677.1:c.-37G>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460492
  ensembl transcript: ENST00000572329
  gene symbol: BAIAP2
  hgvsc: ENST00000572329.1:c.237G>T
  hgvsp: ENST00000572329.1:c.237G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461144
  ensembl transcript: ENST00000575245
  gene symbol: BAIAP2
  hgvsc: ENST00000575245.1:c.237G>T
  hgvsp: ENST00000575245.1:c.237G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458522
  ensembl transcript: ENST00000575958
  gene symbol: BAIAP2
  hgvsc: ENST00000575958.1:c.-37G>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458964
  ensembl transcript: ENST00000575712
  gene symbol: BAIAP2
  hgvsc: ENST00000575712.1:c.138G>T
  hgvsp: ENST00000575712.1:c.138G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460344
  ensembl transcript: ENST00000575750
  gene symbol: BAIAP2
  hgvsc: ENST00000575750.1:c.138G>T
  hgvsp: ENST00000575750.1:c.138G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000570913
  gene symbol: BAIAP2
  hgvsc: ENST00000570913.1:n.242G>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000576470
  gene symbol: BAIAP2
  hgvsc: ENST00000576470.1:n.245G>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000316338
  ensembl transcript: ENST00000321300
  gene symbol: BAIAP2
  hgvsc: ENST00000321300.6:c.138G>T
  hgvsp: ENST00000321300.6:c.138G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573017
  gene symbol: BAIAP2
  hgvsc: ENST00000573017.1:n.173G>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573894
  gene symbol: BAIAP2
  hgvsc: ENST00000573894.1:n.217G>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458494
  ensembl transcript: ENST00000575989
  gene symbol: BAIAP2
  hgvsc: ENST00000575989.1:c.-37G>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458202
  ensembl transcript: ENST00000571530
  gene symbol: BAIAP2
  hgvsc: ENST00000571530.1:c.78G>T
  hgvsp: ENST00000571530.1:c.78G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Thr46Thr
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

17-79031694-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79031694
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 79031694
    reference: chr 17
allele count: 1
allele frequency: 8.37885846432282e-6
allele num: 119348
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458202
  ensembl transcript: ENST00000571530
  gene symbol: BAIAP2
  hgvsc: ENST00000571530.1:c.84A>G
  hgvsp: ENST00000571530.1:c.84A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458964
  ensembl transcript: ENST00000575712
  gene symbol: BAIAP2
  hgvsc: ENST00000575712.1:c.144A>G
  hgvsp: ENST00000575712.1:c.144A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460492
  ensembl transcript: ENST00000572329
  gene symbol: BAIAP2
  hgvsc: ENST00000572329.1:c.243A>G
  hgvsp: ENST00000572329.1:c.243A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573894
  gene symbol: BAIAP2
  hgvsc: ENST00000573894.1:n.223A>G
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460131
  ensembl transcript: ENST00000572918
  gene symbol: BAIAP2
  hgvsc: ENST00000572918.1:c.84A>G
  hgvsp: ENST00000572918.1:c.84A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000413069
  ensembl transcript: ENST00000435091
  gene symbol: BAIAP2
  hgvsc: ENST00000435091.3:c.144A>G
  hgvsp: ENST00000435091.3:c.144A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461736
  ensembl transcript: ENST00000573659
  gene symbol: BAIAP2
  hgvsc: ENST00000573659.1:c.-31A>G
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460344
  ensembl transcript: ENST00000575750
  gene symbol: BAIAP2
  hgvsc: ENST00000575750.1:c.144A>G
  hgvsp: ENST00000575750.1:c.144A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000570913
  gene symbol: BAIAP2
  hgvsc: ENST00000570913.1:n.248A>G
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461144
  ensembl transcript: ENST00000575245
  gene symbol: BAIAP2
  hgvsc: ENST00000575245.1:c.243A>G
  hgvsp: ENST00000575245.1:c.243A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458735
  ensembl transcript: ENST00000573677
  gene symbol: BAIAP2
  hgvsc: ENST00000573677.1:c.-31A>G
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458522
  ensembl transcript: ENST00000575958
  gene symbol: BAIAP2
  hgvsc: ENST00000575958.1:c.-31A>G
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000315685
  ensembl transcript: ENST00000321280
  gene symbol: BAIAP2
  hgvsc: ENST00000321280.7:c.144A>G
  hgvsp: ENST00000321280.7:c.144A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000316338
  ensembl transcript: ENST00000321300
  gene symbol: BAIAP2
  hgvsc: ENST00000321300.6:c.144A>G
  hgvsp: ENST00000321300.6:c.144A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458494
  ensembl transcript: ENST00000575989
  gene symbol: BAIAP2
  hgvsc: ENST00000575989.1:c.-31A>G
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573017
  gene symbol: BAIAP2
  hgvsc: ENST00000573017.1:n.179A>G
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000401022
  ensembl transcript: ENST00000428708
  gene symbol: BAIAP2
  hgvsc: ENST00000428708.2:c.144A>G
  hgvsp: ENST00000428708.2:c.144A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000459730
  ensembl transcript: ENST00000574804
  gene symbol: BAIAP2
  hgvsc: ENST00000574804.1:c.-31A>G
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000376211
  ensembl transcript: ENST00000392411
  gene symbol: BAIAP2
  hgvsc: ENST00000392411.3:c.-18+22586A>G
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000459787
  ensembl transcript: ENST00000572073
  gene symbol: BAIAP2
  hgvsc: ENST00000572073.1:c.-31A>G
  variant of: http://identifiers.org/hgnc/947
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Ala48Ala
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ

17-79031703-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79031703
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 79031703
    reference: chr 17
allele count: 30
allele frequency: 2.512731171267757e-4
allele num: 119392
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000459787
  ensembl transcript: ENST00000572073
  gene symbol: BAIAP2
  hgvsc: ENST00000572073.1:c.-22C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460344
  ensembl transcript: ENST00000575750
  gene symbol: BAIAP2
  hgvsc: ENST00000575750.1:c.153C>T
  hgvsp: ENST00000575750.1:c.153C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000315685
  ensembl transcript: ENST00000321280
  gene symbol: BAIAP2
  hgvsc: ENST00000321280.7:c.153C>T
  hgvsp: ENST00000321280.7:c.153C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000413069
  ensembl transcript: ENST00000435091
  gene symbol: BAIAP2
  hgvsc: ENST00000435091.3:c.153C>T
  hgvsp: ENST00000435091.3:c.153C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460492
  ensembl transcript: ENST00000572329
  gene symbol: BAIAP2
  hgvsc: ENST00000572329.1:c.252C>T
  hgvsp: ENST00000572329.1:c.252C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458964
  ensembl transcript: ENST00000575712
  gene symbol: BAIAP2
  hgvsc: ENST00000575712.1:c.153C>T
  hgvsp: ENST00000575712.1:c.153C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573894
  gene symbol: BAIAP2
  hgvsc: ENST00000573894.1:n.232C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460131
  ensembl transcript: ENST00000572918
  gene symbol: BAIAP2
  hgvsc: ENST00000572918.1:c.93C>T
  hgvsp: ENST00000572918.1:c.93C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458735
  ensembl transcript: ENST00000573677
  gene symbol: BAIAP2
  hgvsc: ENST00000573677.1:c.-22C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000459730
  ensembl transcript: ENST00000574804
  gene symbol: BAIAP2
  hgvsc: ENST00000574804.1:c.-22C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458522
  ensembl transcript: ENST00000575958
  gene symbol: BAIAP2
  hgvsc: ENST00000575958.1:c.-22C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000576470
  gene symbol: BAIAP2
  hgvsc: ENST00000576470.1:n.260C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461144
  ensembl transcript: ENST00000575245
  gene symbol: BAIAP2
  hgvsc: ENST00000575245.1:c.252C>T
  hgvsp: ENST00000575245.1:c.252C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000316338
  ensembl transcript: ENST00000321300
  gene symbol: BAIAP2
  hgvsc: ENST00000321300.6:c.153C>T
  hgvsp: ENST00000321300.6:c.153C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461736
  ensembl transcript: ENST00000573659
  gene symbol: BAIAP2
  hgvsc: ENST00000573659.1:c.-22C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458202
  ensembl transcript: ENST00000571530
  gene symbol: BAIAP2
  hgvsc: ENST00000571530.1:c.93C>T
  hgvsp: ENST00000571530.1:c.93C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000570913
  gene symbol: BAIAP2
  hgvsc: ENST00000570913.1:n.257C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458494
  ensembl transcript: ENST00000575989
  gene symbol: BAIAP2
  hgvsc: ENST00000575989.1:c.-22C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000401022
  ensembl transcript: ENST00000428708
  gene symbol: BAIAP2
  hgvsc: ENST00000428708.2:c.153C>T
  hgvsp: ENST00000428708.2:c.153C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000376211
  ensembl transcript: ENST00000392411
  gene symbol: BAIAP2
  hgvsc: ENST00000392411.3:c.-18+22595C>T
  variant of: http://identifiers.org/hgnc/947
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Gly51Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Other
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/17-79031711-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79031711
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 79031711
    reference: chr 17
allele count: 1
allele frequency: 8.385603595746822e-6
allele num: 119252
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458735
  ensembl transcript: ENST00000573677
  gene symbol: BAIAP2
  hgvsc: ENST00000573677.1:c.-14A>C
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460492
  ensembl transcript: ENST00000572329
  gene symbol: BAIAP2
  hgvsc: ENST00000572329.1:c.260A>C
  hgvsp: ENSP00000460492.1:p.Asp87Ala
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461144
  ensembl transcript: ENST00000575245
  gene symbol: BAIAP2
  hgvsc: ENST00000575245.1:c.260A>C
  hgvsp: ENSP00000461144.1:p.Asp87Ala
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573894
  gene symbol: BAIAP2
  hgvsc: ENST00000573894.1:n.240A>C
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460344
  ensembl transcript: ENST00000575750
  gene symbol: BAIAP2
  hgvsc: ENST00000575750.1:c.161A>C
  hgvsp: ENSP00000460344.1:p.Asp54Ala
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000316338
  ensembl transcript: ENST00000321300
  gene symbol: BAIAP2
  hgvsc: ENST00000321300.6:c.161A>C
  hgvsp: ENSP00000316338.6:p.Asp54Ala
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000459730
  ensembl transcript: ENST00000574804
  gene symbol: BAIAP2
  hgvsc: ENST00000574804.1:c.-14A>C
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000315685
  ensembl transcript: ENST00000321280
  gene symbol: BAIAP2
  hgvsc: ENST00000321280.7:c.161A>C
  hgvsp: ENSP00000315685.7:p.Asp54Ala
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458202
  ensembl transcript: ENST00000571530
  gene symbol: BAIAP2
  hgvsc: ENST00000571530.1:c.101A>C
  hgvsp: ENSP00000458202.1:p.Asp34Ala
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458522
  ensembl transcript: ENST00000575958
  gene symbol: BAIAP2
  hgvsc: ENST00000575958.1:c.-14A>C
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000576470
  gene symbol: BAIAP2
  hgvsc: ENST00000576470.1:n.268A>C
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458964
  ensembl transcript: ENST00000575712
  gene symbol: BAIAP2
  hgvsc: ENST00000575712.1:c.161A>C
  hgvsp: ENSP00000458964.1:p.Asp54Ala
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000413069
  ensembl transcript: ENST00000435091
  gene symbol: BAIAP2
  hgvsc: ENST00000435091.3:c.161A>C
  hgvsp: ENSP00000413069.3:p.Asp54Ala
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000401022
  ensembl transcript: ENST00000428708
  gene symbol: BAIAP2
  hgvsc: ENST00000428708.2:c.161A>C
  hgvsp: ENSP00000401022.2:p.Asp54Ala
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458494
  ensembl transcript: ENST00000575989
  gene symbol: BAIAP2
  hgvsc: ENST00000575989.1:c.-14A>C
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000459787
  ensembl transcript: ENST00000572073
  gene symbol: BAIAP2
  hgvsc: ENST00000572073.1:c.-14A>C
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573017
  gene symbol: BAIAP2
  hgvsc: ENST00000573017.1:n.196A>C
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460131
  ensembl transcript: ENST00000572918
  gene symbol: BAIAP2
  hgvsc: ENST00000572918.1:c.101A>C
  hgvsp: ENSP00000460131.1:p.Asp34Ala
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000376211
  ensembl transcript: ENST00000392411
  gene symbol: BAIAP2
  hgvsc: ENST00000392411.3:c.-18+22603A>C
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461736
  ensembl transcript: ENST00000573659
  gene symbol: BAIAP2
  hgvsc: ENST00000573659.1:c.-14A>C
  variant of: http://identifiers.org/hgnc/947
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Asp54Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: A
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff

17-79031712-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79031712
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 79031712
    reference: chr 17
allele count: 5
allele frequency: 4.194560493951444e-5
allele num: 119202
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000315685
  ensembl transcript: ENST00000321280
  gene symbol: BAIAP2
  hgvsc: ENST00000321280.7:c.162C>T
  hgvsp: ENST00000321280.7:c.162C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461144
  ensembl transcript: ENST00000575245
  gene symbol: BAIAP2
  hgvsc: ENST00000575245.1:c.261C>T
  hgvsp: ENST00000575245.1:c.261C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000376211
  ensembl transcript: ENST00000392411
  gene symbol: BAIAP2
  hgvsc: ENST00000392411.3:c.-18+22604C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000576470
  gene symbol: BAIAP2
  hgvsc: ENST00000576470.1:n.269C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000570913
  gene symbol: BAIAP2
  hgvsc: ENST00000570913.1:n.266C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458964
  ensembl transcript: ENST00000575712
  gene symbol: BAIAP2
  hgvsc: ENST00000575712.1:c.162C>T
  hgvsp: ENST00000575712.1:c.162C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000459787
  ensembl transcript: ENST00000572073
  gene symbol: BAIAP2
  hgvsc: ENST00000572073.1:c.-13C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573017
  gene symbol: BAIAP2
  hgvsc: ENST00000573017.1:n.197C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458202
  ensembl transcript: ENST00000571530
  gene symbol: BAIAP2
  hgvsc: ENST00000571530.1:c.102C>T
  hgvsp: ENST00000571530.1:c.102C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573894
  gene symbol: BAIAP2
  hgvsc: ENST00000573894.1:n.241C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458735
  ensembl transcript: ENST00000573677
  gene symbol: BAIAP2
  hgvsc: ENST00000573677.1:c.-13C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461736
  ensembl transcript: ENST00000573659
  gene symbol: BAIAP2
  hgvsc: ENST00000573659.1:c.-13C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460131
  ensembl transcript: ENST00000572918
  gene symbol: BAIAP2
  hgvsc: ENST00000572918.1:c.102C>T
  hgvsp: ENST00000572918.1:c.102C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458522
  ensembl transcript: ENST00000575958
  gene symbol: BAIAP2
  hgvsc: ENST00000575958.1:c.-13C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000401022
  ensembl transcript: ENST00000428708
  gene symbol: BAIAP2
  hgvsc: ENST00000428708.2:c.162C>T
  hgvsp: ENST00000428708.2:c.162C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000413069
  ensembl transcript: ENST00000435091
  gene symbol: BAIAP2
  hgvsc: ENST00000435091.3:c.162C>T
  hgvsp: ENST00000435091.3:c.162C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460344
  ensembl transcript: ENST00000575750
  gene symbol: BAIAP2
  hgvsc: ENST00000575750.1:c.162C>T
  hgvsp: ENST00000575750.1:c.162C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000316338
  ensembl transcript: ENST00000321300
  gene symbol: BAIAP2
  hgvsc: ENST00000321300.6:c.162C>T
  hgvsp: ENST00000321300.6:c.162C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000459730
  ensembl transcript: ENST00000574804
  gene symbol: BAIAP2
  hgvsc: ENST00000574804.1:c.-13C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458494
  ensembl transcript: ENST00000575989
  gene symbol: BAIAP2
  hgvsc: ENST00000575989.1:c.-13C>T
  variant of: http://identifiers.org/hgnc/947
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Asp54Asp
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum

17-79031715-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79031715
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 79031715
    reference: chr 17
allele count: 3
allele frequency: 2.518341923677451e-5
allele num: 119126
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458964
  ensembl transcript: ENST00000575712
  gene symbol: BAIAP2
  hgvsc: ENST00000575712.1:c.165C>T
  hgvsp: ENST00000575712.1:c.165C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461736
  ensembl transcript: ENST00000573659
  gene symbol: BAIAP2
  hgvsc: ENST00000573659.1:c.-10C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000316338
  ensembl transcript: ENST00000321300
  gene symbol: BAIAP2
  hgvsc: ENST00000321300.6:c.165C>T
  hgvsp: ENST00000321300.6:c.165C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461144
  ensembl transcript: ENST00000575245
  gene symbol: BAIAP2
  hgvsc: ENST00000575245.1:c.264C>T
  hgvsp: ENST00000575245.1:c.264C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000459730
  ensembl transcript: ENST00000574804
  gene symbol: BAIAP2
  hgvsc: ENST00000574804.1:c.-10C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458202
  ensembl transcript: ENST00000571530
  gene symbol: BAIAP2
  hgvsc: ENST00000571530.1:c.105C>T
  hgvsp: ENST00000571530.1:c.105C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000576470
  gene symbol: BAIAP2
  hgvsc: ENST00000576470.1:n.272C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460492
  ensembl transcript: ENST00000572329
  gene symbol: BAIAP2
  hgvsc: ENST00000572329.1:c.264C>T
  hgvsp: ENST00000572329.1:c.264C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000413069
  ensembl transcript: ENST00000435091
  gene symbol: BAIAP2
  hgvsc: ENST00000435091.3:c.165C>T
  hgvsp: ENST00000435091.3:c.165C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458522
  ensembl transcript: ENST00000575958
  gene symbol: BAIAP2
  hgvsc: ENST00000575958.1:c.-10C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000315685
  ensembl transcript: ENST00000321280
  gene symbol: BAIAP2
  hgvsc: ENST00000321280.7:c.165C>T
  hgvsp: ENST00000321280.7:c.165C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460131
  ensembl transcript: ENST00000572918
  gene symbol: BAIAP2
  hgvsc: ENST00000572918.1:c.105C>T
  hgvsp: ENST00000572918.1:c.105C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460344
  ensembl transcript: ENST00000575750
  gene symbol: BAIAP2
  hgvsc: ENST00000575750.1:c.165C>T
  hgvsp: ENST00000575750.1:c.165C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458735
  ensembl transcript: ENST00000573677
  gene symbol: BAIAP2
  hgvsc: ENST00000573677.1:c.-10C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000376211
  ensembl transcript: ENST00000392411
  gene symbol: BAIAP2
  hgvsc: ENST00000392411.3:c.-18+22607C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000459787
  ensembl transcript: ENST00000572073
  gene symbol: BAIAP2
  hgvsc: ENST00000572073.1:c.-10C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573894
  gene symbol: BAIAP2
  hgvsc: ENST00000573894.1:n.244C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573017
  gene symbol: BAIAP2
  hgvsc: ENST00000573017.1:n.200C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458494
  ensembl transcript: ENST00000575989
  gene symbol: BAIAP2
  hgvsc: ENST00000575989.1:c.-10C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000401022
  ensembl transcript: ENST00000428708
  gene symbol: BAIAP2
  hgvsc: ENST00000428708.2:c.165C>T
  hgvsp: ENST00000428708.2:c.165C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Ala55Ala
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

17-79031719-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79031719
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 79031719
    reference: chr 17
allele count: 1
allele frequency: 8.403643819960336e-6
allele num: 118996
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000401022
  ensembl transcript: ENST00000428708
  gene symbol: BAIAP2
  hgvsc: ENST00000428708.2:c.169G>A
  hgvsp: ENSP00000401022.2:p.Val57Met
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000413069
  ensembl transcript: ENST00000435091
  gene symbol: BAIAP2
  hgvsc: ENST00000435091.3:c.169G>A
  hgvsp: ENSP00000413069.3:p.Val57Met
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460131
  ensembl transcript: ENST00000572918
  gene symbol: BAIAP2
  hgvsc: ENST00000572918.1:c.109G>A
  hgvsp: ENSP00000460131.1:p.Val37Met
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460492
  ensembl transcript: ENST00000572329
  gene symbol: BAIAP2
  hgvsc: ENST00000572329.1:c.268G>A
  hgvsp: ENSP00000460492.1:p.Val90Met
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458494
  ensembl transcript: ENST00000575989
  gene symbol: BAIAP2
  hgvsc: ENST00000575989.1:c.-6G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573894
  gene symbol: BAIAP2
  hgvsc: ENST00000573894.1:n.248G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461144
  ensembl transcript: ENST00000575245
  gene symbol: BAIAP2
  hgvsc: ENST00000575245.1:c.268G>A
  hgvsp: ENSP00000461144.1:p.Val90Met
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000576470
  gene symbol: BAIAP2
  hgvsc: ENST00000576470.1:n.276G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000315685
  ensembl transcript: ENST00000321280
  gene symbol: BAIAP2
  hgvsc: ENST00000321280.7:c.169G>A
  hgvsp: ENSP00000315685.7:p.Val57Met
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460344
  ensembl transcript: ENST00000575750
  gene symbol: BAIAP2
  hgvsc: ENST00000575750.1:c.169G>A
  hgvsp: ENSP00000460344.1:p.Val57Met
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458735
  ensembl transcript: ENST00000573677
  gene symbol: BAIAP2
  hgvsc: ENST00000573677.1:c.-6G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458522
  ensembl transcript: ENST00000575958
  gene symbol: BAIAP2
  hgvsc: ENST00000575958.1:c.-6G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573017
  gene symbol: BAIAP2
  hgvsc: ENST00000573017.1:n.204G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458964
  ensembl transcript: ENST00000575712
  gene symbol: BAIAP2
  hgvsc: ENST00000575712.1:c.169G>A
  hgvsp: ENSP00000458964.1:p.Val57Met
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000570913
  gene symbol: BAIAP2
  hgvsc: ENST00000570913.1:n.273G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458202
  ensembl transcript: ENST00000571530
  gene symbol: BAIAP2
  hgvsc: ENST00000571530.1:c.109G>A
  hgvsp: ENSP00000458202.1:p.Val37Met
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000316338
  ensembl transcript: ENST00000321300
  gene symbol: BAIAP2
  hgvsc: ENST00000321300.6:c.169G>A
  hgvsp: ENSP00000316338.6:p.Val57Met
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000459787
  ensembl transcript: ENST00000572073
  gene symbol: BAIAP2
  hgvsc: ENST00000572073.1:c.-6G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461736
  ensembl transcript: ENST00000573659
  gene symbol: BAIAP2
  hgvsc: ENST00000573659.1:c.-6G>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000459730
  ensembl transcript: ENST00000574804
  gene symbol: BAIAP2
  hgvsc: ENST00000574804.1:c.-6G>A
  variant of: http://identifiers.org/hgnc/947
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Val57Met
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum

17-79031734-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79031734
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 79031734
    reference: chr 17
allele count: 1
allele frequency: 8.469551960701279e-6
allele num: 118070
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000459730
  ensembl transcript: ENST00000574804
  gene symbol: BAIAP2
  hgvsc: ENST00000574804.1:c.10C>G
  hgvsp: ENSP00000459730.1:p.Leu4Val
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000315685
  ensembl transcript: ENST00000321280
  gene symbol: BAIAP2
  hgvsc: ENST00000321280.7:c.184C>G
  hgvsp: ENSP00000315685.7:p.Leu62Val
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461144
  ensembl transcript: ENST00000575245
  gene symbol: BAIAP2
  hgvsc: ENST00000575245.1:c.283C>G
  hgvsp: ENSP00000461144.1:p.Leu95Val
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000413069
  ensembl transcript: ENST00000435091
  gene symbol: BAIAP2
  hgvsc: ENST00000435091.3:c.184C>G
  hgvsp: ENSP00000413069.3:p.Leu62Val
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000459787
  ensembl transcript: ENST00000572073
  gene symbol: BAIAP2
  hgvsc: ENST00000572073.1:c.10C>G
  hgvsp: ENSP00000459787.1:p.Leu4Val
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461736
  ensembl transcript: ENST00000573659
  gene symbol: BAIAP2
  hgvsc: ENST00000573659.1:c.10C>G
  hgvsp: ENSP00000461736.1:p.Leu4Val
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460131
  ensembl transcript: ENST00000572918
  gene symbol: BAIAP2
  hgvsc: ENST00000572918.1:c.124C>G
  hgvsp: ENSP00000460131.1:p.Leu42Val
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458964
  ensembl transcript: ENST00000575712
  gene symbol: BAIAP2
  hgvsc: ENST00000575712.1:c.184C>G
  hgvsp: ENSP00000458964.1:p.Leu62Val
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460344
  ensembl transcript: ENST00000575750
  gene symbol: BAIAP2
  hgvsc: ENST00000575750.1:c.184C>G
  hgvsp: ENSP00000460344.1:p.Leu62Val
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000570913
  gene symbol: BAIAP2
  hgvsc: ENST00000570913.1:n.288C>G
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000376211
  ensembl transcript: ENST00000392411
  gene symbol: BAIAP2
  hgvsc: ENST00000392411.3:c.-18+22626C>G
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458735
  ensembl transcript: ENST00000573677
  gene symbol: BAIAP2
  hgvsc: ENST00000573677.1:c.10C>G
  hgvsp: ENSP00000458735.1:p.Leu4Val
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573017
  gene symbol: BAIAP2
  hgvsc: ENST00000573017.1:n.219C>G
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458202
  ensembl transcript: ENST00000571530
  gene symbol: BAIAP2
  hgvsc: ENST00000571530.1:c.124C>G
  hgvsp: ENSP00000458202.1:p.Leu42Val
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458522
  ensembl transcript: ENST00000575958
  gene symbol: BAIAP2
  hgvsc: ENST00000575958.1:c.10C>G
  hgvsp: ENSP00000458522.1:p.Leu4Val
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000401022
  ensembl transcript: ENST00000428708
  gene symbol: BAIAP2
  hgvsc: ENST00000428708.2:c.184C>G
  hgvsp: ENSP00000401022.2:p.Leu62Val
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458494
  ensembl transcript: ENST00000575989
  gene symbol: BAIAP2
  hgvsc: ENST00000575989.1:c.10C>G
  hgvsp: ENSP00000458494.1:p.Leu4Val
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000316338
  ensembl transcript: ENST00000321300
  gene symbol: BAIAP2
  hgvsc: ENST00000321300.6:c.184C>G
  hgvsp: ENSP00000316338.6:p.Leu62Val
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000576470
  gene symbol: BAIAP2
  hgvsc: ENST00000576470.1:n.291C>G
  variant of: http://identifiers.org/hgnc/947
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Leu62Val
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum

17-79031738-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79031738
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 79031738
    reference: chr 17
allele count: 1
allele frequency: 8.512376996152406e-6
allele num: 117476
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461144
  ensembl transcript: ENST00000575245
  gene symbol: BAIAP2
  hgvsc: ENST00000575245.1:c.287C>T
  hgvsp: ENSP00000461144.1:p.Ala96Val
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000401022
  ensembl transcript: ENST00000428708
  gene symbol: BAIAP2
  hgvsc: ENST00000428708.2:c.188C>T
  hgvsp: ENSP00000401022.2:p.Ala63Val
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000459730
  ensembl transcript: ENST00000574804
  gene symbol: BAIAP2
  hgvsc: ENST00000574804.1:c.14C>T
  hgvsp: ENSP00000459730.1:p.Ala5Val
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000413069
  ensembl transcript: ENST00000435091
  gene symbol: BAIAP2
  hgvsc: ENST00000435091.3:c.188C>T
  hgvsp: ENSP00000413069.3:p.Ala63Val
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000459787
  ensembl transcript: ENST00000572073
  gene symbol: BAIAP2
  hgvsc: ENST00000572073.1:c.14C>T
  hgvsp: ENSP00000459787.1:p.Ala5Val
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460344
  ensembl transcript: ENST00000575750
  gene symbol: BAIAP2
  hgvsc: ENST00000575750.1:c.188C>T
  hgvsp: ENSP00000460344.1:p.Ala63Val
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573894
  gene symbol: BAIAP2
  hgvsc: ENST00000573894.1:n.267C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460492
  ensembl transcript: ENST00000572329
  gene symbol: BAIAP2
  hgvsc: ENST00000572329.1:c.287C>T
  hgvsp: ENSP00000460492.1:p.Ala96Val
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458735
  ensembl transcript: ENST00000573677
  gene symbol: BAIAP2
  hgvsc: ENST00000573677.1:c.14C>T
  hgvsp: ENSP00000458735.1:p.Ala5Val
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000315685
  ensembl transcript: ENST00000321280
  gene symbol: BAIAP2
  hgvsc: ENST00000321280.7:c.188C>T
  hgvsp: ENSP00000315685.7:p.Ala63Val
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458202
  ensembl transcript: ENST00000571530
  gene symbol: BAIAP2
  hgvsc: ENST00000571530.1:c.128C>T
  hgvsp: ENSP00000458202.1:p.Ala43Val
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458522
  ensembl transcript: ENST00000575958
  gene symbol: BAIAP2
  hgvsc: ENST00000575958.1:c.14C>T
  hgvsp: ENSP00000458522.1:p.Ala5Val
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000316338
  ensembl transcript: ENST00000321300
  gene symbol: BAIAP2
  hgvsc: ENST00000321300.6:c.188C>T
  hgvsp: ENSP00000316338.6:p.Ala63Val
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000570913
  gene symbol: BAIAP2
  hgvsc: ENST00000570913.1:n.292C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573017
  gene symbol: BAIAP2
  hgvsc: ENST00000573017.1:n.223C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461736
  ensembl transcript: ENST00000573659
  gene symbol: BAIAP2
  hgvsc: ENST00000573659.1:c.14C>T
  hgvsp: ENSP00000461736.1:p.Ala5Val
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000376211
  ensembl transcript: ENST00000392411
  gene symbol: BAIAP2
  hgvsc: ENST00000392411.3:c.-18+22630C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458494
  ensembl transcript: ENST00000575989
  gene symbol: BAIAP2
  hgvsc: ENST00000575989.1:c.14C>T
  hgvsp: ENSP00000458494.1:p.Ala5Val
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458964
  ensembl transcript: ENST00000575712
  gene symbol: BAIAP2
  hgvsc: ENST00000575712.1:c.188C>T
  hgvsp: ENSP00000458964.1:p.Ala63Val
  variant of: http://identifiers.org/hgnc/947
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Ala63Val
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: QD

17-79031739-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79031739
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 79031739
    reference: chr 17
allele count: 1
allele frequency: 8.5090451149572e-6
allele num: 117522
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000376211
  ensembl transcript: ENST00000392411
  gene symbol: BAIAP2
  hgvsc: ENST00000392411.3:c.-18+22631C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458735
  ensembl transcript: ENST00000573677
  gene symbol: BAIAP2
  hgvsc: ENST00000573677.1:c.15C>T
  hgvsp: ENST00000573677.1:c.15C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000315685
  ensembl transcript: ENST00000321280
  gene symbol: BAIAP2
  hgvsc: ENST00000321280.7:c.189C>T
  hgvsp: ENST00000321280.7:c.189C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000459787
  ensembl transcript: ENST00000572073
  gene symbol: BAIAP2
  hgvsc: ENST00000572073.1:c.15C>T
  hgvsp: ENST00000572073.1:c.15C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000570913
  gene symbol: BAIAP2
  hgvsc: ENST00000570913.1:n.293C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000413069
  ensembl transcript: ENST00000435091
  gene symbol: BAIAP2
  hgvsc: ENST00000435091.3:c.189C>T
  hgvsp: ENST00000435091.3:c.189C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458202
  ensembl transcript: ENST00000571530
  gene symbol: BAIAP2
  hgvsc: ENST00000571530.1:c.129C>T
  hgvsp: ENST00000571530.1:c.129C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458522
  ensembl transcript: ENST00000575958
  gene symbol: BAIAP2
  hgvsc: ENST00000575958.1:c.15C>T
  hgvsp: ENST00000575958.1:c.15C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460492
  ensembl transcript: ENST00000572329
  gene symbol: BAIAP2
  hgvsc: ENST00000572329.1:c.288C>T
  hgvsp: ENST00000572329.1:c.288C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000459730
  ensembl transcript: ENST00000574804
  gene symbol: BAIAP2
  hgvsc: ENST00000574804.1:c.15C>T
  hgvsp: ENST00000574804.1:c.15C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000576470
  gene symbol: BAIAP2
  hgvsc: ENST00000576470.1:n.296C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460131
  ensembl transcript: ENST00000572918
  gene symbol: BAIAP2
  hgvsc: ENST00000572918.1:c.129C>T
  hgvsp: ENST00000572918.1:c.129C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461736
  ensembl transcript: ENST00000573659
  gene symbol: BAIAP2
  hgvsc: ENST00000573659.1:c.15C>T
  hgvsp: ENST00000573659.1:c.15C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460344
  ensembl transcript: ENST00000575750
  gene symbol: BAIAP2
  hgvsc: ENST00000575750.1:c.189C>T
  hgvsp: ENST00000575750.1:c.189C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573017
  gene symbol: BAIAP2
  hgvsc: ENST00000573017.1:n.224C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458964
  ensembl transcript: ENST00000575712
  gene symbol: BAIAP2
  hgvsc: ENST00000575712.1:c.189C>T
  hgvsp: ENST00000575712.1:c.189C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000316338
  ensembl transcript: ENST00000321300
  gene symbol: BAIAP2
  hgvsc: ENST00000321300.6:c.189C>T
  hgvsp: ENST00000321300.6:c.189C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000401022
  ensembl transcript: ENST00000428708
  gene symbol: BAIAP2
  hgvsc: ENST00000428708.2:c.189C>T
  hgvsp: ENST00000428708.2:c.189C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461144
  ensembl transcript: ENST00000575245
  gene symbol: BAIAP2
  hgvsc: ENST00000575245.1:c.288C>T
  hgvsp: ENST00000575245.1:c.288C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Ala63Ala
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

17-79031742-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79031742
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 79031742
    reference: chr 17
allele count: 43
allele frequency: 3.66718973869141e-4
allele num: 117256
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000570913
  gene symbol: BAIAP2
  hgvsc: ENST00000570913.1:n.296C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460131
  ensembl transcript: ENST00000572918
  gene symbol: BAIAP2
  hgvsc: ENST00000572918.1:c.132C>T
  hgvsp: ENST00000572918.1:c.132C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461144
  ensembl transcript: ENST00000575245
  gene symbol: BAIAP2
  hgvsc: ENST00000575245.1:c.291C>T
  hgvsp: ENST00000575245.1:c.291C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000315685
  ensembl transcript: ENST00000321280
  gene symbol: BAIAP2
  hgvsc: ENST00000321280.7:c.192C>T
  hgvsp: ENST00000321280.7:c.192C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458964
  ensembl transcript: ENST00000575712
  gene symbol: BAIAP2
  hgvsc: ENST00000575712.1:c.192C>T
  hgvsp: ENST00000575712.1:c.192C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458202
  ensembl transcript: ENST00000571530
  gene symbol: BAIAP2
  hgvsc: ENST00000571530.1:c.132C>T
  hgvsp: ENST00000571530.1:c.132C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573017
  gene symbol: BAIAP2
  hgvsc: ENST00000573017.1:n.227C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458522
  ensembl transcript: ENST00000575958
  gene symbol: BAIAP2
  hgvsc: ENST00000575958.1:c.18C>T
  hgvsp: ENST00000575958.1:c.18C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460492
  ensembl transcript: ENST00000572329
  gene symbol: BAIAP2
  hgvsc: ENST00000572329.1:c.291C>T
  hgvsp: ENST00000572329.1:c.291C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000459730
  ensembl transcript: ENST00000574804
  gene symbol: BAIAP2
  hgvsc: ENST00000574804.1:c.18C>T
  hgvsp: ENST00000574804.1:c.18C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000316338
  ensembl transcript: ENST00000321300
  gene symbol: BAIAP2
  hgvsc: ENST00000321300.6:c.192C>T
  hgvsp: ENST00000321300.6:c.192C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458735
  ensembl transcript: ENST00000573677
  gene symbol: BAIAP2
  hgvsc: ENST00000573677.1:c.18C>T
  hgvsp: ENST00000573677.1:c.18C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461736
  ensembl transcript: ENST00000573659
  gene symbol: BAIAP2
  hgvsc: ENST00000573659.1:c.18C>T
  hgvsp: ENST00000573659.1:c.18C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000401022
  ensembl transcript: ENST00000428708
  gene symbol: BAIAP2
  hgvsc: ENST00000428708.2:c.192C>T
  hgvsp: ENST00000428708.2:c.192C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000413069
  ensembl transcript: ENST00000435091
  gene symbol: BAIAP2
  hgvsc: ENST00000435091.3:c.192C>T
  hgvsp: ENST00000435091.3:c.192C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458494
  ensembl transcript: ENST00000575989
  gene symbol: BAIAP2
  hgvsc: ENST00000575989.1:c.18C>T
  hgvsp: ENST00000575989.1:c.18C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000459787
  ensembl transcript: ENST00000572073
  gene symbol: BAIAP2
  hgvsc: ENST00000572073.1:c.18C>T
  hgvsp: ENST00000572073.1:c.18C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573894
  gene symbol: BAIAP2
  hgvsc: ENST00000573894.1:n.271C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460344
  ensembl transcript: ENST00000575750
  gene symbol: BAIAP2
  hgvsc: ENST00000575750.1:c.192C>T
  hgvsp: ENST00000575750.1:c.192C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Ser64Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: DP

17-79031748-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79031748
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 79031748
    reference: chr 17
allele count: 2
allele frequency: 1.723068440278448e-5
allele num: 116072
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000570913
  gene symbol: BAIAP2
  hgvsc: ENST00000570913.1:n.302C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461736
  ensembl transcript: ENST00000573659
  gene symbol: BAIAP2
  hgvsc: ENST00000573659.1:c.24C>T
  hgvsp: ENST00000573659.1:c.24C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000315685
  ensembl transcript: ENST00000321280
  gene symbol: BAIAP2
  hgvsc: ENST00000321280.7:c.198C>T
  hgvsp: ENST00000321280.7:c.198C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000376211
  ensembl transcript: ENST00000392411
  gene symbol: BAIAP2
  hgvsc: ENST00000392411.3:c.-18+22640C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460131
  ensembl transcript: ENST00000572918
  gene symbol: BAIAP2
  hgvsc: ENST00000572918.1:c.138C>T
  hgvsp: ENST00000572918.1:c.138C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000316338
  ensembl transcript: ENST00000321300
  gene symbol: BAIAP2
  hgvsc: ENST00000321300.6:c.198C>T
  hgvsp: ENST00000321300.6:c.198C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461144
  ensembl transcript: ENST00000575245
  gene symbol: BAIAP2
  hgvsc: ENST00000575245.1:c.297C>T
  hgvsp: ENST00000575245.1:c.297C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573894
  gene symbol: BAIAP2
  hgvsc: ENST00000573894.1:n.277C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458202
  ensembl transcript: ENST00000571530
  gene symbol: BAIAP2
  hgvsc: ENST00000571530.1:c.138C>T
  hgvsp: ENST00000571530.1:c.138C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460344
  ensembl transcript: ENST00000575750
  gene symbol: BAIAP2
  hgvsc: ENST00000575750.1:c.198C>T
  hgvsp: ENST00000575750.1:c.198C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000401022
  ensembl transcript: ENST00000428708
  gene symbol: BAIAP2
  hgvsc: ENST00000428708.2:c.198C>T
  hgvsp: ENST00000428708.2:c.198C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458735
  ensembl transcript: ENST00000573677
  gene symbol: BAIAP2
  hgvsc: ENST00000573677.1:c.24C>T
  hgvsp: ENST00000573677.1:c.24C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458494
  ensembl transcript: ENST00000575989
  gene symbol: BAIAP2
  hgvsc: ENST00000575989.1:c.24C>T
  hgvsp: ENST00000575989.1:c.24C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000459787
  ensembl transcript: ENST00000572073
  gene symbol: BAIAP2
  hgvsc: ENST00000572073.1:c.24C>T
  hgvsp: ENST00000572073.1:c.24C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460492
  ensembl transcript: ENST00000572329
  gene symbol: BAIAP2
  hgvsc: ENST00000572329.1:c.297C>T
  hgvsp: ENST00000572329.1:c.297C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000576470
  gene symbol: BAIAP2
  hgvsc: ENST00000576470.1:n.305C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000413069
  ensembl transcript: ENST00000435091
  gene symbol: BAIAP2
  hgvsc: ENST00000435091.3:c.198C>T
  hgvsp: ENST00000435091.3:c.198C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000459730
  ensembl transcript: ENST00000574804
  gene symbol: BAIAP2
  hgvsc: ENST00000574804.1:c.24C>T
  hgvsp: ENST00000574804.1:c.24C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458964
  ensembl transcript: ENST00000575712
  gene symbol: BAIAP2
  hgvsc: ENST00000575712.1:c.198C>T
  hgvsp: ENST00000575712.1:c.198C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Ser66Ser
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD

http://identifiers.org/exac.variant/17-79031754-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79031754
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 79031754
    reference: chr 17
allele count: 9
allele frequency: 8.161044613710554e-5
allele num: 110280
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573894
  gene symbol: BAIAP2
  hgvsc: ENST00000573894.1:n.283C>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460344
  ensembl transcript: ENST00000575750
  gene symbol: BAIAP2
  hgvsc: ENST00000575750.1:c.204C>A
  hgvsp: ENST00000575750.1:c.204C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000576470
  gene symbol: BAIAP2
  hgvsc: ENST00000576470.1:n.311C>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000316338
  ensembl transcript: ENST00000321300
  gene symbol: BAIAP2
  hgvsc: ENST00000321300.6:c.204C>A
  hgvsp: ENST00000321300.6:c.204C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460131
  ensembl transcript: ENST00000572918
  gene symbol: BAIAP2
  hgvsc: ENST00000572918.1:c.144C>A
  hgvsp: ENST00000572918.1:c.144C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458964
  ensembl transcript: ENST00000575712
  gene symbol: BAIAP2
  hgvsc: ENST00000575712.1:c.204C>A
  hgvsp: ENST00000575712.1:c.204C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000401022
  ensembl transcript: ENST00000428708
  gene symbol: BAIAP2
  hgvsc: ENST00000428708.2:c.204C>A
  hgvsp: ENST00000428708.2:c.204C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000413069
  ensembl transcript: ENST00000435091
  gene symbol: BAIAP2
  hgvsc: ENST00000435091.3:c.204C>A
  hgvsp: ENST00000435091.3:c.204C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461736
  ensembl transcript: ENST00000573659
  gene symbol: BAIAP2
  hgvsc: ENST00000573659.1:c.30C>A
  hgvsp: ENST00000573659.1:c.30C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458735
  ensembl transcript: ENST00000573677
  gene symbol: BAIAP2
  hgvsc: ENST00000573677.1:c.30C>A
  hgvsp: ENST00000573677.1:c.30C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000459787
  ensembl transcript: ENST00000572073
  gene symbol: BAIAP2
  hgvsc: ENST00000572073.1:c.30C>A
  hgvsp: ENST00000572073.1:c.30C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000315685
  ensembl transcript: ENST00000321280
  gene symbol: BAIAP2
  hgvsc: ENST00000321280.7:c.204C>A
  hgvsp: ENST00000321280.7:c.204C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573017
  gene symbol: BAIAP2
  hgvsc: ENST00000573017.1:n.239C>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458494
  ensembl transcript: ENST00000575989
  gene symbol: BAIAP2
  hgvsc: ENST00000575989.1:c.30C>A
  hgvsp: ENST00000575989.1:c.30C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460492
  ensembl transcript: ENST00000572329
  gene symbol: BAIAP2
  hgvsc: ENST00000572329.1:c.303C>A
  hgvsp: ENST00000572329.1:c.303C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000459730
  ensembl transcript: ENST00000574804
  gene symbol: BAIAP2
  hgvsc: ENST00000574804.1:c.30C>A
  hgvsp: ENST00000574804.1:c.30C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000376211
  ensembl transcript: ENST00000392411
  gene symbol: BAIAP2
  hgvsc: ENST00000392411.3:c.-18+22646C>A
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458522
  ensembl transcript: ENST00000575958
  gene symbol: BAIAP2
  hgvsc: ENST00000575958.1:c.30C>A
  hgvsp: ENST00000575958.1:c.30C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000570913
  gene symbol: BAIAP2
  hgvsc: ENST00000570913.1:n.308C>A
  variant of: http://identifiers.org/hgnc/947
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Gly68Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
population: African
population: European (Finnish)
reference allele: C
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/17-79031758-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79031758
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 79031758
    reference: chr 17
allele count: 1
allele frequency: 9.261317329776988e-6
allele num: 107976
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458735
  ensembl transcript: ENST00000573677
  gene symbol: BAIAP2
  hgvsc: ENST00000573677.1:c.34A>C
  hgvsp: ENSP00000458735.1:p.Lys12Gln
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573017
  gene symbol: BAIAP2
  hgvsc: ENST00000573017.1:n.243A>C
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000376211
  ensembl transcript: ENST00000392411
  gene symbol: BAIAP2
  hgvsc: ENST00000392411.3:c.-18+22650A>C
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000315685
  ensembl transcript: ENST00000321280
  gene symbol: BAIAP2
  hgvsc: ENST00000321280.7:c.208A>C
  hgvsp: ENSP00000315685.7:p.Lys70Gln
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000576470
  gene symbol: BAIAP2
  hgvsc: ENST00000576470.1:n.315A>C
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000459787
  ensembl transcript: ENST00000572073
  gene symbol: BAIAP2
  hgvsc: ENST00000572073.1:c.34A>C
  hgvsp: ENSP00000459787.1:p.Lys12Gln
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000316338
  ensembl transcript: ENST00000321300
  gene symbol: BAIAP2
  hgvsc: ENST00000321300.6:c.208A>C
  hgvsp: ENSP00000316338.6:p.Lys70Gln
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460492
  ensembl transcript: ENST00000572329
  gene symbol: BAIAP2
  hgvsc: ENST00000572329.1:c.307A>C
  hgvsp: ENSP00000460492.1:p.Lys103Gln
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458964
  ensembl transcript: ENST00000575712
  gene symbol: BAIAP2
  hgvsc: ENST00000575712.1:c.208A>C
  hgvsp: ENSP00000458964.1:p.Lys70Gln
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458494
  ensembl transcript: ENST00000575989
  gene symbol: BAIAP2
  hgvsc: ENST00000575989.1:c.34A>C
  hgvsp: ENSP00000458494.1:p.Lys12Gln
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461736
  ensembl transcript: ENST00000573659
  gene symbol: BAIAP2
  hgvsc: ENST00000573659.1:c.34A>C
  hgvsp: ENSP00000461736.1:p.Lys12Gln
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000413069
  ensembl transcript: ENST00000435091
  gene symbol: BAIAP2
  hgvsc: ENST00000435091.3:c.208A>C
  hgvsp: ENSP00000413069.3:p.Lys70Gln
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000401022
  ensembl transcript: ENST00000428708
  gene symbol: BAIAP2
  hgvsc: ENST00000428708.2:c.208A>C
  hgvsp: ENSP00000401022.2:p.Lys70Gln
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458202
  ensembl transcript: ENST00000571530
  gene symbol: BAIAP2
  hgvsc: ENST00000571530.1:c.148A>C
  hgvsp: ENSP00000458202.1:p.Lys50Gln
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460344
  ensembl transcript: ENST00000575750
  gene symbol: BAIAP2
  hgvsc: ENST00000575750.1:c.208A>C
  hgvsp: ENSP00000460344.1:p.Lys70Gln
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460131
  ensembl transcript: ENST00000572918
  gene symbol: BAIAP2
  hgvsc: ENST00000572918.1:c.148A>C
  hgvsp: ENSP00000460131.1:p.Lys50Gln
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458522
  ensembl transcript: ENST00000575958
  gene symbol: BAIAP2
  hgvsc: ENST00000575958.1:c.34A>C
  hgvsp: ENSP00000458522.1:p.Lys12Gln
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000459730
  ensembl transcript: ENST00000574804
  gene symbol: BAIAP2
  hgvsc: ENST00000574804.1:c.34A>C
  hgvsp: ENSP00000459730.1:p.Lys12Gln
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000570913
  gene symbol: BAIAP2
  hgvsc: ENST00000570913.1:n.312A>C
  variant of: http://identifiers.org/hgnc/947
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Lys70Gln
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: DP

17-79031763-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79031763
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 79031763
    reference: chr 17
allele count: 1
allele frequency: 1.432664756446991e-5
allele num: 69800
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461736
  ensembl transcript: ENST00000573659
  gene symbol: BAIAP2
  hgvsc: ENST00000573659.1:c.39A>G
  hgvsp: ENST00000573659.1:c.39A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458735
  ensembl transcript: ENST00000573677
  gene symbol: BAIAP2
  hgvsc: ENST00000573677.1:c.39A>G
  hgvsp: ENST00000573677.1:c.39A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000401022
  ensembl transcript: ENST00000428708
  gene symbol: BAIAP2
  hgvsc: ENST00000428708.2:c.213A>G
  hgvsp: ENST00000428708.2:c.213A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458494
  ensembl transcript: ENST00000575989
  gene symbol: BAIAP2
  hgvsc: ENST00000575989.1:c.39A>G
  hgvsp: ENST00000575989.1:c.39A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458522
  ensembl transcript: ENST00000575958
  gene symbol: BAIAP2
  hgvsc: ENST00000575958.1:c.39A>G
  hgvsp: ENST00000575958.1:c.39A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460492
  ensembl transcript: ENST00000572329
  gene symbol: BAIAP2
  hgvsc: ENST00000572329.1:c.312A>G
  hgvsp: ENST00000572329.1:c.312A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458202
  ensembl transcript: ENST00000571530
  gene symbol: BAIAP2
  hgvsc: ENST00000571530.1:c.153A>G
  hgvsp: ENST00000571530.1:c.153A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000376211
  ensembl transcript: ENST00000392411
  gene symbol: BAIAP2
  hgvsc: ENST00000392411.3:c.-18+22655A>G
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000316338
  ensembl transcript: ENST00000321300
  gene symbol: BAIAP2
  hgvsc: ENST00000321300.6:c.213A>G
  hgvsp: ENST00000321300.6:c.213A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000459787
  ensembl transcript: ENST00000572073
  gene symbol: BAIAP2
  hgvsc: ENST00000572073.1:c.39A>G
  hgvsp: ENST00000572073.1:c.39A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000315685
  ensembl transcript: ENST00000321280
  gene symbol: BAIAP2
  hgvsc: ENST00000321280.7:c.213A>G
  hgvsp: ENST00000321280.7:c.213A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000413069
  ensembl transcript: ENST00000435091
  gene symbol: BAIAP2
  hgvsc: ENST00000435091.3:c.213A>G
  hgvsp: ENST00000435091.3:c.213A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460344
  ensembl transcript: ENST00000575750
  gene symbol: BAIAP2
  hgvsc: ENST00000575750.1:c.213A>G
  hgvsp: ENST00000575750.1:c.213A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000576470
  gene symbol: BAIAP2
  hgvsc: ENST00000576470.1:n.320A>G
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000459730
  ensembl transcript: ENST00000574804
  gene symbol: BAIAP2
  hgvsc: ENST00000574804.1:c.39A>G
  hgvsp: ENST00000574804.1:c.39A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460131
  ensembl transcript: ENST00000572918
  gene symbol: BAIAP2
  hgvsc: ENST00000572918.1:c.153A>G
  hgvsp: ENST00000572918.1:c.153A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573894
  gene symbol: BAIAP2
  hgvsc: ENST00000573894.1:n.292A>G
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461144
  ensembl transcript: ENST00000575245
  gene symbol: BAIAP2
  hgvsc: ENST00000575245.1:c.312A>G
  hgvsp: ENST00000575245.1:c.312A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000570913
  gene symbol: BAIAP2
  hgvsc: ENST00000570913.1:n.317A>G
  variant of: http://identifiers.org/hgnc/947
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Glu71Glu
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
reference allele: A
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

17-79031766-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79031766
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 79031766
    reference: chr 17
allele count: 2
allele frequency: 3.88078236572493e-5
allele num: 51536
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000401022
  ensembl transcript: ENST00000428708
  gene symbol: BAIAP2
  hgvsc: ENST00000428708.2:c.216C>T
  hgvsp: ENST00000428708.2:c.216C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460344
  ensembl transcript: ENST00000575750
  gene symbol: BAIAP2
  hgvsc: ENST00000575750.1:c.216C>T
  hgvsp: ENST00000575750.1:c.216C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460492
  ensembl transcript: ENST00000572329
  gene symbol: BAIAP2
  hgvsc: ENST00000572329.1:c.315C>T
  hgvsp: ENST00000572329.1:c.315C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000413069
  ensembl transcript: ENST00000435091
  gene symbol: BAIAP2
  hgvsc: ENST00000435091.3:c.216C>T
  hgvsp: ENST00000435091.3:c.216C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460131
  ensembl transcript: ENST00000572918
  gene symbol: BAIAP2
  hgvsc: ENST00000572918.1:c.156C>T
  hgvsp: ENST00000572918.1:c.156C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573894
  gene symbol: BAIAP2
  hgvsc: ENST00000573894.1:n.295C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000316338
  ensembl transcript: ENST00000321300
  gene symbol: BAIAP2
  hgvsc: ENST00000321300.6:c.216C>T
  hgvsp: ENST00000321300.6:c.216C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458494
  ensembl transcript: ENST00000575989
  gene symbol: BAIAP2
  hgvsc: ENST00000575989.1:c.42C>T
  hgvsp: ENST00000575989.1:c.42C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000570913
  gene symbol: BAIAP2
  hgvsc: ENST00000570913.1:n.320C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000576470
  gene symbol: BAIAP2
  hgvsc: ENST00000576470.1:n.323C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461144
  ensembl transcript: ENST00000575245
  gene symbol: BAIAP2
  hgvsc: ENST00000575245.1:c.315C>T
  hgvsp: ENST00000575245.1:c.315C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000459730
  ensembl transcript: ENST00000574804
  gene symbol: BAIAP2
  hgvsc: ENST00000574804.1:c.42C>T
  hgvsp: ENST00000574804.1:c.42C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573017
  gene symbol: BAIAP2
  hgvsc: ENST00000573017.1:n.251C>T
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458202
  ensembl transcript: ENST00000571530
  gene symbol: BAIAP2
  hgvsc: ENST00000571530.1:c.156C>T
  hgvsp: ENST00000571530.1:c.156C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461736
  ensembl transcript: ENST00000573659
  gene symbol: BAIAP2
  hgvsc: ENST00000573659.1:c.42C>T
  hgvsp: ENST00000573659.1:c.42C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458522
  ensembl transcript: ENST00000575958
  gene symbol: BAIAP2
  hgvsc: ENST00000575958.1:c.42C>T
  hgvsp: ENST00000575958.1:c.42C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000459787
  ensembl transcript: ENST00000572073
  gene symbol: BAIAP2
  hgvsc: ENST00000572073.1:c.42C>T
  hgvsp: ENST00000572073.1:c.42C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/947
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: c.216C>T
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

17-79031772-G-GAC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79031772
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 79031774
    reference: chr 17
allele count: 1
allele frequency: 1.176193836744295e-4
allele num: 8502
alternate allele: GAC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000376211
  ensembl transcript: ENST00000392411
  gene symbol: BAIAP2
  hgvsc: ENST00000392411.3:c.-18+22665_-18+22666dupAC
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573017
  gene symbol: BAIAP2
  hgvsc: ENST00000573017.1:n.252+6_252+7dupAC
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458735
  ensembl transcript: ENST00000573677
  gene symbol: BAIAP2
  hgvsc: ENST00000573677.1:c.43+6_43+7dupAC
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000570913
  gene symbol: BAIAP2
  hgvsc: ENST00000570913.1:n.321+6_321+7dupAC
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460344
  ensembl transcript: ENST00000575750
  gene symbol: BAIAP2
  hgvsc: ENST00000575750.1:c.217+6_217+7dupAC
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460492
  ensembl transcript: ENST00000572329
  gene symbol: BAIAP2
  hgvsc: ENST00000572329.1:c.316+6_316+7dupAC
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458202
  ensembl transcript: ENST00000571530
  gene symbol: BAIAP2
  hgvsc: ENST00000571530.1:c.157+6_157+7dupAC
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000316338
  ensembl transcript: ENST00000321300
  gene symbol: BAIAP2
  hgvsc: ENST00000321300.6:c.217+6_217+7dupAC
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000401022
  ensembl transcript: ENST00000428708
  gene symbol: BAIAP2
  hgvsc: ENST00000428708.2:c.217+6_217+7dupAC
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460131
  ensembl transcript: ENST00000572918
  gene symbol: BAIAP2
  hgvsc: ENST00000572918.1:c.157+6_157+7dupAC
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000315685
  ensembl transcript: ENST00000321280
  gene symbol: BAIAP2
  hgvsc: ENST00000321280.7:c.217+6_217+7dupAC
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458964
  ensembl transcript: ENST00000575712
  gene symbol: BAIAP2
  hgvsc: ENST00000575712.1:c.217+6_217+7dupAC
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458522
  ensembl transcript: ENST00000575958
  gene symbol: BAIAP2
  hgvsc: ENST00000575958.1:c.43+6_43+7dupAC
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461144
  ensembl transcript: ENST00000575245
  gene symbol: BAIAP2
  hgvsc: ENST00000575245.1:c.316+6_316+7dupAC
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000459730
  ensembl transcript: ENST00000574804
  gene symbol: BAIAP2
  hgvsc: ENST00000574804.1:c.43+6_43+7dupAC
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000413069
  ensembl transcript: ENST00000435091
  gene symbol: BAIAP2
  hgvsc: ENST00000435091.3:c.217+6_217+7dupAC
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000576470
  gene symbol: BAIAP2
  hgvsc: ENST00000576470.1:n.324+6_324+7dupAC
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458494
  ensembl transcript: ENST00000575989
  gene symbol: BAIAP2
  hgvsc: ENST00000575989.1:c.43+6_43+7dupAC
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461736
  ensembl transcript: ENST00000573659
  gene symbol: BAIAP2
  hgvsc: ENST00000573659.1:c.43+6_43+7dupAC
  variant of: http://identifiers.org/hgnc/947
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: c.217+6_217+7dupAC
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: DP

17-79031772-GAC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79031772
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 79031770
    reference: chr 17
allele count: 1
allele frequency: 1.176193836744295e-4
allele num: 8502
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460492
  ensembl transcript: ENST00000572329
  gene symbol: BAIAP2
  hgvsc: ENST00000572329.1:c.316+6_316+7delAC
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000315685
  ensembl transcript: ENST00000321280
  gene symbol: BAIAP2
  hgvsc: ENST00000321280.7:c.217+6_217+7delAC
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458964
  ensembl transcript: ENST00000575712
  gene symbol: BAIAP2
  hgvsc: ENST00000575712.1:c.217+6_217+7delAC
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000316338
  ensembl transcript: ENST00000321300
  gene symbol: BAIAP2
  hgvsc: ENST00000321300.6:c.217+6_217+7delAC
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458202
  ensembl transcript: ENST00000571530
  gene symbol: BAIAP2
  hgvsc: ENST00000571530.1:c.157+6_157+7delAC
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458494
  ensembl transcript: ENST00000575989
  gene symbol: BAIAP2
  hgvsc: ENST00000575989.1:c.43+6_43+7delAC
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460344
  ensembl transcript: ENST00000575750
  gene symbol: BAIAP2
  hgvsc: ENST00000575750.1:c.217+6_217+7delAC
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460131
  ensembl transcript: ENST00000572918
  gene symbol: BAIAP2
  hgvsc: ENST00000572918.1:c.157+6_157+7delAC
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000413069
  ensembl transcript: ENST00000435091
  gene symbol: BAIAP2
  hgvsc: ENST00000435091.3:c.217+6_217+7delAC
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000376211
  ensembl transcript: ENST00000392411
  gene symbol: BAIAP2
  hgvsc: ENST00000392411.3:c.-18+22665_-18+22666delAC
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573017
  gene symbol: BAIAP2
  hgvsc: ENST00000573017.1:n.252+6_252+7delAC
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458522
  ensembl transcript: ENST00000575958
  gene symbol: BAIAP2
  hgvsc: ENST00000575958.1:c.43+6_43+7delAC
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000570913
  gene symbol: BAIAP2
  hgvsc: ENST00000570913.1:n.321+6_321+7delAC
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573894
  gene symbol: BAIAP2
  hgvsc: ENST00000573894.1:n.296+6_296+7delAC
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461144
  ensembl transcript: ENST00000575245
  gene symbol: BAIAP2
  hgvsc: ENST00000575245.1:c.316+6_316+7delAC
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000459730
  ensembl transcript: ENST00000574804
  gene symbol: BAIAP2
  hgvsc: ENST00000574804.1:c.43+6_43+7delAC
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000459787
  ensembl transcript: ENST00000572073
  gene symbol: BAIAP2
  hgvsc: ENST00000572073.1:c.43+6_43+7delAC
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000576470
  gene symbol: BAIAP2
  hgvsc: ENST00000576470.1:n.324+6_324+7delAC
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000401022
  ensembl transcript: ENST00000428708
  gene symbol: BAIAP2
  hgvsc: ENST00000428708.2:c.217+6_217+7delAC
  variant of: http://identifiers.org/hgnc/947
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: c.217+6_217+7delAC
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: GAC
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum

http://identifiers.org/exac.variant/17-79031773-AC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79031773
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 79031772
    reference: chr 17
allele count: 71
allele frequency: 3.283996299722479e-2
allele num: 2162
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000316338
  ensembl transcript: ENST00000321300
  gene symbol: BAIAP2
  hgvsc: ENST00000321300.6:c.217+22delC
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458522
  ensembl transcript: ENST00000575958
  gene symbol: BAIAP2
  hgvsc: ENST00000575958.1:c.43+22delC
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460492
  ensembl transcript: ENST00000572329
  gene symbol: BAIAP2
  hgvsc: ENST00000572329.1:c.316+22delC
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000459787
  ensembl transcript: ENST00000572073
  gene symbol: BAIAP2
  hgvsc: ENST00000572073.1:c.43+22delC
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573017
  gene symbol: BAIAP2
  hgvsc: ENST00000573017.1:n.252+22delC
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461736
  ensembl transcript: ENST00000573659
  gene symbol: BAIAP2
  hgvsc: ENST00000573659.1:c.43+22delC
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458735
  ensembl transcript: ENST00000573677
  gene symbol: BAIAP2
  hgvsc: ENST00000573677.1:c.43+22delC
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000459730
  ensembl transcript: ENST00000574804
  gene symbol: BAIAP2
  hgvsc: ENST00000574804.1:c.43+22delC
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460131
  ensembl transcript: ENST00000572918
  gene symbol: BAIAP2
  hgvsc: ENST00000572918.1:c.157+22delC
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458202
  ensembl transcript: ENST00000571530
  gene symbol: BAIAP2
  hgvsc: ENST00000571530.1:c.157+22delC
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573894
  gene symbol: BAIAP2
  hgvsc: ENST00000573894.1:n.296+22delC
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000413069
  ensembl transcript: ENST00000435091
  gene symbol: BAIAP2
  hgvsc: ENST00000435091.3:c.217+22delC
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000376211
  ensembl transcript: ENST00000392411
  gene symbol: BAIAP2
  hgvsc: ENST00000392411.3:c.-18+22681delC
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000315685
  ensembl transcript: ENST00000321280
  gene symbol: BAIAP2
  hgvsc: ENST00000321280.7:c.217+22delC
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000401022
  ensembl transcript: ENST00000428708
  gene symbol: BAIAP2
  hgvsc: ENST00000428708.2:c.217+22delC
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460344
  ensembl transcript: ENST00000575750
  gene symbol: BAIAP2
  hgvsc: ENST00000575750.1:c.217+22delC
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000576470
  gene symbol: BAIAP2
  hgvsc: ENST00000576470.1:n.324+22delC
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458964
  ensembl transcript: ENST00000575712
  gene symbol: BAIAP2
  hgvsc: ENST00000575712.1:c.217+22delC
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458494
  ensembl transcript: ENST00000575989
  gene symbol: BAIAP2
  hgvsc: ENST00000575989.1:c.43+22delC
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461144
  ensembl transcript: ENST00000575245
  gene symbol: BAIAP2
  hgvsc: ENST00000575245.1:c.316+22delC
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000570913
  gene symbol: BAIAP2
  hgvsc: ENST00000570913.1:n.321+22delC
  variant of: http://identifiers.org/hgnc/947
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.95to100.00
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 10
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
reference allele: AC
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ

http://identifiers.org/exac.variant/17-79031773-ACC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79031773
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 79031771
    reference: chr 17
allele count: 86
allele frequency: 3.977798334875116e-2
allele num: 2162
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460344
  ensembl transcript: ENST00000575750
  gene symbol: BAIAP2
  hgvsc: ENST00000575750.1:c.217+21_217+22delCC
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461736
  ensembl transcript: ENST00000573659
  gene symbol: BAIAP2
  hgvsc: ENST00000573659.1:c.43+21_43+22delCC
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573017
  gene symbol: BAIAP2
  hgvsc: ENST00000573017.1:n.252+21_252+22delCC
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460131
  ensembl transcript: ENST00000572918
  gene symbol: BAIAP2
  hgvsc: ENST00000572918.1:c.157+21_157+22delCC
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458735
  ensembl transcript: ENST00000573677
  gene symbol: BAIAP2
  hgvsc: ENST00000573677.1:c.43+21_43+22delCC
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458202
  ensembl transcript: ENST00000571530
  gene symbol: BAIAP2
  hgvsc: ENST00000571530.1:c.157+21_157+22delCC
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458964
  ensembl transcript: ENST00000575712
  gene symbol: BAIAP2
  hgvsc: ENST00000575712.1:c.217+21_217+22delCC
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000316338
  ensembl transcript: ENST00000321300
  gene symbol: BAIAP2
  hgvsc: ENST00000321300.6:c.217+21_217+22delCC
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000576470
  gene symbol: BAIAP2
  hgvsc: ENST00000576470.1:n.324+21_324+22delCC
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000573894
  gene symbol: BAIAP2
  hgvsc: ENST00000573894.1:n.296+21_296+22delCC
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000459730
  ensembl transcript: ENST00000574804
  gene symbol: BAIAP2
  hgvsc: ENST00000574804.1:c.43+21_43+22delCC
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458494
  ensembl transcript: ENST00000575989
  gene symbol: BAIAP2
  hgvsc: ENST00000575989.1:c.43+21_43+22delCC
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000461144
  ensembl transcript: ENST00000575245
  gene symbol: BAIAP2
  hgvsc: ENST00000575245.1:c.316+21_316+22delCC
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000401022
  ensembl transcript: ENST00000428708
  gene symbol: BAIAP2
  hgvsc: ENST00000428708.2:c.217+21_217+22delCC
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000413069
  ensembl transcript: ENST00000435091
  gene symbol: BAIAP2
  hgvsc: ENST00000435091.3:c.217+21_217+22delCC
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000376211
  ensembl transcript: ENST00000392411
  gene symbol: BAIAP2
  hgvsc: ENST00000392411.3:c.-18+22680_-18+22681delCC
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000458522
  ensembl transcript: ENST00000575958
  gene symbol: BAIAP2
  hgvsc: ENST00000575958.1:c.43+21_43+22delCC
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000315685
  ensembl transcript: ENST00000321280
  gene symbol: BAIAP2
  hgvsc: ENST00000321280.7:c.217+21_217+22delCC
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000460492
  ensembl transcript: ENST00000572329
  gene symbol: BAIAP2
  hgvsc: ENST00000572329.1:c.316+21_316+22delCC
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl transcript: ENST00000570913
  gene symbol: BAIAP2
  hgvsc: ENST00000570913.1:n.321+21_321+22delCC
  variant of: http://identifiers.org/hgnc/947
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175866
  ensembl protein: ENSP00000459787
  ensembl transcript: ENST00000572073
  gene symbol: BAIAP2
  hgvsc: ENST00000572073.1:c.43+21_43+22delCC
  variant of: http://identifiers.org/hgnc/947
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.95to100.00
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 1
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: ACC
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/17-79031773-ACCCC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79031773
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 79031769
    reference: chr 17
allele count: 155
allele frequency: 7.169287696577244e-2
allele num: 2162
alternate allele: A
canonical: false
filter: VQSRTrancheINDEL99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3958
  bin: 1.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17147
  bin: 7.5e0
  variant carriers: 595
genotype depth: GenotypeDepth
  all individuals: 12326
  bin: 1.25e1
  variant carriers: 164
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5712
  bin: 2.5e0
  variant carriers: 138
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1850
  bin: 1.75e1
  variant carriers: 107
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 7.25e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 21056
  bin: 2.5e0
  variant carriers: 91
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 5.75e1
  variant carriers: 34
genotype quality: GenotypeQuality
  all individuals: 2614
  bin: 1.25e1
  variant carriers: 64
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 9.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 9.75e1
  variant carriers: 85
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 5.25e1
  variant carriers: 32
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 4.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 12536
  bin: 7.5e0
  variant carriers: 94
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 8.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 8.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 3.25e1
  variant carriers: 46
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 6.25e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 4.25e1
  variant carriers: 35
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 2.75e1
  variant carriers: 73
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 3.75e1
  variant carriers: 36
genotype quality: GenotypeQuality
  all individuals: 612
  bin: 2.25e1
  variant carriers: 95
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 7.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 6.75e1
  variant carriers: 17
num of homozygotes: 6
population: African
  type: Population
  allele count: 12
  allele frequency: 2.690582959641256e-2
  allele num: 446
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 9
  allele frequency: 4.166666666666666e-2
  allele num: 216
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 4
  allele frequency: 1.428571428571428e-1
  allele num: 28
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 33
  allele frequency: 1.178571428571429e-1
  allele num: 280
  num of homozygotes: 1
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: ACCCC
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

http://identifiers.org/exac.variant/17-79031773-ACCCCC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79031773
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 79031768
    reference: chr 17
allele count: 132
allele frequency: 6.105457909343201e-2
allele num: 2162
alternate allele: A
canonical: false
filter: VQSRTrancheINDEL99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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genotype depth: GenotypeDepth
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  bin: 8.25e1
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genotype depth: GenotypeDepth
  all individuals: 3958
  bin: 1.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 17147
  bin: 7.5e0
  variant carriers: 343
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
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genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
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genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
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genotype depth: GenotypeDepth
  all individuals: 5712
  bin: 2.5e0
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 12326
  bin: 1.25e1
  variant carriers: 142
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 31
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 5.25e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 12536
  bin: 7.5e0
  variant carriers: 48
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 4.75e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 2614
  bin: 1.25e1
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 1850
  bin: 1.75e1
  variant carriers: 46
genotype quality: GenotypeQuality
  all individuals: 612
  bin: 2.25e1
  variant carriers: 46
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 5.75e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 9.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.25e1
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genotype quality: GenotypeQuality
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  bin: 7.25e1
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genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 33
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 8.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 9.75e1
  variant carriers: 86
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 6.25e1
  variant carriers: 21
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 18
  allele frequency: 6.428571428571428e-2
  allele num: 280
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 1
  allele frequency: 1.0e-2
  allele num: 100
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 78
  allele frequency: 7.222222222222222e-2
  allele num: 1080
  num of homozygotes: 0
population: African
  type: Population
  allele count: 23
  allele frequency: 5.15695067264574e-2
  allele num: 446
  num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
reference allele: ACCCCC
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/17-79031773-ACCC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 79031773
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 79031770
    reference: chr 17
allele count: 99
allele frequency: 4.579093432007401e-2
allele num: 2162
alternate allele: A
canonical: false
filter: VQSRTrancheINDEL99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5712
  bin: 2.5e0
  variant carriers: 76
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17147
  bin: 7.5e0
  variant carriers: 194
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3958
  bin: 1.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
num of homozygotes: 5
reference allele: ACCC

GenotypeDepth
all individuals: 1278
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 18
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
all individuals: 4902
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
all individuals: 6957
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variant carriers: 0

GenotypeDepth
all individuals: 1859
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3143
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66710
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.128492e6

QD
type: SiteQuality
SIO_000300: 1.333e1

MQRankSum
type: SiteQuality
SIO_000300: -1.67e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.62e-1

BaseQRankSum
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SIO_000300: -4.775e0

FS
type: SiteQuality
SIO_000300: 1.0408e1

MQ
type: SiteQuality
SIO_000300: 5.93e1

VQSLOD
type: SiteQuality
SIO_000300: -1.753e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.15e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

GenotypeDepth
all individuals: 1159
bin: 2.25e1
variant carriers: 0

GenotypeDepth
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bin: 9.25e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.49907057624273e-5
allele num: 66708
num of homozygotes: 0

Other
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allele count: 0
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num of homozygotes: 0

MQ
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SIO_000300: 5.744e1

InbreedingCoeff
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SIO_000300: 0.0e0

ClippingRankSum
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SIO_000300: -1.566e0

DP
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SIO_000300: 3.128394e6

QD
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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FS
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SIO_000300: 6.02e-1

VQSLOD
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SIO_000300: -2.609e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3340
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GenotypeQuality
all individuals: 3138
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
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SIO_000300: 4.86e-1

FS
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VQSLOD
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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QD
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ReadPosRankSum
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MQ
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DP
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele num: 11574
num of homozygotes: 0

East Asian
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allele num: 8652
num of homozygotes: 0

South Asian
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African
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allele frequency: 1.923076923076923e-4
allele num: 10400
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66702
num of homozygotes: 0

Other
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FS
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VQSLOD
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BaseQRankSum
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MQ
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MQRankSum
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ClippingRankSum
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DP
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InbreedingCoeff
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QD
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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East Asian
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European (Non-Finnish)
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European (Finnish)
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FS
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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QD
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DP
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BaseQRankSum
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InbreedingCoeff
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MQ
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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allele num: 66680
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Latino
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East Asian
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South Asian
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European (Finnish)
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African
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Other
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MQ
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BaseQRankSum
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FS
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DP
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VQSLOD
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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InbreedingCoeff
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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East Asian
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European (Finnish)
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South Asian
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European (Non-Finnish)
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African
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VQSLOD
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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FS
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DP
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MQ
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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East Asian
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Other
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European (Non-Finnish)
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Latino
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FS
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ReadPosRankSum
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BaseQRankSum
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QD
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VQSLOD
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DP
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MQ
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InbreedingCoeff
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ClippingRankSum
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South Asian
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African
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East Asian
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European (Non-Finnish)
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MQRankSum
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DP
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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FS
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MQ
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.50652324565368e-5
allele num: 66378
num of homozygotes: 0

MQ
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FS
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MQRankSum
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InbreedingCoeff
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QD
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DP
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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VQSLOD
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
allele num: 10306
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele num: 16510
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Other
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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num of homozygotes: 0

FS
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DP
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MQ
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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QD
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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num of homozygotes: 0

South Asian
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allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66358
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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ClippingRankSum
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QD
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MQ
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FS
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MQRankSum
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VQSLOD
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BaseQRankSum
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DP
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ReadPosRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 4.845900368288428e-4
allele num: 10318
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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East Asian
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allele frequency: 9.261403102570039e-4
allele num: 8638
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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MQ
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QD
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FS
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Non-Finnish)
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allele frequency: 6.030271965265633e-5
allele num: 66332
num of homozygotes: 0

Latino
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African
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East Asian
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European (Finnish)
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South Asian
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ReadPosRankSum
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InbreedingCoeff
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DP
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VQSLOD
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MQ
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BaseQRankSum
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FS
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MQRankSum
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QD
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 66300
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Latino
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European (Finnish)
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Other
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African
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East Asian
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South Asian
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VQSLOD
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DP
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MQ
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ClippingRankSum
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ReadPosRankSum
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QD
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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FS
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 15
allele frequency: 1.454898157129001e-3
allele num: 10310
num of homozygotes: 0

Other
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allele count: 6
allele frequency: 6.651884700665188e-3
allele num: 902
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.157675387821255e-4
allele num: 8638
num of homozygotes: 0

Latino
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allele count: 47
allele frequency: 4.066447482263367e-3
allele num: 11558
num of homozygotes: 0

European (Finnish)
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allele count: 8
allele frequency: 1.209921355111918e-3
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
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allele count: 601
allele frequency: 9.066224166540956e-3
allele num: 66290
num of homozygotes: 3

South Asian
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allele count: 93
allele frequency: 5.634314794620138e-3
allele num: 16506
num of homozygotes: 1

InbreedingCoeff
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SIO_000300: 8.3e-3

DP
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ReadPosRankSum
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QD
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SIO_000300: 1.337e1

MQRankSum
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SIO_000300: 7.16e-1

FS
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SIO_000300: 8.23e-1

ClippingRankSum
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SIO_000300: -2.19e-1

VQSLOD
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MQ
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SIO_000300: 5.883e1

BaseQRankSum
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SIO_000300: -3.123e0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
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allele count: 5
allele frequency: 7.54261577915221e-5
allele num: 66290
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8636
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African
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allele count: 1
allele frequency: 9.704968944099378e-5
allele num: 10304
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
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SIO_000300: -1.24e0

VQSLOD
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QD
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MQRankSum
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ReadPosRankSum
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SIO_000300: 3.34e-1

MQ
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SIO_000300: 5.837e1

ClippingRankSum
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SIO_000300: 9.9e-2

InbreedingCoeff
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SIO_000300: 1.5e-3

FS
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SIO_000300: 0.0e0

DP
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SIO_000300: 3.077756e6

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 27

European (Non-Finnish)
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allele count: 3
allele frequency: 4.540501271340356e-5
allele num: 66072
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
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allele count: 3
allele frequency: 2.596952908587258e-4
allele num: 11552
num of homozygotes: 0

African
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allele count: 21
allele frequency: 2.056001566477384e-3
allele num: 10214
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
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SIO_000300: -1.77e-1

QD
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SIO_000300: 1.49e1

InbreedingCoeff
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SIO_000300: -5.999999999999999e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.1e-2

DP
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SIO_000300: 3.059717e6

MQRankSum
type: SiteQuality
SIO_000300: 7.11e-1

MQ
type: SiteQuality
SIO_000300: 5.794e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.92e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.45e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

African
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allele count: 2
allele frequency: 1.954652071931196e-4
allele num: 10232
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66102
num of homozygotes: 0

Latino
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 900
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

FS
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SIO_000300: 0.0e0

ReadPosRankSum
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SIO_000300: 4.17e-1

BaseQRankSum
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SIO_000300: -3.426e0

InbreedingCoeff
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ClippingRankSum
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MQRankSum
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MQ
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VQSLOD
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QD
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SIO_000300: 1.02e1

DP
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SIO_000300: 3.059602e6

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16494
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African
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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East Asian
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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InbreedingCoeff
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SIO_000300: -9.0e-4

BaseQRankSum
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FS
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MQRankSum
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QD
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VQSLOD
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DP
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ReadPosRankSum
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MQ
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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African
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Other
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European (Non-Finnish)
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East Asian
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European (Finnish)
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InbreedingCoeff
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ClippingRankSum
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DP
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BaseQRankSum
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VQSLOD
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ReadPosRankSum
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MQ
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FS
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MQRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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Latino
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European (Finnish)
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Other
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South Asian
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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FS
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MQ
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MQRankSum
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DP
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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Latino
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South Asian
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African
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European (Non-Finnish)
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Other
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QD
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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FS
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MQ
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BaseQRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Non-Finnish)
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East Asian
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African
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European (Finnish)
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Other
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South Asian
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MQ
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BaseQRankSum
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QD
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MQRankSum
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FS
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DP
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InbreedingCoeff
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Finnish)
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Latino
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African
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European (Non-Finnish)
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South Asian
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InbreedingCoeff
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FS
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DP
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QD
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ReadPosRankSum
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VQSLOD
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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East Asian
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South Asian
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European (Finnish)
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African
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Other
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Latino
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VQSLOD
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QD
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ClippingRankSum
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FS
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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DP
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MQ
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GenotypeDepth
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bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11257
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 459
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 802
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 591
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1097
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45339
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2985
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 891
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1023
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5814
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 534
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 263
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8414
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11228
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15412
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6122
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.024590163934426e-4
allele num: 9760
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.566416040100251e-5
allele num: 63840
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.0e-1

MQ
type: SiteQuality
SIO_000300: 5.881e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.97e-1

DP
type: SiteQuality
SIO_000300: 1.386108e6

QD
type: SiteQuality
SIO_000300: 1.365e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.96e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.892e-1

FS
type: SiteQuality
SIO_000300: 7.67e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -6.94e-1

GenotypeDepth
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 140
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 144
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2238
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 579
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 82
bin: 5.25e1
variant carriers: 1

GenotypeDepth
all individuals: 1
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 37421
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 29
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4337
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1296
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11422
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2518
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 19
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 459
bin: 4.25e1
variant carriers: 1

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 291
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 522
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46002
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 944
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 742
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5884
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2836
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1120
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 262
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 374
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 898
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8438
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63988
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15470
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.780309773900659e-4
allele num: 11234
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6142
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9808
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.404e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.96e0

MQ
type: SiteQuality
SIO_000300: 5.726e1

DP
type: SiteQuality
SIO_000300: 1.39252e6

VQSLOD
type: SiteQuality
SIO_000300: -2.035e0

FS
type: SiteQuality
SIO_000300: 7.487e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.62e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.98e0

GenotypeDepth
all individuals: 144
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2047
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 19
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 524
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 37724
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2402
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1279
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 29
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4324
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11522
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 133
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 83
bin: 5.25e1
variant carriers: 1

GenotypeDepth
all individuals: 454
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 910
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 448
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46662
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1136
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 174
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 671
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2710
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 831
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5955
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15534
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11256
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8464
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64154
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9834
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.623903864891198e-4
allele num: 6158
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.218e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.36e0

QD
type: SiteQuality
SIO_000300: 1.318e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.07e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.126e0

VQSLOD
type: SiteQuality
SIO_000300: -2.376e0

MQ
type: SiteQuality
SIO_000300: 5.792e1

MQRankSum
type: SiteQuality
SIO_000300: -1.56e-1

DP
type: SiteQuality
SIO_000300: 1.396675e6

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: splice_region_variant
consequence: intron_variant
ensembl gene: ENSG00000175866
ensembl transcript: ENST00000570913
gene symbol: BAIAP2
hgvsc: ENST00000570913.1:n.235-7C>T
variant of: http://identifiers.org/hgnc/947

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000175866
ensembl protein: ENSP00000376211
ensembl transcript: ENST00000392411
gene symbol: BAIAP2
hgvsc: ENST00000392411.3:c.-18+22566C>T
variant of: http://identifiers.org/hgnc/947

GenotypeDepth
all individuals: 4
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 38940
bin: 2.25e1
variant carriers: 1

GenotypeDepth
all individuals: 98
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 12096
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 144
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 286
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 29
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 81
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 453
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1661
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1133
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4452
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1294
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 19
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 38
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1916
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6091
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 416
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 48437
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 921
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1167
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 375
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11330
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8532
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64954
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9988
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6270
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.290890790135883e-5
allele num: 15896
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.85e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.354e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.816e0

VQSLOD
type: SiteQuality
SIO_000300: -1.572e0

DP
type: SiteQuality
SIO_000300: 1.422921e6

QD
type: SiteQuality
SIO_000300: 1.089e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.82e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.623e1

Annotation
canonical: false
consequence: splice_region_variant
consequence: intron_variant
ensembl gene: ENSG00000175866
ensembl protein: ENSP00000315685
ensembl transcript: ENST00000321280
gene symbol: BAIAP2
hgvsc: ENST00000321280.7:c.131-5C>T
variant of: http://identifiers.org/hgnc/947

Annotation
canonical: false
consequence: splice_region_variant
consequence: intron_variant
consequence: NMD_transcript_variant
ensembl gene: ENSG00000175866
ensembl protein: ENSP00000459730
ensembl transcript: ENST00000574804
gene symbol: BAIAP2
hgvsc: ENST00000574804.1:c.-44-5C>T
variant of: http://identifiers.org/hgnc/947

GenotypeDepth
all individuals: 977
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1295
bin: 3.75e1
variant carriers: 1

GenotypeDepth
all individuals: 39134
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 30
bin: 5.75e1
variant carriers: 1

GenotypeDepth
all individuals: 1
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4487
bin: 3.25e1
variant carriers: 2

GenotypeDepth
all individuals: 252
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 91
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 81
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 12202
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1520
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 19
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 454
bin: 4.25e1
variant carriers: 1

GenotypeDepth
all individuals: 146
bin: 4.75e1
variant carriers: 2

GenotypeDepth
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 357
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1774
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 932
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6134
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 48777
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1185
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 170
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65106
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.252661906551422e-4
allele num: 15966
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 5.85480093676815e-4
allele num: 8540
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11354
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6292
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10028
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.755e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.286e0

QD
type: SiteQuality
SIO_000300: 1.164e1

FS
type: SiteQuality
SIO_000300: 3.279e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.12e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.062e0

DP
type: SiteQuality
SIO_000300: 1.427838e6

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000175866
ensembl transcript: ENST00000573017
gene symbol: BAIAP2
hgvsc: ENST00000573017.1:n.172C>A
variant of: http://identifiers.org/hgnc/947

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 170
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1304
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 20
bin: 6.25e1
variant carriers: 1

GenotypeDepth
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 70
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 610
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 81
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 12747
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1130
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 39349
bin: 2.25e1
variant carriers: 1

GenotypeDepth
all individuals: 145
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4579
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 29
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 454
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 963
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1370
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6284
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 49492
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1201
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65496
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11418
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.239310943115628e-4
allele num: 16138
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8560
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10130
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6350
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.05e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

DP
type: SiteQuality
SIO_000300: 1.441854e6

QD
type: SiteQuality
SIO_000300: 8.369999999999999e0

FS
type: SiteQuality
SIO_000300: 6.051e0

VQSLOD
type: SiteQuality
SIO_000300: -1.225e0

MQ
type: SiteQuality
SIO_000300: 5.892e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.9e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.55e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.86e-1

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000175866
ensembl protein: ENSP00000459730
ensembl transcript: ENST00000574804
gene symbol: BAIAP2
hgvsc: ENST00000574804.1:c.-38C>T
variant of: http://identifiers.org/hgnc/947

GenotypeDepth
all individuals: 12747
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4579
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 20
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 70
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 39349
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 29
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1304
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1130
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 610
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 81
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 170
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 145
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 454
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1370
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6284
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49492
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1201
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 963
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16138
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.574803149606299e-4
allele num: 6350
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11418
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65496
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10130
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.051e0

QD
type: SiteQuality
SIO_000300: 8.369999999999999e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -5.9e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.225e0

MQRankSum
type: SiteQuality
SIO_000300: 2.86e-1

MQ
type: SiteQuality
SIO_000300: 5.892e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.05e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.55e-1

DP
type: SiteQuality
SIO_000300: 1.441854e6

Annotation
canonical: false
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000175866
ensembl protein: ENSP00000458494
ensembl transcript: ENST00000575989
gene symbol: BAIAP2
hgvsc: ENST00000575989.1:c.-37G>A
variant of: http://identifiers.org/hgnc/947

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 456
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 81
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4599
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 1
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 39356
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 66
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 577
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 30
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 19
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 12805
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 4
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 159
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 145
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1307
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1088
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6293
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 965
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49618
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 291
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1206
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1330
bin: 2.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16164
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11432
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6374
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.859988168014199e-5
allele num: 10142
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.526437904506045e-5
allele num: 65512
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.476e0

FS
type: SiteQuality
SIO_000300: 7.775e0

MQRankSum
type: SiteQuality
SIO_000300: 3.11e-1

DP
type: SiteQuality
SIO_000300: 1.443421e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

QD
type: SiteQuality
SIO_000300: 1.035e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.87e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.05e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.340000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.78e1

Annotation
canonical: false
consequence: synonymous_variant
ensembl gene: ENSG00000175866
ensembl protein: ENSP00000413069
ensembl transcript: ENST00000435091
gene symbol: BAIAP2
hgvsc: ENST00000435091.3:c.138G>T
hgvsp: ENST00000435091.3:c.138G>T(p.%3D)
variant of: http://identifiers.org/hgnc/947

GenotypeDepth
all individuals: 577
bin: 1.25e1
variant carriers: 1

GenotypeDepth
all individuals: 30
bin: 5.75e1
variant carriers: 1

GenotypeDepth
all individuals: 159
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 81
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 39356
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4599
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 66
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1088
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 12805
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 456
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1307
bin: 3.75e1
variant carriers: 1

GenotypeDepth
all individuals: 145
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 19
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6293
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1330
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1206
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 36
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 965
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49618
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 61
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 291
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8562
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.957996450404259e-4
allele num: 10142
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.74737578726382e-5
allele num: 11432
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6374
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16164
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.11e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.340000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

QD
type: SiteQuality
SIO_000300: 1.035e1

VQSLOD
type: SiteQuality
SIO_000300: -1.476e0

DP
type: SiteQuality
SIO_000300: 1.443421e6

FS
type: SiteQuality
SIO_000300: 7.775e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.87e0

MQ
type: SiteQuality
SIO_000300: 5.78e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.05e0

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000175866
ensembl transcript: ENST00000576470
gene symbol: BAIAP2
hgvsc: ENST00000576470.1:n.251A>G
variant of: http://identifiers.org/hgnc/947

GenotypeDepth
all individuals: 13009
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 954
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 498
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 142
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 39441
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 107
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4591
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 68
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 453
bin: 4.25e1
variant carriers: 1

GenotypeDepth
all individuals: 29
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1298
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 81
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 19
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1218
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6361
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49938
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 967
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1198
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 62
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16246
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11438
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6404
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.83671060397403e-5
allele num: 10166
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65660
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.44729e6

QD
type: SiteQuality
SIO_000300: 8.69e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.11e0

FS
type: SiteQuality
SIO_000300: 1.579e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.238e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.67e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.18e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000175866
ensembl transcript: ENST00000573017
gene symbol: BAIAP2
hgvsc: ENST00000573017.1:n.188C>T
variant of: http://identifiers.org/hgnc/947

GenotypeDepth
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4619
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 552
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 8.25e1
variant carriers: 1

GenotypeDepth
all individuals: 75
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 13150
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 21
bin: 6.25e1
variant carriers: 2

GenotypeDepth
all individuals: 105
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 39203
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 34
bin: 5.75e1
variant carriers: 6

GenotypeDepth
all individuals: 926
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 7
bin: 7.25e1
variant carriers: 3

GenotypeDepth
all individuals: 87
bin: 5.25e1
variant carriers: 6

GenotypeDepth
all individuals: 147
bin: 4.75e1
variant carriers: 4

GenotypeDepth
all individuals: 4
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1309
bin: 3.75e1
variant carriers: 3

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 8.75e1
variant carriers: 1

GenotypeDepth
all individuals: 2
bin: 7.75e1
variant carriers: 1

GenotypeDepth
all individuals: 455
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 46
bin: 9.75e1
variant carriers: 30

GenotypeQuality
all individuals: 55
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 967
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1291
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 298
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1211
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49868
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6351
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 26
allele frequency: 3.959431060213809e-4
allele num: 65666
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6420
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 3.931590328287793e-4
allele num: 10174
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8550
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16276
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11432
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.14e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

FS
type: SiteQuality
SIO_000300: 5.22e-1

QD
type: SiteQuality
SIO_000300: 1.27e1

DP
type: SiteQuality
SIO_000300: 1.449295e6

MQ
type: SiteQuality
SIO_000300: 5.8e1

MQRankSum
type: SiteQuality
SIO_000300: 6.15e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.969e0

VQSLOD
type: SiteQuality
SIO_000300: 2.84e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.43e-1

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000175866
ensembl transcript: ENST00000570913
gene symbol: BAIAP2
hgvsc: ENST00000570913.1:n.265A>C
variant of: http://identifiers.org/hgnc/947

GenotypeDepth
all individuals: 4
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 19
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 967
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 13144
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4629
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 100
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 38845
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 28
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 793
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 81
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 181
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 455
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 142
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1306
bin: 3.75e1
variant carriers: 1

GenotypeDepth
all individuals: 4
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1195
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 967
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1576
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49568
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6348
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.525087692542321e-5
allele num: 65570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10146
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11420
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6420
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8536
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16284
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.444801e6

FS
type: SiteQuality
SIO_000300: 1.296e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.08e0

QD
type: SiteQuality
SIO_000300: 8.199999999999999e0

MQ
type: SiteQuality
SIO_000300: 5.728e1

MQRankSum
type: SiteQuality
SIO_000300: 2.46e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.402e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.046e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

Annotation
canonical: false
consequence: synonymous_variant
consequence: NMD_transcript_variant
ensembl gene: ENSG00000175866
ensembl protein: ENSP00000460492
ensembl transcript: ENST00000572329
gene symbol: BAIAP2
hgvsc: ENST00000572329.1:c.261C>T
hgvsp: ENST00000572329.1:c.261C>T(p.%3D)
variant of: http://identifiers.org/hgnc/947

GenotypeDepth
all individuals: 81
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1311
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 101
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 850
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 13157
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 19
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 204
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 147
bin: 4.75e1
variant carriers: 4

GenotypeDepth
all individuals: 38719
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 978
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4640
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 455
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 28
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6331
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1192
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49432
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 961
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1638
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11418
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8532
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10140
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16284
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3
allele frequency: 4.672897196261682e-4
allele num: 6420
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.051850947599719e-5
allele num: 65534
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.65e-1

MQ
type: SiteQuality
SIO_000300: 5.851e1

DP
type: SiteQuality
SIO_000300: 1.444338e6

FS
type: SiteQuality
SIO_000300: 2.275e0

MQRankSum
type: SiteQuality
SIO_000300: 6.81e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.338e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.71e-1

QD
type: SiteQuality
SIO_000300: 1.313e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -3.2e-1

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000175866
ensembl transcript: ENST00000570913
gene symbol: BAIAP2
hgvsc: ENST00000570913.1:n.269C>T
variant of: http://identifiers.org/hgnc/947

GenotypeDepth
all individuals: 4
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1009
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1024
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 142
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4615
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 82
bin: 5.25e1
variant carriers: 1

GenotypeDepth
all individuals: 1303
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 232
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 112
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 13215
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 455
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 30
bin: 5.75e1
variant carriers: 2

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 38451
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 19
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 952
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6323
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 49272
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1824
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1185
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10126
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8524
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16282
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6418
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.580432392817882e-5
allele num: 65496
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.836e0

MQ
type: SiteQuality
SIO_000300: 5.708e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.52e-1

DP
type: SiteQuality
SIO_000300: 1.441732e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.09e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.61e-1

QD
type: SiteQuality
SIO_000300: 7.34e0

MQRankSum
type: SiteQuality
SIO_000300: 2.49e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.287e0

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000175866
ensembl protein: ENSP00000376211
ensembl transcript: ENST00000392411
gene symbol: BAIAP2
hgvsc: ENST00000392411.3:c.-18+22611G>A
variant of: http://identifiers.org/hgnc/947

GenotypeDepth
all individuals: 13188
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1058
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 144
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1306
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 329
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 455
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 28
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1408
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 81
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4603
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 37941
bin: 2.25e1
variant carriers: 1

GenotypeDepth
all individuals: 129
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 19
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1172
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 935
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2213
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48753
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6316
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 96
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16264
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6412
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.899029895070283e-5
allele num: 10102
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11396
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65432
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.386e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

QD
type: SiteQuality
SIO_000300: 7.14e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.27e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.604e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.252e0

DP
type: SiteQuality
SIO_000300: 1.43637e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.55e0

MQRankSum
type: SiteQuality
SIO_000300: 7.16e-1

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000175866
ensembl transcript: ENST00000573894
gene symbol: BAIAP2
hgvsc: ENST00000573894.1:n.263C>G
variant of: http://identifiers.org/hgnc/947

Annotation
canonical: false
consequence: missense_variant
consequence: NMD_transcript_variant
ensembl gene: ENSG00000175866
ensembl protein: ENSP00000460492
ensembl transcript: ENST00000572329
gene symbol: BAIAP2
hgvsc: ENST00000572329.1:c.283C>G
hgvsp: ENSP00000460492.1:p.Leu95Val
variant of: http://identifiers.org/hgnc/947

GenotypeDepth
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1292
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 19
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1087
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 12738
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 34279
bin: 2.25e1
variant carriers: 1

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 261
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1312
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 144
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4317
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 83
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4661
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 29
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 463
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5249
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 897
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 249
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 441
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6054
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 724
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44854
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1100
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 1.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6314
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8474
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9992
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11328
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16178
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.540404818386272e-5
allele num: 64918
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.397874e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

QD
type: SiteQuality
SIO_000300: 1.083e1

VQSLOD
type: SiteQuality
SIO_000300: -1.197e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.363e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.84e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.9e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.692e1

MQRankSum
type: SiteQuality
SIO_000300: 1.13e0

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000175866
ensembl transcript: ENST00000576470
gene symbol: BAIAP2
hgvsc: ENST00000576470.1:n.295C>T
variant of: http://identifiers.org/hgnc/947

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000175866
ensembl protein: ENSP00000460131
ensembl transcript: ENST00000572918
gene symbol: BAIAP2
hgvsc: ENST00000572918.1:c.128C>T
hgvsp: ENSP00000460131.1:p.Ala43Val
variant of: http://identifiers.org/hgnc/947

GenotypeDepth
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 19
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7934
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1415
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3815
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1287
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 29282
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 84
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 145
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11320
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4469
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 465
bin: 4.25e1
variant carriers: 1

GenotypeDepth
all individuals: 412
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 28
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5234
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 337
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39094
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10368
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 548
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1404
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 51
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 925
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 777
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 872
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16102
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11288
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.547795938583457e-5
allele num: 64608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8428
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6290
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.78e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.108e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.369e0

MQ
type: SiteQuality
SIO_000300: 5.685e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -8.120000000000001e-1

FS
type: SiteQuality
SIO_000300: 5.224e0

DP
type: SiteQuality
SIO_000300: 1.336322e6

QD
type: SiteQuality
SIO_000300: 1.239e1

Annotation
canonical: false
consequence: synonymous_variant
ensembl gene: ENSG00000175866
ensembl protein: ENSP00000458494
ensembl transcript: ENST00000575989
gene symbol: BAIAP2
hgvsc: ENST00000575989.1:c.15C>T
hgvsp: ENST00000575989.1:c.15C>T(p.%3D)
variant of: http://identifiers.org/hgnc/947

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000175866
ensembl transcript: ENST00000573894
gene symbol: BAIAP2
hgvsc: ENST00000573894.1:n.268C>T
variant of: http://identifiers.org/hgnc/947

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 143
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 19
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11389
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4446
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 29227
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1289
bin: 3.75e1
variant carriers: 1

GenotypeDepth
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 413
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7959
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3801
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1423
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 29
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 83
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 454
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 337
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10415
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5249
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 869
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39166
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 544
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 928
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 778
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1409
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16102
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6328
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8428
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.547843853512058e-5
allele num: 64606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11294
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9898
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.73e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.901e1

DP
type: SiteQuality
SIO_000300: 1.335901e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 5.18e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.019e0

VQSLOD
type: SiteQuality
SIO_000300: -2.067e0

QD
type: SiteQuality
SIO_000300: 5.96e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.76e-1

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000175866
ensembl protein: ENSP00000376211
ensembl transcript: ENST00000392411
gene symbol: BAIAP2
hgvsc: ENST00000392411.3:c.-18+22634C>T
variant of: http://identifiers.org/hgnc/947

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000175866
ensembl transcript: ENST00000576470
gene symbol: BAIAP2
hgvsc: ENST00000576470.1:n.299C>T
variant of: http://identifiers.org/hgnc/947

GenotypeDepth
all individuals: 20
bin: 6.25e1
variant carriers: 1

GenotypeDepth
all individuals: 3836
bin: 1.75e1
variant carriers: 1

GenotypeDepth
all individuals: 28876
bin: 2.25e1
variant carriers: 8

GenotypeDepth
all individuals: 1
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 143
bin: 4.75e1
variant carriers: 1

GenotypeDepth
all individuals: 8042
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1451
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1309
bin: 3.75e1
variant carriers: 7

GenotypeDepth
all individuals: 84
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 419
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 470
bin: 4.25e1
variant carriers: 3

GenotypeDepth
all individuals: 4514
bin: 3.25e1
variant carriers: 7

GenotypeDepth
all individuals: 11480
bin: 2.75e1
variant carriers: 12

GenotypeDepth
all individuals: 4
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 31
bin: 5.75e1
variant carriers: 3

GenotypeQuality
all individuals: 154
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 920
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 851
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1406
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39015
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 578
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 317
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 9.75e1
variant carriers: 43

GenotypeQuality
all individuals: 50
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5193
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 765
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10570
bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 41
allele frequency: 6.3548157103444e-4
allele num: 64518
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9878
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.222775357809582e-5
allele num: 16070
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.162790697674419e-3
allele num: 860
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6222
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11286
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8422
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.9e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.1e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.234e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.52e-1

MQ
type: SiteQuality
SIO_000300: 5.829e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.92e-1

QD
type: SiteQuality
SIO_000300: 1.134e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.336424e6

Annotation
canonical: false
consequence: synonymous_variant
ensembl gene: ENSG00000175866
ensembl protein: ENSP00000458522
ensembl transcript: ENST00000575958
gene symbol: BAIAP2
hgvsc: ENST00000575958.1:c.24C>T
hgvsp: ENST00000575958.1:c.24C>T(p.%3D)
variant of: http://identifiers.org/hgnc/947

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000175866
ensembl transcript: ENST00000573017
gene symbol: BAIAP2
hgvsc: ENST00000573017.1:n.233C>T
variant of: http://identifiers.org/hgnc/947

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9145
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1656
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 685
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 11068
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 143
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4083
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 21044
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1305
bin: 3.75e1
variant carriers: 1

GenotypeDepth
all individuals: 19
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 10930
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 454
bin: 4.25e1
variant carriers: 1

GenotypeDepth
all individuals: 4
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 28
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 81
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19183
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28214
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 840
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 50
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1569
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1139
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 420
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 724
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4663
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2676
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15960
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8336
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.653439153439153e-4
allele num: 6048
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9734
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.919015340706386e-5
allele num: 11212
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63938
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.747e0

MQ
type: SiteQuality
SIO_000300: 5.758e1

MQRankSum
type: SiteQuality
SIO_000300: -1.56e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.596e0

FS
type: SiteQuality
SIO_000300: 1.73e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.500000000000001e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.54e-1

DP
type: SiteQuality
SIO_000300: 1.248493e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.1e-3

QD
type: SiteQuality
SIO_000300: 7.79e0

Annotation
canonical: false
consequence: synonymous_variant
ensembl gene: ENSG00000175866
ensembl protein: ENSP00000458202
ensembl transcript: ENST00000571530
gene symbol: BAIAP2
hgvsc: ENST00000571530.1:c.144C>A
hgvsp: ENST00000571530.1:c.144C>A(p.%3D)
variant of: http://identifiers.org/hgnc/947

Annotation
canonical: false
consequence: synonymous_variant
ensembl gene: ENSG00000175866
ensembl protein: ENSP00000461144
ensembl transcript: ENST00000575245
gene symbol: BAIAP2
hgvsc: ENST00000575245.1:c.303C>A
hgvsp: ENST00000575245.1:c.303C>A(p.%3D)
variant of: http://identifiers.org/hgnc/947

GenotypeDepth
all individuals: 19
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 21199
bin: 1.75e1
variant carriers: 1

GenotypeDepth
all individuals: 12709
bin: 1.25e1
variant carriers: 1

GenotypeDepth
all individuals: 435
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 12942
bin: 2.25e1
variant carriers: 4

GenotypeDepth
all individuals: 1097
bin: 3.75e1
variant carriers: 1

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 141
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3109
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 30
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4860
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2556
bin: 3.25e1
variant carriers: 2

GenotypeDepth
all individuals: 1378
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 80
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4685
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10714
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 315
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 313
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34268
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 329
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 567
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2779
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3739
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1800
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 9.75e1
variant carriers: 9

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.930804378554288e-5
allele num: 60842
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15224
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 796
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8042
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10866
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9204
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 6
allele frequency: 1.130795326045986e-3
allele num: 5306
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.107384e6

QD
type: SiteQuality
SIO_000300: 1.215e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.723e0

MQRankSum
type: SiteQuality
SIO_000300: 2.24e-1

MQ
type: SiteQuality
SIO_000300: 5.824e1

FS
type: SiteQuality
SIO_000300: 4.258e0

VQSLOD
type: SiteQuality
SIO_000300: -1.562e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.8e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.02e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e-1

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000175866
ensembl protein: ENSP00000461144
ensembl transcript: ENST00000575245
gene symbol: BAIAP2
hgvsc: ENST00000575245.1:c.307A>C
hgvsp: ENSP00000461144.1:p.Lys103Gln
variant of: http://identifiers.org/hgnc/947

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000175866
ensembl transcript: ENST00000573894
gene symbol: BAIAP2
hgvsc: ENST00000573894.1:n.287A>C
variant of: http://identifiers.org/hgnc/947

GenotypeDepth
all individuals: 12622
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 428
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 20
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 12266
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1005
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3761
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 80
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1546
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 22140
bin: 1.75e1
variant carriers: 1

GenotypeDepth
all individuals: 4265
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 28
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2195
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 144
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7971
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 430
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 546
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4815
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36174
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1558
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4855
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2823
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8998
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.680954782316356e-5
allele num: 59490
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5320
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 770
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10654
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7884
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14860
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.149999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.81e-1

QD
type: SiteQuality
SIO_000300: 7.71e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.81e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.18e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.234e0

MQRankSum
type: SiteQuality
SIO_000300: -1.81e-1

MQ
type: SiteQuality
SIO_000300: 5.656e1

DP
type: SiteQuality
SIO_000300: 1.081376e6

Annotation
canonical: false
consequence: synonymous_variant
ensembl gene: ENSG00000175866
ensembl protein: ENSP00000458964
ensembl transcript: ENST00000575712
gene symbol: BAIAP2
hgvsc: ENST00000575712.1:c.213A>G
hgvsp: ENST00000575712.1:c.213A>G(p.%3D)
variant of: http://identifiers.org/hgnc/947

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000175866
ensembl transcript: ENST00000573017
gene symbol: BAIAP2
hgvsc: ENST00000573017.1:n.248A>G
variant of: http://identifiers.org/hgnc/947

GenotypeDepth
all individuals: 699
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 13742
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 16463
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 14085
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 17
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9097
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1876
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2532
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 82
bin: 4.75e1
variant carriers: 1

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 171
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 311
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 54
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 26
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1352
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1702
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 897
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3069
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 603
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21170
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29433
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 201
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 500
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9384
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4974
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3036
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38236
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6024
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.307873397855088e-4
allele num: 7646
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.63e0

DP
type: SiteQuality
SIO_000300: 8.67139e5

VQSLOD
type: SiteQuality
SIO_000300: -1.724e0

QD
type: SiteQuality
SIO_000300: 1.088e1

MQ
type: SiteQuality
SIO_000300: 5.811e1

MQRankSum
type: SiteQuality
SIO_000300: 1.43e0

FS
type: SiteQuality
SIO_000300: 3.248e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.52e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.61e-1

Annotation
canonical: false
consequence: synonymous_variant
consequence: splice_region_variant
ensembl gene: ENSG00000175866
ensembl protein: ENSP00000458964
ensembl transcript: ENST00000575712
gene symbol: BAIAP2
hgvsc: ENST00000575712.1:c.216C>T
hgvsp: ENST00000575712.1:c.216C>T(p.%3D)
variant of: http://identifiers.org/hgnc/947

Annotation
canonical: false
consequence: synonymous_variant
consequence: splice_region_variant
ensembl gene: ENSG00000175866
ensembl protein: ENSP00000458735
ensembl transcript: ENST00000573677
gene symbol: BAIAP2
hgvsc: ENST00000573677.1:c.42C>T
hgvsp: ENST00000573677.1:c.42C>T(p.%3D)
variant of: http://identifiers.org/hgnc/947

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000175866
ensembl protein: ENSP00000376211
ensembl transcript: ENST00000392411
gene symbol: BAIAP2
hgvsc: ENST00000392411.3:c.-18+22658C>T
variant of: http://identifiers.org/hgnc/947

Annotation
canonical: false
consequence: synonymous_variant
consequence: splice_region_variant
ensembl gene: ENSG00000175866
ensembl protein: ENSP00000315685
ensembl transcript: ENST00000321280
gene symbol: BAIAP2
hgvsc: ENST00000321280.7:c.216C>T
hgvsp: ENST00000321280.7:c.216C>T(p.%3D)
variant of: http://identifiers.org/hgnc/947

GenotypeDepth
all individuals: 13574
bin: 1.75e1
variant carriers: 1

GenotypeDepth
all individuals: 4
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 500
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1907
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 6931
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 19
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 79
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 53
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 162
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2055
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 15992
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 15
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 16780
bin: 1.25e1
variant carriers: 1

GenotypeDepth
all individuals: 38
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 843
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2659
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1232
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22503
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27146
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1090
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2073
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.810567734682406e-4
allele num: 3558
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1934
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6910
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.515679932498945e-5
allele num: 28444
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4554
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5774
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 362
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.65e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.33e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.787e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.55e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.066e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.86e-2

MQ
type: SiteQuality
SIO_000300: 5.925e1

DP
type: SiteQuality
SIO_000300: 7.90623e5

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: splice_region_variant
consequence: intron_variant
ensembl gene: ENSG00000175866
ensembl transcript: ENST00000573894
gene symbol: BAIAP2
hgvsc: ENST00000573894.1:n.296+6_296+7dupAC
variant of: http://identifiers.org/hgnc/947

Annotation
canonical: false
consequence: splice_region_variant
consequence: intron_variant
ensembl gene: ENSG00000175866
ensembl protein: ENSP00000459787
ensembl transcript: ENST00000572073
gene symbol: BAIAP2
hgvsc: ENST00000572073.1:c.43+6_43+7dupAC
variant of: http://identifiers.org/hgnc/947

GenotypeDepth
all individuals: 2644
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 774
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 227
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3180
bin: 2.5e0
variant carriers: 1

GenotypeDepth
all individuals: 3
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 97
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 17213
bin: 1.25e1
variant carriers: 1

GenotypeDepth
all individuals: 14665
bin: 7.5e0
variant carriers: 7

GenotypeDepth
all individuals: 1
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8338
bin: 1.75e1
variant carriers: 1

GenotypeDepth
all individuals: 14
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 28
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 51
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 416
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5206
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 4.75e1
variant carriers: 2

GenotypeQuality
all individuals: 22
bin: 5.25e1
variant carriers: 2

GenotypeQuality
all individuals: 139
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4487
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27117
bin: 7.5e0
variant carriers: 2

GenotypeQuality
all individuals: 4
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6129
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 4
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3036
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 533
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 4.25e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.135839384878257e-4
allele num: 4682
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 226
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 986
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1334
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 414
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.850000000000001e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.41e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.14e-1

MQ
type: SiteQuality
SIO_000300: 5.671e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

QD
type: SiteQuality
SIO_000300: 2.0e0

DP
type: SiteQuality
SIO_000300: 5.76598e5

Annotation
canonical: false
consequence: splice_region_variant
consequence: intron_variant
ensembl gene: ENSG00000175866
ensembl protein: ENSP00000458735
ensembl transcript: ENST00000573677
gene symbol: BAIAP2
hgvsc: ENST00000573677.1:c.43+6_43+7delAC
variant of: http://identifiers.org/hgnc/947

Annotation
canonical: false
consequence: splice_region_variant
consequence: intron_variant
ensembl gene: ENSG00000175866
ensembl protein: ENSP00000461736
ensembl transcript: ENST00000573659
gene symbol: BAIAP2
hgvsc: ENST00000573659.1:c.43+6_43+7delAC
variant of: http://identifiers.org/hgnc/947

GenotypeDepth
all individuals: 14665
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 28
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 227
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 774
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 97
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 51
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8338
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2644
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 14
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3180
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 17213
bin: 1.25e1
variant carriers: 1

GenotypeDepth
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3036
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 416
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 533
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5206
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 27117
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6129
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4487
bin: 1.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1334
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 414
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 986
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.135839384878257e-4
allele num: 4682
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 226
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

MQ
type: SiteQuality
SIO_000300: 5.671e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.41e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.850000000000001e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.14e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

QD
type: SiteQuality
SIO_000300: 2.0e0

DP
type: SiteQuality
SIO_000300: 5.76598e5

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

GenotypeDepth
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 36
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 866
bin: 2.25e1
variant carriers: 8

GenotypeDepth
all individuals: 17147
bin: 7.5e0
variant carriers: 127

GenotypeDepth
all individuals: 3958
bin: 1.75e1
variant carriers: 13

GenotypeDepth
all individuals: 78
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 12326
bin: 1.25e1
variant carriers: 50

GenotypeDepth
all individuals: 5712
bin: 2.5e0
variant carriers: 130

GenotypeDepth
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 219
bin: 2.75e1
variant carriers: 2

GenotypeDepth
all individuals: 4
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 27
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 9.25e1
variant carriers: 4

GenotypeQuality
all individuals: 73
bin: 7.25e1
variant carriers: 12

GenotypeQuality
all individuals: 21056
bin: 2.5e0
variant carriers: 15

GenotypeQuality
all individuals: 73
bin: 5.75e1
variant carriers: 5

GenotypeQuality
all individuals: 67
bin: 6.75e1
variant carriers: 12

GenotypeQuality
all individuals: 226
bin: 3.25e1
variant carriers: 20

GenotypeQuality
all individuals: 2614
bin: 1.25e1
variant carriers: 26

GenotypeQuality
all individuals: 1850
bin: 1.75e1
variant carriers: 16

GenotypeQuality
all individuals: 12536
bin: 7.5e0
variant carriers: 25

GenotypeQuality
all individuals: 299
bin: 9.75e1
variant carriers: 34

GenotypeQuality
all individuals: 612
bin: 2.25e1
variant carriers: 32

GenotypeQuality
all individuals: 113
bin: 4.75e1
variant carriers: 11

GenotypeQuality
all individuals: 92
bin: 5.25e1
variant carriers: 12

GenotypeQuality
all individuals: 124
bin: 4.25e1
variant carriers: 21

GenotypeQuality
all individuals: 64
bin: 7.75e1
variant carriers: 14

GenotypeQuality
all individuals: 83
bin: 6.25e1
variant carriers: 11

GenotypeQuality
all individuals: 49
bin: 8.25e1
variant carriers: 3

GenotypeQuality
all individuals: 164
bin: 3.75e1
variant carriers: 31

GenotypeQuality
all individuals: 237
bin: 2.75e1
variant carriers: 26

GenotypeQuality
all individuals: 31
bin: 8.75e1
variant carriers: 1

East Asian
type: Population
allele count: 9
allele frequency: 9.0e-2
allele num: 100
num of homozygotes: 1

South Asian
type: Population
allele count: 18
allele frequency: 6.428571428571428e-2
allele num: 280
num of homozygotes: 3

Other
type: Population
allele count: 1
allele frequency: 8.333333333333333e-2
allele num: 12
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 28
num of homozygotes: 0

African
type: Population
allele count: 8
allele frequency: 1.79372197309417e-2
allele num: 446
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 2.314814814814815e-2
allele num: 216
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 30
allele frequency: 2.777777777777778e-2
allele num: 1080
num of homozygotes: 6

QD
type: SiteQuality
SIO_000300: 1.874e1

MQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

FS
type: SiteQuality
SIO_000300: 2.21984e2

ClippingRankSum
type: SiteQuality
SIO_000300: -7.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.372e-1

DP
type: SiteQuality
SIO_000300: 4.23592e5

VQSLOD
type: SiteQuality
SIO_000300: -4.059e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.47e-1

MQ
type: SiteQuality
SIO_000300: 5.537e1

GenotypeDepth
all individuals: 2
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 78
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 4
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 12326
bin: 1.25e1
variant carriers: 70

GenotypeDepth
all individuals: 5712
bin: 2.5e0
variant carriers: 151

GenotypeDepth
all individuals: 1
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 866
bin: 2.25e1
variant carriers: 5

GenotypeDepth
all individuals: 219
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 17147
bin: 7.5e0
variant carriers: 186

GenotypeDepth
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3958
bin: 1.75e1
variant carriers: 23

GenotypeDepth
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 27
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 36
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 73
bin: 5.75e1
variant carriers: 9

GenotypeQuality
all individuals: 612
bin: 2.25e1
variant carriers: 26

GenotypeQuality
all individuals: 73
bin: 7.25e1
variant carriers: 22

GenotypeQuality
all individuals: 237
bin: 2.75e1
variant carriers: 22

GenotypeQuality
all individuals: 33
bin: 9.25e1
variant carriers: 4

GenotypeQuality
all individuals: 2614
bin: 1.25e1
variant carriers: 25

GenotypeQuality
all individuals: 226
bin: 3.25e1
variant carriers: 22

GenotypeQuality
all individuals: 83
bin: 6.25e1
variant carriers: 20

GenotypeQuality
all individuals: 1850
bin: 1.75e1
variant carriers: 22

GenotypeQuality
all individuals: 31
bin: 8.75e1
variant carriers: 3

GenotypeQuality
all individuals: 299
bin: 9.75e1
variant carriers: 59

GenotypeQuality
all individuals: 124
bin: 4.25e1
variant carriers: 17

GenotypeQuality
all individuals: 164
bin: 3.75e1
variant carriers: 30

GenotypeQuality
all individuals: 21056
bin: 2.5e0
variant carriers: 37

GenotypeQuality
all individuals: 67
bin: 6.75e1
variant carriers: 18

GenotypeQuality
all individuals: 113
bin: 4.75e1
variant carriers: 17

GenotypeQuality
all individuals: 49
bin: 8.25e1
variant carriers: 12

GenotypeQuality
all individuals: 92
bin: 5.25e1
variant carriers: 16

GenotypeQuality
all individuals: 12536
bin: 7.5e0
variant carriers: 42

GenotypeQuality
all individuals: 64
bin: 7.75e1
variant carriers: 14

South Asian
type: Population
allele count: 10
allele frequency: 3.571428571428571e-2
allele num: 280
num of homozygotes: 0

Latino
type: Population
allele count: 16
allele frequency: 7.407407407407407e-2
allele num: 216
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.0e-2
allele num: 100
num of homozygotes: 0

African
type: Population
allele count: 7
allele frequency: 1.569506726457399e-2
allele num: 446
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 28
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 51
allele frequency: 4.722222222222222e-2
allele num: 1080
num of homozygotes: 1

MQ
type: SiteQuality
SIO_000300: 5.537e1

DP
type: SiteQuality
SIO_000300: 4.23592e5

MQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.47e-1

QD
type: SiteQuality
SIO_000300: 1.874e1

FS
type: SiteQuality
SIO_000300: 2.21984e2

VQSLOD
type: SiteQuality
SIO_000300: -4.059e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.372e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.51e-1

European (Non-Finnish)
type: Population
allele count: 97
allele frequency: 8.981481481481482e-2
allele num: 1080
num of homozygotes: 5

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 100
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.059e1

MQ
type: SiteQuality
SIO_000300: 5.537e1

FS
type: SiteQuality
SIO_000300: 2.21984e2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.372e-1

QD
type: SiteQuality
SIO_000300: 1.874e1

MQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.47e-1

DP
type: SiteQuality
SIO_000300: 4.23592e5

European (Finnish)
type: Population
allele count: 2
allele frequency: 7.142857142857142e-2
allele num: 28
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 8.333333333333333e-2
allele num: 12
num of homozygotes: 0

Latino
type: Population
allele count: 9
allele frequency: 4.166666666666666e-2
allele num: 216
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.059e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.47e-1

MQ
type: SiteQuality
SIO_000300: 5.537e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.27e-1

QD
type: SiteQuality
SIO_000300: 1.874e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.372e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

DP
type: SiteQuality
SIO_000300: 4.23592e5

FS
type: SiteQuality
SIO_000300: 2.21984e2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.51e-1